Lsi05G002370 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi05G002370
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	PRKR-interacting protein 1
Location	chr05: 3134644 .. 3137950 (-)
RNA-Seq Expression	Lsi05G002370
Synteny	Lsi05G002370

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGGAGTTTCTTTTAATGTAATTTCCCTCTTGCCGGTGGCGACTCCTCTCTCTCTAAGGAAAACTTCGAATTCGTACGTCCACTGCTCTGCGACCGTCGACAAAGATGAAGTTAAAGAATCGGCAATTCACTTGAAGGTCGCATAAACATTGCTGCTTCAATTACCATAAGAGCTTCTTGGAATTGATTTGAGGAATTGTCTTACAATTAGGGTTTTAGGGTTTCTGGAATATCATGTCAACCGGCAGGCTGAAGGACGGGGAACGTCGGCTGGTGATTCCGATGCCTCCCAAACCGAAACCTGAAACGCAGTTGGCCACAACTGAGTCGAACGCGCTTGTGGAATATACGCCGCCGGTGAAGGAGGAGGATGAGGATTTGGAGGTCAAGCTCCGGAGAATCATTGATAATGTTCCTGTTCGTGTCAGCAACACGTCTGGAAGCTCTGCTGGTTCTGGTTCCGGTGATTTTCACCAGGTACTTGAGTGAATTATCTTGTTTTATATTGTGTGGATTTTCATCTGGGGTTGATTCTTGTCGATGACTTTTGTTTTCACATTTTTTTGTGGGATGTTTTTACGATGAATGTTTGATGCGTTGCTGGAAAACTGTGCAATTGCATTACTTGGAGTGGTTATTGACAGAGTATGAAATGTATCTTAGGCCTTAGGATACGCTAACAAACTTGTTTCCGGACATTATAGATTATTTGAGTAAGTGAGGTTAGCAACGGATGATGAGTGGAAGAACTTTTTATCGGGGGGAAATAGGCAGGGTGTGAACAACAGGGGTGTTGAATTAAGGTAGATGTCCCTTATTTTGATGGGAATTTGAGTATTGAAAATTCCTAGATTGGGTTTAGCTCATGTCATTTATTTGAATCTATGGACATTTGTAAAGAAAATCCTTAGAACTCAAGGACACAGCTGTACAACCTATAGAATACATCCTGTTCAAGTAAGGTCGTGATGTTTGTAAAGAAAATGGTGGTGTATACATTGAAAGAGCGAAGCCAGGGCCCTAGGGTTGATGGAGCAATTGCAAAAGCATTCTTGAAAAAGGTAGAAATTAAAATGAATACCTGGCAAGAAAGACAACCTACATTGTAGGAGTACAACTAGGATGTGGTTAGGTTACTGAGATTAGATGTTTGTAGGTAATAGGAAAATTGGGGCATCTAGTTTATATTCAGAATGGTGCGATAATTGAAGAGAAAGGCAAGGTTTTGTAAGATTCCCTGTCATGTTAAGAAACAAGGAAACTATCTACCAATAAATTTCATTCGGGTGGATTTAGAATCGTGGATTTACCTTAAAGTGGGACACCCGTTGATTCATTTTAATAATTTTGTAAACTTTACAATTGATAAAAATTTCTGGTTACATAATGAATTAATCTTATGCTCACACAGTGGGAGGGAGAAATGGATTGGAGTTTGTTAGGAACTAAGGTAACATGGGCTACTTTTGTCCCACATCGGTTAGAATGAGATGACCAATCTGATATTTAAGTGACTTGGTTCTCTCACCTCAATACCTGACTTTTGAGGTGTGGTTCCCCAAGGTGCTTAAGTACCTAACAATAGTATTAGAGCAGATTGTTGATGTTCCGGAATGGAACCGGCGGAGGGTTCTGACCAGGTGTGACCAAGTGAAGTACCATTGGAGTAGCTGTCAGGATGTTGGCTTTTTGGGGATGGGGTATTGTTAGGAACCAAGGTAGTATGAGCTACCTTTGTCCTACATTGGTTAGAATGGGATGACCAATGTGGTACTTTAGTAGCTTGGCTCTCCCACCTCAATAGCTAGCTTTTGGGGTGTGGTTCTCCAAGGTGCTTAAGTACCTAACAGAGTTATTCAGACTGAGTGGGAGGAATGATTTGGAGTAATGTTGTGTTCCATGCACCCATATTTTCACATGATATATCTATGATCATCTCTTACCAAAATCAAGTCACTATGGTTATTAGTTATCAGCAGGTTTTTGTGGTAGTGCATCAATTGACCATGGAGTAACAGTAGTATGTAAATGAATACTCTGTTTGCAACAATGCTCTTGATATTTTATCTATGTAAATGGCATTGCTTGCTTTTGTTGGTTTTCTATGTCATCTAAGAAAGGCTAGTGTCATTTAATAGAAGTGACAGGACAGGTTTATGAAAATACTGTTTGACATAAAAATGCTTTTTAGTCTGGTGTTAAATTGGCTTTTTAATATTTTAAGGAATCAAGAAAGTTCATGTTTTACTATGGGGAATTGAACTTTTCAACCTGGCTCAATGTCATCTAATGTGTTTAGGAAAGAAAGTTTCCACTTGTGTAGTCAAGTCTACAATTTTTACTTCAGAATGCATTAGATCTTTTTGTTTAACTTTAATCTATTTATCTTCCTCTCCATCCTTAATAAAGAGCAGCTATTCATGAGTTTATGGGTAATATGTCTCAATCCTTGGATTATGTAGTAATATCTGCTTGTTCCATCAAATTTTCAAATGGCAGTATAGGCAAATGAGGCGAAAAGAGCAAGACAGACTTGCTAGAATGGACGTTGATTATCAGAAAAAGAAAGAAATAGCAGAATTCAATATGCGAAGGGAAGAAAGACTGAAAGCTGCTGAGGAGCGTACTGCAAAGAAGCGCTTAAAACGCCAAAAGAAGAAGCAAAGAAGAAAAGAAAAGAGGAGCAAACTGAATTCAGGTGGAGATGAGAATCAGAAAGATGAATCCTCGGATGATGATGGGGATACAGATAATGGTGAGGATGAAGCAACATGACTGGATCTTTTCCACCTGAAATCAGAGTTTGAGAACTTTTCTCCCCGAGCTTTTTCAGATGAGCATCTAACCAGAAGACAGCCATGAGTTTGCCTACCTGGCATTTTGCCGGTCTGCAATTCCTTATAAGCCATTGTAGTACCTGGAACTGTTGGCTTTTGTGATTTTATTGCAGGTGGGGTTGGAAGAATGGATCATTTGAACATGATCCTCATATCTTCCCACAGGACACCTCTCTCTCTCTCAATTGCATGACACCCAAATGTGTTAGCAGAATATTAATTACATTACATGTTGAACAGATTGACAGAATTTTAGTTTAGTCTGAGGGATACTCGTAGTGTGTATTACTTATATATATGAACTTGTTGCTTATGATTTATGAACAGAAGGGACGTTGTTCTAAGATGAGTAGAGATGCAATATTGAAGAAATGTGATTCATACTCAATCTTTGGCCTACACTTTTAGAAACTGATATAGGTTATGAGATACAAAACTTGGGCATGCTTTGACCATTAGAATTGAATGAGG

mRNA sequence

TGGAGTTTCTTTTAATGTAATTTCCCTCTTGCCGGTGGCGACTCCTCTCTCTCTAAGGAAAACTTCGAATTCGTACGTCCACTGCTCTGCGACCGTCGACAAAGATGAAGTTAAAGAATCGGCAATTCACTTGAAGGGTTTTAGGGTTTCTGGAATATCATGTCAACCGGCAGGCTGAAGGACGGGGAACGTCGGCTGGTGATTCCGATGCCTCCCAAACCGAAACCTGAAACGCAGTTGGCCACAACTGAGTCGAACGCGCTTGTGGAATATACGCCGCCGGTGAAGGAGGAGGATGAGGATTTGGAGGTCAAGCTCCGGAGAATCATTGATAATGTTCCTGTTCGTGTCAGCAACACGTCTGGAAGCTCTGCTGGTTCTGGTTCCGGTGATTTTCACCAGTATAGGCAAATGAGGCGAAAAGAGCAAGACAGACTTGCTAGAATGGACGTTGATTATCAGAAAAAGAAAGAAATAGCAGAATTCAATATGCGAAGGGAAGAAAGACTGAAAGCTGCTGAGGAGCGTACTGCAAAGAAGCGCTTAAAACGCCAAAAGAAGAAGCAAAGAAGAAAAGAAAAGAGGAGCAAACTGAATTCAGGTGGAGATGAGAATCAGAAAGATGAATCCTCGGATGATGATGGGGATACAGATAATGGTGAGGATGAAGCAACATGACTGGATCTTTTCCACCTGAAATCAGAGTTTGAGAACTTTTCTCCCCGAGCTTTTTCAGATGAGCATCTAACCAGAAGACAGCCATGAGTTTGCCTACCTGGCATTTTGCCGGTCTGCAATTCCTTATAAGCCATTGTAGTACCTGGAACTGTTGGCTTTTGTGATTTTATTGCAGGTGGGGTTGGAAGAATGGATCATTTGAACATGATCCTCATATCTTCCCACAGGACACCTCTCTCTCTCTCAATTGCATGACACCCAAATGTGTTAGCAGAATATTAATTACATTACATGTTGAACAGATTGACAGAATTTTAGTTTAGTCTGAGGGATACTCGTAGTGTGTATTACTTATATATATGAACTTGTTGCTTATGATTTATGAACAGAAGGGACGTTGTTCTAAGATGAGTAGAGATGCAATATTGAAGAAATGTGATTCATACTCAATCTTTGGCCTACACTTTTAGAAACTGATATAGGTTATGAGATACAAAACTTGGGCATGCTTTGACCATTAGAATTGAATGAGG

Coding sequence (CDS)

ATGTCAACCGGCAGGCTGAAGGACGGGGAACGTCGGCTGGTGATTCCGATGCCTCCCAAACCGAAACCTGAAACGCAGTTGGCCACAACTGAGTCGAACGCGCTTGTGGAATATACGCCGCCGGTGAAGGAGGAGGATGAGGATTTGGAGGTCAAGCTCCGGAGAATCATTGATAATGTTCCTGTTCGTGTCAGCAACACGTCTGGAAGCTCTGCTGGTTCTGGTTCCGGTGATTTTCACCAGTATAGGCAAATGAGGCGAAAAGAGCAAGACAGACTTGCTAGAATGGACGTTGATTATCAGAAAAAGAAAGAAATAGCAGAATTCAATATGCGAAGGGAAGAAAGACTGAAAGCTGCTGAGGAGCGTACTGCAAAGAAGCGCTTAAAACGCCAAAAGAAGAAGCAAAGAAGAAAAGAAAAGAGGAGCAAACTGAATTCAGGTGGAGATGAGAATCAGAAAGATGAATCCTCGGATGATGATGGGGATACAGATAATGGTGAGGATGAAGCAACATGA

Protein sequence

MSTGRLKDGERRLVIPMPPKPKPETQLATTESNALVEYTPPVKEEDEDLEVKLRRIIDNVPVRVSNTSGSSAGSGSGDFHQYRQMRRKEQDRLARMDVDYQKKKEIAEFNMRREERLKAAEERTAKKRLKRQKKKQRRKEKRSKLNSGGDENQKDESSDDDGDTDNGEDEAT

Homology

[Close]

BLAST of Lsi05G002370 vs. ExPASy Swiss-Prot
Match: Q9CWV6 (PRKR-interacting protein 1 OS=Mus musculus OX=10090 GN=Prkrip1 PE=1 SV=2)

HSP 1 Score: 57.0 bits (136), Expect = 2.4e-07
Identity = 64/179 (35.75%), Postives = 90/179 (50.28%), Query Frame = 0


Query: 18  PPKPKPETQLATTESNALVEYTPPVKEEDEDLEVKLRRIIDN----VPVR---------- 77
           PP+PK E Q      NA            E+ ++KL R++ N    VP+           
Sbjct: 11  PPRPKKEPQTLVIPKNAA-----------EEQKLKLERLMKNPDKAVPIPEKMNEWAPRA 70

Query: 78  ----VSNTSGSSAGSGSGDFHQYRQMRRKEQDRLARMDVDYQKKKEIAEFNMRREERLKA 137
               V +  GSSAG+GSG+FH YR +RR+E  R   MD   +K+K  AEF  R E+   A
Sbjct: 71  PPEFVRDVMGSSAGAGSGEFHVYRHLRRREYQRQDYMDAMAEKQKLDAEFQKRLEKNKIA 130

Query: 138 AEERTAKKRLKRQK--------KKQRRKEKRSKLNSGGDENQKDESSDDDGDTDNGEDE 171
           AEE+TAK+R KRQK        KK + ++K+ K      + Q   SSD+  +T+  E+E
Sbjct: 131 AEEQTAKRRKKRQKLKEKKLLAKKMKLEQKKQKEEPSQCQEQHASSSDEASETEEEEEE 178

[Close]

BLAST of Lsi05G002370 vs. ExPASy Swiss-Prot
Match: Q2KIT1 (PRKR-interacting protein 1 OS=Bos taurus OX=9913 GN=PRKRIP1 PE=2 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 1.6e-06
Identity = 63/174 (36.21%), Postives = 89/174 (51.15%), Query Frame = 0


Query: 18  PPKPKPETQLATTESNALVEYTPPVKEEDEDLEVKLRRIIDN----VPVR---------- 77
           PP+PK E Q      NA            E+ ++KL R++ N    VP+           
Sbjct: 11  PPRPKKEPQALIIPKNAA-----------EEQKLKLERLMKNPDKAVPIPEKMSEWAPRP 70

Query: 78  ----VSNTSGSSAGSGSGDFHQYRQMRRKEQDRLARMDVDYQKKKEIAEFNMRREERLKA 137
               V +  GSSAG+GSG+FH YR +RR+E  R   MD   +K+K  AEF  R E    A
Sbjct: 71  PPEFVRDVMGSSAGAGSGEFHVYRHLRRREYQRQDYMDAMAEKQKLEAEFQKRLERNKIA 130

Query: 138 AEERTAKKRLKRQKKKQRR-KEKRSKLNSGGDENQKDESSDDDGDTDNGEDEAT 173
           AEE+TAK+R KRQK K+++   K+ KL     + Q + SS+      +G +EA+
Sbjct: 131 AEEQTAKRRKKRQKLKEKKLLAKKMKLE---QKKQSEASSETQEQPSSGSEEAS 170

[Close]

BLAST of Lsi05G002370 vs. ExPASy Swiss-Prot
Match: Q9H875 (PRKR-interacting protein 1 OS=Homo sapiens OX=9606 GN=PRKRIP1 PE=1 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 3.5e-06
Identity = 61/175 (34.86%), Postives = 86/175 (49.14%), Query Frame = 0


Query: 18  PPKPKPETQLATTESNALVEYTPPVKEEDEDLEVKLRRIIDN----VPVR---------- 77
           PP+PK E Q      NA            E+ ++KL R++ N    VP+           
Sbjct: 11  PPRPKKEPQTLVIPKNAA-----------EEQKLKLERLMKNPDKAVPIPEKMSEWAPRP 70

Query: 78  ----VSNTSGSSAGSGSGDFHQYRQMRRKEQDRLARMDVDYQKKKEIAEFNMRREERLKA 137
               V +  GSSAG+GSG+FH YR +RR+E  R   MD   +K+K  AEF  R E+   A
Sbjct: 71  PPEFVRDVMGSSAGAGSGEFHVYRHLRRREYQRQDYMDAMAEKQKLDAEFQKRLEKNKIA 130

Query: 138 AEERTAKKRLKRQKKKQR----RKEKRSKLNSGGDENQKDESSDDDGDTDNGEDE 171
           AEE+TAK+R KRQK K++    +K K  +    G    K++ S    +    E+E
Sbjct: 131 AEEQTAKRRKKRQKLKEKKLLAKKMKLEQKKQEGPGQPKEQGSSSSAEASGTEEE 174

[Close]

BLAST of Lsi05G002370 vs. ExPASy Swiss-Prot
Match: Q5R5J3 (PRKR-interacting protein 1 OS=Pongo abelii OX=9601 GN=PRKRIP1 PE=2 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 3.5e-06
Identity = 61/175 (34.86%), Postives = 86/175 (49.14%), Query Frame = 0


Query: 18  PPKPKPETQLATTESNALVEYTPPVKEEDEDLEVKLRRIIDN----VPVR---------- 77
           PP+PK E Q      NA            E+ ++KL R++ N    VP+           
Sbjct: 11  PPRPKKEPQTLVIPKNAA-----------EEQKLKLERLMKNPDKAVPIPEKMSEWAPRP 70

Query: 78  ----VSNTSGSSAGSGSGDFHQYRQMRRKEQDRLARMDVDYQKKKEIAEFNMRREERLKA 137
               V +  GSSAG+GSG+FH YR +RR+E  R   MD   +K+K  AEF  R E+   A
Sbjct: 71  PPEFVRDVMGSSAGAGSGEFHVYRHLRRREYQRQDYMDAMAEKQKLDAEFQKRLEKNKIA 130

Query: 138 AEERTAKKRLKRQKKKQR----RKEKRSKLNSGGDENQKDESSDDDGDTDNGEDE 171
           AEE+TAK+R KRQK K++    +K K  +    G    K++ S    +    E+E
Sbjct: 131 AEEQTAKRRKKRQKLKEKKLLAKKMKLEQKKQEGPGQPKEQGSSSSAEASGTEEE 174

[Close]

BLAST of Lsi05G002370 vs. ExPASy Swiss-Prot
Match: Q5ZKU0 (PRKR-interacting protein 1 homolog OS=Gallus gallus OX=9031 GN=PRKRIP1 PE=2 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 6.0e-06
Identity = 59/167 (35.33%), Postives = 88/167 (52.69%), Query Frame = 0


Query: 16  PMPPKPKPETQLATTESNALVEYTPPVK------EEDEDLEVKLRRIIDNVPVR-VSNTS 75
           P PP+P+ E Q      NA  E    ++      E+   +  KL       P   V +  
Sbjct: 7   PRPPRPRKEPQPLVIPRNAAEEQRLRLERLMRNPEKTVPIPEKLNEWAPRPPPEFVRDVM 66

Query: 76  GSSAGSGSGDFHQYRQMRRKEQDRLARMDVDYQKKKEIAEFNMRREERLKAAEERTAKKR 135
           GSSAG+GSG+FH YR +RR+E  R   MD   +K++   EF  + E     AEE+TAK+R
Sbjct: 67  GSSAGAGSGEFHVYRHLRRREYQRQDFMDAMAEKQRLDEEFQKKLERNKMIAEEQTAKRR 126

Query: 136 LKRQKKKQRR-KEKRSKLNSGGDENQKDES----SDDDGDTDNGEDE 171
            KRQK K+++ + K++KL     E + D+S    S +D + D+ E+E
Sbjct: 127 RKRQKLKEKKLQAKKNKLEQKKQEKESDQSQERVSSEDDEEDSKEEE 173

[Close]

BLAST of Lsi05G002370 vs. ExPASy TrEMBL
Match: A0A1S3C2Q3 (PRKR-interacting protein 1 OS=Cucumis melo OX=3656 GN=LOC103496186 PE=4 SV=1)

HSP 1 Score: 295.0 bits (754), Expect = 2.0e-76
Identity = 165/172 (95.93%), Postives = 170/172 (98.84%), Query Frame = 0


Query: 1   MSTGRLKDGERRLVIPMPPKPKPETQLATTESNALVEYTPPVKEEDEDLEVKLRRIIDNV 60
           MSTG+LKDGERRLVIPMPPKPKPETQLATTESNALVEYTPPVKEEDEDLEVKLRRIIDNV
Sbjct: 1   MSTGKLKDGERRLVIPMPPKPKPETQLATTESNALVEYTPPVKEEDEDLEVKLRRIIDNV 60

Query: 61  PVRVSNTSGSSAGSGSGDFHQYRQMRRKEQDRLARMDVDYQKKKEIAEFNMRREERLKAA 120
           PVRVSNTSGSSAGSGSGDFHQYRQMRRKEQDRLARMDVDYQKKKEIAEFNMRREER+KAA
Sbjct: 61  PVRVSNTSGSSAGSGSGDFHQYRQMRRKEQDRLARMDVDYQKKKEIAEFNMRREERMKAA 120

Query: 121 EERTAKKRLKRQKKKQRRKEKRSKLNSGGDENQKDESSDDDGDTDNGEDEAT 173
           EERTAKKRLKRQKKKQRRKEKRSK+NSG DENQK+ESSDD+GDTD GEDEAT
Sbjct: 121 EERTAKKRLKRQKKKQRRKEKRSKMNSGEDENQKEESSDDEGDTDKGEDEAT 172

[Close]

BLAST of Lsi05G002370 vs. ExPASy TrEMBL
Match: A0A0A0L705 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G199600 PE=4 SV=1)

HSP 1 Score: 293.1 bits (749), Expect = 7.5e-76
Identity = 164/172 (95.35%), Postives = 169/172 (98.26%), Query Frame = 0


Query: 1   MSTGRLKDGERRLVIPMPPKPKPETQLATTESNALVEYTPPVKEEDEDLEVKLRRIIDNV 60
           MSTG+LKDGERRLVIPMPPKPKP+TQLAT ESNALVEYTPPVKEEDEDLEVKLRRIIDNV
Sbjct: 1   MSTGKLKDGERRLVIPMPPKPKPDTQLATAESNALVEYTPPVKEEDEDLEVKLRRIIDNV 60

Query: 61  PVRVSNTSGSSAGSGSGDFHQYRQMRRKEQDRLARMDVDYQKKKEIAEFNMRREERLKAA 120
           PVRVSNTSGSSAGSGSGDFHQYRQMRRKEQDRLARMDVDYQKKKEIAEFNMRREER+KAA
Sbjct: 61  PVRVSNTSGSSAGSGSGDFHQYRQMRRKEQDRLARMDVDYQKKKEIAEFNMRREERMKAA 120

Query: 121 EERTAKKRLKRQKKKQRRKEKRSKLNSGGDENQKDESSDDDGDTDNGEDEAT 173
           EERT+KKRLKRQKKKQRRKEKRSKLNSG DENQKDESSDD+GDTD GEDEAT
Sbjct: 121 EERTSKKRLKRQKKKQRRKEKRSKLNSGEDENQKDESSDDEGDTDKGEDEAT 172

[Close]

BLAST of Lsi05G002370 vs. ExPASy TrEMBL
Match: A0A6J1FTH7 (PRKR-interacting protein 1 OS=Cucurbita moschata OX=3662 GN=LOC111447158 PE=4 SV=1)

HSP 1 Score: 283.9 bits (725), Expect = 4.5e-73
Identity = 162/173 (93.64%), Postives = 168/173 (97.11%), Query Frame = 0


Query: 1   MSTGRLKDGERRLVIPMPPKPKPETQLATTESNALVEYTPPVKEEDEDLEVKLRRIIDNV 60
           MSTG+LKDG+RRLVIPMPPKPK +TQLATTESNALV YTPPVKEEDEDLEVKLRRIIDNV
Sbjct: 1   MSTGKLKDGDRRLVIPMPPKPKSDTQLATTESNALVAYTPPVKEEDEDLEVKLRRIIDNV 60

Query: 61  PVRVSNTSGSSAGSGSGDFHQYRQMRRKEQDRLARMDVDYQKKKEIAEFNMRREERLKAA 120
           PVRVSNTSGSSAGSGSGDFHQYRQMRRKEQDRLARMDVDYQKKKEIAEFNMRREERLKAA
Sbjct: 61  PVRVSNTSGSSAGSGSGDFHQYRQMRRKEQDRLARMDVDYQKKKEIAEFNMRREERLKAA 120

Query: 121 EERTAKKRLKRQKKKQRRKEKRSKLN-SGGDENQKDESSDDDGDTDNGEDEAT 173
           EERT+KKRLKRQKKKQRRKEK+SKLN SGGDENQKD SS D+GDTDNGEDEAT
Sbjct: 121 EERTSKKRLKRQKKKQRRKEKKSKLNSSGGDENQKDASSGDEGDTDNGEDEAT 173

[Close]

BLAST of Lsi05G002370 vs. ExPASy TrEMBL
Match: A0A6J1D4Z8 (PRKR-interacting protein 1 OS=Momordica charantia OX=3673 GN=LOC111017661 PE=4 SV=1)

HSP 1 Score: 282.7 bits (722), Expect = 1.0e-72
Identity = 158/172 (91.86%), Postives = 166/172 (96.51%), Query Frame = 0


Query: 1   MSTGRLKDGERRLVIPMPPKPKPETQLATTESNALVEYTPPVKEEDEDLEVKLRRIIDNV 60
           MSTGRLKDG+RRLV+PMPP+PK ETQLA+T+SNALV YTPPVKEEDEDLEVKLRRIIDNV
Sbjct: 1   MSTGRLKDGDRRLVVPMPPEPKSETQLASTDSNALVAYTPPVKEEDEDLEVKLRRIIDNV 60

Query: 61  PVRVSNTSGSSAGSGSGDFHQYRQMRRKEQDRLARMDVDYQKKKEIAEFNMRREERLKAA 120
           PVRVSNTSGSSAGSGSGDFHQYRQMRRKEQDRLARMDVDYQ+KKEIAEFNMRREERLKAA
Sbjct: 61  PVRVSNTSGSSAGSGSGDFHQYRQMRRKEQDRLARMDVDYQRKKEIAEFNMRREERLKAA 120

Query: 121 EERTAKKRLKRQKKKQRRKEKRSKLNSGGDENQKDESSDDDGDTDNGEDEAT 173
           EERT KKRLKRQKKKQRRKEK+ K+NSGGDENQKD SS DDGDTDNGEDEAT
Sbjct: 121 EERTEKKRLKRQKKKQRRKEKKRKVNSGGDENQKDASSGDDGDTDNGEDEAT 172

[Close]

BLAST of Lsi05G002370 vs. ExPASy TrEMBL
Match: A0A6J1IY34 (PRKR-interacting protein 1 OS=Cucurbita maxima OX=3661 GN=LOC111481671 PE=4 SV=1)

HSP 1 Score: 281.2 bits (718), Expect = 2.9e-72
Identity = 160/173 (92.49%), Postives = 168/173 (97.11%), Query Frame = 0


Query: 1   MSTGRLKDGERRLVIPMPPKPKPETQLATTESNALVEYTPPVKEEDEDLEVKLRRIIDNV 60
           MSTG+LKDG+RRLVIPMPPKPK +TQLATTESNALV YTPPVKEEDEDLEVKLRRIIDNV
Sbjct: 1   MSTGKLKDGDRRLVIPMPPKPKSDTQLATTESNALVAYTPPVKEEDEDLEVKLRRIIDNV 60

Query: 61  PVRVSNTSGSSAGSGSGDFHQYRQMRRKEQDRLARMDVDYQKKKEIAEFNMRREERLKAA 120
           PVRVSNTSGSSAGSGSGDFHQYRQMRRKEQDRLARMDVDYQKKKEIAEFNMRREERLKAA
Sbjct: 61  PVRVSNTSGSSAGSGSGDFHQYRQMRRKEQDRLARMDVDYQKKKEIAEFNMRREERLKAA 120

Query: 121 EERTAKKRLKRQKKKQRRKEKRSKLNS-GGDENQKDESSDDDGDTDNGEDEAT 173
           EERT+KKRLKRQKK+QRRKEK+SKLNS GGDENQKD SS ++GDTDNGEDEAT
Sbjct: 121 EERTSKKRLKRQKKRQRRKEKKSKLNSGGGDENQKDASSGEEGDTDNGEDEAT 173

[Close]

BLAST of Lsi05G002370 vs. NCBI nr
Match: XP_038886372.1 (PRKR-interacting protein 1 [Benincasa hispida])

HSP 1 Score: 297.7 bits (761), Expect = 6.3e-77
Identity = 166/172 (96.51%), Postives = 171/172 (99.42%), Query Frame = 0


Query: 1   MSTGRLKDGERRLVIPMPPKPKPETQLATTESNALVEYTPPVKEEDEDLEVKLRRIIDNV 60
           MSTGR+KDGERRLVIPMPPKPKPETQLATTESNALVEYTPPVKEEDEDLEVKLRRIIDNV
Sbjct: 1   MSTGRVKDGERRLVIPMPPKPKPETQLATTESNALVEYTPPVKEEDEDLEVKLRRIIDNV 60

Query: 61  PVRVSNTSGSSAGSGSGDFHQYRQMRRKEQDRLARMDVDYQKKKEIAEFNMRREERLKAA 120
           PVRVSNTSGSSAGSGSGDFHQYRQMRRKEQDRLARMDVDYQKKKE+AEFNMRREER+KAA
Sbjct: 61  PVRVSNTSGSSAGSGSGDFHQYRQMRRKEQDRLARMDVDYQKKKELAEFNMRREERMKAA 120

Query: 121 EERTAKKRLKRQKKKQRRKEKRSKLNSGGDENQKDESSDDDGDTDNGEDEAT 173
           EERTAKKRLKRQKKKQRRKEKRSKLNSGGDE+QKDESSDDDGDTDNGE+ AT
Sbjct: 121 EERTAKKRLKRQKKKQRRKEKRSKLNSGGDEDQKDESSDDDGDTDNGENNAT 172

[Close]

BLAST of Lsi05G002370 vs. NCBI nr
Match: XP_008456169.1 (PREDICTED: PRKR-interacting protein 1 [Cucumis melo])

HSP 1 Score: 295.0 bits (754), Expect = 4.1e-76
Identity = 165/172 (95.93%), Postives = 170/172 (98.84%), Query Frame = 0


Query: 1   MSTGRLKDGERRLVIPMPPKPKPETQLATTESNALVEYTPPVKEEDEDLEVKLRRIIDNV 60
           MSTG+LKDGERRLVIPMPPKPKPETQLATTESNALVEYTPPVKEEDEDLEVKLRRIIDNV
Sbjct: 1   MSTGKLKDGERRLVIPMPPKPKPETQLATTESNALVEYTPPVKEEDEDLEVKLRRIIDNV 60

Query: 61  PVRVSNTSGSSAGSGSGDFHQYRQMRRKEQDRLARMDVDYQKKKEIAEFNMRREERLKAA 120
           PVRVSNTSGSSAGSGSGDFHQYRQMRRKEQDRLARMDVDYQKKKEIAEFNMRREER+KAA
Sbjct: 61  PVRVSNTSGSSAGSGSGDFHQYRQMRRKEQDRLARMDVDYQKKKEIAEFNMRREERMKAA 120

Query: 121 EERTAKKRLKRQKKKQRRKEKRSKLNSGGDENQKDESSDDDGDTDNGEDEAT 173
           EERTAKKRLKRQKKKQRRKEKRSK+NSG DENQK+ESSDD+GDTD GEDEAT
Sbjct: 121 EERTAKKRLKRQKKKQRRKEKRSKMNSGEDENQKEESSDDEGDTDKGEDEAT 172

[Close]

BLAST of Lsi05G002370 vs. NCBI nr
Match: XP_011651236.1 (PRKR-interacting protein 1 [Cucumis sativus] >KGN57498.1 hypothetical protein Csa_011493 [Cucumis sativus])

HSP 1 Score: 293.1 bits (749), Expect = 1.5e-75
Identity = 164/172 (95.35%), Postives = 169/172 (98.26%), Query Frame = 0


Query: 1   MSTGRLKDGERRLVIPMPPKPKPETQLATTESNALVEYTPPVKEEDEDLEVKLRRIIDNV 60
           MSTG+LKDGERRLVIPMPPKPKP+TQLAT ESNALVEYTPPVKEEDEDLEVKLRRIIDNV
Sbjct: 1   MSTGKLKDGERRLVIPMPPKPKPDTQLATAESNALVEYTPPVKEEDEDLEVKLRRIIDNV 60

Query: 61  PVRVSNTSGSSAGSGSGDFHQYRQMRRKEQDRLARMDVDYQKKKEIAEFNMRREERLKAA 120
           PVRVSNTSGSSAGSGSGDFHQYRQMRRKEQDRLARMDVDYQKKKEIAEFNMRREER+KAA
Sbjct: 61  PVRVSNTSGSSAGSGSGDFHQYRQMRRKEQDRLARMDVDYQKKKEIAEFNMRREERMKAA 120

Query: 121 EERTAKKRLKRQKKKQRRKEKRSKLNSGGDENQKDESSDDDGDTDNGEDEAT 173
           EERT+KKRLKRQKKKQRRKEKRSKLNSG DENQKDESSDD+GDTD GEDEAT
Sbjct: 121 EERTSKKRLKRQKKKQRRKEKRSKLNSGEDENQKDESSDDEGDTDKGEDEAT 172

[Close]

BLAST of Lsi05G002370 vs. NCBI nr
Match: XP_022941948.1 (PRKR-interacting protein 1 [Cucurbita moschata])

HSP 1 Score: 283.9 bits (725), Expect = 9.4e-73
Identity = 162/173 (93.64%), Postives = 168/173 (97.11%), Query Frame = 0


Query: 1   MSTGRLKDGERRLVIPMPPKPKPETQLATTESNALVEYTPPVKEEDEDLEVKLRRIIDNV 60
           MSTG+LKDG+RRLVIPMPPKPK +TQLATTESNALV YTPPVKEEDEDLEVKLRRIIDNV
Sbjct: 1   MSTGKLKDGDRRLVIPMPPKPKSDTQLATTESNALVAYTPPVKEEDEDLEVKLRRIIDNV 60

Query: 61  PVRVSNTSGSSAGSGSGDFHQYRQMRRKEQDRLARMDVDYQKKKEIAEFNMRREERLKAA 120
           PVRVSNTSGSSAGSGSGDFHQYRQMRRKEQDRLARMDVDYQKKKEIAEFNMRREERLKAA
Sbjct: 61  PVRVSNTSGSSAGSGSGDFHQYRQMRRKEQDRLARMDVDYQKKKEIAEFNMRREERLKAA 120

Query: 121 EERTAKKRLKRQKKKQRRKEKRSKLN-SGGDENQKDESSDDDGDTDNGEDEAT 173
           EERT+KKRLKRQKKKQRRKEK+SKLN SGGDENQKD SS D+GDTDNGEDEAT
Sbjct: 121 EERTSKKRLKRQKKKQRRKEKKSKLNSSGGDENQKDASSGDEGDTDNGEDEAT 173

[Close]

BLAST of Lsi05G002370 vs. NCBI nr
Match: KAG6600308.1 (PRKR-interacting protein 1, partial [Cucurbita argyrosperma subsp. sororia] >KAG7030967.1 PRKR-interacting protein 1 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 282.7 bits (722), Expect = 2.1e-72
Identity = 161/173 (93.06%), Postives = 168/173 (97.11%), Query Frame = 0


Query: 1   MSTGRLKDGERRLVIPMPPKPKPETQLATTESNALVEYTPPVKEEDEDLEVKLRRIIDNV 60
           MS+G+LKDG+RRLVIPMPPKPK +TQLATTE+NALV YTPPVKEEDEDLEVKLRRIIDNV
Sbjct: 1   MSSGKLKDGDRRLVIPMPPKPKSDTQLATTETNALVAYTPPVKEEDEDLEVKLRRIIDNV 60

Query: 61  PVRVSNTSGSSAGSGSGDFHQYRQMRRKEQDRLARMDVDYQKKKEIAEFNMRREERLKAA 120
           PVRVSNTSGSSAGSGSGDFHQYRQMRRKEQDRLARMDVDYQKKKEIAEFNMRREERLKAA
Sbjct: 61  PVRVSNTSGSSAGSGSGDFHQYRQMRRKEQDRLARMDVDYQKKKEIAEFNMRREERLKAA 120

Query: 121 EERTAKKRLKRQKKKQRRKEKRSKLNS-GGDENQKDESSDDDGDTDNGEDEAT 173
           EERT+KKRLKRQKKKQRRKEK+SKLNS GGDENQKD SS DDGDTDNGEDEAT
Sbjct: 121 EERTSKKRLKRQKKKQRRKEKKSKLNSGGGDENQKDASSGDDGDTDNGEDEAT 173

[Close]

BLAST of Lsi05G002370 vs. TAIR 10
Match: AT2G15270.1 (unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1168 (InterPro:IPR009548); Has 1930 Blast hits to 1364 proteins in 219 species: Archae - 0; Bacteria - 44; Metazoa - 762; Fungi - 280; Plants - 96; Viruses - 3; Other Eukaryotes - 745 (source: NCBI BLink). )

HSP 1 Score: 153.7 bits (387), Expect = 1.4e-37
Identity = 102/173 (58.96%), Postives = 133/173 (76.88%), Query Frame = 0


Query: 1   MSTGRLKDGERRLVI-PMPPKPKPETQLAT-TESNALVEYTPPVK-EEDEDLEVKLRRII 60
           MS+G+ K G+ RLV+         E + A    S+++VEY PPV  E++EDLEVKLRRI+
Sbjct: 1   MSSGKPKQGDTRLVVAATTASALMEAKKADHGGSSSIVEYKPPVMLEDEEDLEVKLRRIL 60

Query: 61  DNVPVRVSNTSGSSAGSGSGDFHQYRQMRRKEQDRLARMDVDYQKKKEIAEFNMRREERL 120
           +NVPVRVSNTSGSSAGSGSGDFHQYRQMRR+EQDRL RMD+DY K+ ++AEF +RREE+ 
Sbjct: 61  ENVPVRVSNTSGSSAGSGSGDFHQYRQMRRREQDRLTRMDIDYNKRLKMAEFTIRREEKQ 120

Query: 121 KAAEERTAKKRLKRQKKKQRRKEKRSKLNSGGDENQKDESSDDDGDTDNGEDE 171
           KAAEE+T+KKRLKRQKKKQ+++EK+ K N+  +E ++    +    +D GEDE
Sbjct: 121 KAAEEKTSKKRLKRQKKKQKKQEKKQKPNTTEEEVKQPRVGEI--SSDEGEDE 171

The following BLAST results are available for this feature:

BLAST of Lsi05G002370 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9CWV6	2.4e-07	35.75	PRKR-interacting protein 1 OS=Mus musculus OX=10090 GN=Prkrip1 PE=1 SV=2	[more]
Q2KIT1	1.6e-06	36.21	PRKR-interacting protein 1 OS=Bos taurus OX=9913 GN=PRKRIP1 PE=2 SV=1	[more]
Q9H875	3.5e-06	34.86	PRKR-interacting protein 1 OS=Homo sapiens OX=9606 GN=PRKRIP1 PE=1 SV=1	[more]
Q5R5J3	3.5e-06	34.86	PRKR-interacting protein 1 OS=Pongo abelii OX=9601 GN=PRKRIP1 PE=2 SV=1	[more]
Q5ZKU0	6.0e-06	35.33	PRKR-interacting protein 1 homolog OS=Gallus gallus OX=9031 GN=PRKRIP1 PE=2 SV=1	[more]

BLAST of Lsi05G002370 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3C2Q3	2.0e-76	95.93	PRKR-interacting protein 1 OS=Cucumis melo OX=3656 GN=LOC103496186 PE=4 SV=1	[more]
A0A0A0L705	7.5e-76	95.35	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G199600 PE=4 SV=1	[more]
A0A6J1FTH7	4.5e-73	93.64	PRKR-interacting protein 1 OS=Cucurbita moschata OX=3662 GN=LOC111447158 PE=4 SV...	[more]
A0A6J1D4Z8	1.0e-72	91.86	PRKR-interacting protein 1 OS=Momordica charantia OX=3673 GN=LOC111017661 PE=4 S...	[more]
A0A6J1IY34	2.9e-72	92.49	PRKR-interacting protein 1 OS=Cucurbita maxima OX=3661 GN=LOC111481671 PE=4 SV=1	[more]

BLAST of Lsi05G002370 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038886372.1	6.3e-77	96.51	PRKR-interacting protein 1 [Benincasa hispida]	[more]
XP_008456169.1	4.1e-76	95.93	PREDICTED: PRKR-interacting protein 1 [Cucumis melo]	[more]
XP_011651236.1	1.5e-75	95.35	PRKR-interacting protein 1 [Cucumis sativus] >KGN57498.1 hypothetical protein Cs...	[more]
XP_022941948.1	9.4e-73	93.64	PRKR-interacting protein 1 [Cucurbita moschata]	[more]
KAG6600308.1	2.1e-72	93.06	PRKR-interacting protein 1, partial [Cucurbita argyrosperma subsp. sororia] >KAG...	[more]

BLAST of Lsi05G002370 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G15270.1	1.4e-37	58.96	unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1168...	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 112..146
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 81..126
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 127..142
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 154..172
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 64..78
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..29
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..17
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 64..172
IPR009548	PRKR-interacting protein 1	PFAM	PF06658	DUF1168	coord: 54..169 e-value: 1.9E-28 score: 99.0
IPR009548	PRKR-interacting protein 1	PANTHER	PTHR13507	UNCHARACTERIZED	coord: 10..170

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi05G002370.1	Lsi05G002370.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006469	negative regulation of protein kinase activity
cellular_component	GO:0005730	nucleolus
molecular_function	GO:0003725	double-stranded RNA binding
molecular_function	GO:0019901	protein kinase binding
molecular_function	GO:0004860	protein kinase inhibitor activity