Lsi05G001840 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi05G001840
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Maternal effect embryo arrest 9
Location	chr05: 2639341 .. 2639784 (-)
RNA-Seq Expression	Lsi05G001840
Synteny	Lsi05G001840

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGCTCTCATCTCCCAGTTTACCTTCCTCTCCGATCAAGCTCTAAACGACAAGAATTTCGATCCCTCCACCATTGAAGACCTCATGAAGCTCTTCGAGATCGAAGCTTACAAGTCCTGGGCCGCCATTGAGCTCCAACACCAGAACGAGGTTCAAGACGCCGAGATCGCCATGCAGCAGGCTGAGGATTATCTCGATTCCGTCATGGAAGACGCCATGGATGAGTTCAGACGGTTCGAGGAGGAGTTCGATCGGATGGCTGAAGCTGAACTCCAGGAACTCCTTGACAAATCTGAGAAGGCTCGCAAGATGGGCAGTTTGATGGAGAAGGCTGCGGCGGTTGCTTCCAAGAGGTACATGGAAGCAGCCATGAATTCCGCCACCGCTTCCATGAGATCCGCCTGGAAGGCTATTTCCTCCAATAAGGTTCATCCTTCTTGA

mRNA sequence

ATGGAAGCTCTCATCTCCCAGTTTACCTTCCTCTCCGATCAAGCTCTAAACGACAAGAATTTCGATCCCTCCACCATTGAAGACCTCATGAAGCTCTTCGAGATCGAAGCTTACAAGTCCTGGGCCGCCATTGAGCTCCAACACCAGAACGAGGTTCAAGACGCCGAGATCGCCATGCAGCAGGCTGAGGATTATCTCGATTCCGTCATGGAAGACGCCATGGATGAGTTCAGACGGTTCGAGGAGGAGTTCGATCGGATGGCTGAAGCTGAACTCCAGGAACTCCTTGACAAATCTGAGAAGGCTCGCAAGATGGGCAGTTTGATGGAGAAGGCTGCGGCGGTTGCTTCCAAGAGGTACATGGAAGCAGCCATGAATTCCGCCACCGCTTCCATGAGATCCGCCTGGAAGGCTATTTCCTCCAATAAGGTTCATCCTTCTTGA

Coding sequence (CDS)

ATGGAAGCTCTCATCTCCCAGTTTACCTTCCTCTCCGATCAAGCTCTAAACGACAAGAATTTCGATCCCTCCACCATTGAAGACCTCATGAAGCTCTTCGAGATCGAAGCTTACAAGTCCTGGGCCGCCATTGAGCTCCAACACCAGAACGAGGTTCAAGACGCCGAGATCGCCATGCAGCAGGCTGAGGATTATCTCGATTCCGTCATGGAAGACGCCATGGATGAGTTCAGACGGTTCGAGGAGGAGTTCGATCGGATGGCTGAAGCTGAACTCCAGGAACTCCTTGACAAATCTGAGAAGGCTCGCAAGATGGGCAGTTTGATGGAGAAGGCTGCGGCGGTTGCTTCCAAGAGGTACATGGAAGCAGCCATGAATTCCGCCACCGCTTCCATGAGATCCGCCTGGAAGGCTATTTCCTCCAATAAGGTTCATCCTTCTTGA

Protein sequence

MEALISQFTFLSDQALNDKNFDPSTIEDLMKLFEIEAYKSWAAIELQHQNEVQDAEIAMQQAEDYLDSVMEDAMDEFRRFEEEFDRMAEAELQELLDKSEKARKMGSLMEKAAAVASKRYMEAAMNSATASMRSAWKAISSNKVHPS

Homology

[Close]

BLAST of Lsi05G001840 vs. ExPASy TrEMBL
Match: A0A0A0LAB6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G214020 PE=4 SV=1)

HSP 1 Score: 265.8 bits (678), Expect = 1.1e-67
Identity = 144/147 (97.96%), Postives = 147/147 (100.00%), Query Frame = 0


Query: 1   MEALISQFTFLSDQALNDKNFDPSTIEDLMKLFEIEAYKSWAAIELQHQNEVQDAEIAMQ 60
           MEALISQFTFLSDQAL+DKNFDPSTIEDLMKLFEIEAYKSWAAIELQHQNEVQDAEIAMQ
Sbjct: 1   MEALISQFTFLSDQALHDKNFDPSTIEDLMKLFEIEAYKSWAAIELQHQNEVQDAEIAMQ 60

Query: 61  QAEDYLDSVMEDAMDEFRRFEEEFDRMAEAELQELLDKSEKARKMGSLMEKAAAVASKRY 120
           QAEDYLDSVMEDAMDEFRRFEEEFDRMAEAELQ+LLDKSEKARKMGSLMEKAA+VASKRY
Sbjct: 61  QAEDYLDSVMEDAMDEFRRFEEEFDRMAEAELQQLLDKSEKARKMGSLMEKAASVASKRY 120

Query: 121 MEAAMNSATASMRSAWKAISSNKVHPS 148
           MEAAMNSATASMRSAWKAISSNKVHPS
Sbjct: 121 MEAAMNSATASMRSAWKAISSNKVHPS 147

[Close]

BLAST of Lsi05G001840 vs. ExPASy TrEMBL
Match: A0A6J1FR93 (uncharacterized protein LOC111447720 OS=Cucurbita moschata OX=3662 GN=LOC111447720 PE=4 SV=1)

HSP 1 Score: 258.5 bits (659), Expect = 1.7e-65
Identity = 139/147 (94.56%), Postives = 144/147 (97.96%), Query Frame = 0


Query: 1   MEALISQFTFLSDQALNDKNFDPSTIEDLMKLFEIEAYKSWAAIELQHQNEVQDAEIAMQ 60
           MEALISQFTFLSD+AL DKNFDPSTIEDLMKLFEIEAY SWAA+ELQHQNE +DAEIAMQ
Sbjct: 1   MEALISQFTFLSDRALQDKNFDPSTIEDLMKLFEIEAYNSWAALELQHQNETRDAEIAMQ 60

Query: 61  QAEDYLDSVMEDAMDEFRRFEEEFDRMAEAELQELLDKSEKARKMGSLMEKAAAVASKRY 120
           QAEDYLDSVMEDAMDEFRRFEEEFDRMAEAELQ+L+DKSEKARKMGSLMEKAAAVASKRY
Sbjct: 61  QAEDYLDSVMEDAMDEFRRFEEEFDRMAEAELQDLIDKSEKARKMGSLMEKAAAVASKRY 120

Query: 121 MEAAMNSATASMRSAWKAISSNKVHPS 148
           MEAAMNSATASMRSAWKAISSNKVHPS
Sbjct: 121 MEAAMNSATASMRSAWKAISSNKVHPS 147

[Close]

BLAST of Lsi05G001840 vs. ExPASy TrEMBL
Match: A0A5D3BKS0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold252G00220 PE=4 SV=1)

HSP 1 Score: 257.3 bits (656), Expect = 3.9e-65
Identity = 139/147 (94.56%), Postives = 142/147 (96.60%), Query Frame = 0


Query: 1   MEALISQFTFLSDQALNDKNFDPSTIEDLMKLFEIEAYKSWAAIELQHQNEVQDAEIAMQ 60
           MEALIS FTFLSDQ L+DKNFDPSTIEDLMKLFEIE YKSWAAIELQHQNE QDAEIAMQ
Sbjct: 1   MEALISHFTFLSDQVLHDKNFDPSTIEDLMKLFEIEGYKSWAAIELQHQNEFQDAEIAMQ 60

Query: 61  QAEDYLDSVMEDAMDEFRRFEEEFDRMAEAELQELLDKSEKARKMGSLMEKAAAVASKRY 120
           QAEDYLDSVMEDAMDEFRRFEEEFDRMAEAELQ+LLDKSEKARKMGSLMEKA +VASKRY
Sbjct: 61  QAEDYLDSVMEDAMDEFRRFEEEFDRMAEAELQQLLDKSEKARKMGSLMEKAVSVASKRY 120

Query: 121 MEAAMNSATASMRSAWKAISSNKVHPS 148
           MEAAMNSATASMRSAWKAISSNKVHPS
Sbjct: 121 MEAAMNSATASMRSAWKAISSNKVHPS 147

[Close]

BLAST of Lsi05G001840 vs. ExPASy TrEMBL
Match: A0A6J1JCA1 (uncharacterized protein LOC111483158 OS=Cucurbita maxima OX=3661 GN=LOC111483158 PE=4 SV=1)

HSP 1 Score: 255.4 bits (651), Expect = 1.5e-64
Identity = 139/147 (94.56%), Postives = 143/147 (97.28%), Query Frame = 0


Query: 1   MEALISQFTFLSDQALNDKNFDPSTIEDLMKLFEIEAYKSWAAIELQHQNEVQDAEIAMQ 60
           MEALISQFTFLSDQAL+DKNFDPSTIEDLMKLFEIEAYKSWAA ELQ QNE Q+AEIAMQ
Sbjct: 1   MEALISQFTFLSDQALHDKNFDPSTIEDLMKLFEIEAYKSWAASELQLQNEAQEAEIAMQ 60

Query: 61  QAEDYLDSVMEDAMDEFRRFEEEFDRMAEAELQELLDKSEKARKMGSLMEKAAAVASKRY 120
           QAEDYLDSVMEDAMDEFRRFEEEFDRMAE ELQEL+DKSEKARKMGSLMEKAAA+ASKRY
Sbjct: 61  QAEDYLDSVMEDAMDEFRRFEEEFDRMAETELQELVDKSEKARKMGSLMEKAAAIASKRY 120

Query: 121 MEAAMNSATASMRSAWKAISSNKVHPS 148
           MEAAMNSATASMRSAWKAISSNKVHPS
Sbjct: 121 MEAAMNSATASMRSAWKAISSNKVHPS 147

[Close]

BLAST of Lsi05G001840 vs. ExPASy TrEMBL
Match: A0A6J1E4Z9 (uncharacterized protein LOC111430656 OS=Cucurbita moschata OX=3662 GN=LOC111430656 PE=4 SV=1)

HSP 1 Score: 255.4 bits (651), Expect = 1.5e-64
Identity = 140/147 (95.24%), Postives = 143/147 (97.28%), Query Frame = 0


Query: 1   MEALISQFTFLSDQALNDKNFDPSTIEDLMKLFEIEAYKSWAAIELQHQNEVQDAEIAMQ 60
           MEALISQFTFLSDQAL DKNFDPSTIEDLMKLFEIEAYKSWAA ELQ QNE Q+AEIAMQ
Sbjct: 1   MEALISQFTFLSDQALRDKNFDPSTIEDLMKLFEIEAYKSWAASELQLQNEAQEAEIAMQ 60

Query: 61  QAEDYLDSVMEDAMDEFRRFEEEFDRMAEAELQELLDKSEKARKMGSLMEKAAAVASKRY 120
           +AEDYLDSVMEDAMDEFRRFEEEFDRMAEAELQEL+DKSEKARKMGSLMEKAAAVASKRY
Sbjct: 61  KAEDYLDSVMEDAMDEFRRFEEEFDRMAEAELQELVDKSEKARKMGSLMEKAAAVASKRY 120

Query: 121 MEAAMNSATASMRSAWKAISSNKVHPS 148
           MEAAMNSATASMRSAWKAISSNKVHPS
Sbjct: 121 MEAAMNSATASMRSAWKAISSNKVHPS 147

[Close]

BLAST of Lsi05G001840 vs. NCBI nr
Match: XP_004149957.1 (uncharacterized protein LOC101218253 [Cucumis sativus] >KGN57562.1 hypothetical protein Csa_011667 [Cucumis sativus])

HSP 1 Score: 265.8 bits (678), Expect = 2.3e-67
Identity = 144/147 (97.96%), Postives = 147/147 (100.00%), Query Frame = 0


Query: 1   MEALISQFTFLSDQALNDKNFDPSTIEDLMKLFEIEAYKSWAAIELQHQNEVQDAEIAMQ 60
           MEALISQFTFLSDQAL+DKNFDPSTIEDLMKLFEIEAYKSWAAIELQHQNEVQDAEIAMQ
Sbjct: 1   MEALISQFTFLSDQALHDKNFDPSTIEDLMKLFEIEAYKSWAAIELQHQNEVQDAEIAMQ 60

Query: 61  QAEDYLDSVMEDAMDEFRRFEEEFDRMAEAELQELLDKSEKARKMGSLMEKAAAVASKRY 120
           QAEDYLDSVMEDAMDEFRRFEEEFDRMAEAELQ+LLDKSEKARKMGSLMEKAA+VASKRY
Sbjct: 61  QAEDYLDSVMEDAMDEFRRFEEEFDRMAEAELQQLLDKSEKARKMGSLMEKAASVASKRY 120

Query: 121 MEAAMNSATASMRSAWKAISSNKVHPS 148
           MEAAMNSATASMRSAWKAISSNKVHPS
Sbjct: 121 MEAAMNSATASMRSAWKAISSNKVHPS 147

[Close]

BLAST of Lsi05G001840 vs. NCBI nr
Match: XP_038885707.1 (uncharacterized protein LOC120075975 [Benincasa hispida])

HSP 1 Score: 265.0 bits (676), Expect = 3.8e-67
Identity = 144/147 (97.96%), Postives = 146/147 (99.32%), Query Frame = 0


Query: 1   MEALISQFTFLSDQALNDKNFDPSTIEDLMKLFEIEAYKSWAAIELQHQNEVQDAEIAMQ 60
           MEALISQFTFLSDQAL+DKNFDPSTIEDLMKLFEIEAYKSWAA+ELQHQNEVQDAEIAM 
Sbjct: 1   MEALISQFTFLSDQALHDKNFDPSTIEDLMKLFEIEAYKSWAAMELQHQNEVQDAEIAMH 60

Query: 61  QAEDYLDSVMEDAMDEFRRFEEEFDRMAEAELQELLDKSEKARKMGSLMEKAAAVASKRY 120
           QAEDYLDSVMEDAMDEFRRFEEEFDRMAEAELQELLDKSEKARKMGSLMEKAAAVASKRY
Sbjct: 61  QAEDYLDSVMEDAMDEFRRFEEEFDRMAEAELQELLDKSEKARKMGSLMEKAAAVASKRY 120

Query: 121 MEAAMNSATASMRSAWKAISSNKVHPS 148
           MEAAMNSATASMRSAWKAISSNKVHPS
Sbjct: 121 MEAAMNSATASMRSAWKAISSNKVHPS 147

[Close]

BLAST of Lsi05G001840 vs. NCBI nr
Match: XP_022942791.1 (uncharacterized protein LOC111447720 [Cucurbita moschata] >XP_022942792.1 uncharacterized protein LOC111447720 [Cucurbita moschata])

HSP 1 Score: 258.5 bits (659), Expect = 3.6e-65
Identity = 139/147 (94.56%), Postives = 144/147 (97.96%), Query Frame = 0


Query: 1   MEALISQFTFLSDQALNDKNFDPSTIEDLMKLFEIEAYKSWAAIELQHQNEVQDAEIAMQ 60
           MEALISQFTFLSD+AL DKNFDPSTIEDLMKLFEIEAY SWAA+ELQHQNE +DAEIAMQ
Sbjct: 1   MEALISQFTFLSDRALQDKNFDPSTIEDLMKLFEIEAYNSWAALELQHQNETRDAEIAMQ 60

Query: 61  QAEDYLDSVMEDAMDEFRRFEEEFDRMAEAELQELLDKSEKARKMGSLMEKAAAVASKRY 120
           QAEDYLDSVMEDAMDEFRRFEEEFDRMAEAELQ+L+DKSEKARKMGSLMEKAAAVASKRY
Sbjct: 61  QAEDYLDSVMEDAMDEFRRFEEEFDRMAEAELQDLIDKSEKARKMGSLMEKAAAVASKRY 120

Query: 121 MEAAMNSATASMRSAWKAISSNKVHPS 148
           MEAAMNSATASMRSAWKAISSNKVHPS
Sbjct: 121 MEAAMNSATASMRSAWKAISSNKVHPS 147

[Close]

BLAST of Lsi05G001840 vs. NCBI nr
Match: XP_023533822.1 (uncharacterized protein LOC111795549 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 257.3 bits (656), Expect = 8.0e-65
Identity = 139/147 (94.56%), Postives = 144/147 (97.96%), Query Frame = 0


Query: 1   MEALISQFTFLSDQALNDKNFDPSTIEDLMKLFEIEAYKSWAAIELQHQNEVQDAEIAMQ 60
           MEALISQFTFLSD+AL DKNFDPSTIEDLMKLFEIEAY SWAA+ELQHQNEV+DAEIAMQ
Sbjct: 90  MEALISQFTFLSDRALQDKNFDPSTIEDLMKLFEIEAYNSWAAMELQHQNEVRDAEIAMQ 149

Query: 61  QAEDYLDSVMEDAMDEFRRFEEEFDRMAEAELQELLDKSEKARKMGSLMEKAAAVASKRY 120
           QAEDYLDSVMEDAMDEFRRFEEEFDRMAEAELQ+L+DKSEKARKMG LMEKAAAVASKRY
Sbjct: 150 QAEDYLDSVMEDAMDEFRRFEEEFDRMAEAELQDLVDKSEKARKMGRLMEKAAAVASKRY 209

Query: 121 MEAAMNSATASMRSAWKAISSNKVHPS 148
           MEAAMNSATASMRSAWKAISSNKVHPS
Sbjct: 210 MEAAMNSATASMRSAWKAISSNKVHPS 236

[Close]

BLAST of Lsi05G001840 vs. NCBI nr
Match: TYJ99746.1 (uncharacterized protein E5676_scaffold252G00220 [Cucumis melo var. makuwa])

HSP 1 Score: 257.3 bits (656), Expect = 8.0e-65
Identity = 139/147 (94.56%), Postives = 142/147 (96.60%), Query Frame = 0


Query: 1   MEALISQFTFLSDQALNDKNFDPSTIEDLMKLFEIEAYKSWAAIELQHQNEVQDAEIAMQ 60
           MEALIS FTFLSDQ L+DKNFDPSTIEDLMKLFEIE YKSWAAIELQHQNE QDAEIAMQ
Sbjct: 1   MEALISHFTFLSDQVLHDKNFDPSTIEDLMKLFEIEGYKSWAAIELQHQNEFQDAEIAMQ 60

Query: 61  QAEDYLDSVMEDAMDEFRRFEEEFDRMAEAELQELLDKSEKARKMGSLMEKAAAVASKRY 120
           QAEDYLDSVMEDAMDEFRRFEEEFDRMAEAELQ+LLDKSEKARKMGSLMEKA +VASKRY
Sbjct: 61  QAEDYLDSVMEDAMDEFRRFEEEFDRMAEAELQQLLDKSEKARKMGSLMEKAVSVASKRY 120

Query: 121 MEAAMNSATASMRSAWKAISSNKVHPS 148
           MEAAMNSATASMRSAWKAISSNKVHPS
Sbjct: 121 MEAAMNSATASMRSAWKAISSNKVHPS 147

[Close]

BLAST of Lsi05G001840 vs. TAIR 10
Match: AT1G60870.1 (maternal effect embryo arrest 9 )

HSP 1 Score: 162.5 bits (410), Expect = 2.5e-40
Identity = 90/147 (61.22%), Postives = 116/147 (78.91%), Query Frame = 0


Query: 1   MEALISQFTFLSDQALNDKNFDPSTIEDLMKLFEIEAYKSWAAIELQHQNEVQDAEIAMQ 60
           MEALI  FT LSDQAL DK FDPS IEDLM+LFE+++YK+WAA+E + Q E+++AE +++
Sbjct: 1   MEALIHHFTLLSDQALVDKTFDPSRIEDLMRLFEVDSYKAWAALESEQQQELEEAEESLR 60

Query: 61  QAEDYLDSVMEDAMDEFRRFEEEFDRMAEAELQELLDKSEKARKMGSLMEKAAAVASKRY 120
           +AE  LD  ME  M+E+RR  EE +RM  AEL+EL +K+E AR+ G+LMEKAA VA+KR+
Sbjct: 61  EAELELDRDMEWGMEEYRRTLEEMERMEAAELKELEEKAETARRTGNLMEKAATVAAKRH 120

Query: 121 MEAAMNSATASMRSAWKAISSNKVHPS 148
           + AAM SA ASMRSAWK  + NKVHPS
Sbjct: 121 IAAAMGSAAASMRSAWKTAAGNKVHPS 147

The following BLAST results are available for this feature:

BLAST of Lsi05G001840 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi05G001840 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LAB6	1.1e-67	97.96	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G214020 PE=4 SV=1	[more]
A0A6J1FR93	1.7e-65	94.56	uncharacterized protein LOC111447720 OS=Cucurbita moschata OX=3662 GN=LOC1114477...	[more]
A0A5D3BKS0	3.9e-65	94.56	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A6J1JCA1	1.5e-64	94.56	uncharacterized protein LOC111483158 OS=Cucurbita maxima OX=3661 GN=LOC111483158...	[more]
A0A6J1E4Z9	1.5e-64	95.24	uncharacterized protein LOC111430656 OS=Cucurbita moschata OX=3662 GN=LOC1114306...	[more]

BLAST of Lsi05G001840 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004149957.1	2.3e-67	97.96	uncharacterized protein LOC101218253 [Cucumis sativus] >KGN57562.1 hypothetical ...	[more]
XP_038885707.1	3.8e-67	97.96	uncharacterized protein LOC120075975 [Benincasa hispida]	[more]
XP_022942791.1	3.6e-65	94.56	uncharacterized protein LOC111447720 [Cucurbita moschata] >XP_022942792.1 unchar...	[more]
XP_023533822.1	8.0e-65	94.56	uncharacterized protein LOC111795549 isoform X2 [Cucurbita pepo subsp. pepo]	[more]
TYJ99746.1	8.0e-65	94.56	uncharacterized protein E5676_scaffold252G00220 [Cucumis melo var. makuwa]	[more]

BLAST of Lsi05G001840 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G60870.1	2.5e-40	61.22	maternal effect embryo arrest 9	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 52..90
None	No IPR available	PANTHER	PTHR37707	MATERNAL EFFECT EMBRYO ARREST 9	coord: 1..147

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi05G001840.1	Lsi05G001840.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0009793	embryo development ending in seed dormancy
biological_process	GO:0009555	pollen development
cellular_component	GO:0009506	plasmodesma
molecular_function	GO:0003676	nucleic acid binding