Lsi05G001640 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi05G001640
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Ferredoxin
Location	chr05: 2379460 .. 2379891 (-)
RNA-Seq Expression	Lsi05G001640
Synteny	Lsi05G001640

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCAGCCTCATCACCACCACTTCCTTCCTCTGGTCCCAGCCACCGGCCGCGACGTTGAGGCTGGTGCCTAATGTGGGTGAGCGCTTGTTCGGGTTGCAGAAGGGAGGGAGCCGAGGCGGGCGAGTGACGGCGATGGCAACATACAAGGTGAAGCTAATAACACCAAGTGGAGAGAAAGTTGTCGAGTGTCCGGATAACGAGTACATTCTAGATGCGGCGGAGAACGATGGGATCGACCTTCCATTCTCATGTAGAGCAGGAGCATGTTCTGCTTGTGTAGGAAAATTGAAATCAGGGAAAGTGGATCAGTCAGATGTTAGCTTCCTTGATGAAGATCAGATTGCACAAGGCTGGGTTCTTACTTGTTTGGCTACTCCTCTCTCTGATGTTGTTATTGAGACAGATAAGGAGGAGGAATTTTCAAGTTAA

mRNA sequence

ATGGCCAGCCTCATCACCACCACTTCCTTCCTCTGGTCCCAGCCACCGGCCGCGACGTTGAGGCTGGTGCCTAATGTGGGTGAGCGCTTGTTCGGGTTGCAGAAGGGAGGGAGCCGAGGCGGGCGAGTGACGGCGATGGCAACATACAAGGTGAAGCTAATAACACCAAGTGGAGAGAAAGTTGTCGAGTGTCCGGATAACGAGTACATTCTAGATGCGGCGGAGAACGATGGGATCGACCTTCCATTCTCATGTAGAGCAGGAGCATGTTCTGCTTGTGTAGGAAAATTGAAATCAGGGAAAGTGGATCAGTCAGATGTTAGCTTCCTTGATGAAGATCAGATTGCACAAGGCTGGGTTCTTACTTGTTTGGCTACTCCTCTCTCTGATGTTGTTATTGAGACAGATAAGGAGGAGGAATTTTCAAGTTAA

Coding sequence (CDS)

ATGGCCAGCCTCATCACCACCACTTCCTTCCTCTGGTCCCAGCCACCGGCCGCGACGTTGAGGCTGGTGCCTAATGTGGGTGAGCGCTTGTTCGGGTTGCAGAAGGGAGGGAGCCGAGGCGGGCGAGTGACGGCGATGGCAACATACAAGGTGAAGCTAATAACACCAAGTGGAGAGAAAGTTGTCGAGTGTCCGGATAACGAGTACATTCTAGATGCGGCGGAGAACGATGGGATCGACCTTCCATTCTCATGTAGAGCAGGAGCATGTTCTGCTTGTGTAGGAAAATTGAAATCAGGGAAAGTGGATCAGTCAGATGTTAGCTTCCTTGATGAAGATCAGATTGCACAAGGCTGGGTTCTTACTTGTTTGGCTACTCCTCTCTCTGATGTTGTTATTGAGACAGATAAGGAGGAGGAATTTTCAAGTTAA

Protein sequence

MASLITTTSFLWSQPPAATLRLVPNVGERLFGLQKGGSRGGRVTAMATYKVKLITPSGEKVVECPDNEYILDAAENDGIDLPFSCRAGACSACVGKLKSGKVDQSDVSFLDEDQIAQGWVLTCLATPLSDVVIETDKEEEFSS

Homology

[Close]

BLAST of Lsi05G001640 vs. ExPASy Swiss-Prot
Match: P16972 (Ferredoxin-2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=FD2 PE=1 SV=1)

HSP 1 Score: 175.6 bits (444), Expect = 3.9e-43
Identity = 87/141 (61.70%), Postives = 107/141 (75.89%), Query Frame = 0


Query: 1   MASLITTTSFLWSQPPAATLRLVPNVG-ERLFGLQKGGSRGGRVTAMATYKVKLITPSGE 60
           ++S I  TSF+   P   +LR +P+   + LFGL+ G +RGGRVTAMATYKVK ITP GE
Sbjct: 6   LSSAIVGTSFIRRSPAPISLRSLPSANTQSLFGLKSGTARGGRVTAMATYKVKFITPEGE 65

Query: 61  KVVECPDNEYILDAAENDGIDLPFSCRAGACSACVGKLKSGKVDQSDVSFLDEDQIAQGW 120
             VEC D+ Y+LDAAE  GIDLP+SCRAG+CS+C GK+ SG VDQSD SFLD++QI +G+
Sbjct: 66  LEVECDDDVYVLDAAEEAGIDLPYSCRAGSCSSCAGKVVSGSVDQSDQSFLDDEQIGEGF 125

Query: 121 VLTCLATPLSDVVIETDKEEE 141
           VLTC A P SDV IET KEE+
Sbjct: 126 VLTCAAYPTSDVTIETHKEED 146

[Close]

BLAST of Lsi05G001640 vs. ExPASy Swiss-Prot
Match: O04090 (Ferredoxin-1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=FD1 PE=1 SV=1)

HSP 1 Score: 172.6 bits (436), Expect = 3.3e-42
Identity = 84/140 (60.00%), Postives = 109/140 (77.86%), Query Frame = 0


Query: 1   MASLITTTSFLWSQPPAATLRLVPNVG-ERLFGLQKGGSRGGRVTAMATYKVKLITPSGE 60
           ++S I +TSFL  Q    +LR +P    + LFGL+   +RGGRVTAMATYKVK ITP GE
Sbjct: 6   LSSAIVSTSFLRRQQTPISLRSLPFANTQSLFGLKSSTARGGRVTAMATYKVKFITPEGE 65

Query: 61  KVVECPDNEYILDAAENDGIDLPFSCRAGACSACVGKLKSGKVDQSDVSFLDEDQIAQGW 120
           + VEC ++ Y+LDAAE  G+DLP+SCRAG+CS+C GK+ SG +DQSD SFLD++Q+++G+
Sbjct: 66  QEVECEEDVYVLDAAEEAGLDLPYSCRAGSCSSCAGKVVSGSIDQSDQSFLDDEQMSEGY 125

Query: 121 VLTCLATPLSDVVIETDKEE 140
           VLTC+A P SDVVIET KEE
Sbjct: 126 VLTCVAYPTSDVVIETHKEE 145

[Close]

BLAST of Lsi05G001640 vs. ExPASy Swiss-Prot
Match: O04683 (Ferredoxin-1, chloroplastic OS=Mesembryanthemum crystallinum OX=3544 PE=2 SV=1)

HSP 1 Score: 169.5 bits (428), Expect = 2.8e-41
Identity = 84/137 (61.31%), Postives = 102/137 (74.45%), Query Frame = 0


Query: 7   TTSFLWSQPPAATLRLVPNVGERLFGLQKGGSRGGRVTAMATYKVKLITPSGEKVVECPD 66
           +T+F    PP  T  L  NVG  LFGL+   SR GRVTAMA YKV L+TP G++ +ECPD
Sbjct: 14  STAFAPKTPP-MTAALPTNVGRALFGLKSSASR-GRVTAMAAYKVTLVTPEGKQELECPD 73

Query: 67  NEYILDAAENDGIDLPFSCRAGACSACVGKLKSGKVDQSDVSFLDEDQIAQGWVLTCLAT 126
           + YILDAAE  GIDLP+SCRAG+CS+C GK+ SG V+Q D SFLD+DQI +GWVLTC+A 
Sbjct: 74  DVYILDAAEEAGIDLPYSCRAGSCSSCAGKVTSGSVNQDDGSFLDDDQIKEGWVLTCVAY 133

Query: 127 PLSDVVIETDKEEEFSS 144
           P  DV IET KEEE ++
Sbjct: 134 PTGDVTIETHKEEELTA 148

[Close]

BLAST of Lsi05G001640 vs. ExPASy Swiss-Prot
Match: Q43517 (Ferredoxin-1, chloroplastic OS=Solanum lycopersicum OX=4081 GN=SEND33 PE=2 SV=1)

HSP 1 Score: 169.5 bits (428), Expect = 2.8e-41
Identity = 83/143 (58.04%), Postives = 106/143 (74.13%), Query Frame = 0


Query: 1   MASLITTTSFLWSQPPAATLRLVPNVGERLFGLQKGGSRGGRVTAMATYKVKLITPSGEK 60
           ++  + +TSFL  +P   +L+ + NVGE LFGL+ G  R GR+T MA+YKVKLITP G  
Sbjct: 4   ISGTMISTSFLPRKPAVTSLKAISNVGEALFGLKSG--RNGRITCMASYKVKLITPEGPI 63

Query: 61  VVECPDNEYILDAAENDGIDLPFSCRAGACSACVGKLKSGKVDQSDVSFLDEDQIAQGWV 120
             ECPD+ YILD AE +G DLP+SCRAG+CS+C GK+ +G VDQSD +FLDEDQ A G+V
Sbjct: 64  EFECPDDVYILDQAEEEGHDLPYSCRAGSCSSCAGKVTAGSVDQSDGNFLDEDQEAAGFV 123

Query: 121 LTCLATPLSDVVIETDKEEEFSS 144
           LTC+A P  DV IET KEEE ++
Sbjct: 124 LTCVAYPKGDVTIETHKEEELTA 144

[Close]

BLAST of Lsi05G001640 vs. ExPASy Swiss-Prot
Match: Q9ZTS2 (Ferredoxin, chloroplastic OS=Capsicum annuum OX=4072 GN=AP1 PE=1 SV=1)

HSP 1 Score: 169.1 bits (427), Expect = 3.7e-41
Identity = 80/140 (57.14%), Postives = 105/140 (75.00%), Query Frame = 0


Query: 1   MASLITTTSFLWSQPPAATLRLVPNVGERLFGLQKGGSRGGRVTAMATYKVKLITPSGEK 60
           +++ + +TSF+  +P   +L+ +PNVGE LFGL+   + GG+VT MA+YKVKLITP G  
Sbjct: 4   VSATMISTSFMPRKPAVTSLKPIPNVGEALFGLK--SANGGKVTCMASYKVKLITPDGPI 63

Query: 61  VVECPDNEYILDAAENDGIDLPFSCRAGACSACVGKLKSGKVDQSDVSFLDEDQIAQGWV 120
             +CPDN YILD AE  G DLP+SCRAG+CS+C GK+  G VDQ+D +FLD+DQ+ +GWV
Sbjct: 64  EFDCPDNVYILDQAEEAGHDLPYSCRAGSCSSCAGKIAGGAVDQTDGNFLDDDQLEEGWV 123

Query: 121 LTCLATPLSDVVIETDKEEE 141
           LTC+A P SDV IET KE E
Sbjct: 124 LTCVAYPQSDVTIETHKEAE 141

[Close]

BLAST of Lsi05G001640 vs. ExPASy TrEMBL
Match: A0A6J1C4E2 (Ferredoxin OS=Momordica charantia OX=3673 GN=LOC111008271 PE=3 SV=1)

HSP 1 Score: 205.7 bits (522), Expect = 1.3e-49
Identity = 104/134 (77.61%), Postives = 115/134 (85.82%), Query Frame = 0


Query: 8   TSFLWSQPPAATLRLVPNVGERLFGLQKGGSRGGRVTAMATYKVKLITPSGEKVVECPDN 67
           TSFL +  P    R V NVGE LFGLQKG SR GRVTAMATYKVKLITPSGEKVV+C D+
Sbjct: 13  TSFLGTARP----RPVSNVGEGLFGLQKGCSRSGRVTAMATYKVKLITPSGEKVVDCLDS 72

Query: 68  EYILDAAENDGIDLPFSCRAGACSACVGKLKSGKVDQSDVSFLDEDQIAQGWVLTCLATP 127
           +YILDAAE  G++LP SCRAGACS+CVGKLKSGK+DQSDVSFLDEDQI +GWVLTCLA+P
Sbjct: 73  DYILDAAEAKGLELPHSCRAGACSSCVGKLKSGKLDQSDVSFLDEDQIEEGWVLTCLASP 132

Query: 128 LSDVVIETDKEEEF 142
           +SDVVIET K EEF
Sbjct: 133 MSDVVIETHKAEEF 142

[Close]

BLAST of Lsi05G001640 vs. ExPASy TrEMBL
Match: A0A5A7TC46 (Ferredoxin OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold84G00430 PE=3 SV=1)

HSP 1 Score: 202.6 bits (514), Expect = 1.1e-48
Identity = 100/139 (71.94%), Postives = 117/139 (84.17%), Query Frame = 0


Query: 5   ITTTSFLWSQPPAATLRLVPNVGERLFGLQKGGSRGGRVTAMATYKVKLITPSGEKVVEC 64
           ITTTSFL  Q    TLR  PNVGE LFGLQK   RG RVTAMATYKVKLITPSG K ++C
Sbjct: 6   ITTTSFLRYQLLTTTLRSAPNVGECLFGLQK---RGSRVTAMATYKVKLITPSGVKEIKC 65

Query: 65  PDNEYILDAAENDGIDLPFSCRAGACSACVGKLKSGKVDQSDVSFLDEDQIAQGWVLTCL 124
           PD+ YIL+ AE++G+DLP+SCRAGACS+C GKL SGKVDQS++SFLD+DQIA+GWV+ C+
Sbjct: 66  PDDNYILNVAEDEGLDLPYSCRAGACSSCAGKLISGKVDQSNISFLDDDQIAKGWVINCM 125

Query: 125 ATPLSDVVIETDKEEEFSS 144
           A PLSDVVIET KEEEF++
Sbjct: 126 AYPLSDVVIETHKEEEFTN 141

[Close]

BLAST of Lsi05G001640 vs. ExPASy TrEMBL
Match: A0A1S3C2Q0 (Ferredoxin OS=Cucumis melo OX=3656 GN=LOC103496218 PE=3 SV=1)

HSP 1 Score: 202.6 bits (514), Expect = 1.1e-48
Identity = 100/139 (71.94%), Postives = 117/139 (84.17%), Query Frame = 0


Query: 5   ITTTSFLWSQPPAATLRLVPNVGERLFGLQKGGSRGGRVTAMATYKVKLITPSGEKVVEC 64
           ITTTSFL  Q    TLR  PNVGE LFGLQK   RG RVTAMATYKVKLITPSG K ++C
Sbjct: 6   ITTTSFLRYQLLTTTLRSAPNVGECLFGLQK---RGSRVTAMATYKVKLITPSGVKEIKC 65

Query: 65  PDNEYILDAAENDGIDLPFSCRAGACSACVGKLKSGKVDQSDVSFLDEDQIAQGWVLTCL 124
           PD+ YIL+ AE++G+DLP+SCRAGACS+C GKL SGKVDQS++SFLD+DQIA+GWV+ C+
Sbjct: 66  PDDNYILNVAEDEGLDLPYSCRAGACSSCAGKLISGKVDQSNISFLDDDQIAKGWVINCM 125

Query: 125 ATPLSDVVIETDKEEEFSS 144
           A PLSDVVIET KEEEF++
Sbjct: 126 AYPLSDVVIETHKEEEFTN 141

[Close]

BLAST of Lsi05G001640 vs. ExPASy TrEMBL
Match: A0A5D3CLT7 (Ferredoxin OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold227G00150 PE=3 SV=1)

HSP 1 Score: 201.1 bits (510), Expect = 3.2e-48
Identity = 100/139 (71.94%), Postives = 116/139 (83.45%), Query Frame = 0


Query: 5   ITTTSFLWSQPPAATLRLVPNVGERLFGLQKGGSRGGRVTAMATYKVKLITPSGEKVVEC 64
           ITTTSFL  Q    TLR  PNVGE LFGLQK   RG RVTAMATYKVKLITPSG K ++C
Sbjct: 6   ITTTSFLRYQLLTTTLRSAPNVGECLFGLQK---RGSRVTAMATYKVKLITPSGVKEIKC 65

Query: 65  PDNEYILDAAENDGIDLPFSCRAGACSACVGKLKSGKVDQSDVSFLDEDQIAQGWVLTCL 124
           PD+ YIL+ AE++G+DLP+SCRAGACS+C GKL SGKVDQS+VSFLD+D IA+GWV+ C+
Sbjct: 66  PDDNYILNVAEDEGLDLPYSCRAGACSSCAGKLISGKVDQSNVSFLDDDHIAKGWVINCM 125

Query: 125 ATPLSDVVIETDKEEEFSS 144
           A PLSDVVIET KEEEF++
Sbjct: 126 AYPLSDVVIETHKEEEFTN 141

[Close]

BLAST of Lsi05G001640 vs. ExPASy TrEMBL
Match: A0A7J6EFD8 (Ferredoxin OS=Cannabis sativa OX=3483 GN=F8388_003325 PE=3 SV=1)

HSP 1 Score: 199.5 bits (506), Expect = 9.3e-48
Identity = 96/142 (67.61%), Postives = 118/142 (83.10%), Query Frame = 0


Query: 2   ASLITTTSFLWSQPPAATLRLVPNVGERLFGLQKGGSRGGRVTAMATYKVKLITPSGEKV 61
           ++ + +TSF+  QP A +LR VPNVG+ LFG  K  SRGGRVTAMA YKVKLITP G+  
Sbjct: 13  STTMMSTSFVRRQPTATSLRAVPNVGQSLFGGLK-ASRGGRVTAMAAYKVKLITPEGDSE 72

Query: 62  VECPDNEYILDAAENDGIDLPFSCRAGACSACVGKLKSGKVDQSDVSFLDEDQIAQGWVL 121
           +ECPD+ Y+LD AE+ GIDLP+SCRAGACS+C+GK+  GKVDQSD SFLD+DQ+A+GWVL
Sbjct: 73  IECPDDTYVLDQAEDAGIDLPYSCRAGACSSCIGKVVEGKVDQSDNSFLDDDQMAEGWVL 132

Query: 122 TCLATPLSDVVIETDKEEEFSS 144
           TC+A PLSDVVIET KEEEF++
Sbjct: 133 TCVAYPLSDVVIETHKEEEFAA 153

[Close]

BLAST of Lsi05G001640 vs. NCBI nr
Match: XP_022136605.1 (ferredoxin-2-like [Momordica charantia])

HSP 1 Score: 205.7 bits (522), Expect = 2.7e-49
Identity = 104/134 (77.61%), Postives = 115/134 (85.82%), Query Frame = 0


Query: 8   TSFLWSQPPAATLRLVPNVGERLFGLQKGGSRGGRVTAMATYKVKLITPSGEKVVECPDN 67
           TSFL +  P    R V NVGE LFGLQKG SR GRVTAMATYKVKLITPSGEKVV+C D+
Sbjct: 13  TSFLGTARP----RPVSNVGEGLFGLQKGCSRSGRVTAMATYKVKLITPSGEKVVDCLDS 72

Query: 68  EYILDAAENDGIDLPFSCRAGACSACVGKLKSGKVDQSDVSFLDEDQIAQGWVLTCLATP 127
           +YILDAAE  G++LP SCRAGACS+CVGKLKSGK+DQSDVSFLDEDQI +GWVLTCLA+P
Sbjct: 73  DYILDAAEAKGLELPHSCRAGACSSCVGKLKSGKLDQSDVSFLDEDQIEEGWVLTCLASP 132

Query: 128 LSDVVIETDKEEEF 142
           +SDVVIET K EEF
Sbjct: 133 MSDVVIETHKAEEF 142

[Close]

BLAST of Lsi05G001640 vs. NCBI nr
Match: XP_008456215.1 (PREDICTED: ferredoxin-like [Cucumis melo] >KAA0038965.1 ferredoxin-like [Cucumis melo var. makuwa])

HSP 1 Score: 202.6 bits (514), Expect = 2.3e-48
Identity = 100/139 (71.94%), Postives = 117/139 (84.17%), Query Frame = 0


Query: 5   ITTTSFLWSQPPAATLRLVPNVGERLFGLQKGGSRGGRVTAMATYKVKLITPSGEKVVEC 64
           ITTTSFL  Q    TLR  PNVGE LFGLQK   RG RVTAMATYKVKLITPSG K ++C
Sbjct: 6   ITTTSFLRYQLLTTTLRSAPNVGECLFGLQK---RGSRVTAMATYKVKLITPSGVKEIKC 65

Query: 65  PDNEYILDAAENDGIDLPFSCRAGACSACVGKLKSGKVDQSDVSFLDEDQIAQGWVLTCL 124
           PD+ YIL+ AE++G+DLP+SCRAGACS+C GKL SGKVDQS++SFLD+DQIA+GWV+ C+
Sbjct: 66  PDDNYILNVAEDEGLDLPYSCRAGACSSCAGKLISGKVDQSNISFLDDDQIAKGWVINCM 125

Query: 125 ATPLSDVVIETDKEEEFSS 144
           A PLSDVVIET KEEEF++
Sbjct: 126 AYPLSDVVIETHKEEEFTN 141

[Close]

BLAST of Lsi05G001640 vs. NCBI nr
Match: TYK11179.1 (ferredoxin-like [Cucumis melo var. makuwa])

HSP 1 Score: 201.1 bits (510), Expect = 6.6e-48
Identity = 100/139 (71.94%), Postives = 116/139 (83.45%), Query Frame = 0


Query: 5   ITTTSFLWSQPPAATLRLVPNVGERLFGLQKGGSRGGRVTAMATYKVKLITPSGEKVVEC 64
           ITTTSFL  Q    TLR  PNVGE LFGLQK   RG RVTAMATYKVKLITPSG K ++C
Sbjct: 6   ITTTSFLRYQLLTTTLRSAPNVGECLFGLQK---RGSRVTAMATYKVKLITPSGVKEIKC 65

Query: 65  PDNEYILDAAENDGIDLPFSCRAGACSACVGKLKSGKVDQSDVSFLDEDQIAQGWVLTCL 124
           PD+ YIL+ AE++G+DLP+SCRAGACS+C GKL SGKVDQS+VSFLD+D IA+GWV+ C+
Sbjct: 66  PDDNYILNVAEDEGLDLPYSCRAGACSSCAGKLISGKVDQSNVSFLDDDHIAKGWVINCM 125

Query: 125 ATPLSDVVIETDKEEEFSS 144
           A PLSDVVIET KEEEF++
Sbjct: 126 AYPLSDVVIETHKEEEFTN 141

[Close]

BLAST of Lsi05G001640 vs. NCBI nr
Match: KAF4357178.1 (hypothetical protein F8388_003325 [Cannabis sativa] >KAF4366359.1 hypothetical protein G4B88_026686 [Cannabis sativa])

HSP 1 Score: 199.5 bits (506), Expect = 1.9e-47
Identity = 96/142 (67.61%), Postives = 118/142 (83.10%), Query Frame = 0


Query: 2   ASLITTTSFLWSQPPAATLRLVPNVGERLFGLQKGGSRGGRVTAMATYKVKLITPSGEKV 61
           ++ + +TSF+  QP A +LR VPNVG+ LFG  K  SRGGRVTAMA YKVKLITP G+  
Sbjct: 13  STTMMSTSFVRRQPTATSLRAVPNVGQSLFGGLK-ASRGGRVTAMAAYKVKLITPEGDSE 72

Query: 62  VECPDNEYILDAAENDGIDLPFSCRAGACSACVGKLKSGKVDQSDVSFLDEDQIAQGWVL 121
           +ECPD+ Y+LD AE+ GIDLP+SCRAGACS+C+GK+  GKVDQSD SFLD+DQ+A+GWVL
Sbjct: 73  IECPDDTYVLDQAEDAGIDLPYSCRAGACSSCIGKVVEGKVDQSDNSFLDDDQMAEGWVL 132

Query: 122 TCLATPLSDVVIETDKEEEFSS 144
           TC+A PLSDVVIET KEEEF++
Sbjct: 133 TCVAYPLSDVVIETHKEEEFAA 153

[Close]

BLAST of Lsi05G001640 vs. NCBI nr
Match: KAF4352271.1 (hypothetical protein G4B88_029227 [Cannabis sativa])

HSP 1 Score: 199.5 bits (506), Expect = 1.9e-47
Identity = 96/142 (67.61%), Postives = 118/142 (83.10%), Query Frame = 0


Query: 2   ASLITTTSFLWSQPPAATLRLVPNVGERLFGLQKGGSRGGRVTAMATYKVKLITPSGEKV 61
           ++ + +TSF+  QP A +LR VPNVG+ LFG  K  SRGGRVTAMA YKVKLITP G+  
Sbjct: 790 STTMMSTSFVRRQPTATSLRAVPNVGQSLFGGLK-ASRGGRVTAMAAYKVKLITPEGDSE 849

Query: 62  VECPDNEYILDAAENDGIDLPFSCRAGACSACVGKLKSGKVDQSDVSFLDEDQIAQGWVL 121
           +ECPD+ Y+LD AE+ GIDLP+SCRAGACS+C+GK+  GKVDQSD SFLD+DQ+A+GWVL
Sbjct: 850 IECPDDTYVLDQAEDAGIDLPYSCRAGACSSCIGKVVEGKVDQSDNSFLDDDQMAEGWVL 909

Query: 122 TCLATPLSDVVIETDKEEEFSS 144
           TC+A PLSDVVIET KEEEF++
Sbjct: 910 TCVAYPLSDVVIETHKEEEFAA 930

[Close]

BLAST of Lsi05G001640 vs. TAIR 10
Match: AT1G60950.1 (2Fe-2S ferredoxin-like superfamily protein )

HSP 1 Score: 175.6 bits (444), Expect = 2.8e-44
Identity = 87/141 (61.70%), Postives = 107/141 (75.89%), Query Frame = 0


Query: 1   MASLITTTSFLWSQPPAATLRLVPNVG-ERLFGLQKGGSRGGRVTAMATYKVKLITPSGE 60
           ++S I  TSF+   P   +LR +P+   + LFGL+ G +RGGRVTAMATYKVK ITP GE
Sbjct: 6   LSSAIVGTSFIRRSPAPISLRSLPSANTQSLFGLKSGTARGGRVTAMATYKVKFITPEGE 65

Query: 61  KVVECPDNEYILDAAENDGIDLPFSCRAGACSACVGKLKSGKVDQSDVSFLDEDQIAQGW 120
             VEC D+ Y+LDAAE  GIDLP+SCRAG+CS+C GK+ SG VDQSD SFLD++QI +G+
Sbjct: 66  LEVECDDDVYVLDAAEEAGIDLPYSCRAGSCSSCAGKVVSGSVDQSDQSFLDDEQIGEGF 125

Query: 121 VLTCLATPLSDVVIETDKEEE 141
           VLTC A P SDV IET KEE+
Sbjct: 126 VLTCAAYPTSDVTIETHKEED 146

[Close]

BLAST of Lsi05G001640 vs. TAIR 10
Match: AT1G10960.1 (ferredoxin 1 )

HSP 1 Score: 172.6 bits (436), Expect = 2.4e-43
Identity = 84/140 (60.00%), Postives = 109/140 (77.86%), Query Frame = 0


Query: 1   MASLITTTSFLWSQPPAATLRLVPNVG-ERLFGLQKGGSRGGRVTAMATYKVKLITPSGE 60
           ++S I +TSFL  Q    +LR +P    + LFGL+   +RGGRVTAMATYKVK ITP GE
Sbjct: 6   LSSAIVSTSFLRRQQTPISLRSLPFANTQSLFGLKSSTARGGRVTAMATYKVKFITPEGE 65

Query: 61  KVVECPDNEYILDAAENDGIDLPFSCRAGACSACVGKLKSGKVDQSDVSFLDEDQIAQGW 120
           + VEC ++ Y+LDAAE  G+DLP+SCRAG+CS+C GK+ SG +DQSD SFLD++Q+++G+
Sbjct: 66  QEVECEEDVYVLDAAEEAGLDLPYSCRAGSCSSCAGKVVSGSIDQSDQSFLDDEQMSEGY 125

Query: 121 VLTCLATPLSDVVIETDKEE 140
           VLTC+A P SDVVIET KEE
Sbjct: 126 VLTCVAYPTSDVVIETHKEE 145

[Close]

BLAST of Lsi05G001640 vs. TAIR 10
Match: AT2G27510.1 (ferredoxin 3 )

HSP 1 Score: 125.2 bits (313), Expect = 4.3e-29
Identity = 64/113 (56.64%), Postives = 79/113 (69.91%), Query Frame = 0


Query: 29  RLFGLQKGGSRGGRVTAMATYKVKLITPSG-EKVVECPDNEYILDAAENDGIDLPFSCRA 88
           R FGL+   + GG  T  A YKVKL+ P G E   E  D++YILDAAE  G+DLP+SCRA
Sbjct: 42  RSFGLKCSANSGG-ATMSAVYKVKLLGPDGQEDEFEVQDDQYILDAAEEAGVDLPYSCRA 101

Query: 89  GACSACVGKLKSGKVDQSDVSFLDEDQIAQGWVLTCLATPLSDVVIETDKEEE 141
           GACS C G++ SG VDQSD SFL++  + +G+VLTC+A P SD VI T KE E
Sbjct: 102 GACSTCAGQIVSGNVDQSDGSFLEDSHLEKGYVLTCVAYPQSDCVIHTHKETE 153

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BLAST of Lsi05G001640 vs. TAIR 10
Match: AT5G10000.1 (ferredoxin 4 )

HSP 1 Score: 113.6 bits (283), Expect = 1.3e-25
Identity = 56/111 (50.45%), Postives = 78/111 (70.27%), Query Frame = 0


Query: 31  FGLQKGGSRGGRVTAMATYKVKLITPSG-EKVVECPDNEYILDAAENDGIDLPFSCRAGA 90
           FGL       G+V A  + KVKLI+P G E+ +E  ++  IL++AEN G++LP+SCR+G 
Sbjct: 36  FGLSSSRGNFGKVFAKESRKVKLISPEGEEQEIEGNEDCCILESAENAGLELPYSCRSGT 95

Query: 91  CSACVGKLKSGKVDQSDVSFLDEDQIAQGWVLTCLATPLSDVVIETDKEEE 141
           C  C GKL SGKVDQS  SFL+E+QI +G++LTC+A PL D V+ T K+ +
Sbjct: 96  CGTCCGKLVSGKVDQSLGSFLEEEQIQKGYILTCIALPLEDCVVYTHKQSD 146

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BLAST of Lsi05G001640 vs. TAIR 10
Match: AT1G32550.1 (2Fe-2S ferredoxin-like superfamily protein )

HSP 1 Score: 73.9 bits (180), Expect = 1.1e-13
Identity = 31/78 (39.74%), Postives = 51/78 (65.38%), Query Frame = 0


Query: 63  ECPDNEYILDAAENDGIDLPFSCRAGACSACVGKLKSGKVDQSDVSFLDEDQIAQGWVLT 122
           E P+++YIL +AE+  I LPF+CR G C++C  ++KSG++ Q     +  +  +QG+ L 
Sbjct: 75  EVPEDQYILHSAESQNISLPFACRHGCCTSCAVRVKSGELRQPQALGISAELKSQGYALL 134

Query: 123 CLATPLSDVVIETDKEEE 141
           C+  P SD+ +ET  E+E
Sbjct: 135 CVGFPTSDLEVETQDEDE 152

The following BLAST results are available for this feature:

BLAST of Lsi05G001640 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P16972	3.9e-43	61.70	Ferredoxin-2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=FD2 PE=1 SV=1	[more]
O04090	3.3e-42	60.00	Ferredoxin-1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=FD1 PE=1 SV=1	[more]
O04683	2.8e-41	61.31	Ferredoxin-1, chloroplastic OS=Mesembryanthemum crystallinum OX=3544 PE=2 SV=1	[more]
Q43517	2.8e-41	58.04	Ferredoxin-1, chloroplastic OS=Solanum lycopersicum OX=4081 GN=SEND33 PE=2 SV=1	[more]
Q9ZTS2	3.7e-41	57.14	Ferredoxin, chloroplastic OS=Capsicum annuum OX=4072 GN=AP1 PE=1 SV=1	[more]

BLAST of Lsi05G001640 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1C4E2	1.3e-49	77.61	Ferredoxin OS=Momordica charantia OX=3673 GN=LOC111008271 PE=3 SV=1	[more]
A0A5A7TC46	1.1e-48	71.94	Ferredoxin OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold84G00430 PE=3...	[more]
A0A1S3C2Q0	1.1e-48	71.94	Ferredoxin OS=Cucumis melo OX=3656 GN=LOC103496218 PE=3 SV=1	[more]
A0A5D3CLT7	3.2e-48	71.94	Ferredoxin OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold227G00150 PE=...	[more]
A0A7J6EFD8	9.3e-48	67.61	Ferredoxin OS=Cannabis sativa OX=3483 GN=F8388_003325 PE=3 SV=1	[more]

BLAST of Lsi05G001640 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022136605.1	2.7e-49	77.61	ferredoxin-2-like [Momordica charantia]	[more]
XP_008456215.1	2.3e-48	71.94	PREDICTED: ferredoxin-like [Cucumis melo] >KAA0038965.1 ferredoxin-like [Cucumis...	[more]
TYK11179.1	6.6e-48	71.94	ferredoxin-like [Cucumis melo var. makuwa]	[more]
KAF4357178.1	1.9e-47	67.61	hypothetical protein F8388_003325 [Cannabis sativa] >KAF4366359.1 hypothetical p...	[more]
KAF4352271.1	1.9e-47	67.61	hypothetical protein G4B88_029227 [Cannabis sativa]	[more]

BLAST of Lsi05G001640 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G60950.1	2.8e-44	61.70	2Fe-2S ferredoxin-like superfamily protein	[more]
AT1G10960.1	2.4e-43	60.00	ferredoxin 1	[more]
AT2G27510.1	4.3e-29	56.64	ferredoxin 3	[more]
AT5G10000.1	1.3e-25	50.45	ferredoxin 4	[more]
AT1G32550.1	1.1e-13	39.74	2Fe-2S ferredoxin-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012675	Beta-grasp domain superfamily	GENE3D	3.10.20.30		coord: 46..143 e-value: 4.5E-36 score: 124.6
IPR010241	Ferredoxin [2Fe-2S], plant	TIGRFAM	TIGR02008	TIGR02008	coord: 47..141 e-value: 2.3E-44 score: 147.1
IPR001041	2Fe-2S ferredoxin-type iron-sulfur binding domain	PFAM	PF00111	Fer2	coord: 56..127 e-value: 1.6E-18 score: 66.4
IPR001041	2Fe-2S ferredoxin-type iron-sulfur binding domain	PROSITE	PS51085	2FE2S_FER_2	coord: 49..139 score: 12.931115
IPR001041	2Fe-2S ferredoxin-type iron-sulfur binding domain	CDD	cd00207	fer2	coord: 51..134 e-value: 5.49885E-32 score: 107.096
None	No IPR available	PANTHER	PTHR43112	FERREDOXIN	coord: 2..140
None	No IPR available	PANTHER	PTHR43112:SF17	FERREDOXIN-1, CHLOROPLASTIC	coord: 2..140
IPR006058	2Fe-2S ferredoxin, iron-sulphur binding site	PROSITE	PS00197	2FE2S_FER_1	coord: 85..93
IPR036010	2Fe-2S ferredoxin-like superfamily	SUPERFAMILY	54292	2Fe-2S ferredoxin-like	coord: 29..138

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi05G001640.1	Lsi05G001640.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0022900	electron transport chain
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0010008	endosome membrane
cellular_component	GO:0000139	Golgi membrane
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0051537	2 iron, 2 sulfur cluster binding
molecular_function	GO:0009055	electron transfer activity
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0051536	iron-sulfur cluster binding