Lsi05G001560 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi05G001560
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
DescriptionUnknown protein
Locationchr05: 2282399 .. 2282794 (+)
RNA-Seq ExpressionLsi05G001560
SyntenyLsi05G001560
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTACCAAGACTGGAAGATATCAGCAGCGTCTTGCACGAAGGGGCAATCATTTTCGTTCACCAATTTGGCAAAAATCACCCAGGCACAACACATTTGAAGCCAAACCAGACACCTAACTGCGAACTGGACCTGTTACTGGGTCACGACTTGAACCAGAATCCTTTTGCTTCAAAGAAAGGTTAGCAAATTGATTGTCAAGGTCTTTGCTCGAAGTACGCCGATGACTAGAAGAAGGTCGTAGTTGTTGTGGTTGTTGCTGCTGATGATGTTGCTGCTGGTGCACAGTTCTTAACCTTCCAATCTCCCTCTCCAGTACTTCCTGCTCCACTGGATAGAGTTTCATCTCTTAGCTTTCTTGTACAAATAAATGGGGGAATATCGTACAGTTCATAG

mRNA sequence

ATGGTACCAAGACTGGAAGATATCAGCAGCGTCTTGCACGAAGGGGCAATCATTTTCGTTCACCAATTTGGCAAAAATCACCCAGGCACAACACATTTGAAGCCAAACCAGACACCTAACTGCGAACTGGACCTGTTACTGGGTCACGACTTGAACCAGAATCCTTTTGCTTCAAAGAAAGTACTTCCTGCTCCACTGGATAGAGTTTCATCTCTTAGCTTTCTTGTACAAATAAATGGGGGAATATCGTACAGTTCATAG

Coding sequence (CDS)

ATGGTACCAAGACTGGAAGATATCAGCAGCGTCTTGCACGAAGGGGCAATCATTTTCGTTCACCAATTTGGCAAAAATCACCCAGGCACAACACATTTGAAGCCAAACCAGACACCTAACTGCGAACTGGACCTGTTACTGGGTCACGACTTGAACCAGAATCCTTTTGCTTCAAAGAAAGTACTTCCTGCTCCACTGGATAGAGTTTCATCTCTTAGCTTTCTTGTACAAATAAATGGGGGAATATCGTACAGTTCATAG

Protein sequence

MVPRLEDISSVLHEGAIIFVHQFGKNHPGTTHLKPNQTPNCELDLLLGHDLNQNPFASKKVLPAPLDRVSSLSFLVQINGGISYSS
Homology
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BLAST of Lsi05G001560 vs. NCBI nr
Match: KAG6576991.1 (hypothetical protein SDJN03_24565, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 102.8 bits (255), Expect = 1.5e-18
Identity = 48/61 (78.69%), Postives = 52/61 (85.25%), Query Frame = 0 

Query: 2  VPRLEDI--SSVLHEGAIIFVHQFGKNHPGTTHLKPNQTPNCELDLLLGHDLNQNPFASK 61
          VP LE+I  SSVLH G I+FVHQFGKN+PGTT LKPNQ PNC LDLL GHDLNQNPF+SK
Sbjct: 28 VPTLEEISSSSVLHNGTIVFVHQFGKNYPGTTLLKPNQKPNCALDLLPGHDLNQNPFSSK 87

The following BLAST results are available for this feature:
BLAST of Lsi05G001560 vs.
Match NameE-valueIdentityDescription
BLAST of Lsi05G001560 vs.
Match NameE-valueIdentityDescription
BLAST of Lsi05G001560 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6576991.11.5e-1878.69hypothetical protein SDJN03_24565, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of Lsi05G001560 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi05G001560.1Lsi05G001560.1mRNA