Lsi05G001290 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi05G001290
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	protein SAWADEE HOMEODOMAIN HOMOLOG 2 isoform X1
Location	chr05: 1940272 .. 1941990 (+)
RNA-Seq Expression	Lsi05G001290
Synteny	Lsi05G001290

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTTCTTCCTCCAGTCCTTTTCTCCCTCCCTACCTTTGAGTTTGTATTGACGTATTTCCTACCTTTGAGTTTGTATTGACGTATTTAGGGTTAAGCAACAACTTATCTGACCAATATTTTGGTGATTCCCTAAAATGGTCCAAGATCTATATTTGATTGTAATTCCAAAGTTTGTCTCCTGATTTTTTTGTTGAGTACAACAAAAGTAGTGGTGAGAATGTGATTCTTTGGATCTCAAAGGAAGGAATAGCTGCATTTATCGTTGATGTTCATGATTTTTTATAAAGAAATTTGATGTTTTGATTTGTTCGCTTGAATCTGGCTCCTTATATTACCTAATAATTGTTGTTTGTCAGGAAGCCTAATAGTAGTTGTTTCTCAGGAAGTACTAGTTAGATTTTCTGGTTTTGGATCCGAGGAGGATGAGTGGGTTAATATCCGAAGAAACATTAGACCTCGTTCTCTACCTTGTGAATCATCAGAATGTGTGGCAGTTCTTCCAGGCGATCTCATCTTATGCTTTCAGGTAAAATCCTTTTTTACACTTCTCCAGACTTCCAATACTTAACGGGAGGCCTTTCCATCACCTTCTTGCAATGAATTCAGGATAATCTCTTTTACTAGGTTTATCTATATTGGACATAATCTCCGACTACCTTGTAAAACCACTCCCCTAGGTGGAGTACACAATGATCTTTTAACATTCTCACTAAAAAACTCAACACTCACTCTACCCTATAGGGAAACCTTTTTTTATGAGAAATTTCATTATCTTCAAAATTTTCAGGAGGGTAAAGAGCAGGCACTTTACTTTGATGCCCACGTGCTTGATACACAGCGAAGAAGACATGATGTACGGGGTTGTCGCTGCAGGTTTTTGGTTCGTTATGATCACGATCAATCTGAGGTGTATATCTTCTTCAGGTTCTTTTGGTTGTTTCTATTCAATATTGCTCTCCTAGCTCCAACATCAGCTTGGGGGTGGTTGCAATGAACACAAACATCACATCAATATAACAATTATTTTGTGGTTCACTAGAAACGAAGCTCTTTTTCTGTGTAATCTTGTTTGTGTTAATTCCACATGGGCTGAAGAAGCTTTCGATCTGGGTAAAATTGGAAATTAAGAGCCTGGTTAGTGGTTGCTGATGTCAGTTCTCTTTTCTTTTTTCTTTCTTTCTTCTTCTTCTTCTAAAAAGAGTTTATTTTGGTAAAAAGCAAGTACTGTGTTATTTAATCAGGCATTGACTGCTGTTCCGGATTATTGATTTCTCTTGCTTTAAATTATTGGTAGGAAATTGTTCAGTTGAGAAAGATTTGCCGTCGGCCTGAGACTGATTACCGGTTGCAACAGCTTCACGCGGTAAATGAAGCAGCATCCATTGAGCCCTCAAAGTCTAGCATGGATTCTGTATTGCTTAGTGGCCAGAGGATAAATTTCGAGACAACACAAAAGCCGCTTAGCAAGGATGGAGCCTTGGTTATACCAAATGCAAATGCCAATATGAATGTCCAAGCCCAAACTAGTACTCAGGAAGCAAGCAATACTGAAACTAACAGTGCTCCAACCACATTCCACTCTGGTAATCACAGTGCTCCAAATACATTCAACACTGGTAATCCAGCAGGTAGCTCTGCCTTCTCGAGTGGTATCATGATGAACACTGTTTCTAGTGGGTCGGCTGACAATGTGTCTGATGGGAAGTTACTTAGTTGA

mRNA sequence

ATGTTTCTTCCTCCAGTCCTTTTCTCCCTCCCTACCTTTGAGTTTGTATTGACGTATTTCCTACCTTTGAGAAGCCTAATAGTAGTTGTTTCTCAGGAAGTACTAGTTAGATTTTCTGGTTTTGGATCCGAGGAGGATGAGTGGGTTAATATCCGAAGAAACATTAGACCTCGTTCTCTACCTTGTGAATCATCAGAATGTGTGGCAGTTCTTCCAGGCGATCTCATCTTATGCTTTCAGGAGGGTAAAGAGCAGGCACTTTACTTTGATGCCCACGTGCTTGATACACAGCGAAGAAGACATGATGTACGGGGTTGTCGCTGCAGGTTTTTGGTTCGTTATGATCACGATCAATCTGAGGAAATTGTTCAGTTGAGAAAGATTTGCCGTCGGCCTGAGACTGATTACCGGTTGCAACAGCTTCACGCGGTAAATGAAGCAGCATCCATTGAGCCCTCAAAGTCTAGCATGGATTCTGTATTGCTTAGTGGCCAGAGGATAAATTTCGAGACAACACAAAAGCCGCTTAGCAAGGATGGAGCCTTGGTTATACCAAATGCAAATGCCAATATGAATGTCCAAGCCCAAACTAGTACTCAGGAAGCAAGCAATACTGAAACTAACAGTGCTCCAACCACATTCCACTCTGGTAATCACAGTGCTCCAAATACATTCAACACTGGTAATCCAGCAGGTAGCTCTGCCTTCTCGAGTGGTATCATGATGAACACTGTTTCTAGTGGGTCGGCTGACAATGTGTCTGATGGGAAGTTACTTAGTTGA

Coding sequence (CDS)

ATGTTTCTTCCTCCAGTCCTTTTCTCCCTCCCTACCTTTGAGTTTGTATTGACGTATTTCCTACCTTTGAGAAGCCTAATAGTAGTTGTTTCTCAGGAAGTACTAGTTAGATTTTCTGGTTTTGGATCCGAGGAGGATGAGTGGGTTAATATCCGAAGAAACATTAGACCTCGTTCTCTACCTTGTGAATCATCAGAATGTGTGGCAGTTCTTCCAGGCGATCTCATCTTATGCTTTCAGGAGGGTAAAGAGCAGGCACTTTACTTTGATGCCCACGTGCTTGATACACAGCGAAGAAGACATGATGTACGGGGTTGTCGCTGCAGGTTTTTGGTTCGTTATGATCACGATCAATCTGAGGAAATTGTTCAGTTGAGAAAGATTTGCCGTCGGCCTGAGACTGATTACCGGTTGCAACAGCTTCACGCGGTAAATGAAGCAGCATCCATTGAGCCCTCAAAGTCTAGCATGGATTCTGTATTGCTTAGTGGCCAGAGGATAAATTTCGAGACAACACAAAAGCCGCTTAGCAAGGATGGAGCCTTGGTTATACCAAATGCAAATGCCAATATGAATGTCCAAGCCCAAACTAGTACTCAGGAAGCAAGCAATACTGAAACTAACAGTGCTCCAACCACATTCCACTCTGGTAATCACAGTGCTCCAAATACATTCAACACTGGTAATCCAGCAGGTAGCTCTGCCTTCTCGAGTGGTATCATGATGAACACTGTTTCTAGTGGGTCGGCTGACAATGTGTCTGATGGGAAGTTACTTAGTTGA

Protein sequence

MFLPPVLFSLPTFEFVLTYFLPLRSLIVVVSQEVLVRFSGFGSEEDEWVNIRRNIRPRSLPCESSECVAVLPGDLILCFQEGKEQALYFDAHVLDTQRRRHDVRGCRCRFLVRYDHDQSEEIVQLRKICRRPETDYRLQQLHAVNEAASIEPSKSSMDSVLLSGQRINFETTQKPLSKDGALVIPNANANMNVQAQTSTQEASNTETNSAPTTFHSGNHSAPNTFNTGNPAGSSAFSSGIMMNTVSSGSADNVSDGKLLS

Homology

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BLAST of Lsi05G001290 vs. ExPASy Swiss-Prot
Match: Q8RWJ7 (Protein SAWADEE HOMEODOMAIN HOMOLOG 2 OS=Arabidopsis thaliana OX=3702 GN=SHH2 PE=2 SV=1)

HSP 1 Score: 199.9 bits (507), Expect = 3.5e-50
Identity = 113/194 (58.25%), Postives = 138/194 (71.13%), Query Frame = 0


Query: 20  FLPLRSLIVVVSQEVLVRFSGFGSEEDEWVNIRRNIRPRSLPCESSECVAVLPGDLILCF 79
           FL  R+L  +   EV VRF+GF  EEDEW+N+++++R RSLPCE+SECVAVL GDL+LCF
Sbjct: 161 FLAHRNL-EIGDPEVQVRFAGFEVEEDEWINVKKHVRQRSLPCEASECVAVLAGDLVLCF 220

Query: 80  QEGKEQALYFDAHVLDTQRRRHDVRGCRCRFLVRYDHDQSEEIVQLRKICRRPETDYRLQ 139
           QEGK+QALYFDA VLD QRRRHDVRGCRCRFLVRY HDQSEEIV LRKICRRPETDYRLQ
Sbjct: 221 QEGKDQALYFDAIVLDAQRRRHDVRGCRCRFLVRYSHDQSEEIVPLRKICRRPETDYRLQ 280

Query: 140 QLH-AVNEAA-SIEPSKSSMDSVLLSGQRINFETTQKPLSKDGA---LVIPNA-NANMNV 199
           QLH AVN+ A S +    ++D+             + PLS  GA   +V P + + +++ 
Sbjct: 281 QLHNAVNDLANSNQHQIPALDA-----------AAKTPLSLPGATVPIVAPESKDPSLSA 340

Query: 200 QAQTSTQEASNTET 208
              T  Q +SN  T
Sbjct: 341 TPATLVQPSSNAAT 342

[Close]

BLAST of Lsi05G001290 vs. ExPASy Swiss-Prot
Match: Q9XI47 (Protein SAWADEE HOMEODOMAIN HOMOLOG 1 OS=Arabidopsis thaliana OX=3702 GN=SHH1 PE=1 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 1.4e-27
Identity = 58/101 (57.43%), Postives = 73/101 (72.28%), Query Frame = 0


Query: 33  EVLVRFSGFGSEEDEWVNIRRNIRPRSLPCESSECVAVLPGDLILCFQEGKEQALYFDAH 92
           EV VRFSGF +  DEWVN++ ++R RS+P E SEC  V  GDL+LCFQE ++QALY D H
Sbjct: 157 EVRVRFSGFDNRHDEWVNVKTSVRERSIPVEPSECGRVNVGDLLLCFQEREDQALYCDGH 216

Query: 93  VLDTQRRRHDVRGCRCRFLVRYDHDQSEEIVQLRKICRRPE 134
           VL+ +R  HD   C C FLVRY+ D +EE + L +ICRRPE
Sbjct: 217 VLNIKRGIHDHARCNCVFLVRYELDNTEESLGLERICRRPE 257

[Close]

BLAST of Lsi05G001290 vs. ExPASy TrEMBL
Match: A0A5A7UUV7 (SAWADEE HOMEODOMAIN-like protein 2 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold803G00380 PE=4 SV=1)

HSP 1 Score: 403.7 bits (1036), Expect = 5.9e-109
Identity = 207/228 (90.79%), Postives = 213/228 (93.42%), Query Frame = 0


Query: 33  EVLVRFSGFGSEEDEWVNIRRNIRPRSLPCESSECVAVLPGDLILCFQEGKEQALYFDAH 92
           EVLVRFSGFGSEEDEWVNIRRNIRPRSLPCESSECVAVLPGDLILCFQEGKEQALYFDAH
Sbjct: 155 EVLVRFSGFGSEEDEWVNIRRNIRPRSLPCESSECVAVLPGDLILCFQEGKEQALYFDAH 214

Query: 93  VLDTQRRRHDVRGCRCRFLVRYDHDQSEEIVQLRKICRRPETDYRLQQLHAVNEAASIEP 152
           VLDTQRRRHDVRGCRCRFLVRYDHDQSEEIVQLRKICRRPETDYRLQQLHAVNEAASIEP
Sbjct: 215 VLDTQRRRHDVRGCRCRFLVRYDHDQSEEIVQLRKICRRPETDYRLQQLHAVNEAASIEP 274

Query: 153 SKSSMDSVLLSGQRINFETTQKPLSKDGALVIPNANANMNVQAQTSTQEASNTETNSAPT 212
           SKS MDSVLLSGQRINFET Q PLSKD ALVIPNAN ++N  AQTSTQEA NTETN+AP 
Sbjct: 275 SKSGMDSVLLSGQRINFETPQNPLSKDAALVIPNANPHINAHAQTSTQEARNTETNTAPI 334

Query: 213 TFHSGNHSAPNTFNTGNPAGSSAFSSGIMMNTVSSGSADNVSDGKLLS 261
           TF SGNH+AP TFN+ N AGSSAFSSGI+ NTVS GSADNVSDGKLLS
Sbjct: 335 TFSSGNHNAPTTFNSANLAGSSAFSSGIVTNTVSGGSADNVSDGKLLS 382

[Close]

BLAST of Lsi05G001290 vs. ExPASy TrEMBL
Match: A0A1S3C274 (protein SAWADEE HOMEODOMAIN HOMOLOG 2 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103496064 PE=4 SV=1)

HSP 1 Score: 403.7 bits (1036), Expect = 5.9e-109
Identity = 207/228 (90.79%), Postives = 213/228 (93.42%), Query Frame = 0


Query: 33  EVLVRFSGFGSEEDEWVNIRRNIRPRSLPCESSECVAVLPGDLILCFQEGKEQALYFDAH 92
           EVLVRFSGFGSEEDEWVNIRRNIRPRSLPCESSECVAVLPGDLILCFQEGKEQALYFDAH
Sbjct: 155 EVLVRFSGFGSEEDEWVNIRRNIRPRSLPCESSECVAVLPGDLILCFQEGKEQALYFDAH 214

Query: 93  VLDTQRRRHDVRGCRCRFLVRYDHDQSEEIVQLRKICRRPETDYRLQQLHAVNEAASIEP 152
           VLDTQRRRHDVRGCRCRFLVRYDHDQSEEIVQLRKICRRPETDYRLQQLHAVNEAASIEP
Sbjct: 215 VLDTQRRRHDVRGCRCRFLVRYDHDQSEEIVQLRKICRRPETDYRLQQLHAVNEAASIEP 274

Query: 153 SKSSMDSVLLSGQRINFETTQKPLSKDGALVIPNANANMNVQAQTSTQEASNTETNSAPT 212
           SKS MDSVLLSGQRINFET Q PLSKD ALVIPNAN ++N  AQTSTQEA NTETN+AP 
Sbjct: 275 SKSGMDSVLLSGQRINFETPQNPLSKDAALVIPNANPHINAHAQTSTQEARNTETNTAPI 334

Query: 213 TFHSGNHSAPNTFNTGNPAGSSAFSSGIMMNTVSSGSADNVSDGKLLS 261
           TF SGNH+AP TFN+ N AGSSAFSSGI+ NTVS GSADNVSDGKLLS
Sbjct: 335 TFSSGNHNAPTTFNSANLAGSSAFSSGIVTNTVSGGSADNVSDGKLLS 382

[Close]

BLAST of Lsi05G001290 vs. ExPASy TrEMBL
Match: A0A1S3C2X6 (protein SAWADEE HOMEODOMAIN HOMOLOG 2 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103496064 PE=4 SV=1)

HSP 1 Score: 403.7 bits (1036), Expect = 5.9e-109
Identity = 207/228 (90.79%), Postives = 213/228 (93.42%), Query Frame = 0


Query: 33  EVLVRFSGFGSEEDEWVNIRRNIRPRSLPCESSECVAVLPGDLILCFQEGKEQALYFDAH 92
           EVLVRFSGFGSEEDEWVNIRRNIRPRSLPCESSECVAVLPGDLILCFQEGKEQALYFDAH
Sbjct: 134 EVLVRFSGFGSEEDEWVNIRRNIRPRSLPCESSECVAVLPGDLILCFQEGKEQALYFDAH 193

Query: 93  VLDTQRRRHDVRGCRCRFLVRYDHDQSEEIVQLRKICRRPETDYRLQQLHAVNEAASIEP 152
           VLDTQRRRHDVRGCRCRFLVRYDHDQSEEIVQLRKICRRPETDYRLQQLHAVNEAASIEP
Sbjct: 194 VLDTQRRRHDVRGCRCRFLVRYDHDQSEEIVQLRKICRRPETDYRLQQLHAVNEAASIEP 253

Query: 153 SKSSMDSVLLSGQRINFETTQKPLSKDGALVIPNANANMNVQAQTSTQEASNTETNSAPT 212
           SKS MDSVLLSGQRINFET Q PLSKD ALVIPNAN ++N  AQTSTQEA NTETN+AP 
Sbjct: 254 SKSGMDSVLLSGQRINFETPQNPLSKDAALVIPNANPHINAHAQTSTQEARNTETNTAPI 313

Query: 213 TFHSGNHSAPNTFNTGNPAGSSAFSSGIMMNTVSSGSADNVSDGKLLS 261
           TF SGNH+AP TFN+ N AGSSAFSSGI+ NTVS GSADNVSDGKLLS
Sbjct: 314 TFSSGNHNAPTTFNSANLAGSSAFSSGIVTNTVSGGSADNVSDGKLLS 361

[Close]

BLAST of Lsi05G001290 vs. ExPASy TrEMBL
Match: A0A5D3CH38 (Protein SAWADEE HOMEODOMAIN-like protein 2 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold227G001130 PE=4 SV=1)

HSP 1 Score: 401.0 bits (1029), Expect = 3.8e-108
Identity = 206/228 (90.35%), Postives = 212/228 (92.98%), Query Frame = 0


Query: 33  EVLVRFSGFGSEEDEWVNIRRNIRPRSLPCESSECVAVLPGDLILCFQEGKEQALYFDAH 92
           EVLVRFSGFGSEEDEWVNIRRNIRPRSLPCESSECVAVLPGDLILCFQEGKEQALYFDAH
Sbjct: 155 EVLVRFSGFGSEEDEWVNIRRNIRPRSLPCESSECVAVLPGDLILCFQEGKEQALYFDAH 214

Query: 93  VLDTQRRRHDVRGCRCRFLVRYDHDQSEEIVQLRKICRRPETDYRLQQLHAVNEAASIEP 152
           VLDTQRRRHDVRGCRCRFLVRYDH+QSEEIVQLRKICRRPETDYRLQQLHAVNEAASIEP
Sbjct: 215 VLDTQRRRHDVRGCRCRFLVRYDHNQSEEIVQLRKICRRPETDYRLQQLHAVNEAASIEP 274

Query: 153 SKSSMDSVLLSGQRINFETTQKPLSKDGALVIPNANANMNVQAQTSTQEASNTETNSAPT 212
           SKS MDSVLLSGQRINFET Q PLSKD ALVIPNAN + N  AQTSTQEA NTETN+AP 
Sbjct: 275 SKSGMDSVLLSGQRINFETPQNPLSKDAALVIPNANPHTNAHAQTSTQEARNTETNTAPI 334

Query: 213 TFHSGNHSAPNTFNTGNPAGSSAFSSGIMMNTVSSGSADNVSDGKLLS 261
           TF SGNH+AP TFN+ N AGSSAFSSGI+ NTVS GSADNVSDGKLLS
Sbjct: 335 TFSSGNHNAPTTFNSANLAGSSAFSSGIVTNTVSGGSADNVSDGKLLS 382

[Close]

BLAST of Lsi05G001290 vs. ExPASy TrEMBL
Match: A0A0A0LC67 (SAWADEE domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G236580 PE=4 SV=1)

HSP 1 Score: 383.6 bits (984), Expect = 6.4e-103
Identity = 200/228 (87.72%), Postives = 207/228 (90.79%), Query Frame = 0


Query: 33  EVLVRFSGFGSEEDEWVNIRRNIRPRSLPCESSECVAVLPGDLILCFQEGKEQALYFDAH 92
           EVLVRFSGFGSEEDEWVNIRRNIRPRSLPCESSECVAVLPGDLILCFQEGKEQALYFDAH
Sbjct: 149 EVLVRFSGFGSEEDEWVNIRRNIRPRSLPCESSECVAVLPGDLILCFQEGKEQALYFDAH 208

Query: 93  VLDTQRRRHDVRGCRCRFLVRYDHDQSEEIVQLRKICRRPETDYRLQQLHAVNEAASIEP 152
           VLDTQRRRHDVRGCRCRFLVRYDHDQSEEIVQLRKICRRPETDYRLQQLHAVNEAASIEP
Sbjct: 209 VLDTQRRRHDVRGCRCRFLVRYDHDQSEEIVQLRKICRRPETDYRLQQLHAVNEAASIEP 268

Query: 153 SKSSMDSVLLSGQRINFETTQKPLSKDGALVIPNANANMNVQAQTSTQEASNTETNSAPT 212
           SKS MDSVLLSGQRINFET+Q PLSKD ALVIPNAN ++N  AQTSTQEA NTETN+APT
Sbjct: 269 SKSGMDSVLLSGQRINFETSQNPLSKDAALVIPNANPHINAHAQTSTQEARNTETNTAPT 328

Query: 213 TFHSGNHSAPNTFNTGNPAGSSAFSSGIMMNTVSSGSADNVSDGKLLS 261
                      TFN+ N AGSSAFSSGI+ NTVS+GSADNVSDGKLLS
Sbjct: 329 -----------TFNSANLAGSSAFSSGIVTNTVSAGSADNVSDGKLLS 365

[Close]

BLAST of Lsi05G001290 vs. NCBI nr
Match: XP_038878067.1 (protein SAWADEE HOMEODOMAIN HOMOLOG 2-like isoform X2 [Benincasa hispida])

HSP 1 Score: 414.5 bits (1064), Expect = 6.9e-112
Identity = 212/228 (92.98%), Postives = 218/228 (95.61%), Query Frame = 0


Query: 33  EVLVRFSGFGSEEDEWVNIRRNIRPRSLPCESSECVAVLPGDLILCFQEGKEQALYFDAH 92
           EVLVRFSGFGSEEDEWVNIRRNIRPRSLPCESSECVAVLPGDLILCFQEGKEQALYFDAH
Sbjct: 134 EVLVRFSGFGSEEDEWVNIRRNIRPRSLPCESSECVAVLPGDLILCFQEGKEQALYFDAH 193

Query: 93  VLDTQRRRHDVRGCRCRFLVRYDHDQSEEIVQLRKICRRPETDYRLQQLHAVNEAASIEP 152
           VLDTQRRRHDVRGCRCRFLVRYDHDQSEEIVQLRKICRRPETDYRLQQLHAVNEAASIEP
Sbjct: 194 VLDTQRRRHDVRGCRCRFLVRYDHDQSEEIVQLRKICRRPETDYRLQQLHAVNEAASIEP 253

Query: 153 SKSSMDSVLLSGQRINFETTQKPLSKDGALVIPNANANMNVQAQTSTQEASNTETNSAPT 212
           SKSSMDSVLLSGQRINFETTQKPL+KD  LVIPNANAN+NV AQT+TQEA NTETNSAPT
Sbjct: 254 SKSSMDSVLLSGQRINFETTQKPLNKDTTLVIPNANANINVHAQTNTQEARNTETNSAPT 313

Query: 213 TFHSGNHSAPNTFNTGNPAGSSAFSSGIMMNTVSSGSADNVSDGKLLS 261
           TF+SG HSAP TFN+GNPAG SAFS GI+ NTVS GSADNVSDGKLLS
Sbjct: 314 TFNSGIHSAPTTFNSGNPAGGSAFSVGIVTNTVSGGSADNVSDGKLLS 361

[Close]

BLAST of Lsi05G001290 vs. NCBI nr
Match: XP_038878066.1 (protein SAWADEE HOMEODOMAIN HOMOLOG 2-like isoform X1 [Benincasa hispida])

HSP 1 Score: 414.5 bits (1064), Expect = 6.9e-112
Identity = 212/228 (92.98%), Postives = 218/228 (95.61%), Query Frame = 0


Query: 33  EVLVRFSGFGSEEDEWVNIRRNIRPRSLPCESSECVAVLPGDLILCFQEGKEQALYFDAH 92
           EVLVRFSGFGSEEDEWVNIRRNIRPRSLPCESSECVAVLPGDLILCFQEGKEQALYFDAH
Sbjct: 155 EVLVRFSGFGSEEDEWVNIRRNIRPRSLPCESSECVAVLPGDLILCFQEGKEQALYFDAH 214

Query: 93  VLDTQRRRHDVRGCRCRFLVRYDHDQSEEIVQLRKICRRPETDYRLQQLHAVNEAASIEP 152
           VLDTQRRRHDVRGCRCRFLVRYDHDQSEEIVQLRKICRRPETDYRLQQLHAVNEAASIEP
Sbjct: 215 VLDTQRRRHDVRGCRCRFLVRYDHDQSEEIVQLRKICRRPETDYRLQQLHAVNEAASIEP 274

Query: 153 SKSSMDSVLLSGQRINFETTQKPLSKDGALVIPNANANMNVQAQTSTQEASNTETNSAPT 212
           SKSSMDSVLLSGQRINFETTQKPL+KD  LVIPNANAN+NV AQT+TQEA NTETNSAPT
Sbjct: 275 SKSSMDSVLLSGQRINFETTQKPLNKDTTLVIPNANANINVHAQTNTQEARNTETNSAPT 334

Query: 213 TFHSGNHSAPNTFNTGNPAGSSAFSSGIMMNTVSSGSADNVSDGKLLS 261
           TF+SG HSAP TFN+GNPAG SAFS GI+ NTVS GSADNVSDGKLLS
Sbjct: 335 TFNSGIHSAPTTFNSGNPAGGSAFSVGIVTNTVSGGSADNVSDGKLLS 382

[Close]

BLAST of Lsi05G001290 vs. NCBI nr
Match: XP_008456010.1 (PREDICTED: protein SAWADEE HOMEODOMAIN HOMOLOG 2 isoform X1 [Cucumis melo] >KAA0058840.1 SAWADEE HOMEODOMAIN-like protein 2 isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 403.7 bits (1036), Expect = 1.2e-108
Identity = 207/228 (90.79%), Postives = 213/228 (93.42%), Query Frame = 0


Query: 33  EVLVRFSGFGSEEDEWVNIRRNIRPRSLPCESSECVAVLPGDLILCFQEGKEQALYFDAH 92
           EVLVRFSGFGSEEDEWVNIRRNIRPRSLPCESSECVAVLPGDLILCFQEGKEQALYFDAH
Sbjct: 155 EVLVRFSGFGSEEDEWVNIRRNIRPRSLPCESSECVAVLPGDLILCFQEGKEQALYFDAH 214

Query: 93  VLDTQRRRHDVRGCRCRFLVRYDHDQSEEIVQLRKICRRPETDYRLQQLHAVNEAASIEP 152
           VLDTQRRRHDVRGCRCRFLVRYDHDQSEEIVQLRKICRRPETDYRLQQLHAVNEAASIEP
Sbjct: 215 VLDTQRRRHDVRGCRCRFLVRYDHDQSEEIVQLRKICRRPETDYRLQQLHAVNEAASIEP 274

Query: 153 SKSSMDSVLLSGQRINFETTQKPLSKDGALVIPNANANMNVQAQTSTQEASNTETNSAPT 212
           SKS MDSVLLSGQRINFET Q PLSKD ALVIPNAN ++N  AQTSTQEA NTETN+AP 
Sbjct: 275 SKSGMDSVLLSGQRINFETPQNPLSKDAALVIPNANPHINAHAQTSTQEARNTETNTAPI 334

Query: 213 TFHSGNHSAPNTFNTGNPAGSSAFSSGIMMNTVSSGSADNVSDGKLLS 261
           TF SGNH+AP TFN+ N AGSSAFSSGI+ NTVS GSADNVSDGKLLS
Sbjct: 335 TFSSGNHNAPTTFNSANLAGSSAFSSGIVTNTVSGGSADNVSDGKLLS 382

[Close]

BLAST of Lsi05G001290 vs. NCBI nr
Match: XP_008456011.1 (PREDICTED: protein SAWADEE HOMEODOMAIN HOMOLOG 2 isoform X2 [Cucumis melo])

HSP 1 Score: 403.7 bits (1036), Expect = 1.2e-108
Identity = 207/228 (90.79%), Postives = 213/228 (93.42%), Query Frame = 0


Query: 33  EVLVRFSGFGSEEDEWVNIRRNIRPRSLPCESSECVAVLPGDLILCFQEGKEQALYFDAH 92
           EVLVRFSGFGSEEDEWVNIRRNIRPRSLPCESSECVAVLPGDLILCFQEGKEQALYFDAH
Sbjct: 134 EVLVRFSGFGSEEDEWVNIRRNIRPRSLPCESSECVAVLPGDLILCFQEGKEQALYFDAH 193

Query: 93  VLDTQRRRHDVRGCRCRFLVRYDHDQSEEIVQLRKICRRPETDYRLQQLHAVNEAASIEP 152
           VLDTQRRRHDVRGCRCRFLVRYDHDQSEEIVQLRKICRRPETDYRLQQLHAVNEAASIEP
Sbjct: 194 VLDTQRRRHDVRGCRCRFLVRYDHDQSEEIVQLRKICRRPETDYRLQQLHAVNEAASIEP 253

Query: 153 SKSSMDSVLLSGQRINFETTQKPLSKDGALVIPNANANMNVQAQTSTQEASNTETNSAPT 212
           SKS MDSVLLSGQRINFET Q PLSKD ALVIPNAN ++N  AQTSTQEA NTETN+AP 
Sbjct: 254 SKSGMDSVLLSGQRINFETPQNPLSKDAALVIPNANPHINAHAQTSTQEARNTETNTAPI 313

Query: 213 TFHSGNHSAPNTFNTGNPAGSSAFSSGIMMNTVSSGSADNVSDGKLLS 261
           TF SGNH+AP TFN+ N AGSSAFSSGI+ NTVS GSADNVSDGKLLS
Sbjct: 314 TFSSGNHNAPTTFNSANLAGSSAFSSGIVTNTVSGGSADNVSDGKLLS 361

[Close]

BLAST of Lsi05G001290 vs. NCBI nr
Match: TYK11257.1 (protein SAWADEE HOMEODOMAIN-like protein 2 isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 401.0 bits (1029), Expect = 7.9e-108
Identity = 206/228 (90.35%), Postives = 212/228 (92.98%), Query Frame = 0


Query: 33  EVLVRFSGFGSEEDEWVNIRRNIRPRSLPCESSECVAVLPGDLILCFQEGKEQALYFDAH 92
           EVLVRFSGFGSEEDEWVNIRRNIRPRSLPCESSECVAVLPGDLILCFQEGKEQALYFDAH
Sbjct: 155 EVLVRFSGFGSEEDEWVNIRRNIRPRSLPCESSECVAVLPGDLILCFQEGKEQALYFDAH 214

Query: 93  VLDTQRRRHDVRGCRCRFLVRYDHDQSEEIVQLRKICRRPETDYRLQQLHAVNEAASIEP 152
           VLDTQRRRHDVRGCRCRFLVRYDH+QSEEIVQLRKICRRPETDYRLQQLHAVNEAASIEP
Sbjct: 215 VLDTQRRRHDVRGCRCRFLVRYDHNQSEEIVQLRKICRRPETDYRLQQLHAVNEAASIEP 274

Query: 153 SKSSMDSVLLSGQRINFETTQKPLSKDGALVIPNANANMNVQAQTSTQEASNTETNSAPT 212
           SKS MDSVLLSGQRINFET Q PLSKD ALVIPNAN + N  AQTSTQEA NTETN+AP 
Sbjct: 275 SKSGMDSVLLSGQRINFETPQNPLSKDAALVIPNANPHTNAHAQTSTQEARNTETNTAPI 334

Query: 213 TFHSGNHSAPNTFNTGNPAGSSAFSSGIMMNTVSSGSADNVSDGKLLS 261
           TF SGNH+AP TFN+ N AGSSAFSSGI+ NTVS GSADNVSDGKLLS
Sbjct: 335 TFSSGNHNAPTTFNSANLAGSSAFSSGIVTNTVSGGSADNVSDGKLLS 382

[Close]

BLAST of Lsi05G001290 vs. TAIR 10
Match: AT3G18380.1 (sequence-specific DNA binding transcription factors;sequence-specific DNA binding )

HSP 1 Score: 199.9 bits (507), Expect = 2.5e-51
Identity = 113/194 (58.25%), Postives = 138/194 (71.13%), Query Frame = 0


Query: 20  FLPLRSLIVVVSQEVLVRFSGFGSEEDEWVNIRRNIRPRSLPCESSECVAVLPGDLILCF 79
           FL  R+L  +   EV VRF+GF  EEDEW+N+++++R RSLPCE+SECVAVL GDL+LCF
Sbjct: 161 FLAHRNL-EIGDPEVQVRFAGFEVEEDEWINVKKHVRQRSLPCEASECVAVLAGDLVLCF 220

Query: 80  QEGKEQALYFDAHVLDTQRRRHDVRGCRCRFLVRYDHDQSEEIVQLRKICRRPETDYRLQ 139
           QEGK+QALYFDA VLD QRRRHDVRGCRCRFLVRY HDQSEEIV LRKICRRPETDYRLQ
Sbjct: 221 QEGKDQALYFDAIVLDAQRRRHDVRGCRCRFLVRYSHDQSEEIVPLRKICRRPETDYRLQ 280

Query: 140 QLH-AVNEAA-SIEPSKSSMDSVLLSGQRINFETTQKPLSKDGA---LVIPNA-NANMNV 199
           QLH AVN+ A S +    ++D+             + PLS  GA   +V P + + +++ 
Sbjct: 281 QLHNAVNDLANSNQHQIPALDA-----------AAKTPLSLPGATVPIVAPESKDPSLSA 340

Query: 200 QAQTSTQEASNTET 208
              T  Q +SN  T
Sbjct: 341 TPATLVQPSSNAAT 342

[Close]

BLAST of Lsi05G001290 vs. TAIR 10
Match: AT3G18380.2 (sequence-specific DNA binding transcription factors;sequence-specific DNA binding )

HSP 1 Score: 195.3 bits (495), Expect = 6.2e-50
Identity = 113/195 (57.95%), Postives = 138/195 (70.77%), Query Frame = 0


Query: 20  FLPLRSLIVVVSQEVLVRFSGFGSEEDEWVNIRRNIRPRSLPCESSECVAVLPGDLILCF 79
           FL  R+L  +   EV VRF+GF  EEDEW+N+++++R RSLPCE+SECVAVL GDL+LCF
Sbjct: 161 FLAHRNL-EIGDPEVQVRFAGFEVEEDEWINVKKHVRQRSLPCEASECVAVLAGDLVLCF 220

Query: 80  QEGKEQALYFDAHVLDTQRRRHDVRGCRCRFLVRYDHDQSE-EIVQLRKICRRPETDYRL 139
           QEGK+QALYFDA VLD QRRRHDVRGCRCRFLVRY HDQSE EIV LRKICRRPETDYRL
Sbjct: 221 QEGKDQALYFDAIVLDAQRRRHDVRGCRCRFLVRYSHDQSEQEIVPLRKICRRPETDYRL 280

Query: 140 QQLH-AVNEAA-SIEPSKSSMDSVLLSGQRINFETTQKPLSKDGA---LVIPNA-NANMN 199
           QQLH AVN+ A S +    ++D+             + PLS  GA   +V P + + +++
Sbjct: 281 QQLHNAVNDLANSNQHQIPALDA-----------AAKTPLSLPGATVPIVAPESKDPSLS 340

Query: 200 VQAQTSTQEASNTET 208
               T  Q +SN  T
Sbjct: 341 ATPATLVQPSSNAAT 343

[Close]

BLAST of Lsi05G001290 vs. TAIR 10
Match: AT3G18380.3 (sequence-specific DNA binding transcription factors;sequence-specific DNA binding )

HSP 1 Score: 195.3 bits (495), Expect = 6.2e-50
Identity = 113/195 (57.95%), Postives = 138/195 (70.77%), Query Frame = 0


Query: 20  FLPLRSLIVVVSQEVLVRFSGFGSEEDEWVNIRRNIRPRSLPCESSECVAVLPGDLILCF 79
           FL  R+L  +   EV VRF+GF  EEDEW+N+++++R RSLPCE+SECVAVL GDL+LCF
Sbjct: 158 FLAHRNL-EIGDPEVQVRFAGFEVEEDEWINVKKHVRQRSLPCEASECVAVLAGDLVLCF 217

Query: 80  QEGKEQALYFDAHVLDTQRRRHDVRGCRCRFLVRYDHDQSE-EIVQLRKICRRPETDYRL 139
           QEGK+QALYFDA VLD QRRRHDVRGCRCRFLVRY HDQSE EIV LRKICRRPETDYRL
Sbjct: 218 QEGKDQALYFDAIVLDAQRRRHDVRGCRCRFLVRYSHDQSEQEIVPLRKICRRPETDYRL 277

Query: 140 QQLH-AVNEAA-SIEPSKSSMDSVLLSGQRINFETTQKPLSKDGA---LVIPNA-NANMN 199
           QQLH AVN+ A S +    ++D+             + PLS  GA   +V P + + +++
Sbjct: 278 QQLHNAVNDLANSNQHQIPALDA-----------AAKTPLSLPGATVPIVAPESKDPSLS 337

Query: 200 VQAQTSTQEASNTET 208
               T  Q +SN  T
Sbjct: 338 ATPATLVQPSSNAAT 340

[Close]

BLAST of Lsi05G001290 vs. TAIR 10
Match: AT1G15215.2 (BEST Arabidopsis thaliana protein match is: sequence-specific DNA binding transcription factors;sequence-specific DNA binding (TAIR:AT3G18380.1); Has 89 Blast hits to 86 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 89; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 124.8 bits (312), Expect = 1.0e-28
Identity = 58/101 (57.43%), Postives = 73/101 (72.28%), Query Frame = 0


Query: 33  EVLVRFSGFGSEEDEWVNIRRNIRPRSLPCESSECVAVLPGDLILCFQEGKEQALYFDAH 92
           EV VRFSGF +  DEWVN++ ++R RS+P E SEC  V  GDL+LCFQE ++QALY D H
Sbjct: 157 EVRVRFSGFDNRHDEWVNVKTSVRERSIPVEPSECGRVNVGDLLLCFQEREDQALYCDGH 216

Query: 93  VLDTQRRRHDVRGCRCRFLVRYDHDQSEEIVQLRKICRRPE 134
           VL+ +R  HD   C C FLVRY+ D +EE + L +ICRRPE
Sbjct: 217 VLNIKRGIHDHARCNCVFLVRYELDNTEESLGLERICRRPE 257

[Close]

BLAST of Lsi05G001290 vs. TAIR 10
Match: AT1G15215.1 (BEST Arabidopsis thaliana protein match is: sequence-specific DNA binding transcription factors;sequence-specific DNA binding (TAIR:AT3G18380.1); Has 89 Blast hits to 86 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 89; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 108.6 bits (270), Expect = 7.6e-24
Identity = 50/88 (56.82%), Postives = 63/88 (71.59%), Query Frame = 0


Query: 33  EVLVRFSGFGSEEDEWVNIRRNIRPRSLPCESSECVAVLPGDLILCFQEGKEQALYFDAH 92
           EV VRFSGF +  DEWVN++ ++R RS+P E SEC  V  GDL+LCFQE ++QALY D H
Sbjct: 136 EVRVRFSGFDNRHDEWVNVKTSVRERSIPVEPSECGRVNVGDLLLCFQEREDQALYCDGH 195

Query: 93  VLDTQRRRHDVRGCRCRFLVRYDHDQSE 121
           VL+ +R  HD   C C FLVRY+ D +E
Sbjct: 196 VLNIKRGIHDHARCNCVFLVRYELDNTE 223

The following BLAST results are available for this feature:

BLAST of Lsi05G001290 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8RWJ7	3.5e-50	58.25	Protein SAWADEE HOMEODOMAIN HOMOLOG 2 OS=Arabidopsis thaliana OX=3702 GN=SHH2 PE...	[more]
Q9XI47	1.4e-27	57.43	Protein SAWADEE HOMEODOMAIN HOMOLOG 1 OS=Arabidopsis thaliana OX=3702 GN=SHH1 PE...	[more]

BLAST of Lsi05G001290 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UUV7	5.9e-109	90.79	SAWADEE HOMEODOMAIN-like protein 2 isoform X1 OS=Cucumis melo var. makuwa OX=119...	[more]
A0A1S3C274	5.9e-109	90.79	protein SAWADEE HOMEODOMAIN HOMOLOG 2 isoform X1 OS=Cucumis melo OX=3656 GN=LOC1...	[more]
A0A1S3C2X6	5.9e-109	90.79	protein SAWADEE HOMEODOMAIN HOMOLOG 2 isoform X2 OS=Cucumis melo OX=3656 GN=LOC1...	[more]
A0A5D3CH38	3.8e-108	90.35	Protein SAWADEE HOMEODOMAIN-like protein 2 isoform X1 OS=Cucumis melo var. makuw...	[more]
A0A0A0LC67	6.4e-103	87.72	SAWADEE domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G236580 PE=...	[more]

BLAST of Lsi05G001290 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038878067.1	6.9e-112	92.98	protein SAWADEE HOMEODOMAIN HOMOLOG 2-like isoform X2 [Benincasa hispida]	[more]
XP_038878066.1	6.9e-112	92.98	protein SAWADEE HOMEODOMAIN HOMOLOG 2-like isoform X1 [Benincasa hispida]	[more]
XP_008456010.1	1.2e-108	90.79	PREDICTED: protein SAWADEE HOMEODOMAIN HOMOLOG 2 isoform X1 [Cucumis melo] >KAA0...	[more]
XP_008456011.1	1.2e-108	90.79	PREDICTED: protein SAWADEE HOMEODOMAIN HOMOLOG 2 isoform X2 [Cucumis melo]	[more]
TYK11257.1	7.9e-108	90.35	protein SAWADEE HOMEODOMAIN-like protein 2 isoform X1 [Cucumis melo var. makuwa]	[more]

BLAST of Lsi05G001290 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G18380.1	2.5e-51	58.25	sequence-specific DNA binding transcription factors;sequence-specific DNA bindin...	[more]
AT3G18380.2	6.2e-50	57.95	sequence-specific DNA binding transcription factors;sequence-specific DNA bindin...	[more]
AT3G18380.3	6.2e-50	57.95	sequence-specific DNA binding transcription factors;sequence-specific DNA bindin...	[more]
AT1G15215.2	1.0e-28	57.43	BEST Arabidopsis thaliana protein match is: sequence-specific DNA binding transc...	[more]
AT1G15215.1	7.6e-24	56.82	BEST Arabidopsis thaliana protein match is: sequence-specific DNA binding transc...	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	2.40.50.40		coord: 16..61 e-value: 1.5E-12 score: 49.4
None	No IPR available	GENE3D	2.30.30.140		coord: 62..134 e-value: 5.5E-38 score: 130.5
None	No IPR available	PANTHER	PTHR33827:SF7	PROTEIN SAWADEE HOMEODOMAIN HOMOLOG 2	coord: 32..215
IPR032001	SAWADEE domain	PFAM	PF16719	SAWADEE	coord: 29..129 e-value: 3.4E-31 score: 108.1
IPR039276	Protein SAWADEE HOMEODOMAIN HOMOLOG 1/2	PANTHER	PTHR33827	PROTEIN SAWADEE HOMEODOMAIN HOMOLOG 2	coord: 32..215

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi05G001290.1	Lsi05G001290.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003682	chromatin binding
molecular_function	GO:0003677	DNA binding