
Lsi05G001290 (gene) Bottle gourd (USVL1VR-Ls) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGTTTCTTCCTCCAGTCCTTTTCTCCCTCCCTACCTTTGAGTTTGTATTGACGTATTTCCTACCTTTGAGTTTGTATTGACGTATTTAGGGTTAAGCAACAACTTATCTGACCAATATTTTGGTGATTCCCTAAAATGGTCCAAGATCTATATTTGATTGTAATTCCAAAGTTTGTCTCCTGATTTTTTTGTTGAGTACAACAAAAGTAGTGGTGAGAATGTGATTCTTTGGATCTCAAAGGAAGGAATAGCTGCATTTATCGTTGATGTTCATGATTTTTTATAAAGAAATTTGATGTTTTGATTTGTTCGCTTGAATCTGGCTCCTTATATTACCTAATAATTGTTGTTTGTCAGGAAGCCTAATAGTAGTTGTTTCTCAGGAAGTACTAGTTAGATTTTCTGGTTTTGGATCCGAGGAGGATGAGTGGGTTAATATCCGAAGAAACATTAGACCTCGTTCTCTACCTTGTGAATCATCAGAATGTGTGGCAGTTCTTCCAGGCGATCTCATCTTATGCTTTCAGGTAAAATCCTTTTTTACACTTCTCCAGACTTCCAATACTTAACGGGAGGCCTTTCCATCACCTTCTTGCAATGAATTCAGGATAATCTCTTTTACTAGGTTTATCTATATTGGACATAATCTCCGACTACCTTGTAAAACCACTCCCCTAGGTGGAGTACACAATGATCTTTTAACATTCTCACTAAAAAACTCAACACTCACTCTACCCTATAGGGAAACCTTTTTTTATGAGAAATTTCATTATCTTCAAAATTTTCAGGAGGGTAAAGAGCAGGCACTTTACTTTGATGCCCACGTGCTTGATACACAGCGAAGAAGACATGATGTACGGGGTTGTCGCTGCAGGTTTTTGGTTCGTTATGATCACGATCAATCTGAGGTGTATATCTTCTTCAGGTTCTTTTGGTTGTTTCTATTCAATATTGCTCTCCTAGCTCCAACATCAGCTTGGGGGTGGTTGCAATGAACACAAACATCACATCAATATAACAATTATTTTGTGGTTCACTAGAAACGAAGCTCTTTTTCTGTGTAATCTTGTTTGTGTTAATTCCACATGGGCTGAAGAAGCTTTCGATCTGGGTAAAATTGGAAATTAAGAGCCTGGTTAGTGGTTGCTGATGTCAGTTCTCTTTTCTTTTTTCTTTCTTTCTTCTTCTTCTTCTAAAAAGAGTTTATTTTGGTAAAAAGCAAGTACTGTGTTATTTAATCAGGCATTGACTGCTGTTCCGGATTATTGATTTCTCTTGCTTTAAATTATTGGTAGGAAATTGTTCAGTTGAGAAAGATTTGCCGTCGGCCTGAGACTGATTACCGGTTGCAACAGCTTCACGCGGTAAATGAAGCAGCATCCATTGAGCCCTCAAAGTCTAGCATGGATTCTGTATTGCTTAGTGGCCAGAGGATAAATTTCGAGACAACACAAAAGCCGCTTAGCAAGGATGGAGCCTTGGTTATACCAAATGCAAATGCCAATATGAATGTCCAAGCCCAAACTAGTACTCAGGAAGCAAGCAATACTGAAACTAACAGTGCTCCAACCACATTCCACTCTGGTAATCACAGTGCTCCAAATACATTCAACACTGGTAATCCAGCAGGTAGCTCTGCCTTCTCGAGTGGTATCATGATGAACACTGTTTCTAGTGGGTCGGCTGACAATGTGTCTGATGGGAAGTTACTTAGTTGA ATGTTTCTTCCTCCAGTCCTTTTCTCCCTCCCTACCTTTGAGTTTGTATTGACGTATTTCCTACCTTTGAGAAGCCTAATAGTAGTTGTTTCTCAGGAAGTACTAGTTAGATTTTCTGGTTTTGGATCCGAGGAGGATGAGTGGGTTAATATCCGAAGAAACATTAGACCTCGTTCTCTACCTTGTGAATCATCAGAATGTGTGGCAGTTCTTCCAGGCGATCTCATCTTATGCTTTCAGGAGGGTAAAGAGCAGGCACTTTACTTTGATGCCCACGTGCTTGATACACAGCGAAGAAGACATGATGTACGGGGTTGTCGCTGCAGGTTTTTGGTTCGTTATGATCACGATCAATCTGAGGAAATTGTTCAGTTGAGAAAGATTTGCCGTCGGCCTGAGACTGATTACCGGTTGCAACAGCTTCACGCGGTAAATGAAGCAGCATCCATTGAGCCCTCAAAGTCTAGCATGGATTCTGTATTGCTTAGTGGCCAGAGGATAAATTTCGAGACAACACAAAAGCCGCTTAGCAAGGATGGAGCCTTGGTTATACCAAATGCAAATGCCAATATGAATGTCCAAGCCCAAACTAGTACTCAGGAAGCAAGCAATACTGAAACTAACAGTGCTCCAACCACATTCCACTCTGGTAATCACAGTGCTCCAAATACATTCAACACTGGTAATCCAGCAGGTAGCTCTGCCTTCTCGAGTGGTATCATGATGAACACTGTTTCTAGTGGGTCGGCTGACAATGTGTCTGATGGGAAGTTACTTAGTTGA ATGTTTCTTCCTCCAGTCCTTTTCTCCCTCCCTACCTTTGAGTTTGTATTGACGTATTTCCTACCTTTGAGAAGCCTAATAGTAGTTGTTTCTCAGGAAGTACTAGTTAGATTTTCTGGTTTTGGATCCGAGGAGGATGAGTGGGTTAATATCCGAAGAAACATTAGACCTCGTTCTCTACCTTGTGAATCATCAGAATGTGTGGCAGTTCTTCCAGGCGATCTCATCTTATGCTTTCAGGAGGGTAAAGAGCAGGCACTTTACTTTGATGCCCACGTGCTTGATACACAGCGAAGAAGACATGATGTACGGGGTTGTCGCTGCAGGTTTTTGGTTCGTTATGATCACGATCAATCTGAGGAAATTGTTCAGTTGAGAAAGATTTGCCGTCGGCCTGAGACTGATTACCGGTTGCAACAGCTTCACGCGGTAAATGAAGCAGCATCCATTGAGCCCTCAAAGTCTAGCATGGATTCTGTATTGCTTAGTGGCCAGAGGATAAATTTCGAGACAACACAAAAGCCGCTTAGCAAGGATGGAGCCTTGGTTATACCAAATGCAAATGCCAATATGAATGTCCAAGCCCAAACTAGTACTCAGGAAGCAAGCAATACTGAAACTAACAGTGCTCCAACCACATTCCACTCTGGTAATCACAGTGCTCCAAATACATTCAACACTGGTAATCCAGCAGGTAGCTCTGCCTTCTCGAGTGGTATCATGATGAACACTGTTTCTAGTGGGTCGGCTGACAATGTGTCTGATGGGAAGTTACTTAGTTGA MFLPPVLFSLPTFEFVLTYFLPLRSLIVVVSQEVLVRFSGFGSEEDEWVNIRRNIRPRSLPCESSECVAVLPGDLILCFQEGKEQALYFDAHVLDTQRRRHDVRGCRCRFLVRYDHDQSEEIVQLRKICRRPETDYRLQQLHAVNEAASIEPSKSSMDSVLLSGQRINFETTQKPLSKDGALVIPNANANMNVQAQTSTQEASNTETNSAPTTFHSGNHSAPNTFNTGNPAGSSAFSSGIMMNTVSSGSADNVSDGKLLS Homology
BLAST of Lsi05G001290 vs. ExPASy Swiss-Prot
Match: Q8RWJ7 (Protein SAWADEE HOMEODOMAIN HOMOLOG 2 OS=Arabidopsis thaliana OX=3702 GN=SHH2 PE=2 SV=1) HSP 1 Score: 199.9 bits (507), Expect = 3.5e-50 Identity = 113/194 (58.25%), Postives = 138/194 (71.13%), Query Frame = 0
BLAST of Lsi05G001290 vs. ExPASy Swiss-Prot
Match: Q9XI47 (Protein SAWADEE HOMEODOMAIN HOMOLOG 1 OS=Arabidopsis thaliana OX=3702 GN=SHH1 PE=1 SV=1) HSP 1 Score: 124.8 bits (312), Expect = 1.4e-27 Identity = 58/101 (57.43%), Postives = 73/101 (72.28%), Query Frame = 0
BLAST of Lsi05G001290 vs. ExPASy TrEMBL
Match: A0A5A7UUV7 (SAWADEE HOMEODOMAIN-like protein 2 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold803G00380 PE=4 SV=1) HSP 1 Score: 403.7 bits (1036), Expect = 5.9e-109 Identity = 207/228 (90.79%), Postives = 213/228 (93.42%), Query Frame = 0
BLAST of Lsi05G001290 vs. ExPASy TrEMBL
Match: A0A1S3C274 (protein SAWADEE HOMEODOMAIN HOMOLOG 2 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103496064 PE=4 SV=1) HSP 1 Score: 403.7 bits (1036), Expect = 5.9e-109 Identity = 207/228 (90.79%), Postives = 213/228 (93.42%), Query Frame = 0
BLAST of Lsi05G001290 vs. ExPASy TrEMBL
Match: A0A1S3C2X6 (protein SAWADEE HOMEODOMAIN HOMOLOG 2 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103496064 PE=4 SV=1) HSP 1 Score: 403.7 bits (1036), Expect = 5.9e-109 Identity = 207/228 (90.79%), Postives = 213/228 (93.42%), Query Frame = 0
BLAST of Lsi05G001290 vs. ExPASy TrEMBL
Match: A0A5D3CH38 (Protein SAWADEE HOMEODOMAIN-like protein 2 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold227G001130 PE=4 SV=1) HSP 1 Score: 401.0 bits (1029), Expect = 3.8e-108 Identity = 206/228 (90.35%), Postives = 212/228 (92.98%), Query Frame = 0
BLAST of Lsi05G001290 vs. ExPASy TrEMBL
Match: A0A0A0LC67 (SAWADEE domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G236580 PE=4 SV=1) HSP 1 Score: 383.6 bits (984), Expect = 6.4e-103 Identity = 200/228 (87.72%), Postives = 207/228 (90.79%), Query Frame = 0
BLAST of Lsi05G001290 vs. NCBI nr
Match: XP_038878067.1 (protein SAWADEE HOMEODOMAIN HOMOLOG 2-like isoform X2 [Benincasa hispida]) HSP 1 Score: 414.5 bits (1064), Expect = 6.9e-112 Identity = 212/228 (92.98%), Postives = 218/228 (95.61%), Query Frame = 0
BLAST of Lsi05G001290 vs. NCBI nr
Match: XP_038878066.1 (protein SAWADEE HOMEODOMAIN HOMOLOG 2-like isoform X1 [Benincasa hispida]) HSP 1 Score: 414.5 bits (1064), Expect = 6.9e-112 Identity = 212/228 (92.98%), Postives = 218/228 (95.61%), Query Frame = 0
BLAST of Lsi05G001290 vs. NCBI nr
Match: XP_008456010.1 (PREDICTED: protein SAWADEE HOMEODOMAIN HOMOLOG 2 isoform X1 [Cucumis melo] >KAA0058840.1 SAWADEE HOMEODOMAIN-like protein 2 isoform X1 [Cucumis melo var. makuwa]) HSP 1 Score: 403.7 bits (1036), Expect = 1.2e-108 Identity = 207/228 (90.79%), Postives = 213/228 (93.42%), Query Frame = 0
BLAST of Lsi05G001290 vs. NCBI nr
Match: XP_008456011.1 (PREDICTED: protein SAWADEE HOMEODOMAIN HOMOLOG 2 isoform X2 [Cucumis melo]) HSP 1 Score: 403.7 bits (1036), Expect = 1.2e-108 Identity = 207/228 (90.79%), Postives = 213/228 (93.42%), Query Frame = 0
BLAST of Lsi05G001290 vs. NCBI nr
Match: TYK11257.1 (protein SAWADEE HOMEODOMAIN-like protein 2 isoform X1 [Cucumis melo var. makuwa]) HSP 1 Score: 401.0 bits (1029), Expect = 7.9e-108 Identity = 206/228 (90.35%), Postives = 212/228 (92.98%), Query Frame = 0
BLAST of Lsi05G001290 vs. TAIR 10
Match: AT3G18380.1 (sequence-specific DNA binding transcription factors;sequence-specific DNA binding ) HSP 1 Score: 199.9 bits (507), Expect = 2.5e-51 Identity = 113/194 (58.25%), Postives = 138/194 (71.13%), Query Frame = 0
BLAST of Lsi05G001290 vs. TAIR 10
Match: AT3G18380.2 (sequence-specific DNA binding transcription factors;sequence-specific DNA binding ) HSP 1 Score: 195.3 bits (495), Expect = 6.2e-50 Identity = 113/195 (57.95%), Postives = 138/195 (70.77%), Query Frame = 0
BLAST of Lsi05G001290 vs. TAIR 10
Match: AT3G18380.3 (sequence-specific DNA binding transcription factors;sequence-specific DNA binding ) HSP 1 Score: 195.3 bits (495), Expect = 6.2e-50 Identity = 113/195 (57.95%), Postives = 138/195 (70.77%), Query Frame = 0
BLAST of Lsi05G001290 vs. TAIR 10
Match: AT1G15215.2 (BEST Arabidopsis thaliana protein match is: sequence-specific DNA binding transcription factors;sequence-specific DNA binding (TAIR:AT3G18380.1); Has 89 Blast hits to 86 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 89; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 124.8 bits (312), Expect = 1.0e-28 Identity = 58/101 (57.43%), Postives = 73/101 (72.28%), Query Frame = 0
BLAST of Lsi05G001290 vs. TAIR 10
Match: AT1G15215.1 (BEST Arabidopsis thaliana protein match is: sequence-specific DNA binding transcription factors;sequence-specific DNA binding (TAIR:AT3G18380.1); Has 89 Blast hits to 86 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 89; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 108.6 bits (270), Expect = 7.6e-24 Identity = 50/88 (56.82%), Postives = 63/88 (71.59%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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