Lsi05G001280 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi05G001280
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	protein SAWADEE HOMEODOMAIN HOMOLOG 2-like
Location	chr05: 1935860 .. 1939446 (+)
RNA-Seq Expression	Lsi05G001280
Synteny	Lsi05G001280

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTCGGCCTCCCAGCAATGGAGGCCCTGCCTTCCGCTTCACGGCTTCCGAGGTTTTTCTCCGCTTCTTCTTCTTCCTCTTTTCTTGTTTTTCCCTCTTTTTTTTCTTTTTCTTTTTTCTTACTGTGAATGATGCGTTCGTGATGCATGTTCGATGTTGGAGTTGAAATTTTTTCTGGGTTTGTTCAATTGCTACATCTATTGGCTTGATTGATTATTTTTTTAAACAAAAGATTGTGTTTACTGGTTATTGTGCTTGTTTTCCTTTTTTCTATATTGGTCTTTTATGGAGGTTTCTAATCGTGTTCTTTTGAACTCATTAGCTGTTTCGTTATTTTCTTACTCGTATTCTGTTTTTTTTCCTTACATTTTCCCCATTTCTTATTCCACTGGTAATTGTGTTTTTCCCCTTTTGAGTTACGATGCCCTGCCCCCAAATTACTACTCCTGTAATTGGTTTGCTTAATTGCATAGAGTCGAGGCTATGGTTAGTGTAGGTGTAGTTAGCTGCATTTAGGTAAAGATTGCAGAGAGGGAAACAGTTGGGGTTTGCTGGATAACGGTAATTTGAAAGAGTGCCATTTTCAATCAGCCTTTCCATCTTTATGTTTTGGTGAGTGGTGACAGAGAATTTGAAGTTGCTGGGAGTTGAACTTTTGGTTTACAGCTTTTAATTCCATCTTTATGTTTTGGTGAGTGGTGACAGAGAATTTGAAGTTGCTGGGAGTTGAACTTTTGGTTTACAGCTTTTGATAAAATTTGTTCCAAATAGATCTAACCATTGAAATTTTAGTGGAAATTGTGTTGAGACCCTCATATTCGAAACGGAACAGTTTGAATTCTTTGGGCCTTTTTGCTATTCAATCTGCAAGAAGTTAATTAATTTTCCTGCCGGATGTATTTTGTTTTACAAGGAAGTACATTCTTGATAAGGAATTGAAAATTATTTTAATCAATGAAGTTTTTCTGTTTTTGCTTTAAGGCTGCCATTATAGTTGTTTCTAGGCATCATACTCTCATAGGGTACACTTTCTCAGAACTTCCGGTGATGTAATATTCAATTCTTATTTTATCAAGGTCGCGGAGATGGAAGCTATATTGCAAGGACACAATAATACCATGCCATCTCGGGAAGTTCTCGTTGCCCTTGCTGAGAAGTTTAGGTGCGCATTGAGCAGTAGCCAACTGTGGCTTTTATTAAATTCGAATTGATCTTTGTACGGTTTTTTTTTTATAAAAGACAGGATCGAATAGTCAAAAGAATAATTTGTTTATGTTGTTATAGTGAATCAGTAGAACGGAAAGGGAAGATTGCTGTGCAAATGAAGCAAGTATGGTGGCTTCTGTTCTATACTTGACCTTGATTATGATAAATAGAGGAGTTCTGCTAATTATTATGATCATTTCTTAGGTTTGGAATTGGTTCCAGAATAGACGATATGCTATCAGAGCAAAGACAACCAAGGCTCCTGGAAAGTTAGCTGTCTCTCCAATTGTCCAAATTGAGTCAACTCCCGTGAGAAATGTGCCTCAAACCATAGTTGTTCCTGCTCCCGCACCAGTAGGTATTAAAAAACATTGTTATGTTTTTAAATATTCTCATTTCCTTATCCTGTTTTTTCTTTTATTTTTATTACATGTTTATTATTAGCTTATCATCACAAATCCATCCTAGTAGTAGAATTGTGTTCGTCAAAGCCTCAGTCTAGGCTTCTATCCTCATTTAAAAACTTTTCCTCTATTGATTGCTAGTCAAGGGGAAAAAGGTATATGTGGAGGTGTGGGAGCTTTAATGGCCCTAAATCTTTGTTTTGATTTCTACGTTCTTATGAAATTATTATGAAAAAACAAACTGCAAATTGAGCTGCTAGCTTTTATTGTCCCCTTGTCCTTCTCAAGGCTTTTCTCCTGGCTCTCTTTTCCACCTCCTGAGCATTCCCTCATTCCCCCCGGTCCCCTCCTTTGTTCCCTTGATTTGGAAGGTTAAAATTCAGAAGGTTAGATTCTTGGCTTAGCAGGTCTTACATGAGAGAGTTAATACTATGGACCATGTGCAGAGGGACTCTACCTTCTTTCTTGGGCCTCAGTGGTGTTCCTTTCGTTGAGGAGCCACATAAGACCTTGATCAAATTCTTTGGAGCTGCCAGTTTCCTCTTTCAATTTGTTTCTTGGTTTTTGGGGGCCTTTAGTGTGTCTTTGGCTTTGAATAGGAATTGCATGGCCATGTTGGAAGAGGTTCTGCTTTTTCCTCCCTTTAGGGAGAAGGGAAAATTATGGCAAACTTACTTTTTTGCTGTTGTTTGGAGGATTTGGCTTAGAGAGGAATAATAGATTTTTCTTTAAAGGGAACATTCGGTTTAATACCTCAGTGGTTGAGGTATTTTGTTATTATCAGTTGAATCTTATTCTTTCGAATTGGAGCATTTGTTGTTGTTATATGGGTTCTTTTTGTTGGTTTGTTTGTTTTGGGTCTGCCCTGTATATTCTTTCATATTTCTCAATGGAAGCTAGTTTGTAAGGAGAGTTCCCGTGGTTCCTTGCACTTATAAGATTCTACTTATGTACAGAGAGCATTTAGGTGTATTTTTTTAATGCCAGGGTTTACTGTGTGAGTATTGTTTCTTCAATTGGAAGTTTGTGTTTATGGTACATGTTTCCAACAAGAAGTTACTATGGTCTTGATACATCTTATTCTATAATATTATTGCAGTCAATTTAAATCTTCAAATTTATTTTAAAAGATAATTAAACCTTTCCCGTGAAGGTTCTCAATAGCTTTCTTGGTCCTACGAGTCTGAAGGAAATCCATGATATATTGTTTTACATTAAATCATGGGTTGGCCATGTTTATGTCCTATGAAGAACTATAATTTTTTAGAATGACATGGTGTGGAAAGGTATGAAGCACGGATGCTTCAGTTTGGATAGCGTGTGAACAAATTATATGTGTGCAAAAACTTGTTGGATGTGTTGACCACTTGACACATATTAGACGCCTGAGAGTATATGTCAGTGTCAAACAATTCTTGGACACTTAAAATAAAGTGTTCAGTTTATTGGCGTTCTATTTTCTGTATTGGACGTGTTGAACACTTGACACATGTTGAACGCTTGAGAGTATATGTCAGTGTCAAACAATTGTTGGACACTTAAAATAAAGTGTTCAATTTATTGGTGTTCTATTTTTTGTTTATTTATTTAGTGTTGAAAAAAAGTGGAATAAAAAAGGTATGAGAGAACAATAACAAATTTTGAGAGGAAAGACCAAACTTGTTTTTTATGCATATAAATGGATAATCACCGTTGATTCTAGATTTCTTTTTTTTTGAAGATGATTCATATTGGAACATGTGTAAGTTTGTTTTTGGATTATTTATTTATTGTCTATATTATTAATTCTAAGTACTCGAGACGTGGTGTTTGGGGGGGGGGGGGTTTGCGAAGCTATTATCTTATTGACATCAGCAACTTTTAATTTTTCATTCAATTTCTGTGCCAAATTCCAGGCTCTGCAAAGGGTGCTCCAGAAAATCCGTTGTCGGAATTTGAAGCTAAATCTGGGAGGGATGGTGCATGGTTAGTATAG

mRNA sequence

ATGGGTCGGCCTCCCAGCAATGGAGGCCCTGCCTTCCGCTTCACGGCTTCCGAGGCATCATACTCTCATAGGGTACACTTTCTCAGAACTTCCGGTGATGTAATATTCAATTCTTATTTTATCAAGGTCGCGGAGATGGAAGCTATATTGCAAGGACACAATAATACCATGCCATCTCGGGAAGTTCTCGTTGCCCTTGCTGAGAAGTTTAGGTGCGCATTGAGCAGTAGCCAACTTGAATCAGTAGAACGGAAAGGGAAGATTGCTGTGCAAATGAAGCAAGTTTGGAATTGGTTCCAGAATAGACGATATGCTATCAGAGCAAAGACAACCAAGGCTCCTGGAAAGTTAGCTGTCTCTCCAATTGTCCAAATTGAGTCAACTCCCGTGAGAAATGTGCCTCAAACCATAGTTGTTCCTGCTCCCGCACCAGTAGCTTATCATCACAAATCCATCCTAGTAGTAGAATTGTGTTCGTCAAAGCCTCAGGTTTACTGTGTGAGTATTGTTTCTTCAATTGGAAGCTCTGCAAAGGGTGCTCCAGAAAATCCGTTGTCGGAATTTGAAGCTAAATCTGGGAGGGATGGTGCATGGTTAGTATAG

Coding sequence (CDS)

ATGGGTCGGCCTCCCAGCAATGGAGGCCCTGCCTTCCGCTTCACGGCTTCCGAGGCATCATACTCTCATAGGGTACACTTTCTCAGAACTTCCGGTGATGTAATATTCAATTCTTATTTTATCAAGGTCGCGGAGATGGAAGCTATATTGCAAGGACACAATAATACCATGCCATCTCGGGAAGTTCTCGTTGCCCTTGCTGAGAAGTTTAGGTGCGCATTGAGCAGTAGCCAACTTGAATCAGTAGAACGGAAAGGGAAGATTGCTGTGCAAATGAAGCAAGTTTGGAATTGGTTCCAGAATAGACGATATGCTATCAGAGCAAAGACAACCAAGGCTCCTGGAAAGTTAGCTGTCTCTCCAATTGTCCAAATTGAGTCAACTCCCGTGAGAAATGTGCCTCAAACCATAGTTGTTCCTGCTCCCGCACCAGTAGCTTATCATCACAAATCCATCCTAGTAGTAGAATTGTGTTCGTCAAAGCCTCAGGTTTACTGTGTGAGTATTGTTTCTTCAATTGGAAGCTCTGCAAAGGGTGCTCCAGAAAATCCGTTGTCGGAATTTGAAGCTAAATCTGGGAGGGATGGTGCATGGTTAGTATAG

Protein sequence

MGRPPSNGGPAFRFTASEASYSHRVHFLRTSGDVIFNSYFIKVAEMEAILQGHNNTMPSREVLVALAEKFRCALSSSQLESVERKGKIAVQMKQVWNWFQNRRYAIRAKTTKAPGKLAVSPIVQIESTPVRNVPQTIVVPAPAPVAYHHKSILVVELCSSKPQVYCVSIVSSIGSSAKGAPENPLSEFEAKSGRDGAWLV

Homology

[Close]

BLAST of Lsi05G001280 vs. ExPASy Swiss-Prot
Match: Q8RWJ7 (Protein SAWADEE HOMEODOMAIN HOMOLOG 2 OS=Arabidopsis thaliana OX=3702 GN=SHH2 PE=2 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 4.5e-29
Identity = 82/198 (41.41%), Postives = 103/198 (52.02%), Query Frame = 0


Query: 1   MGRPPSNGGPAFRFTASEASYSHRVHFLRTSGDVIFNSYFIKVAEMEAILQGHNNTMPSR 60
           MGRPPSNGGPAFRF   E                        V EMEAIL  HN  MP R
Sbjct: 1   MGRPPSNGGPAFRFILPE------------------------VTEMEAILLQHNTAMPGR 60

Query: 61  EVLVALAEKFRCALSSSQLESVERKGKIAVQMKQVWNWFQNRRYAIRAKTTKAPGKLAVS 120
            +L ALA+KF         ES ERKGK+ VQ KQ+WNWFQNRRYA+RA+  KAPGKL VS
Sbjct: 61  HILEALADKFS--------ESPERKGKVVVQFKQIWNWFQNRRYALRARGNKAPGKLNVS 120

Query: 121 PIVQIESTPVRNVPQTIVVPAPAPVAYHHKSILVVELCSSKPQVYCVSIVSSIGSSAKGA 180
            + +++   + N  ++++ P   P   H        +  + P +      S +    +  
Sbjct: 121 SMPRMD---LPNQMRSVIQPLSVPKTTH--------MTGNLPGMTPAPSGSLVPGVMRSG 155

Query: 181 PENPLSEFEAKSGRDGAW 199
            +N   EFEAKS RDGAW
Sbjct: 181 SDNSYLEFEAKSARDGAW 155

[Close]

BLAST of Lsi05G001280 vs. ExPASy TrEMBL
Match: A0A6J1CN90 (protein SAWADEE HOMEODOMAIN HOMOLOG 2 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111012828 PE=4 SV=1)

HSP 1 Score: 219.9 bits (559), Expect = 9.3e-54
Identity = 127/198 (64.14%), Postives = 133/198 (67.17%), Query Frame = 0


Query: 1   MGRPPSNGGPAFRFTASEASYSHRVHFLRTSGDVIFNSYFIKVAEMEAILQGHNNTMPSR 60
           MGRPPSNGGPAFRFTA+E                        VAEMEAILQGHNNTMP+R
Sbjct: 1   MGRPPSNGGPAFRFTAAE------------------------VAEMEAILQGHNNTMPAR 60

Query: 61  EVLVALAEKFRCALSSSQLESVERKGKIAVQMKQVWNWFQNRRYAIRAKTTKAPGKLAVS 120
           EVLVALAEKF         ES+ERKGKIAVQMKQVWNWFQNRRYAIRAK+TKAPGKLAVS
Sbjct: 61  EVLVALAEKFS--------ESIERKGKIAVQMKQVWNWFQNRRYAIRAKSTKAPGKLAVS 120

Query: 121 PIVQIESTPVRNVPQTIVVPAPAPVAYHHKSILVVELCSSKPQVYCVSIVSSIGSSAKGA 180
           PIVQIESTPVRNVPQ+IVVPAPAPV                              S KGA
Sbjct: 121 PIVQIESTPVRNVPQSIVVPAPAPV-----------------------------GSVKGA 137

Query: 181 PENPLSEFEAKSGRDGAW 199
           P+NPLSEFEAKS RDGAW
Sbjct: 181 PDNPLSEFEAKSARDGAW 137

[Close]

BLAST of Lsi05G001280 vs. ExPASy TrEMBL
Match: A0A6J1CLX5 (protein SAWADEE HOMEODOMAIN HOMOLOG 2 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111012828 PE=4 SV=1)

HSP 1 Score: 219.9 bits (559), Expect = 9.3e-54
Identity = 127/198 (64.14%), Postives = 133/198 (67.17%), Query Frame = 0


Query: 1   MGRPPSNGGPAFRFTASEASYSHRVHFLRTSGDVIFNSYFIKVAEMEAILQGHNNTMPSR 60
           MGRPPSNGGPAFRFTA+E                        VAEMEAILQGHNNTMP+R
Sbjct: 1   MGRPPSNGGPAFRFTAAE------------------------VAEMEAILQGHNNTMPAR 60

Query: 61  EVLVALAEKFRCALSSSQLESVERKGKIAVQMKQVWNWFQNRRYAIRAKTTKAPGKLAVS 120
           EVLVALAEKF         ES+ERKGKIAVQMKQVWNWFQNRRYAIRAK+TKAPGKLAVS
Sbjct: 61  EVLVALAEKFS--------ESIERKGKIAVQMKQVWNWFQNRRYAIRAKSTKAPGKLAVS 120

Query: 121 PIVQIESTPVRNVPQTIVVPAPAPVAYHHKSILVVELCSSKPQVYCVSIVSSIGSSAKGA 180
           PIVQIESTPVRNVPQ+IVVPAPAPV                              S KGA
Sbjct: 121 PIVQIESTPVRNVPQSIVVPAPAPV-----------------------------GSVKGA 137

Query: 181 PENPLSEFEAKSGRDGAW 199
           P+NPLSEFEAKS RDGAW
Sbjct: 181 PDNPLSEFEAKSARDGAW 137

[Close]

BLAST of Lsi05G001280 vs. ExPASy TrEMBL
Match: A0A5A7UUV7 (SAWADEE HOMEODOMAIN-like protein 2 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold803G00380 PE=4 SV=1)

HSP 1 Score: 219.5 bits (558), Expect = 1.2e-53
Identity = 126/198 (63.64%), Postives = 132/198 (66.67%), Query Frame = 0


Query: 1   MGRPPSNGGPAFRFTASEASYSHRVHFLRTSGDVIFNSYFIKVAEMEAILQGHNNTMPSR 60
           MGRPPSNGGPAFRFTASE                        VAEME ILQGHNNTMP+R
Sbjct: 1   MGRPPSNGGPAFRFTASE------------------------VAEMETILQGHNNTMPAR 60

Query: 61  EVLVALAEKFRCALSSSQLESVERKGKIAVQMKQVWNWFQNRRYAIRAKTTKAPGKLAVS 120
           EVLVALA+KF         ESVERKGKIAVQMKQVWNWFQNRRYAIRAKT+KAPGKLAVS
Sbjct: 61  EVLVALADKFS--------ESVERKGKIAVQMKQVWNWFQNRRYAIRAKTSKAPGKLAVS 120

Query: 121 PIVQIESTPVRNVPQTIVVPAPAPVAYHHKSILVVELCSSKPQVYCVSIVSSIGSSAKGA 180
           P+VQIESTPVRNVPQT+VVPAP PV                              +AK A
Sbjct: 121 PVVQIESTPVRNVPQTVVVPAPTPV-----------------------------GTAKSA 137

Query: 181 PENPLSEFEAKSGRDGAW 199
           PENPLSEFEAKSGRDGAW
Sbjct: 181 PENPLSEFEAKSGRDGAW 137

[Close]

BLAST of Lsi05G001280 vs. ExPASy TrEMBL
Match: A0A5D3CH38 (Protein SAWADEE HOMEODOMAIN-like protein 2 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold227G001130 PE=4 SV=1)

HSP 1 Score: 219.5 bits (558), Expect = 1.2e-53
Identity = 126/198 (63.64%), Postives = 132/198 (66.67%), Query Frame = 0


Query: 1   MGRPPSNGGPAFRFTASEASYSHRVHFLRTSGDVIFNSYFIKVAEMEAILQGHNNTMPSR 60
           MGRPPSNGGPAFRFTASE                        VAEME ILQGHNNTMP+R
Sbjct: 1   MGRPPSNGGPAFRFTASE------------------------VAEMETILQGHNNTMPAR 60

Query: 61  EVLVALAEKFRCALSSSQLESVERKGKIAVQMKQVWNWFQNRRYAIRAKTTKAPGKLAVS 120
           EVLVALA+KF         ESVERKGKIAVQMKQVWNWFQNRRYAIRAKT+KAPGKLAVS
Sbjct: 61  EVLVALADKFS--------ESVERKGKIAVQMKQVWNWFQNRRYAIRAKTSKAPGKLAVS 120

Query: 121 PIVQIESTPVRNVPQTIVVPAPAPVAYHHKSILVVELCSSKPQVYCVSIVSSIGSSAKGA 180
           P+VQIESTPVRNVPQT+VVPAP PV                              +AK A
Sbjct: 121 PVVQIESTPVRNVPQTVVVPAPTPV-----------------------------GTAKSA 137

Query: 181 PENPLSEFEAKSGRDGAW 199
           PENPLSEFEAKSGRDGAW
Sbjct: 181 PENPLSEFEAKSGRDGAW 137

[Close]

BLAST of Lsi05G001280 vs. ExPASy TrEMBL
Match: A0A1S3C274 (protein SAWADEE HOMEODOMAIN HOMOLOG 2 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103496064 PE=4 SV=1)

HSP 1 Score: 219.5 bits (558), Expect = 1.2e-53
Identity = 126/198 (63.64%), Postives = 132/198 (66.67%), Query Frame = 0


Query: 1   MGRPPSNGGPAFRFTASEASYSHRVHFLRTSGDVIFNSYFIKVAEMEAILQGHNNTMPSR 60
           MGRPPSNGGPAFRFTASE                        VAEME ILQGHNNTMP+R
Sbjct: 1   MGRPPSNGGPAFRFTASE------------------------VAEMETILQGHNNTMPAR 60

Query: 61  EVLVALAEKFRCALSSSQLESVERKGKIAVQMKQVWNWFQNRRYAIRAKTTKAPGKLAVS 120
           EVLVALA+KF         ESVERKGKIAVQMKQVWNWFQNRRYAIRAKT+KAPGKLAVS
Sbjct: 61  EVLVALADKFS--------ESVERKGKIAVQMKQVWNWFQNRRYAIRAKTSKAPGKLAVS 120

Query: 121 PIVQIESTPVRNVPQTIVVPAPAPVAYHHKSILVVELCSSKPQVYCVSIVSSIGSSAKGA 180
           P+VQIESTPVRNVPQT+VVPAP PV                              +AK A
Sbjct: 121 PVVQIESTPVRNVPQTVVVPAPTPV-----------------------------GTAKSA 137

Query: 181 PENPLSEFEAKSGRDGAW 199
           PENPLSEFEAKSGRDGAW
Sbjct: 181 PENPLSEFEAKSGRDGAW 137

[Close]

BLAST of Lsi05G001280 vs. NCBI nr
Match: XP_038878066.1 (protein SAWADEE HOMEODOMAIN HOMOLOG 2-like isoform X1 [Benincasa hispida])

HSP 1 Score: 228.0 bits (580), Expect = 7.1e-56
Identity = 133/198 (67.17%), Postives = 134/198 (67.68%), Query Frame = 0


Query: 1   MGRPPSNGGPAFRFTASEASYSHRVHFLRTSGDVIFNSYFIKVAEMEAILQGHNNTMPSR 60
           MGRPPSNGGPAFRFTASE                        VAEMEAILQGHNNTMP+R
Sbjct: 1   MGRPPSNGGPAFRFTASE------------------------VAEMEAILQGHNNTMPAR 60

Query: 61  EVLVALAEKFRCALSSSQLESVERKGKIAVQMKQVWNWFQNRRYAIRAKTTKAPGKLAVS 120
           EVLVALAEKF         ESVERKGKIAVQMKQVWNWFQNRRYAIRAKTTKAPGKLAVS
Sbjct: 61  EVLVALAEKFS--------ESVERKGKIAVQMKQVWNWFQNRRYAIRAKTTKAPGKLAVS 120

Query: 121 PIVQIESTPVRNVPQTIVVPAPAPVAYHHKSILVVELCSSKPQVYCVSIVSSIGSSAKGA 180
           PIVQIESTPVRNVPQTIVVPAP PV                              SAKGA
Sbjct: 121 PIVQIESTPVRNVPQTIVVPAPVPV-----------------------------GSAKGA 137

Query: 181 PENPLSEFEAKSGRDGAW 199
           PENPLSEFEAKSGRDGAW
Sbjct: 181 PENPLSEFEAKSGRDGAW 137

[Close]

BLAST of Lsi05G001280 vs. NCBI nr
Match: KAE8650545.1 (hypothetical protein Csa_011086 [Cucumis sativus])

HSP 1 Score: 226.1 bits (575), Expect = 2.7e-55
Identity = 130/198 (65.66%), Postives = 135/198 (68.18%), Query Frame = 0


Query: 1   MGRPPSNGGPAFRFTASEASYSHRVHFLRTSGDVIFNSYFIKVAEMEAILQGHNNTMPSR 60
           MGRPPSNGGPAFRFTASE                        VAEMEAILQGHNNTMP+R
Sbjct: 1   MGRPPSNGGPAFRFTASE------------------------VAEMEAILQGHNNTMPAR 60

Query: 61  EVLVALAEKFRCALSSSQLESVERKGKIAVQMKQVWNWFQNRRYAIRAKTTKAPGKLAVS 120
           EVLVALA+KF         ESVERKGKIAVQMKQVWNWFQNRRYAIRAKT+KAPGKLAVS
Sbjct: 61  EVLVALADKFS--------ESVERKGKIAVQMKQVWNWFQNRRYAIRAKTSKAPGKLAVS 120

Query: 121 PIVQIESTPVRNVPQTIVVPAPAPVAYHHKSILVVELCSSKPQVYCVSIVSSIGSSAKGA 180
           P+VQIESTPVRNVPQT+VVPAPAPV                              SAKGA
Sbjct: 121 PVVQIESTPVRNVPQTVVVPAPAPV-----------------------------GSAKGA 137

Query: 181 PENPLSEFEAKSGRDGAW 199
           PENPLSEFEAKSGRDGAW
Sbjct: 181 PENPLSEFEAKSGRDGAW 137

[Close]

BLAST of Lsi05G001280 vs. NCBI nr
Match: XP_022142790.1 (protein SAWADEE HOMEODOMAIN HOMOLOG 2 isoform X1 [Momordica charantia])

HSP 1 Score: 219.9 bits (559), Expect = 1.9e-53
Identity = 127/198 (64.14%), Postives = 133/198 (67.17%), Query Frame = 0


Query: 1   MGRPPSNGGPAFRFTASEASYSHRVHFLRTSGDVIFNSYFIKVAEMEAILQGHNNTMPSR 60
           MGRPPSNGGPAFRFTA+E                        VAEMEAILQGHNNTMP+R
Sbjct: 1   MGRPPSNGGPAFRFTAAE------------------------VAEMEAILQGHNNTMPAR 60

Query: 61  EVLVALAEKFRCALSSSQLESVERKGKIAVQMKQVWNWFQNRRYAIRAKTTKAPGKLAVS 120
           EVLVALAEKF         ES+ERKGKIAVQMKQVWNWFQNRRYAIRAK+TKAPGKLAVS
Sbjct: 61  EVLVALAEKFS--------ESIERKGKIAVQMKQVWNWFQNRRYAIRAKSTKAPGKLAVS 120

Query: 121 PIVQIESTPVRNVPQTIVVPAPAPVAYHHKSILVVELCSSKPQVYCVSIVSSIGSSAKGA 180
           PIVQIESTPVRNVPQ+IVVPAPAPV                              S KGA
Sbjct: 121 PIVQIESTPVRNVPQSIVVPAPAPV-----------------------------GSVKGA 137

Query: 181 PENPLSEFEAKSGRDGAW 199
           P+NPLSEFEAKS RDGAW
Sbjct: 181 PDNPLSEFEAKSARDGAW 137

[Close]

BLAST of Lsi05G001280 vs. NCBI nr
Match: XP_022142791.1 (protein SAWADEE HOMEODOMAIN HOMOLOG 2 isoform X2 [Momordica charantia])

HSP 1 Score: 219.9 bits (559), Expect = 1.9e-53
Identity = 127/198 (64.14%), Postives = 133/198 (67.17%), Query Frame = 0


Query: 1   MGRPPSNGGPAFRFTASEASYSHRVHFLRTSGDVIFNSYFIKVAEMEAILQGHNNTMPSR 60
           MGRPPSNGGPAFRFTA+E                        VAEMEAILQGHNNTMP+R
Sbjct: 1   MGRPPSNGGPAFRFTAAE------------------------VAEMEAILQGHNNTMPAR 60

Query: 61  EVLVALAEKFRCALSSSQLESVERKGKIAVQMKQVWNWFQNRRYAIRAKTTKAPGKLAVS 120
           EVLVALAEKF         ES+ERKGKIAVQMKQVWNWFQNRRYAIRAK+TKAPGKLAVS
Sbjct: 61  EVLVALAEKFS--------ESIERKGKIAVQMKQVWNWFQNRRYAIRAKSTKAPGKLAVS 120

Query: 121 PIVQIESTPVRNVPQTIVVPAPAPVAYHHKSILVVELCSSKPQVYCVSIVSSIGSSAKGA 180
           PIVQIESTPVRNVPQ+IVVPAPAPV                              S KGA
Sbjct: 121 PIVQIESTPVRNVPQSIVVPAPAPV-----------------------------GSVKGA 137

Query: 181 PENPLSEFEAKSGRDGAW 199
           P+NPLSEFEAKS RDGAW
Sbjct: 181 PDNPLSEFEAKSARDGAW 137

[Close]

BLAST of Lsi05G001280 vs. NCBI nr
Match: XP_008456010.1 (PREDICTED: protein SAWADEE HOMEODOMAIN HOMOLOG 2 isoform X1 [Cucumis melo] >KAA0058840.1 SAWADEE HOMEODOMAIN-like protein 2 isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 219.5 bits (558), Expect = 2.5e-53
Identity = 126/198 (63.64%), Postives = 132/198 (66.67%), Query Frame = 0


Query: 1   MGRPPSNGGPAFRFTASEASYSHRVHFLRTSGDVIFNSYFIKVAEMEAILQGHNNTMPSR 60
           MGRPPSNGGPAFRFTASE                        VAEME ILQGHNNTMP+R
Sbjct: 1   MGRPPSNGGPAFRFTASE------------------------VAEMETILQGHNNTMPAR 60

Query: 61  EVLVALAEKFRCALSSSQLESVERKGKIAVQMKQVWNWFQNRRYAIRAKTTKAPGKLAVS 120
           EVLVALA+KF         ESVERKGKIAVQMKQVWNWFQNRRYAIRAKT+KAPGKLAVS
Sbjct: 61  EVLVALADKFS--------ESVERKGKIAVQMKQVWNWFQNRRYAIRAKTSKAPGKLAVS 120

Query: 121 PIVQIESTPVRNVPQTIVVPAPAPVAYHHKSILVVELCSSKPQVYCVSIVSSIGSSAKGA 180
           P+VQIESTPVRNVPQT+VVPAP PV                              +AK A
Sbjct: 121 PVVQIESTPVRNVPQTVVVPAPTPV-----------------------------GTAKSA 137

Query: 181 PENPLSEFEAKSGRDGAW 199
           PENPLSEFEAKSGRDGAW
Sbjct: 181 PENPLSEFEAKSGRDGAW 137

[Close]

BLAST of Lsi05G001280 vs. TAIR 10
Match: AT3G18380.1 (sequence-specific DNA binding transcription factors;sequence-specific DNA binding )

HSP 1 Score: 129.4 bits (324), Expect = 3.2e-30
Identity = 82/198 (41.41%), Postives = 103/198 (52.02%), Query Frame = 0


Query: 1   MGRPPSNGGPAFRFTASEASYSHRVHFLRTSGDVIFNSYFIKVAEMEAILQGHNNTMPSR 60
           MGRPPSNGGPAFRF   E                        V EMEAIL  HN  MP R
Sbjct: 1   MGRPPSNGGPAFRFILPE------------------------VTEMEAILLQHNTAMPGR 60

Query: 61  EVLVALAEKFRCALSSSQLESVERKGKIAVQMKQVWNWFQNRRYAIRAKTTKAPGKLAVS 120
            +L ALA+KF         ES ERKGK+ VQ KQ+WNWFQNRRYA+RA+  KAPGKL VS
Sbjct: 61  HILEALADKFS--------ESPERKGKVVVQFKQIWNWFQNRRYALRARGNKAPGKLNVS 120

Query: 121 PIVQIESTPVRNVPQTIVVPAPAPVAYHHKSILVVELCSSKPQVYCVSIVSSIGSSAKGA 180
            + +++   + N  ++++ P   P   H        +  + P +      S +    +  
Sbjct: 121 SMPRMD---LPNQMRSVIQPLSVPKTTH--------MTGNLPGMTPAPSGSLVPGVMRSG 155

Query: 181 PENPLSEFEAKSGRDGAW 199
            +N   EFEAKS RDGAW
Sbjct: 181 SDNSYLEFEAKSARDGAW 155

[Close]

BLAST of Lsi05G001280 vs. TAIR 10
Match: AT3G18380.2 (sequence-specific DNA binding transcription factors;sequence-specific DNA binding )

HSP 1 Score: 129.4 bits (324), Expect = 3.2e-30
Identity = 82/198 (41.41%), Postives = 103/198 (52.02%), Query Frame = 0


Query: 1   MGRPPSNGGPAFRFTASEASYSHRVHFLRTSGDVIFNSYFIKVAEMEAILQGHNNTMPSR 60
           MGRPPSNGGPAFRF   E                        V EMEAIL  HN  MP R
Sbjct: 1   MGRPPSNGGPAFRFILPE------------------------VTEMEAILLQHNTAMPGR 60

Query: 61  EVLVALAEKFRCALSSSQLESVERKGKIAVQMKQVWNWFQNRRYAIRAKTTKAPGKLAVS 120
            +L ALA+KF         ES ERKGK+ VQ KQ+WNWFQNRRYA+RA+  KAPGKL VS
Sbjct: 61  HILEALADKFS--------ESPERKGKVVVQFKQIWNWFQNRRYALRARGNKAPGKLNVS 120

Query: 121 PIVQIESTPVRNVPQTIVVPAPAPVAYHHKSILVVELCSSKPQVYCVSIVSSIGSSAKGA 180
            + +++   + N  ++++ P   P   H        +  + P +      S +    +  
Sbjct: 121 SMPRMD---LPNQMRSVIQPLSVPKTTH--------MTGNLPGMTPAPSGSLVPGVMRSG 155

Query: 181 PENPLSEFEAKSGRDGAW 199
            +N   EFEAKS RDGAW
Sbjct: 181 SDNSYLEFEAKSARDGAW 155

[Close]

BLAST of Lsi05G001280 vs. TAIR 10
Match: AT3G18380.3 (sequence-specific DNA binding transcription factors;sequence-specific DNA binding )

HSP 1 Score: 128.3 bits (321), Expect = 7.1e-30
Identity = 83/198 (41.92%), Postives = 102/198 (51.52%), Query Frame = 0


Query: 1   MGRPPSNGGPAFRFTASEASYSHRVHFLRTSGDVIFNSYFIKVAEMEAILQGHNNTMPSR 60
           MGRPPSNGGPAFRF   E                        V EMEAIL  HN  MP R
Sbjct: 1   MGRPPSNGGPAFRFILPE------------------------VTEMEAILLQHNTAMPGR 60

Query: 61  EVLVALAEKFRCALSSSQLESVERKGKIAVQMKQVWNWFQNRRYAIRAKTTKAPGKLAVS 120
            +L ALA+KF         ES ERKGK+ VQ KQ+WNWFQNRRYA+RA+  KAPGKL VS
Sbjct: 61  HILEALADKFS--------ESPERKGKVVVQFKQIWNWFQNRRYALRARGNKAPGKLNVS 120

Query: 121 PIVQIESTPVRNVPQTIVVPAPAPVAYHHKSILVVELCSSKPQVYCVSIVSSIGSSAKGA 180
            + +++   + N  ++++ P   P   H    +   L    P         S+    +  
Sbjct: 121 SMPRMD---LPNQMRSVIQPLSVPKTTH----MTGNLPGMTP-------APSVPGVMRSG 152

Query: 181 PENPLSEFEAKSGRDGAW 199
            +N   EFEAKS RDGAW
Sbjct: 181 SDNSYLEFEAKSARDGAW 152

The following BLAST results are available for this feature:

BLAST of Lsi05G001280 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8RWJ7	4.5e-29	41.41	Protein SAWADEE HOMEODOMAIN HOMOLOG 2 OS=Arabidopsis thaliana OX=3702 GN=SHH2 PE...	[more]

BLAST of Lsi05G001280 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CN90	9.3e-54	64.14	protein SAWADEE HOMEODOMAIN HOMOLOG 2 isoform X2 OS=Momordica charantia OX=3673 ...	[more]
A0A6J1CLX5	9.3e-54	64.14	protein SAWADEE HOMEODOMAIN HOMOLOG 2 isoform X1 OS=Momordica charantia OX=3673 ...	[more]
A0A5A7UUV7	1.2e-53	63.64	SAWADEE HOMEODOMAIN-like protein 2 isoform X1 OS=Cucumis melo var. makuwa OX=119...	[more]
A0A5D3CH38	1.2e-53	63.64	Protein SAWADEE HOMEODOMAIN-like protein 2 isoform X1 OS=Cucumis melo var. makuw...	[more]
A0A1S3C274	1.2e-53	63.64	protein SAWADEE HOMEODOMAIN HOMOLOG 2 isoform X1 OS=Cucumis melo OX=3656 GN=LOC1...	[more]

BLAST of Lsi05G001280 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038878066.1	7.1e-56	67.17	protein SAWADEE HOMEODOMAIN HOMOLOG 2-like isoform X1 [Benincasa hispida]	[more]
KAE8650545.1	2.7e-55	65.66	hypothetical protein Csa_011086 [Cucumis sativus]	[more]
XP_022142790.1	1.9e-53	64.14	protein SAWADEE HOMEODOMAIN HOMOLOG 2 isoform X1 [Momordica charantia]	[more]
XP_022142791.1	1.9e-53	64.14	protein SAWADEE HOMEODOMAIN HOMOLOG 2 isoform X2 [Momordica charantia]	[more]
XP_008456010.1	2.5e-53	63.64	PREDICTED: protein SAWADEE HOMEODOMAIN HOMOLOG 2 isoform X1 [Cucumis melo] >KAA0...	[more]

BLAST of Lsi05G001280 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G18380.1	3.2e-30	41.41	sequence-specific DNA binding transcription factors;sequence-specific DNA bindin...	[more]
AT3G18380.2	3.2e-30	41.41	sequence-specific DNA binding transcription factors;sequence-specific DNA bindin...	[more]
AT3G18380.3	7.1e-30	41.92	sequence-specific DNA binding transcription factors;sequence-specific DNA bindin...	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	1.10.10.60		coord: 44..120 e-value: 1.1E-5 score: 27.5
None	No IPR available	PANTHER	PTHR33827:SF7	PROTEIN SAWADEE HOMEODOMAIN HOMOLOG 2	coord: 1..198
IPR039276	Protein SAWADEE HOMEODOMAIN HOMOLOG 1/2	PANTHER	PTHR33827	PROTEIN SAWADEE HOMEODOMAIN HOMOLOG 2	coord: 1..198
IPR001356	Homeobox domain	PROSITE	PS50071	HOMEOBOX_2	coord: 42..109 score: 8.502956
IPR001356	Homeobox domain	CDD	cd00086	homeodomain	coord: 69..107 e-value: 0.00140571 score: 33.7561
IPR009057	Homeobox-like domain superfamily	SUPERFAMILY	46689	Homeodomain-like	coord: 52..108

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi05G001280.1	Lsi05G001280.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003677	DNA binding