Lsi05G001270 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi05G001270
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Transcription elongation factor 1 homolog
Location	chr05: 1930920 .. 1933885 (+)
RNA-Seq Expression	Lsi05G001270
Synteny	Lsi05G001270

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CAATTCGATCAGCGATACGATTGCAATTGCGAACGATAATCCCTCCCAATTCGATCAGCGATCAGGTGCGTCTTCTTTATTCTCTCTTCTATTAGGGTTCGTAGTTCTAAGGTTTTATTAAGCTTTTGACTGTTAAATTATTGTGCTTTTTTCCTTATTGCCTGCAACTTAGGGTTCTACTTGTGGTGCGCTTCCCGTTCTTATGTAATTTTGAACGTTCTTTGCCTTTTTCGTTGCGATTGGTTATCCTTTCATGTTCCTGTTTCAATTTTTTTGGTGGAGTGGAGAATAGTATTGCTGGAATGCATATCTGGATTTTTCGTGTGAAATAGAGTAATTGGTGGCGTGGTAATGCTCTTATTGGATTTGGGAGACGGCGATTGAGTAACCTTTAGTTATGTTATCCGTGGCGAGAATGGAATTTTCCGGAAGTTTTGGTTATTATTTGCTTTTGGTTCTCACCGTAGTCGATGAATTTCCATGATTTTGTAGGGAAGTGAAACTTGCATCTCTAGTACCGTTTTACTTAATTCGGTATTTCATGAATTGGGTGTGAATGTTTTGGGATAATGAGGACGGGTGGTGAATACGAGTTTCATTGTATGAGGATTGGTAGCTTATTGACTGTGCTTGACCCGTCCCAACTCCACTCGTCTCCCCTCATCCTTCATCTTTTTACGAGCCTCATGAAGCACATTGGTATGACTTCATTCCTCCATGGACAAACGAGTTTTTCAATCCGGGGCTCACATACTTGCATTGGCGCCTTGGTTCAGAGACAATGGCCTCTGTATTATGGCTATTCCCGTTGGGACAACGAAAAACAACAAGCAGACAGTGAACAAGAGGAGCATTAGAGAGGTCCGAAACTTGGAATGCTCGAAGTCATAGGAGAAAAAAGCTACATTTTTGCTTCGAGAGGGGTTACTGACGGCATGAATATTAGCTCTTCGATCTCCCTTACTCTTTTTGGCTTTTTTCTCCACATCGGTTTCTTGTGACATTGTTATGGGTCACCAGAGAATGCTTTCAGCTTGGTTTTTGTTCTGCTTTTGGGGTGCTTAATGTTCAATGGATTGTTGTTTTGTTTAGTTTTCCCTTTTTTTAGGCATCTTGCATCGTCAATCCATTTTACATCTTGCTGGTTTTTCTATCCTTTTGGTCGCCCCCCTCCCTTATGGACTAAATTGTATATTTTTCTTTCGATTGGGTTGCCCTTGGTTCATCTTGTATCTCTTGTTATCTCTTTTTGGTGGCTTTGATCTACTCTTTGGATATTTTATTTATCATTGAGATTGTTTCTTATCCCAAAAAAAAAAAATAAAAATATATATAATATATATATATATATGTGCTCGAAAGATCTTCGCTTTATATCCTTTTAAGTTTGTTTACAACCCTCATTTTGAAGACTGATTGATATTGATGTTGTTATGGATGTGGACGGACAGCCTTACGCCACGAGAAATGGGGAAACGCAAGTCAAGAGCAAAGCCCCCACCTAAGAAGAGAATGGACAAGCTTGATACTGTTTTTAGCTGTCCTTTCTGCAATCATGGGACCAGTGTCGAATGTCGCATGTAAGTTTGCATTTGGTTCCTTTTGGGTTTTAGGTTCTTGTAACACGTGAGGGTGGGAGGGGCATGTTATAAGGGTTTTAGGATTTTCGTGGCATGGTGAAAAGGCTGGAACAGTGAATATGCATAATATTCAATAACTGTCTCATGGACTAGTCTCTCTGTTTAGGTGCCTCATTTGTTTTGCATTGTGACGAGGGTGTTTGTATGGTTTTTAGTGATATGAAGAACCTGATTGGGGAAGCCTCCTGTAGGATTTGCCAAGAAAGCTTTAGCACAACTATTACAGGTATTCTCTTTGAATCTCGCATTCGCTATCTGTTGTGTGTTTTACTACGTGCTTTATATGATGATGTGAAAGAAGCAATTTATGATTTGTTTTTAGGATTCTTCTTTTAGAATATTTTTTTACGGATATTTTTGTCCTTCTGGAGCAGTTTTTGTTTGATCTGAACCCTAAATAGTGCACAGGGCTATTGGATTATTCCAGAACGCCATTTTCTCTGTGCTTAAATAGATGGATCATTGGAAGCTTTGTCATGCAGTTGTCCCACCTTCCATCATCACTAGATTTTTGTTCCTGTTGTAGGGAAGTCTATCAGATGAAAATGCGTCCAAGTGTGTGTAGTGCATGATGTGCATCATGTATGATTTAGGTGGATTGAATTGTTTCCGTGTGTAATCCACGGCTTACTATTTGTTTTTATTAGTCTGTCTATGGAGAAATTTAGTTGCACTAACATTTCAATTCTTTTATTTTGCAGCGTTGAGTGAGGCAATAGACATGTAAGTACAAATTAAAAGCAACTGGTTTTTGTCAATATTGATGCTCTACAGTGCTTCAATTGACGTAATGTTGTTTTGCTTTTGATCAGATATAGTGAATGGATCGATGAATGTGAGCGGGTCAACACCCTTGAGGATGATGCTGCCTAGAGGAATTAATCGGGGAAGGTTGAAGGTTGCCGTTTTTCTATGAAAACGAAGCTGGCTAGTTCGAAGTTCCTTTATGAACCTAAATTAAGAGGGGGTCTTACTGGTAGTAGGTATAACAACACTTCTACCCTCGTAGCAGTATAGACTAGACAAGCATGTATGTATAGTAGTGTGTTGTATAACGGCTTGCACTTCGACTTTATTACGAATTTTACGTATTTGTAACCTGAATTACGAATCTTGGAGTTGGTATGTGCGGATGGGGAGGTGGGGTCCTGAACCAACTACCCTTTATTATTGCGAATAATTCAAGCTTCTTGTAAATGTAATGTTTAAGGATGTTCTTTTTCTTTAATGGTTGTTCTTTCATGCCATAGGACTTTTGAAATCGTTGAGATCGATTTTGCTTCATACCCATTTTTTATAAATTGTTTGAAACCAAGACTTTCCTAA

mRNA sequence

CAATTCGATCAGCGATACGATTGCAATTGCGAACGATAATCCCTCCCAATTCGATCAGCGATCAGCCTTACGCCACGAGAAATGGGGAAACGCAAGTCAAGAGCAAAGCCCCCACCTAAGAAGAGAATGGACAAGCTTGATACTGTTTTTAGCTGTCCTTTCTGCAATCATGGGACCAGTGTCGAATGTCGCATTGATATGAAGAACCTGATTGGGGAAGCCTCCTGTAGGATTTGCCAAGAAAGCTTTAGCACAACTATTACAGCGTTGAGTGAGGCAATAGACATATATAGTGAATGGATCGATGAATGTGAGCGGGTCAACACCCTTGAGGATGATGCTGCCTAGAGGAATTAATCGGGGAAGGTTGAAGGTTGCCGTTTTTCTATGAAAACGAAGCTGGCTAGTTCGAAGTTCCTTTATGAACCTAAATTAAGAGGGGGTCTTACTGGTAGTAGGTATAACAACACTTCTACCCTCGTAGCAGTATAGACTAGACAAGCATGTATGTATAGTAGTGTGTTGTATAACGGCTTGCACTTCGACTTTATTACGAATTTTACGTATTTGTAACCTGAATTACGAATCTTGGAGTTGGTATGTGCGGATGGGGAGGTGGGGTCCTGAACCAACTACCCTTTATTATTGCGAATAATTCAAGCTTCTTGTAAATGTAATGTTTAAGGATGTTCTTTTTCTTTAATGGTTGTTCTTTCATGCCATAGGACTTTTGAAATCGTTGAGATCGATTTTGCTTCATACCCATTTTTTATAAATTGTTTGAAACCAAGACTTTCCTAA

Coding sequence (CDS)

ATGGGGAAACGCAAGTCAAGAGCAAAGCCCCCACCTAAGAAGAGAATGGACAAGCTTGATACTGTTTTTAGCTGTCCTTTCTGCAATCATGGGACCAGTGTCGAATGTCGCATTGATATGAAGAACCTGATTGGGGAAGCCTCCTGTAGGATTTGCCAAGAAAGCTTTAGCACAACTATTACAGCGTTGAGTGAGGCAATAGACATATATAGTGAATGGATCGATGAATGTGAGCGGGTCAACACCCTTGAGGATGATGCTGCCTAG

Protein sequence

MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTITALSEAIDIYSEWIDECERVNTLEDDAA

Homology

[Close]

BLAST of Lsi05G001270 vs. ExPASy Swiss-Prot
Match: Q8LHP0 (Transcription elongation factor 1 homolog OS=Oryza sativa subsp. japonica OX=39947 GN=Os07g0631100 PE=3 SV=1)

HSP 1 Score: 167.5 bits (423), Expect = 6.6e-41
Identity = 77/86 (89.53%), Postives = 82/86 (95.35%), Query Frame = 0


Query: 1  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTI 60
          MGKRKS AKPPPKKRMDKLDTVFSCPFCNHG+SVECRIDMKNLIGEASCRICQE+FSTT+
Sbjct: 1  MGKRKSAAKPPPKKRMDKLDTVFSCPFCNHGSSVECRIDMKNLIGEASCRICQENFSTTV 60

Query: 61 TALSEAIDIYSEWIDECERVNTLEDD 87
           AL+E IDIYSEWIDECERVN +EDD
Sbjct: 61 NALTEPIDIYSEWIDECERVNNVEDD 86

[Close]

BLAST of Lsi05G001270 vs. ExPASy Swiss-Prot
Match: Q8LEF3 (Transcription elongation factor 1 homolog OS=Arabidopsis thaliana OX=3702 GN=At5g46030 PE=2 SV=1)

HSP 1 Score: 161.8 bits (408), Expect = 3.6e-39
Identity = 75/86 (87.21%), Postives = 82/86 (95.35%), Query Frame = 0


Query: 1  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTI 60
          MGKRKSRAKP P KRMDKLDT+FSCPFCNHG+SVEC IDMK+LIG+A+CRIC+ESFSTTI
Sbjct: 1  MGKRKSRAKPAPTKRMDKLDTIFSCPFCNHGSSVECIIDMKHLIGKAACRICEESFSTTI 60

Query: 61 TALSEAIDIYSEWIDECERVNTLEDD 87
          TAL+EAIDIYSEWIDECERVNT EDD
Sbjct: 61 TALTEAIDIYSEWIDECERVNTAEDD 86

[Close]

BLAST of Lsi05G001270 vs. ExPASy Swiss-Prot
Match: P36053 (Transcription elongation factor 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=ELF1 PE=1 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 3.7e-20
Identity = 43/82 (52.44%), Postives = 56/82 (68.29%), Query Frame = 0


Query: 1  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTI 60
          MGKRK   + P K+ + KLDT F+C FCNH  SV C +D KN IG  SC+IC +SF T I
Sbjct: 1  MGKRKKSTRKPTKRLVQKLDTKFNCLFCNHEKSVSCTLDKKNSIGTLSCKICGQSFQTRI 60

Query: 61 TALSEAIDIYSEWIDECERVNT 83
           +LS+ +D+YS+W D  E VN+
Sbjct: 61 NSLSQPVDVYSDWFDAVEEVNS 82

[Close]

BLAST of Lsi05G001270 vs. ExPASy Swiss-Prot
Match: A4IFR3 (Transcription elongation factor 1 homolog OS=Bos taurus OX=9913 GN=ELOF1 PE=3 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 6.4e-20
Identity = 44/82 (53.66%), Postives = 56/82 (68.29%), Query Frame = 0


Query: 1  MGKRKSRAKPPPKKRM-DKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTT 60
          MG+RKS+ KPPPKK+M   L+T F+CPFCNH  S + ++D     G  SC +C E F T 
Sbjct: 1  MGRRKSKRKPPPKKKMTGTLETQFTCPFCNHEKSCDVKMDRARNTGVISCTVCLEEFQTP 60

Query: 61 ITALSEAIDIYSEWIDECERVN 82
          IT LSE +D+YS+WID CE  N
Sbjct: 61 ITYLSEPVDVYSDWIDACEAAN 82

[Close]

BLAST of Lsi05G001270 vs. ExPASy Swiss-Prot
Match: P60002 (Transcription elongation factor 1 homolog OS=Homo sapiens OX=9606 GN=ELOF1 PE=1 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 6.4e-20
Identity = 44/82 (53.66%), Postives = 56/82 (68.29%), Query Frame = 0


Query: 1  MGKRKSRAKPPPKKRM-DKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTT 60
          MG+RKS+ KPPPKK+M   L+T F+CPFCNH  S + ++D     G  SC +C E F T 
Sbjct: 1  MGRRKSKRKPPPKKKMTGTLETQFTCPFCNHEKSCDVKMDRARNTGVISCTVCLEEFQTP 60

Query: 61 ITALSEAIDIYSEWIDECERVN 82
          IT LSE +D+YS+WID CE  N
Sbjct: 61 ITYLSEPVDVYSDWIDACEAAN 82

[Close]

BLAST of Lsi05G001270 vs. ExPASy TrEMBL
Match: A0A0A0LAG5 (Transcription elongation factor 1 homolog OS=Cucumis sativus OX=3659 GN=Csa_3G236590 PE=3 SV=1)

HSP 1 Score: 182.6 bits (462), Expect = 7.3e-43
Identity = 87/88 (98.86%), Postives = 87/88 (98.86%), Query Frame = 0


Query: 1  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTI 60
          MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTI
Sbjct: 1  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTI 60

Query: 61 TALSEAIDIYSEWIDECERVNTLEDDAA 89
          TALSEAIDIYSEWIDECERVN LEDDAA
Sbjct: 61 TALSEAIDIYSEWIDECERVNNLEDDAA 88

[Close]

BLAST of Lsi05G001270 vs. ExPASy TrEMBL
Match: A0A1S3C2B7 (Transcription elongation factor 1 homolog OS=Cucumis melo OX=3656 GN=LOC103496063 PE=3 SV=1)

HSP 1 Score: 182.6 bits (462), Expect = 7.3e-43
Identity = 87/88 (98.86%), Postives = 87/88 (98.86%), Query Frame = 0


Query: 1  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTI 60
          MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTI
Sbjct: 1  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTI 60

Query: 61 TALSEAIDIYSEWIDECERVNTLEDDAA 89
          TALSEAIDIYSEWIDECERVN LEDDAA
Sbjct: 61 TALSEAIDIYSEWIDECERVNNLEDDAA 88

[Close]

BLAST of Lsi05G001270 vs. ExPASy TrEMBL
Match: A0A6P4AU33 (Transcription elongation factor 1 homolog OS=Ziziphus jujuba OX=326968 GN=LOC107432510 PE=3 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 6.2e-42
Identity = 85/88 (96.59%), Postives = 86/88 (97.73%), Query Frame = 0


Query: 1  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTI 60
          MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEA CRICQESFSTTI
Sbjct: 1  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEAVCRICQESFSTTI 60

Query: 61 TALSEAIDIYSEWIDECERVNTLEDDAA 89
          TAL+EAIDIYSEWIDECERVNTLEDD A
Sbjct: 61 TALTEAIDIYSEWIDECERVNTLEDDGA 88

[Close]

BLAST of Lsi05G001270 vs. ExPASy TrEMBL
Match: W9R774 (Transcription elongation factor 1 homolog OS=Morus notabilis OX=981085 GN=L484_011426 PE=3 SV=1)

HSP 1 Score: 177.9 bits (450), Expect = 1.8e-41
Identity = 84/88 (95.45%), Postives = 85/88 (96.59%), Query Frame = 0


Query: 1  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTI 60
          MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTI
Sbjct: 1  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTI 60

Query: 61 TALSEAIDIYSEWIDECERVNTLEDDAA 89
          TAL+E IDIYSEWIDECERVN LEDD A
Sbjct: 61 TALTEPIDIYSEWIDECERVNNLEDDGA 88

[Close]

BLAST of Lsi05G001270 vs. ExPASy TrEMBL
Match: A0A2P5DXC0 (Transcription elongation factor 1 homolog OS=Parasponia andersonii OX=3476 GN=PanWU01x14_022910 PE=3 SV=1)

HSP 1 Score: 176.4 bits (446), Expect = 5.2e-41
Identity = 82/88 (93.18%), Postives = 86/88 (97.73%), Query Frame = 0


Query: 1  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTI 60
          MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEA+CRICQESFSTT+
Sbjct: 1  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEAACRICQESFSTTV 60

Query: 61 TALSEAIDIYSEWIDECERVNTLEDDAA 89
          TAL+E IDIYSEWIDECERVN LE+DAA
Sbjct: 61 TALTEPIDIYSEWIDECERVNNLEEDAA 88

[Close]

BLAST of Lsi05G001270 vs. NCBI nr
Match: XP_004146241.1 (transcription elongation factor 1 homolog [Cucumis sativus] >XP_008456008.1 PREDICTED: transcription elongation factor 1 homolog [Cucumis melo] >KGN57642.1 hypothetical protein Csa_011748 [Cucumis sativus])

HSP 1 Score: 182.6 bits (462), Expect = 1.5e-42
Identity = 87/88 (98.86%), Postives = 87/88 (98.86%), Query Frame = 0


Query: 1  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTI 60
          MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTI
Sbjct: 1  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTI 60

Query: 61 TALSEAIDIYSEWIDECERVNTLEDDAA 89
          TALSEAIDIYSEWIDECERVN LEDDAA
Sbjct: 61 TALSEAIDIYSEWIDECERVNNLEDDAA 88

[Close]

BLAST of Lsi05G001270 vs. NCBI nr
Match: XP_038896920.1 (transcription elongation factor 1 homolog [Benincasa hispida])

HSP 1 Score: 181.0 bits (458), Expect = 4.4e-42
Identity = 85/88 (96.59%), Postives = 87/88 (98.86%), Query Frame = 0


Query: 1   MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTI 60
           MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRID+KNLIGEASCRICQESFSTTI
Sbjct: 39  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDLKNLIGEASCRICQESFSTTI 98

Query: 61  TALSEAIDIYSEWIDECERVNTLEDDAA 89
           TALSEAID+YSEWIDECERVN LEDDAA
Sbjct: 99  TALSEAIDVYSEWIDECERVNNLEDDAA 126

[Close]

BLAST of Lsi05G001270 vs. NCBI nr
Match: XP_015899142.1 (transcription elongation factor 1 homolog [Ziziphus jujuba] >XP_015899143.1 transcription elongation factor 1 homolog [Ziziphus jujuba])

HSP 1 Score: 179.5 bits (454), Expect = 1.3e-41
Identity = 85/88 (96.59%), Postives = 86/88 (97.73%), Query Frame = 0


Query: 1  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTI 60
          MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEA CRICQESFSTTI
Sbjct: 1  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEAVCRICQESFSTTI 60

Query: 61 TALSEAIDIYSEWIDECERVNTLEDDAA 89
          TAL+EAIDIYSEWIDECERVNTLEDD A
Sbjct: 61 TALTEAIDIYSEWIDECERVNTLEDDGA 88

[Close]

BLAST of Lsi05G001270 vs. NCBI nr
Match: XP_010090451.1 (transcription elongation factor 1 homolog isoform X1 [Morus notabilis] >EXB39509.1 hypothetical protein L484_011426 [Morus notabilis])

HSP 1 Score: 177.9 bits (450), Expect = 3.7e-41
Identity = 84/88 (95.45%), Postives = 85/88 (96.59%), Query Frame = 0


Query: 1  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTI 60
          MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTI
Sbjct: 1  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTI 60

Query: 61 TALSEAIDIYSEWIDECERVNTLEDDAA 89
          TAL+E IDIYSEWIDECERVN LEDD A
Sbjct: 61 TALTEPIDIYSEWIDECERVNNLEDDGA 88

[Close]

BLAST of Lsi05G001270 vs. NCBI nr
Match: KAF7803378.1 (transcription elongation factor 1-like protein [Senna tora])

HSP 1 Score: 177.2 bits (448), Expect = 6.3e-41
Identity = 84/88 (95.45%), Postives = 84/88 (95.45%), Query Frame = 0


Query: 1  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTI 60
          MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTI
Sbjct: 1  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTI 60

Query: 61 TALSEAIDIYSEWIDECERVNTLEDDAA 89
           ALSE IDIYSEWIDECERVN LEDD A
Sbjct: 61 NALSEPIDIYSEWIDECERVNNLEDDGA 88

[Close]

BLAST of Lsi05G001270 vs. TAIR 10
Match: AT5G46030.1 (unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF701, zinc-binding putative (InterPro:IPR007808); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 161.8 bits (408), Expect = 2.6e-40
Identity = 75/86 (87.21%), Postives = 82/86 (95.35%), Query Frame = 0


Query: 1  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTI 60
          MGKRKSRAKP P KRMDKLDT+FSCPFCNHG+SVEC IDMK+LIG+A+CRIC+ESFSTTI
Sbjct: 1  MGKRKSRAKPAPTKRMDKLDTIFSCPFCNHGSSVECIIDMKHLIGKAACRICEESFSTTI 60

Query: 61 TALSEAIDIYSEWIDECERVNTLEDD 87
          TAL+EAIDIYSEWIDECERVNT EDD
Sbjct: 61 TALTEAIDIYSEWIDECERVNTAEDD 86

The following BLAST results are available for this feature:

BLAST of Lsi05G001270 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8LHP0	6.6e-41	89.53	Transcription elongation factor 1 homolog OS=Oryza sativa subsp. japonica OX=399...	[more]
Q8LEF3	3.6e-39	87.21	Transcription elongation factor 1 homolog OS=Arabidopsis thaliana OX=3702 GN=At5...	[more]
P36053	3.7e-20	52.44	Transcription elongation factor 1 OS=Saccharomyces cerevisiae (strain ATCC 20450...	[more]
A4IFR3	6.4e-20	53.66	Transcription elongation factor 1 homolog OS=Bos taurus OX=9913 GN=ELOF1 PE=3 SV...	[more]
P60002	6.4e-20	53.66	Transcription elongation factor 1 homolog OS=Homo sapiens OX=9606 GN=ELOF1 PE=1 ...	[more]

BLAST of Lsi05G001270 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LAG5	7.3e-43	98.86	Transcription elongation factor 1 homolog OS=Cucumis sativus OX=3659 GN=Csa_3G23...	[more]
A0A1S3C2B7	7.3e-43	98.86	Transcription elongation factor 1 homolog OS=Cucumis melo OX=3656 GN=LOC10349606...	[more]
A0A6P4AU33	6.2e-42	96.59	Transcription elongation factor 1 homolog OS=Ziziphus jujuba OX=326968 GN=LOC107...	[more]
W9R774	1.8e-41	95.45	Transcription elongation factor 1 homolog OS=Morus notabilis OX=981085 GN=L484_0...	[more]
A0A2P5DXC0	5.2e-41	93.18	Transcription elongation factor 1 homolog OS=Parasponia andersonii OX=3476 GN=Pa...	[more]

BLAST of Lsi05G001270 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004146241.1	1.5e-42	98.86	transcription elongation factor 1 homolog [Cucumis sativus] >XP_008456008.1 PRED...	[more]
XP_038896920.1	4.4e-42	96.59	transcription elongation factor 1 homolog [Benincasa hispida]	[more]
XP_015899142.1	1.3e-41	96.59	transcription elongation factor 1 homolog [Ziziphus jujuba] >XP_015899143.1 tran...	[more]
XP_010090451.1	3.7e-41	95.45	transcription elongation factor 1 homolog isoform X1 [Morus notabilis] >EXB39509...	[more]
KAF7803378.1	6.3e-41	95.45	transcription elongation factor 1-like protein [Senna tora]	[more]

BLAST of Lsi05G001270 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G46030.1	2.6e-40	87.21	unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF701,...	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR038567	Transcription elongation factor 1 superfamily	GENE3D	2.20.25.190		coord: 16..82 e-value: 1.5E-29 score: 104.0
IPR007808	Transcription elongation factor 1	PFAM	PF05129	Elf1	coord: 2..78 e-value: 4.3E-31 score: 106.8
IPR007808	Transcription elongation factor 1	PANTHER	PTHR20934	UNCHARACTERIZED	coord: 1..88
None	No IPR available	SUPERFAMILY	57783	Zinc beta-ribbon	coord: 1..81

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi05G001270.1	Lsi05G001270.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006368	transcription elongation from RNA polymerase II promoter
biological_process	GO:0006414	translational elongation
cellular_component	GO:0008023	transcription elongation factor complex
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0000993	RNA polymerase II complex binding
molecular_function	GO:0003746	translation elongation factor activity