Lsi05G001070 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi05G001070
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
DescriptionUnknown protein
Locationchr05: 1816879 .. 1817999 (+)
RNA-Seq ExpressionLsi05G001070
SyntenyLsi05G001070
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGGTTGCTTTGAAATCAATCAAAGAGGGTGGCCATCGGACCCATTTCAAATCCCGCATTGCCTAGTTCGGATTCCGAGGGCCGATCTTCAACTTTAGGATTATAAAATGCTCGTGGTAATTGGGATTCTTGGGGGGGTTTCATATTAAATTTTAGTTCTCATTATATCGATTTGTGTGCTATTTCTTATGCTGATTTCTGCTTTACAGGTCGAACCCAAGGAAGAAATTCAAGCAGTCAATTTCCTCTGGACCCACCGAGGGCTTCTTGACTGAGTTGCTCCATCATTTTGTCTATGAACTGAAAGTGATACAATTCATTGCTTCTCTATAATACTATGCATAAGAAGATGCTCCAAGCTGCTTGTACTTTGGCTCAATCTCTGAAAGGTATTTGATATCATTTTTTTTCTTTTACTGAAGAAAGAGGAGTTGTTTTTACGGTTTTTAGCTATGAATTAGGAAATGGGTTTTGGTGGTTACTTTGATTTGGGTTATTATTGTTTCTCCTTTGTTGATTGTGTTTACTGCTGCTACTGTGCATTGCTAGCAACCCTTTTGTTTTTCTGTTTCAAAAGGTAAGAAGTAAAAGACATAATCATCTTGTGAGAACTGAAAGTAACTTGCAGATGCAGCCTTTTGGAATAGTTCTCATTATGCCTTGAAAAGGAACAATATATGGTGCAGTTCTATCCTGGCAGACCACTGTGGAAAAGAATAGTATTATAGAGGACTTTTTTTATGCATAAAAGTTGCCTTTTCTCTCTTCAGTTTACATTTAGTAGTCACTAATAGCCAGAAAACCTTGTGTTTGCTTTATCAGCGAGTCCTGACCTGTGATAAAGAAAATTGGAGGAGATTGGGTTGGGGGAGATGGAAAAGAGGAAAAGCAAGTGGGGTTGATTGCAGTCTGTCTTTTCCCTGAAAACCAGGGACAATTCTCTTTTATTCTTTTTCTTTTTTTCCTTTTTATGACTTGTATTTTGTTGTAGTTTGGCTTCTACATGCTCTTCAGACTCAGGCACATGTAAAAGCAACCCTGCTTTTGGCATTTCATGGTTTGGTTGATAACCTTATAGCCTTGATCCATCTTGCATATTACAATTTTATGATTTTGTGA

mRNA sequence

ATGAGGTCGAACCCAAGGAAGAAATTCAAGCAGTCAATTTCCTCTGGACCCACCGAGGGCTTCTTGACTGAGTTGCTCCATCATTTTGTCTATGAACTGAAAGAAATGGGTTTTGGTGGTTACTTTGATTTGGGTTATTATTGTTTCTCCTTTGTTGATTGTGTTTACTGCTGCTACTGTGCATTGCTAGCAACCCTTTTGTTTTTCTGTTTCAAAAGTTTACATTTAGTAGTCACTAATAGCCAGAAAACCTTGTGTTTGCTTTATCAGCGAGTCCTGACCTGTGATAAAGAAAATTGGAGGAGATTGGGTTGGGGGAGATGGAAAAGAGGAAAAGCAATTTGGCTTCTACATGCTCTTCAGACTCAGGCACATGTAAAAGCAACCCTGCTTTTGGCATTTCATGGTTTGGTTGATAACCTTATAGCCTTGATCCATCTTGCATATTACAATTTTATGATTTTGTGA

Coding sequence (CDS)

ATGAGGTCGAACCCAAGGAAGAAATTCAAGCAGTCAATTTCCTCTGGACCCACCGAGGGCTTCTTGACTGAGTTGCTCCATCATTTTGTCTATGAACTGAAAGAAATGGGTTTTGGTGGTTACTTTGATTTGGGTTATTATTGTTTCTCCTTTGTTGATTGTGTTTACTGCTGCTACTGTGCATTGCTAGCAACCCTTTTGTTTTTCTGTTTCAAAAGTTTACATTTAGTAGTCACTAATAGCCAGAAAACCTTGTGTTTGCTTTATCAGCGAGTCCTGACCTGTGATAAAGAAAATTGGAGGAGATTGGGTTGGGGGAGATGGAAAAGAGGAAAAGCAATTTGGCTTCTACATGCTCTTCAGACTCAGGCACATGTAAAAGCAACCCTGCTTTTGGCATTTCATGGTTTGGTTGATAACCTTATAGCCTTGATCCATCTTGCATATTACAATTTTATGATTTTGTGA

Protein sequence

MRSNPRKKFKQSISSGPTEGFLTELLHHFVYELKEMGFGGYFDLGYYCFSFVDCVYCCYCALLATLLFFCFKSLHLVVTNSQKTLCLLYQRVLTCDKENWRRLGWGRWKRGKAIWLLHALQTQAHVKATLLLAFHGLVDNLIALIHLAYYNFMIL
Homology
[Close]
BLAST of Lsi05G001070 vs. ExPASy TrEMBL
Match: A0A0A0L7A5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G239270 PE=4 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 2.9e-18
Identity = 74/163 (45.40%), Postives = 88/163 (53.99%), Query Frame = 0 

Query: 6   RKKFKQSISSGPTEGFLTELLHHFVYELKEMGFGGYFD-------------LGYYCFSFV 65
           +KK KQSISSGPT+GFLTELLH+FVYELK + F   ++             +G +   FV
Sbjct: 64  KKKLKQSISSGPTKGFLTELLHYFVYELKMIQFIALYEQEDAPTSQRKWVLVGIFDLGFV 123

Query: 66  DCVYCCYCALLATLLFFCFKSLHLVVTNSQKTLCLLYQRVLTCDKENWRRLGWGRWKRGK 125
             VYCC+CALLATLLF                         +  KE     G G   +G+
Sbjct: 124 -IVYCCHCALLATLLF-------------------------SASKEKIGGDGVGGDGKGE 183

Query: 126 AIWLLHALQTQAHVKATLLLAFHGLVDNLIALIHLAYYNFMIL 156
                   QTQAHVKA ++L FHGLVD LIA IHLAYYN  IL
Sbjct: 184 R-------QTQAHVKAAMVLEFHGLVDKLIAFIHLAYYNSTIL 193

[Close]
BLAST of Lsi05G001070 vs. NCBI nr
Match: KGN57663.1 (hypothetical protein Csa_011496 [Cucumis sativus])

HSP 1 Score: 101.7 bits (252), Expect = 5.9e-18
Identity = 74/163 (45.40%), Postives = 88/163 (53.99%), Query Frame = 0 

Query: 6   RKKFKQSISSGPTEGFLTELLHHFVYELKEMGFGGYFD-------------LGYYCFSFV 65
           +KK KQSISSGPT+GFLTELLH+FVYELK + F   ++             +G +   FV
Sbjct: 64  KKKLKQSISSGPTKGFLTELLHYFVYELKMIQFIALYEQEDAPTSQRKWVLVGIFDLGFV 123

Query: 66  DCVYCCYCALLATLLFFCFKSLHLVVTNSQKTLCLLYQRVLTCDKENWRRLGWGRWKRGK 125
             VYCC+CALLATLLF                         +  KE     G G   +G+
Sbjct: 124 -IVYCCHCALLATLLF-------------------------SASKEKIGGDGVGGDGKGE 183

Query: 126 AIWLLHALQTQAHVKATLLLAFHGLVDNLIALIHLAYYNFMIL 156
                   QTQAHVKA ++L FHGLVD LIA IHLAYYN  IL
Sbjct: 184 R-------QTQAHVKAAMVLEFHGLVDKLIAFIHLAYYNSTIL 193

The following BLAST results are available for this feature:
BLAST of Lsi05G001070 vs.
Match NameE-valueIdentityDescription
BLAST of Lsi05G001070 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L7A52.9e-1845.40Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G239270 PE=4 SV=1[more]
BLAST of Lsi05G001070 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN57663.15.9e-1845.40hypothetical protein Csa_011496 [Cucumis sativus][more]
BLAST of Lsi05G001070 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi05G001070.1Lsi05G001070.1mRNA