Lsi05G000800 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi05G000800
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	RNA polymerase sigma factor sigE
Location	chr05: 1525602 .. 1529669 (+)
RNA-Seq Expression	Lsi05G000800
Synteny	Lsi05G000800

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTTCCTTTGCCTACTGTTGCTGCTTTCTTCACCGTTGATTCATAGCAACCCCCCCCCCCCATCACCCCTCCATTTCTGGCAATTATAAACTCAGATTGTTTGTGGACACCAAAATTCATGTATTTAGGAGACTGTCATTTTAAGCTTTTTCTCTCTGATCCTGGGAAACCAGAAGGAAAAACTGAAGCAAAAAGGAAAAAAAATATATAAAAACTTTGCTTTACCTTGATCTTTGAAGGTTTGTGTTTCTCTACTTAGTTTTCTTTTTCTGTTTTTGTTTTTTAAATTTTGGATGAAGCTGTTATTGAATCTTCTGGTTGTTTTAATGGAGAAATTCTAGAGAATCTTGCCTTTTGTGGGAAGATCAGATAGCTCCTTGAACATGGGCTTTTAGGTGTAAATGGTTGGATTATTGTGTGTTTATGAACATTGTCTTTCAGATTAGGATTCCCCACAACAAACCCATATGAATAAACAACTAAAGTTTCAAGCTTTGTAATCCCAGTTTGTTCAAACAGTAAAGAAGATGAAGTTAGGGGTTTTAAGGAAAATGGTGTTAGCTATGTACTAAACTAGAAAAGTGGTATTTATTTGAGCTGTGATGTCTATTAGTTAAATGCACCAAAATGGATGCTAATGACTTGTTTGGTGAATCATCCCCAAGGGGAAATTTAGTGCTTTCTCTTGTGAAGACTTTTGGCCAATGCATTGTTTCAAGCCTAGGATTTGAATGATTAGAGTTTCATTTACCATTTTATTGCAGGCTGCTGGAGCTTCTATATTGATTTCTTTTTCTGTTTTGAAGGCTACTTGGTATGGGAGTTGTGACTGTTTCAAGCTCGGCAGCACGAACTCCTCTTCGGCTGGGTGCAAAATTTTCTAATCACAATTCTACATTGAAAAGACCATCGATTGTCGCTTTTAAAGCGGATAAGCACACAAACACAAGTTTGGTCTTGCCTCACGAGCAAGTAACCCTGCCTGTGGAGAGTAATAACAGAAACAAGAAAAGATCAGGAAAAACTAGCAAACCTTTGAAGAGAGTTAAAGCTGTCTTTATCGATGAAGCTACTCCATGTACTTTGGATGTGGATTACAATGAGGCTGCTGCTAAACTTGAAAACATATTCAAGCTTAGCCCTGTGACTGACGAGGATACTGATATGGAAAGTAAAGATGGCAGATCAAAAAGAGGACAACAAAGGAGGAAAAAACCAGACAAGAGACCAAGTGATGGCATAGTCAGGAACCAGACTAAGAGGATTAAGCGACTAGATCTCGATAAGAGGATAGCATTGAAAAGTAACAAGGAAGGTAAGGCAGCTCCTTCATTAAGGAAACAAAAAGATACCAAAAATGAAGATGATGAGATTGATGGTCTTGTAAGAGACTACTCTGCTTCAACTGATTTGGTTAGTTTAGACTGGAAAAAAATGAAGATTCCTCCCGTTCTTCCTTCATCAGAGCATACTCGTTTGTTCAAGTTGGTTCAACCAATGAAGGTGAGGCTTAAGAATTCTGATGCTGGAAACTGATTTGATTGGAAGTTTCATTCTTGTTCACTGCCAATTAACGTTTTCCTCTATTAGGCACTTATTCAAGTACAAGAAGAGCTGCAGAAAGAGTTCGGAAGAGAACCAACTGAAGGAGAATTGGCTAATGCGACAAATATGAATGTAATTCAAGTAAGGAGACAATTGGAGGTTGGTCGTGCTGCCAGAAACAAGCTCATCAAGGTAAGAGTCACTTCCTTCCACAATTAAGGCATCATTGCTTCAGGCTTCTATGATACCATGACAGCCTTCAAATGGCATACAAGGATATGTTCAATGCCTTTTCTTCCCCACGAAAATAATTAAATTTCAGCTCTCATCCACCACCCATGGAATTTATCAGAAACCTACAAGTTTTTTATGATTGATATGTTTGCCATATTCCATACAATCACTACCTAGGATAACGTATAGGAGTGAAAGTGCAAATAGACTGAATATAGTTGTAATCAACTTAAGATATAGGTGCATTGTCTACTGCAAAAAGGATGGAACTAATGGTTAGATTTTACATCTGTTGCAGCACAATCTCCGCCTTGTATTATTTGTAATCAACAAATACTTTGAAGATTTTGCAAGTGGCCCAAAATTTCAAGACCTTTGTCAAGCAGGAGTCAAGGGACTCATTACAGCGATTGATCGCTTTGAGCCAAAGAGGAAATTCCGGCTATCGACTTATGCTTTATTTTGGATAAGGCATGCTATTATTCGGTCAATGACTCTGTCAAGCTTCACACGCGTCTCATTTGGACTTGACTCGGTTAGTTCTTAGTCTACTTGGCTTTATCATTCCTTAATTTTTTTTTTTTTTTTTTTTTTTATCACGGCAATGGATTACTTCCATTCCTTAATCACCATCCTACTTTCCTTCATGACATCATATTATTGTTGCTATACTTAAAACAACCAAAGAAGTTGTAACCTTAAATAGAGAAGAAACAAAGAGAAATAGGGTAAGGGAATATTTAAACTTTAAAATGTCATATTGAGAGTTTGATCTTGACATCTCTACAAAATAATTACATAAGAAAAAAGAATAAGTTGCCAAGGAAATCTCGAGGGTCTAGACTCCCTCCATCTAGTTTTAGTTCAAAGAAAAAAAGTATGACTTAAAATTTAGAAGCTCTGCATTTCAACTAACTGAAATCGCAATAAAATTCATGCTAGAGTAGCTAGAAATTTTAGGAAGCAAGCTTTACGAATTACGATAAATCATCTAGCTCAGACTGCAAGAGGTTTTTCCAGGTTCATGTTGGCATCAATTAAAAAGTTGAAATGGATCTGTTCACTTTGTTATGTTTTGAATAAAAAATGTCGTCTAAATGGTTCTTGGTGCACATGATGGCATGGATTATTGAGATTGGACCTTTTCTTAGTGCAGGTAAGAGTTGAAATTCAAAGAGCTAAACTTGAGTTATTATGTGAGCTTCATAGATTACCAACAGAGGAAGAGGTAATTGCAAAAGTTGGCATCTCACCTGAGAGATACCTAGAAGTAACGAGGGCTACAAAACCAGTTTACTCTCTCCATTCTAGGCATTCAACTACATCAGAAGAGTTTATCAATGGGATCACTGATGTAGAAGGTACCGGAGGCGACAACCGGAGGCAACCAGCTCTTCTAAGGCTTGCTTTGGATGATGTGGTAATTTCTCCGTACAAATCTTGTTGACACATTCCTTTTCGCCCTCTAAACCACGATGTTCATCATCTTAAAAGAATTCTTGGCTTTTGAACATAGCCTGAGATGTTTTCTTCTATATTTCTGGAGAAATATATGTCATCCTTGTTTCCATGATTTAACTTGTGAAATATATCTGGTAAATGTCTTCTCATCATGAATTCAAGGTGAAAGACATCTTAGCAGAATGGTATACATCTTTTCTGTTTGTTTGAGATTCAACCAATTTGTACTGCACTACCCTTATGTGTCCCTACCTAATCAACGTAAAAGTAGTCTGTTATACTGACATGGACAGCTTTTTGGTAGATTTCATAGGCATTCCTGACTTGGGATTACTTTTAACTTAAATTGTTCATCATATCAGCAGATAGGAGCCGTTTTTCTTGAAATGCCCTACATTGCTGTTATTTATAATTATTAATAATACTTTCCTAAAAACTTTTCCAGCTTGATTCTCTTAAGCCAAAGGAGAGCTTGGTGATCAGACAGAGATACGGTCTCGATGGCAAAGGAAACCGAACATTAGGTGAGATAGCTGGAAATCTAAATATTTCAAGGGAAATGGTTCGAAAGCATGAAGTGAAAGCTCTCATGAAGCTCAAGCATCCTGCAAGAGTGGATTACCTTCGTCGGTATTTAATCTGAACTGATGAAAACATCATGCTTTGTTTCAATGATCTTGTACTCTGGATAGGTCTTATCGCCAAAACATCTCAAGGGGCAAGAGAATTGTACCATATATTTGTAACTACTTGAACATAGAAACCTCACACCATATGCTTCATATTTTGAAGGACATAACATTGGCAGCTCTGCTACTTTCTTTGTAG

mRNA sequence

CTTTCCTTTGCCTACTGTTGCTGCTTTCTTCACCGTTGATTCATAGCAACCCCCCCCCCCCATCACCCCTCCATTTCTGGCAATTATAAACTCAGATTGTTTGTGGACACCAAAATTCATGTATTTAGGAGACTGTCATTTTAAGCTTTTTCTCTCTGATCCTGGGAAACCAGAAGGAAAAACTGAAGCAAAAAGGAAAAAAAATATATAAAAACTTTGCTTTACCTTGATCTTTGAAGGCTACTTGGTATGGGAGTTGTGACTGTTTCAAGCTCGGCAGCACGAACTCCTCTTCGGCTGGGTGCAAAATTTTCTAATCACAATTCTACATTGAAAAGACCATCGATTGTCGCTTTTAAAGCGGATAAGCACACAAACACAAGTTTGGTCTTGCCTCACGAGCAAGTAACCCTGCCTGTGGAGAGTAATAACAGAAACAAGAAAAGATCAGGAAAAACTAGCAAACCTTTGAAGAGAGTTAAAGCTGTCTTTATCGATGAAGCTACTCCATGTACTTTGGATGTGGATTACAATGAGGCTGCTGCTAAACTTGAAAACATATTCAAGCTTAGCCCTGTGACTGACGAGGATACTGATATGGAAAGTAAAGATGGCAGATCAAAAAGAGGACAACAAAGGAGGAAAAAACCAGACAAGAGACCAAGTGATGGCATAGTCAGGAACCAGACTAAGAGGATTAAGCGACTAGATCTCGATAAGAGGATAGCATTGAAAAGTAACAAGGAAGGTAAGGCAGCTCCTTCATTAAGGAAACAAAAAGATACCAAAAATGAAGATGATGAGATTGATGGTCTTGTAAGAGACTACTCTGCTTCAACTGATTTGGTTAGTTTAGACTGGAAAAAAATGAAGATTCCTCCCGTTCTTCCTTCATCAGAGCATACTCGTTTGTTCAAGTTGGTTCAACCAATGAAGGCACTTATTCAAGTACAAGAAGAGCTGCAGAAAGAGTTCGGAAGAGAACCAACTGAAGGAGAATTGGCTAATGCGACAAATATGAATGTAATTCAAGTAAGGAGACAATTGGAGGTTGGTCGTGCTGCCAGAAACAAGCTCATCAAGCACAATCTCCGCCTTGTATTATTTGTAATCAACAAATACTTTGAAGATTTTGCAAGTGGCCCAAAATTTCAAGACCTTTGTCAAGCAGGAGTCAAGGGACTCATTACAGCGATTGATCGCTTTGAGCCAAAGAGGAAATTCCGGCTATCGACTTATGCTTTATTTTGGATAAGGCATGCTATTATTCGGTCAATGACTCTGTCAAGCTTCACACGCGTCTCATTTGGACTTGACTCGGTAAGAGTTGAAATTCAAAGAGCTAAACTTGAGTTATTATGTGAGCTTCATAGATTACCAACAGAGGAAGAGGTAATTGCAAAAGTTGGCATCTCACCTGAGAGATACCTAGAAGTAACGAGGGCTACAAAACCAGTTTACTCTCTCCATTCTAGGCATTCAACTACATCAGAAGAGTTTATCAATGGGATCACTGATGTAGAAGGTACCGGAGGCGACAACCGGAGGCAACCAGCTCTTCTAAGGCTTGCTTTGGATGATGTGCTTGATTCTCTTAAGCCAAAGGAGAGCTTGGTGATCAGACAGAGATACGGTCTCGATGGCAAAGGAAACCGAACATTAGGTGAGATAGCTGGAAATCTAAATATTTCAAGGGAAATGGTTCGAAAGCATGAAGTGAAAGCTCTCATGAAGCTCAAGCATCCTGCAAGAGTGGATTACCTTCGTCGGTCTTATCGCCAAAACATCTCAAGGGGCAAGAGAATTGTACCATATATTTGTAACTACTTGAACATAGAAACCTCACACCATATGCTTCATATTTTGAAGGACATAACATTGGCAGCTCTGCTACTTTCTTTGTAG

Coding sequence (CDS)

ATGGGAGTTGTGACTGTTTCAAGCTCGGCAGCACGAACTCCTCTTCGGCTGGGTGCAAAATTTTCTAATCACAATTCTACATTGAAAAGACCATCGATTGTCGCTTTTAAAGCGGATAAGCACACAAACACAAGTTTGGTCTTGCCTCACGAGCAAGTAACCCTGCCTGTGGAGAGTAATAACAGAAACAAGAAAAGATCAGGAAAAACTAGCAAACCTTTGAAGAGAGTTAAAGCTGTCTTTATCGATGAAGCTACTCCATGTACTTTGGATGTGGATTACAATGAGGCTGCTGCTAAACTTGAAAACATATTCAAGCTTAGCCCTGTGACTGACGAGGATACTGATATGGAAAGTAAAGATGGCAGATCAAAAAGAGGACAACAAAGGAGGAAAAAACCAGACAAGAGACCAAGTGATGGCATAGTCAGGAACCAGACTAAGAGGATTAAGCGACTAGATCTCGATAAGAGGATAGCATTGAAAAGTAACAAGGAAGGTAAGGCAGCTCCTTCATTAAGGAAACAAAAAGATACCAAAAATGAAGATGATGAGATTGATGGTCTTGTAAGAGACTACTCTGCTTCAACTGATTTGGTTAGTTTAGACTGGAAAAAAATGAAGATTCCTCCCGTTCTTCCTTCATCAGAGCATACTCGTTTGTTCAAGTTGGTTCAACCAATGAAGGCACTTATTCAAGTACAAGAAGAGCTGCAGAAAGAGTTCGGAAGAGAACCAACTGAAGGAGAATTGGCTAATGCGACAAATATGAATGTAATTCAAGTAAGGAGACAATTGGAGGTTGGTCGTGCTGCCAGAAACAAGCTCATCAAGCACAATCTCCGCCTTGTATTATTTGTAATCAACAAATACTTTGAAGATTTTGCAAGTGGCCCAAAATTTCAAGACCTTTGTCAAGCAGGAGTCAAGGGACTCATTACAGCGATTGATCGCTTTGAGCCAAAGAGGAAATTCCGGCTATCGACTTATGCTTTATTTTGGATAAGGCATGCTATTATTCGGTCAATGACTCTGTCAAGCTTCACACGCGTCTCATTTGGACTTGACTCGGTAAGAGTTGAAATTCAAAGAGCTAAACTTGAGTTATTATGTGAGCTTCATAGATTACCAACAGAGGAAGAGGTAATTGCAAAAGTTGGCATCTCACCTGAGAGATACCTAGAAGTAACGAGGGCTACAAAACCAGTTTACTCTCTCCATTCTAGGCATTCAACTACATCAGAAGAGTTTATCAATGGGATCACTGATGTAGAAGGTACCGGAGGCGACAACCGGAGGCAACCAGCTCTTCTAAGGCTTGCTTTGGATGATGTGCTTGATTCTCTTAAGCCAAAGGAGAGCTTGGTGATCAGACAGAGATACGGTCTCGATGGCAAAGGAAACCGAACATTAGGTGAGATAGCTGGAAATCTAAATATTTCAAGGGAAATGGTTCGAAAGCATGAAGTGAAAGCTCTCATGAAGCTCAAGCATCCTGCAAGAGTGGATTACCTTCGTCGGTCTTATCGCCAAAACATCTCAAGGGGCAAGAGAATTGTACCATATATTTGTAACTACTTGAACATAGAAACCTCACACCATATGCTTCATATTTTGAAGGACATAACATTGGCAGCTCTGCTACTTTCTTTGTAG

Protein sequence

MGVVTVSSSAARTPLRLGAKFSNHNSTLKRPSIVAFKADKHTNTSLVLPHEQVTLPVESNNRNKKRSGKTSKPLKRVKAVFIDEATPCTLDVDYNEAAAKLENIFKLSPVTDEDTDMESKDGRSKRGQQRRKKPDKRPSDGIVRNQTKRIKRLDLDKRIALKSNKEGKAAPSLRKQKDTKNEDDEIDGLVRDYSASTDLVSLDWKKMKIPPVLPSSEHTRLFKLVQPMKALIQVQEELQKEFGREPTEGELANATNMNVIQVRRQLEVGRAARNKLIKHNLRLVLFVINKYFEDFASGPKFQDLCQAGVKGLITAIDRFEPKRKFRLSTYALFWIRHAIIRSMTLSSFTRVSFGLDSVRVEIQRAKLELLCELHRLPTEEEVIAKVGISPERYLEVTRATKPVYSLHSRHSTTSEEFINGITDVEGTGGDNRRQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNISREMVRKHEVKALMKLKHPARVDYLRRSYRQNISRGKRIVPYICNYLNIETSHHMLHILKDITLAALLLSL

Homology

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BLAST of Lsi05G000800 vs. ExPASy Swiss-Prot
Match: Q9ZNX9 (RNA polymerase sigma factor sigE, chloroplastic/mitochondrial OS=Arabidopsis thaliana OX=3702 GN=SIGE PE=1 SV=1)

HSP 1 Score: 617.1 bits (1590), Expect = 2.0e-175
Identity = 335/515 (65.05%), Postives = 406/515 (78.83%), Query Frame = 0


Query: 1   MGVVTVSSSAARTPLRLGAKFSNHNSTLKRPSIVAFKADKHTNTSLVL-PHEQVTLPVES 60
           MGVV++SSSAAR+PL LG     H S+LK+PSIVAFKAD  +N++L++ P EQV +P E 
Sbjct: 1   MGVVSISSSAARSPLGLGNDLLTHRSSLKKPSIVAFKADDSSNSALIIPPREQVLIPAEK 60

Query: 61  NNRNKKRSGKTSKPLKRVK---AVFIDEATPCTLDVDYNEAAAKLENIFKLSPVTDE--D 120
           +N  KKR     KP K  K   ++  + A  C+L VDYNEAAA+LE+I+KLSP T    +
Sbjct: 61  HN-EKKREVTRRKPCKTPKKPLSLEHNSAPSCSLGVDYNEAAARLESIYKLSPATTTLVE 120

Query: 121 TDMESKDGRSKRGQQRRKKPDKRPSDGIVRNQTKRIKRLDLDKRIALKSNKEGKAAPSLR 180
            D+E    ++K  ++R++K        +VRN  K+ KR+ LDKRIALK N + K   +  
Sbjct: 121 DDVEDGGSKAKVSRRRKRKESGEEKKVVVRNNVKKEKRMSLDKRIALKRNVQEKPVVASV 180

Query: 181 KQKDTK--NEDDEIDGLVRDYSASTDLVSLDWKKMKIPPVLPSSEHTRLFKLVQPMKALI 240
            +K TK   E+++I+ LVRDYSAS D+VSLDWKKMKIPPVL S+EH  LFKL+QPMKAL+
Sbjct: 181 DKKVTKRQQEEEKIERLVRDYSASNDIVSLDWKKMKIPPVLSSTEHAWLFKLMQPMKALL 240

Query: 241 QVQEELQKEFGREPTEGELANATNMNVIQVRRQLEVGRAARNKLIKHNLRLVLFVINKYF 300
           +V++ LQK  GREP E E+A   NM   +V++++E+GRAARNKLIKHNLRLVLFV+NKYF
Sbjct: 241 EVKDVLQKSLGREPREAEIAGEINMTAGEVKKKIEIGRAARNKLIKHNLRLVLFVMNKYF 300

Query: 301 EDFASGPKFQDLCQAGVKGLITAIDRFEPKRKFRLSTYALFWIRHAIIRSMTLSSFTRVS 360
            +F +GPKFQDLCQAG++GLITAIDRFEPKRKFRLSTY LFWIRHAIIRSMT S+FTRV 
Sbjct: 301 HEFTNGPKFQDLCQAGMRGLITAIDRFEPKRKFRLSTYGLFWIRHAIIRSMTTSNFTRVP 360

Query: 361 FGLDSVRVEIQRAKLELLCELHRLPTEEEVIAKVGISPERYLEVTRATKPVYSLHSRHST 420
           FGL+SVRVEI +AK EL  E+ R PTE+EV+ ++ I+PERY EV RA KPV SL+S+HS 
Sbjct: 361 FGLESVRVEIYKAKTELWFEMGRPPTEDEVVERLKITPERYREVLRAAKPVLSLNSKHSV 420

Query: 421 TSEEFINGITDVEGTGGDNRRQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGNRTLG 480
           T EEFINGITDV+G G +N RQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKG+RTLG
Sbjct: 421 TQEEFINGITDVDGVGANNSRQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGDRTLG 480

Query: 481 EIAGNLNISREMVRKHEVKALMKLKHPARVDYLRR 508
           EIAGNLNISREMVRKHEVKALMKLKH ARVDYLR+
Sbjct: 481 EIAGNLNISREMVRKHEVKALMKLKHQARVDYLRQ 514

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BLAST of Lsi05G000800 vs. ExPASy Swiss-Prot
Match: P26683 (RNA polymerase sigma factor SigA OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576) OX=103690 GN=sigA PE=3 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 3.8e-38
Identity = 112/347 (32.28%), Postives = 182/347 (52.45%), Query Frame = 0


Query: 165 KEGKAAPSLRKQKDTKNEDDEIDGLVRDYSASTDLVSLDWKKMKIPPVLPSSEHTRLFKL 224
           K GKAA S R+ +  K    E            D + L  +++    +L + E   L + 
Sbjct: 59  KSGKAAKSRRRTQSKKKHYTE------------DSIRLYLQEIGRIRLLRADEEIELARK 118

Query: 225 VQPMKALIQVQEELQKEFGREPTEGELANATNMNVIQVRRQLEVGRAARNKLIKHNLRLV 284
           +  +  L +V+E L ++  R+P + E A A  + +   R +L +GR A++K+++ NLRLV
Sbjct: 119 IADLLELERVRERLSEKLERDPRDSEWAEAVQLPLPAFRYRLHIGRRAKDKMVQSNLRLV 178

Query: 285 LFVINKYFEDFASGPKFQDLCQAGVKGLITAIDRFEPKRKFRLSTYALFWIRHAIIRSMT 344
           + +  KY      G  FQDL Q G  GLI A ++F+ ++ ++ STYA +WIR AI R++ 
Sbjct: 179 VSIAKKYMN---RGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIA 238

Query: 345 LSSFT-RVSFGLDSVRVEIQRAKLELLCELHRLPTEEEVIAKVGISPERYLEVTRATKPV 404
             S T R+   L      I++    L  E+ R PTEEE+  ++ ++ E+   + ++ +  
Sbjct: 239 DQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEKLRFIAKSAQLP 298

Query: 405 YSLHSRHSTTSEEFINGITDVEGTGGDNRRQPALLRLALDDVLDSLKPKESLVIRQRYGL 464
            SL +      +  +    + +G   +++    LLR  L+ VLDSL P+E  V+R RYGL
Sbjct: 299 ISLETPIGKEEDSRLGDFIESDGETPEDQVSKNLLREDLEKVLDSLSPRERDVLRLRYGL 358

Query: 465 DGKGNRTLGEIAGNLNISREMVRKHEVKALMKLKHPARVDYLRRSYR 511
           D    +TL EI    N++RE +R+ E KAL KL+HP R   L+   R
Sbjct: 359 DDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSVLKEYIR 390

[Close]

BLAST of Lsi05G000800 vs. ExPASy Swiss-Prot
Match: P38023 (RNA polymerase sigma factor SigA1 OS=Synechococcus elongatus (strain PCC 7942 / FACHB-805) OX=1140 GN=sigA1 PE=3 SV=2)

HSP 1 Score: 156.8 bits (395), Expect = 7.3e-37
Identity = 100/300 (33.33%), Postives = 166/300 (55.33%), Query Frame = 0


Query: 212 VLPSSEHTRLFKLVQPMKALIQVQEELQKEFGREPTEGELANATNMNVIQVRRQLEVGRA 271
           +L + E   L + +  + AL ++++EL ++  R P++ E A A +  + + RR+L  GR 
Sbjct: 103 LLRADEEIELARQIADLLALERIRDELLEQLDRLPSDAEWAAAVDSPLDEFRRRLFRGRR 162

Query: 272 ARNKLIKHNLRLVLFVINKYFEDFASGPKFQDLCQAGVKGLITAIDRFEPKRKFRLSTYA 331
           A++K+++ NLRLV+ +  KY      G  FQDL Q G  GLI A ++F+ ++ ++ STYA
Sbjct: 163 AKDKMVQSNLRLVVSIAKKYMN---RGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYA 222

Query: 332 LFWIRHAIIRSMTLSSFT-RVSFGLDSVRVEIQRAKLELLCELHRLPTEEEVIAKVGISP 391
            +WIR AI R++   S T R+   L      I++    L  E+ R PTEEE+  ++ ++ 
Sbjct: 223 TWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTI 282

Query: 392 ERYLEVTRATKPVYSLHSRHSTTSEEFINGITDVEGTGGDNRRQPALLRLALDDVLDSLK 451
           E+   + ++ +   SL +      +  +    + +G   ++     LLR  L+ VL +L 
Sbjct: 283 EKLRFIAKSAQLPISLETPIGKEEDSRLGDFIEADGETPEDEVAKNLLREDLEGVLSTLS 342

Query: 452 PKESLVIRQRYGLDGKGNRTLGEIAGNLNISREMVRKHEVKALMKLKHPARVDYLRRSYR 511
           P+E  V+R RYGLD    +TL EI    N++RE +R+ E KAL KL+HP R   L+   R
Sbjct: 343 PRERDVLRLRYGLDDGRMKTLEEIGQLFNVTRERIRQIEAKALRKLRHPNRNSILKEYIR 399

[Close]

BLAST of Lsi05G000800 vs. ExPASy Swiss-Prot
Match: P52322 (RNA polymerase sigma factor SigA OS=Microcystis aeruginosa OX=1126 GN=sigA PE=3 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 8.3e-33
Identity = 89/249 (35.74%), Postives = 139/249 (55.82%), Query Frame = 0


Query: 263 RRQLEVGRAARNKLIKHNLRLVLFVINKYFEDFASGPKFQDLCQAGVKGLITAIDRFEPK 322
           +R+L  GR A+ K+++ NLRLV+ +  KY      G  FQDL Q G  GLI A ++F+ +
Sbjct: 171 KRRLYHGRRAKEKMVQSNLRLVVSIAKKYMN---RGLSFQDLIQEGSLGLIRAAEKFDHE 230

Query: 323 RKFRLSTYALFWIRHAIIRSMTLSSFT-RVSFGLDSVRVEIQRAKLELLCELHRLPTEEE 382
           + ++ STYA +WIR AI R++   S T R+   L      I++    L  E+ R PTEEE
Sbjct: 231 KGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKILSQEMRRKPTEEE 290

Query: 383 VIAKVGISPERYLEVTRATKPVYSLHSRHSTTSEEFINGITDVEGTGGDNRRQPALLRLA 442
           +  K+ ++ E+   + ++ +   SL +      +  +    + +G   ++     LLR  
Sbjct: 291 IATKMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIEADGETPEDEVSKNLLRED 350

Query: 443 LDDVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNISREMVRKHEVKALMKLKHPAR 502
           L++VLD+L P+E  V+R RYGLD    +TL EI    N++RE +R+ E KAL KL+HP R
Sbjct: 351 LENVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNR 410

Query: 503 VDYLRRSYR 511
              L+   R
Sbjct: 411 NSILKEYIR 416

[Close]

BLAST of Lsi05G000800 vs. ExPASy Swiss-Prot
Match: P74565 (RNA polymerase sigma factor SigA OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 GN=sigA PE=3 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 1.3e-30
Identity = 118/423 (27.90%), Postives = 199/423 (47.04%), Query Frame = 0


Query: 96  EAAAKLENIFKLSPVTDEDTDMESKDGRSKRGQQRRKKPDKRPSDGIVR----NQTKRIK 155
           E   +L        + D+D D+E  +      + + KK  K   D + +      + RI 
Sbjct: 17  EQEIELSQYINTDDIDDDDIDVEDLEQEVAATEGKEKKVRKIRKDAVKKKPYTEDSIRIY 76

Query: 156 RLDLDKRIALKSNKEGKAAPSLRKQKDTKNEDDEIDGLVRD---YSASTDLVSLDWKKMK 215
             ++ +   L++ +E + A  +    + +        L+RD            L+W K +
Sbjct: 77  LQEIGRIRLLRAEEEIELARQIADLLELE--------LIRDNLTLQLERQPSELEWGK-Q 136

Query: 216 IPPVLPSSEHTRLFKLVQPMKALIQVQEELQKEFGREPTEGELANATNMNVIQVRRQLEV 275
           +  +  + +     K  +P K    +   L         E E +   N N    RR+L +
Sbjct: 137 VWKLETAKQRLVGDKKKEPKKK--DIDSYLANPDNELSLENEWSQQPNKNFAAFRRRLFL 196

Query: 276 GRAARNKLIKHNLRLVLFVINKYFEDFASGPKFQDLCQAGVKGLITAIDRFEPKRKFRLS 335
            R A++K+++ NLRLV+ +  KY      G  FQDL Q G  GLI A ++F+ ++ ++ S
Sbjct: 197 DRRAKDKMVQSNLRLVVSIAKKYMN---RGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFS 256

Query: 336 TYALFWIRHAIIRSMTLSSFT-RVSFGLDSVRVEIQRAKLELLCELHRLPTEEEVIAKVG 395
           TYA +WIR AI R++   S T R+   L      I++    L  E+ R PTEEE+  K+ 
Sbjct: 257 TYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMRRKPTEEEIAEKME 316

Query: 396 ISPERYLEVTRATKPVYSLHSRHSTTSEEFINGITDVEGTGGDNRRQPALLRLALDDVLD 455
           ++ E+   + ++ +   SL +      +  +    + +G   ++     LLR  L++VLD
Sbjct: 317 MTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIEADGETPEDEVSKNLLREDLENVLD 376

Query: 456 SLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNISREMVRKHEVKALMKLKHPARVDYLRR 511
           +L P+E  V+R RYGLD    +TL EI    N++RE +R+ E KAL KL+HP R   L+ 
Sbjct: 377 TLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSILKE 425

[Close]

BLAST of Lsi05G000800 vs. ExPASy TrEMBL
Match: A0A6J1CHI4 (RNA polymerase sigma factor sigE, chloroplastic/mitochondrial OS=Momordica charantia OX=3673 GN=LOC111011480 PE=3 SV=1)

HSP 1 Score: 902.5 bits (2331), Expect = 8.6e-259
Identity = 471/507 (92.90%), Postives = 488/507 (96.25%), Query Frame = 0


Query: 1   MGVVTVSSSAARTPLRLGAKFSNHNSTLKRPSIVAFKADKHTNTSLVLPHEQVTLPVESN 60
           MGVVTVSSSAARTPLRLGAKFSNHNSTLKRP+IVAFKADKHTNT+LV PHEQVTLPVESN
Sbjct: 1   MGVVTVSSSAARTPLRLGAKFSNHNSTLKRPTIVAFKADKHTNTTLVSPHEQVTLPVESN 60

Query: 61  NRNKKRSGKTSKPLKRVKAVFIDEATPCTLDVDYNEAAAKLENIFKLSPVTDEDTDMESK 120
           NR KKRSGKTSK LKRVKAVF DEA+PCT +VDYNEAAAKLENIF LSP+TD DTD+ESK
Sbjct: 61  NRTKKRSGKTSKSLKRVKAVFTDEASPCTSEVDYNEAAAKLENIFNLSPMTD-DTDVESK 120

Query: 121 DGRSKRGQQRRKKPDKRPSDGIVRNQTKRIKRLDLDKRIALKSNKEGKAAPSLRKQKDTK 180
           DGR + GQQRRKK DKR  DGI+RNQTKRIKRLDLDKRIALK+NKE KAAPSL+KQK+TK
Sbjct: 121 DGRLRSGQQRRKKSDKRSGDGIIRNQTKRIKRLDLDKRIALKNNKEDKAAPSLKKQKETK 180

Query: 181 NEDDEIDGLVRDYSASTDLVSLDWKKMKIPPVLPSSEHTRLFKLVQPMKALIQVQEELQK 240
           NE DEID LVRDYSASTDLVSLDWKKMKIPPVLPSSEHTRLFKLVQPMKALIQVQE+LQK
Sbjct: 181 NEADEIDDLVRDYSASTDLVSLDWKKMKIPPVLPSSEHTRLFKLVQPMKALIQVQEDLQK 240

Query: 241 EFGREPTEGELANATNMNVIQVRRQLEVGRAARNKLIKHNLRLVLFVINKYFEDFASGPK 300
           E GREPTEGELANATNMNV+QVRRQLEVGRAARNKLIKHNLRLVLFVINKYFEDFASGPK
Sbjct: 241 ELGREPTEGELANATNMNVVQVRRQLEVGRAARNKLIKHNLRLVLFVINKYFEDFASGPK 300

Query: 301 FQDLCQAGVKGLITAIDRFEPKRKFRLSTYALFWIRHAIIRSMTLSSFTRVSFGLDSVRV 360
           FQDLCQAGVKGLITAIDRFEPKR+FRLSTYALFWIRHAIIRSMTLSSFTRVSFGLDSVRV
Sbjct: 301 FQDLCQAGVKGLITAIDRFEPKRRFRLSTYALFWIRHAIIRSMTLSSFTRVSFGLDSVRV 360

Query: 361 EIQRAKLELLCELHRLPTEEEVIAKVGISPERYLEVTRATKPVYSLHSRHSTTSEEFING 420
           EIQRAKLELL ELHRLPTEEE++AKVGISPERYLEV RATKPVYSLHSRH+TTSEEFING
Sbjct: 361 EIQRAKLELLFELHRLPTEEEIVAKVGISPERYLEVMRATKPVYSLHSRHATTSEEFING 420

Query: 421 ITDVEGTGGDNRRQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNI 480
           ITDVEG GGDNRRQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNI
Sbjct: 421 ITDVEGAGGDNRRQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNI 480

Query: 481 SREMVRKHEVKALMKLKHPARVDYLRR 508
           SREMVRKHEVKALMKLKHPARVDYLRR
Sbjct: 481 SREMVRKHEVKALMKLKHPARVDYLRR 506

[Close]

BLAST of Lsi05G000800 vs. ExPASy TrEMBL
Match: A0A5A7U8E5 (RNA polymerase sigma factor sigE OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold175G00690 PE=3 SV=1)

HSP 1 Score: 899.0 bits (2322), Expect = 9.5e-258
Identity = 481/545 (88.26%), Postives = 492/545 (90.28%), Query Frame = 0


Query: 1   MGVVTVSSSAARTPLRLGAKFSNHNSTLKRPSIVAFKADKHTNTSLVLPHEQVTLPVESN 60
           MGVVTVSSSAARTP RL AKFSNH STLKRPSIVAFKADKHTNT+LV PHEQVTLPVESN
Sbjct: 1   MGVVTVSSSAARTPFRLSAKFSNHGSTLKRPSIVAFKADKHTNTTLVSPHEQVTLPVESN 60

Query: 61  NRNKKRSGKTSKPLKRVKAVFIDEATPCTLDVDYNEAAAKLENIFKLSPVTDEDTDMESK 120
           NR+KKRSG TSKPLKRVKAV IDEAT C+LD+DYNEAAAKLENIFKLSP+T ED+DMESK
Sbjct: 61  NRSKKRSGNTSKPLKRVKAVLIDEATSCSLDLDYNEAAAKLENIFKLSPMT-EDSDMESK 120

Query: 121 DGRSKRGQQRRKKPDKRPSDGIVRNQTKRIKRLDLD------------------------ 180
           DGRSKRGQQR KK DKRPSDGIVRN+TKRIKRLDLD                        
Sbjct: 121 DGRSKRGQQRSKKSDKRPSDGIVRNKTKRIKRLDLDKRIALKNKKEGRAVALLKKQKDTK 180

Query: 181 --------------KRIALKSNKEGKAAPSLRKQKDTKNEDDEIDGLVRDYSASTDLVSL 240
                         KRIALKSNKEGKAAPSLRKQK+TKNEDDEID LVRDYSASTDLVSL
Sbjct: 181 NEADEIDGLRLDLEKRIALKSNKEGKAAPSLRKQKETKNEDDEIDRLVRDYSASTDLVSL 240

Query: 241 DWKKMKIPPVLPSSEHTRLFKLVQPMKALIQVQEELQKEFGREPTEGELANATNMNVIQV 300
           DWKKMKIPPVLPSSEHTRLFKLVQPMKALI+VQEELQKE GREPTE ELANATNMNVIQV
Sbjct: 241 DWKKMKIPPVLPSSEHTRLFKLVQPMKALIEVQEELQKELGREPTEAELANATNMNVIQV 300

Query: 301 RRQLEVGRAARNKLIKHNLRLVLFVINKYFEDFASGPKFQDLCQAGVKGLITAIDRFEPK 360
           RRQLEVGRAARNKLIKHNLRLVLFVINKYFEDFA+GPKFQDLCQAGVKGLITAIDRFEPK
Sbjct: 301 RRQLEVGRAARNKLIKHNLRLVLFVINKYFEDFATGPKFQDLCQAGVKGLITAIDRFEPK 360

Query: 361 RKFRLSTYALFWIRHAIIRSMTLSSFTRVSFGLDSVRVEIQRAKLELLCELHRLPTEEEV 420
           RKFRLSTYALFWIRHAIIRSMTLSSFTRVSFGLDSVRVEIQRAKLELLCELHRLPTEEE+
Sbjct: 361 RKFRLSTYALFWIRHAIIRSMTLSSFTRVSFGLDSVRVEIQRAKLELLCELHRLPTEEEI 420

Query: 421 IAKVGISPERYLEVTRATKPVYSLHSRHSTTSEEFINGITDVEGTGGDNRRQPALLRLAL 480
           IAKVGISPERYLEV RATKPVYSLHSRHSTTSEE INGITDVEGTGGDNRRQPALLRLAL
Sbjct: 421 IAKVGISPERYLEVMRATKPVYSLHSRHSTTSEELINGITDVEGTGGDNRRQPALLRLAL 480

Query: 481 DDVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNISREMVRKHEVKALMKLKHPARV 508
           DDVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNISREMVRKHEVKALMKLKHPARV
Sbjct: 481 DDVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNISREMVRKHEVKALMKLKHPARV 540

[Close]

BLAST of Lsi05G000800 vs. ExPASy TrEMBL
Match: A0A5D3BY73 (RNA polymerase sigma factor sigE OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold11G00110 PE=3 SV=1)

HSP 1 Score: 897.9 bits (2319), Expect = 2.1e-257
Identity = 480/545 (88.07%), Postives = 492/545 (90.28%), Query Frame = 0


Query: 1   MGVVTVSSSAARTPLRLGAKFSNHNSTLKRPSIVAFKADKHTNTSLVLPHEQVTLPVESN 60
           MGVVTVSSSAARTP RL AKFSNH STLKRPSIVAFKADKHTNT+LV PHEQVTLPVESN
Sbjct: 1   MGVVTVSSSAARTPFRLSAKFSNHGSTLKRPSIVAFKADKHTNTTLVSPHEQVTLPVESN 60

Query: 61  NRNKKRSGKTSKPLKRVKAVFIDEATPCTLDVDYNEAAAKLENIFKLSPVTDEDTDMESK 120
           NR+KKRSG TSKPLKRVKAV IDEAT C+LD+DYNEAAAKLENIFKLSP+T ED+DMESK
Sbjct: 61  NRSKKRSGNTSKPLKRVKAVLIDEATSCSLDLDYNEAAAKLENIFKLSPMT-EDSDMESK 120

Query: 121 DGRSKRGQQRRKKPDKRPSDGIVRNQTKRIKRLDLD------------------------ 180
           DGRSKRGQQR K+ DKRPSDGIVRN+TKRIKRLDLD                        
Sbjct: 121 DGRSKRGQQRSKRSDKRPSDGIVRNKTKRIKRLDLDKRIALKNKKEGRAVALLKKQKDTK 180

Query: 181 --------------KRIALKSNKEGKAAPSLRKQKDTKNEDDEIDGLVRDYSASTDLVSL 240
                         KRIALKSNKEGKAAPSLRKQK+TKNEDDEID LVRDYSASTDLVSL
Sbjct: 181 NEADEIDGLRLDLEKRIALKSNKEGKAAPSLRKQKETKNEDDEIDRLVRDYSASTDLVSL 240

Query: 241 DWKKMKIPPVLPSSEHTRLFKLVQPMKALIQVQEELQKEFGREPTEGELANATNMNVIQV 300
           DWKKMKIPPVLPSSEHTRLFKLVQPMKALI+VQEELQKE GREPTE ELANATNMNVIQV
Sbjct: 241 DWKKMKIPPVLPSSEHTRLFKLVQPMKALIEVQEELQKELGREPTEAELANATNMNVIQV 300

Query: 301 RRQLEVGRAARNKLIKHNLRLVLFVINKYFEDFASGPKFQDLCQAGVKGLITAIDRFEPK 360
           RRQLEVGRAARNKLIKHNLRLVLFVINKYFEDFA+GPKFQDLCQAGVKGLITAIDRFEPK
Sbjct: 301 RRQLEVGRAARNKLIKHNLRLVLFVINKYFEDFATGPKFQDLCQAGVKGLITAIDRFEPK 360

Query: 361 RKFRLSTYALFWIRHAIIRSMTLSSFTRVSFGLDSVRVEIQRAKLELLCELHRLPTEEEV 420
           RKFRLSTYALFWIRHAIIRSMTLSSFTRVSFGLDSVRVEIQRAKLELLCELHRLPTEEE+
Sbjct: 361 RKFRLSTYALFWIRHAIIRSMTLSSFTRVSFGLDSVRVEIQRAKLELLCELHRLPTEEEI 420

Query: 421 IAKVGISPERYLEVTRATKPVYSLHSRHSTTSEEFINGITDVEGTGGDNRRQPALLRLAL 480
           IAKVGISPERYLEV RATKPVYSLHSRHSTTSEE INGITDVEGTGGDNRRQPALLRLAL
Sbjct: 421 IAKVGISPERYLEVMRATKPVYSLHSRHSTTSEELINGITDVEGTGGDNRRQPALLRLAL 480

Query: 481 DDVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNISREMVRKHEVKALMKLKHPARV 508
           DDVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNISREMVRKHEVKALMKLKHPARV
Sbjct: 481 DDVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNISREMVRKHEVKALMKLKHPARV 540

[Close]

BLAST of Lsi05G000800 vs. ExPASy TrEMBL
Match: A0A6J1E518 (RNA polymerase sigma factor sigE, chloroplastic/mitochondrial-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111430670 PE=3 SV=1)

HSP 1 Score: 894.0 bits (2309), Expect = 3.1e-256
Identity = 471/507 (92.90%), Postives = 484/507 (95.46%), Query Frame = 0


Query: 1   MGVVTVSSSAARTPLRLGAKFSNHNSTLKRPSIVAFKADKHTNTSLVLPHEQVTLPVESN 60
           MGVVTVSSSAARTP RLG KFSN+ S LKRPSIVAFK DKHTNT+LV PHEQVTLPVESN
Sbjct: 1   MGVVTVSSSAARTPFRLGGKFSNNISALKRPSIVAFKVDKHTNTTLVSPHEQVTLPVESN 60

Query: 61  NRNKKRSGKTSKPLKRVKAVFIDEATPCTLDVDYNEAAAKLENIFKLSPVTDEDTDMESK 120
           NRN+KR+GK+SK LKRVKAV IDEATPCT DVDYNEAAAKLENIFKLSPVT EDTDME++
Sbjct: 61  NRNQKRTGKSSKSLKRVKAVLIDEATPCTSDVDYNEAAAKLENIFKLSPVT-EDTDMENE 120

Query: 121 DGRSKRGQQRRKKPDKRPSDGIVRNQTKRIKRLDLDKRIALKSNKEGKAAPSLRKQKDTK 180
           DGR KRGQQRRKK  KRP DG+VRNQTKRIKRLDLDKRIALKSNKEGK+APSL KQKDTK
Sbjct: 121 DGRPKRGQQRRKKLGKRPCDGVVRNQTKRIKRLDLDKRIALKSNKEGKSAPSLSKQKDTK 180

Query: 181 NEDDEIDGLVRDYSASTDLVSLDWKKMKIPPVLPSSEHTRLFKLVQPMKALIQVQEELQK 240
           +E DEID LVR+YSASTDLVSLDWKKMKIPPVLPSSEHTRLFKLVQPMKALIQ QEELQK
Sbjct: 181 SEADEIDDLVRNYSASTDLVSLDWKKMKIPPVLPSSEHTRLFKLVQPMKALIQAQEELQK 240

Query: 241 EFGREPTEGELANATNMNVIQVRRQLEVGRAARNKLIKHNLRLVLFVINKYFEDFASGPK 300
             GREPTEGELANATNMNVIQVRRQLEVGRAARNKLIKHNLRLVLFVINKYFEDFASGPK
Sbjct: 241 GLGREPTEGELANATNMNVIQVRRQLEVGRAARNKLIKHNLRLVLFVINKYFEDFASGPK 300

Query: 301 FQDLCQAGVKGLITAIDRFEPKRKFRLSTYALFWIRHAIIRSMTLSSFTRVSFGLDSVRV 360
           FQDLCQAGVKGLITAIDRFEPKR+FRLSTYALFWIRHAIIRSMTLSSFTRVSFGLDSVRV
Sbjct: 301 FQDLCQAGVKGLITAIDRFEPKRRFRLSTYALFWIRHAIIRSMTLSSFTRVSFGLDSVRV 360

Query: 361 EIQRAKLELLCELHRLPTEEEVIAKVGISPERYLEVTRATKPVYSLHSRHSTTSEEFING 420
           EIQRAKLELLCELHRLPTEEEVIAKVGISPERYLEV RATKPVYSLHSRHSTTSEEFI+G
Sbjct: 361 EIQRAKLELLCELHRLPTEEEVIAKVGISPERYLEVMRATKPVYSLHSRHSTTSEEFISG 420

Query: 421 ITDVEGTGGDNRRQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNI 480
           I DVEGTGGDNRRQ ALLRLALDDVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNI
Sbjct: 421 IADVEGTGGDNRRQSALLRLALDDVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNI 480

Query: 481 SREMVRKHEVKALMKLKHPARVDYLRR 508
           SREMVRKHEVKALMKLKHPARVDYLRR
Sbjct: 481 SREMVRKHEVKALMKLKHPARVDYLRR 506

[Close]

BLAST of Lsi05G000800 vs. ExPASy TrEMBL
Match: A0A6J1E9R5 (RNA polymerase sigma factor sigE, chloroplastic/mitochondrial-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111430670 PE=3 SV=1)

HSP 1 Score: 894.0 bits (2309), Expect = 3.1e-256
Identity = 471/507 (92.90%), Postives = 484/507 (95.46%), Query Frame = 0


Query: 1   MGVVTVSSSAARTPLRLGAKFSNHNSTLKRPSIVAFKADKHTNTSLVLPHEQVTLPVESN 60
           MGVVTVSSSAARTP RLG KFSN+ S LKRPSIVAFK DKHTNT+LV PHEQVTLPVESN
Sbjct: 9   MGVVTVSSSAARTPFRLGGKFSNNISALKRPSIVAFKVDKHTNTTLVSPHEQVTLPVESN 68

Query: 61  NRNKKRSGKTSKPLKRVKAVFIDEATPCTLDVDYNEAAAKLENIFKLSPVTDEDTDMESK 120
           NRN+KR+GK+SK LKRVKAV IDEATPCT DVDYNEAAAKLENIFKLSPVT EDTDME++
Sbjct: 69  NRNQKRTGKSSKSLKRVKAVLIDEATPCTSDVDYNEAAAKLENIFKLSPVT-EDTDMENE 128

Query: 121 DGRSKRGQQRRKKPDKRPSDGIVRNQTKRIKRLDLDKRIALKSNKEGKAAPSLRKQKDTK 180
           DGR KRGQQRRKK  KRP DG+VRNQTKRIKRLDLDKRIALKSNKEGK+APSL KQKDTK
Sbjct: 129 DGRPKRGQQRRKKLGKRPCDGVVRNQTKRIKRLDLDKRIALKSNKEGKSAPSLSKQKDTK 188

Query: 181 NEDDEIDGLVRDYSASTDLVSLDWKKMKIPPVLPSSEHTRLFKLVQPMKALIQVQEELQK 240
           +E DEID LVR+YSASTDLVSLDWKKMKIPPVLPSSEHTRLFKLVQPMKALIQ QEELQK
Sbjct: 189 SEADEIDDLVRNYSASTDLVSLDWKKMKIPPVLPSSEHTRLFKLVQPMKALIQAQEELQK 248

Query: 241 EFGREPTEGELANATNMNVIQVRRQLEVGRAARNKLIKHNLRLVLFVINKYFEDFASGPK 300
             GREPTEGELANATNMNVIQVRRQLEVGRAARNKLIKHNLRLVLFVINKYFEDFASGPK
Sbjct: 249 GLGREPTEGELANATNMNVIQVRRQLEVGRAARNKLIKHNLRLVLFVINKYFEDFASGPK 308

Query: 301 FQDLCQAGVKGLITAIDRFEPKRKFRLSTYALFWIRHAIIRSMTLSSFTRVSFGLDSVRV 360
           FQDLCQAGVKGLITAIDRFEPKR+FRLSTYALFWIRHAIIRSMTLSSFTRVSFGLDSVRV
Sbjct: 309 FQDLCQAGVKGLITAIDRFEPKRRFRLSTYALFWIRHAIIRSMTLSSFTRVSFGLDSVRV 368

Query: 361 EIQRAKLELLCELHRLPTEEEVIAKVGISPERYLEVTRATKPVYSLHSRHSTTSEEFING 420
           EIQRAKLELLCELHRLPTEEEVIAKVGISPERYLEV RATKPVYSLHSRHSTTSEEFI+G
Sbjct: 369 EIQRAKLELLCELHRLPTEEEVIAKVGISPERYLEVMRATKPVYSLHSRHSTTSEEFISG 428

Query: 421 ITDVEGTGGDNRRQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNI 480
           I DVEGTGGDNRRQ ALLRLALDDVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNI
Sbjct: 429 IADVEGTGGDNRRQSALLRLALDDVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNI 488

Query: 481 SREMVRKHEVKALMKLKHPARVDYLRR 508
           SREMVRKHEVKALMKLKHPARVDYLRR
Sbjct: 489 SREMVRKHEVKALMKLKHPARVDYLRR 514

[Close]

BLAST of Lsi05G000800 vs. NCBI nr
Match: XP_038903010.1 (RNA polymerase sigma factor sigE, chloroplastic/mitochondrial [Benincasa hispida] >XP_038903018.1 RNA polymerase sigma factor sigE, chloroplastic/mitochondrial [Benincasa hispida])

HSP 1 Score: 930.6 bits (2404), Expect = 6.1e-267
Identity = 488/507 (96.25%), Postives = 495/507 (97.63%), Query Frame = 0


Query: 1   MGVVTVSSSAARTPLRLGAKFSNHNSTLKRPSIVAFKADKHTNTSLVLPHEQVTLPVESN 60
           MGVVTVSSSAAR+P RLGAKF+NHNSTLKRPSIVAFKADKHTNT+LV PHEQVTLPVESN
Sbjct: 1   MGVVTVSSSAARSPFRLGAKFTNHNSTLKRPSIVAFKADKHTNTTLVSPHEQVTLPVESN 60

Query: 61  NRNKKRSGKTSKPLKRVKAVFIDEATPCTLDVDYNEAAAKLENIFKLSPVTDEDTDMESK 120
           N NKKRSGKTSKPLKRVKAV IDEATPCTLDVDYNEAAAKLENIFKLSPVT EDTDMESK
Sbjct: 61  NINKKRSGKTSKPLKRVKAVLIDEATPCTLDVDYNEAAAKLENIFKLSPVT-EDTDMESK 120

Query: 121 DGRSKRGQQRRKKPDKRPSDGIVRNQTKRIKRLDLDKRIALKSNKEGKAAPSLRKQKDTK 180
           DGRSKRGQQRRKK DKR SDGIVRNQTKRIKRLDLDKRIAL+SNKEGKAAPSLRKQKDTK
Sbjct: 121 DGRSKRGQQRRKKSDKRQSDGIVRNQTKRIKRLDLDKRIALRSNKEGKAAPSLRKQKDTK 180

Query: 181 NEDDEIDGLVRDYSASTDLVSLDWKKMKIPPVLPSSEHTRLFKLVQPMKALIQVQEELQK 240
           NEDDEID LVRDYSASTDLVSLDWKKMKIPPVLPSSEHTRLFKLVQPMKALIQVQEELQK
Sbjct: 181 NEDDEIDCLVRDYSASTDLVSLDWKKMKIPPVLPSSEHTRLFKLVQPMKALIQVQEELQK 240

Query: 241 EFGREPTEGELANATNMNVIQVRRQLEVGRAARNKLIKHNLRLVLFVINKYFEDFASGPK 300
           E GREPTEGELAN TNMNVIQVRRQLEVGRAARNKLIKHNLRLVLFVINKYFEDFASGPK
Sbjct: 241 ELGREPTEGELANVTNMNVIQVRRQLEVGRAARNKLIKHNLRLVLFVINKYFEDFASGPK 300

Query: 301 FQDLCQAGVKGLITAIDRFEPKRKFRLSTYALFWIRHAIIRSMTLSSFTRVSFGLDSVRV 360
           FQDLCQAGVKGLITAIDRFEPKRKFRLSTYALFWIRHAIIRSMTLSSFTRVSFGLDSVRV
Sbjct: 301 FQDLCQAGVKGLITAIDRFEPKRKFRLSTYALFWIRHAIIRSMTLSSFTRVSFGLDSVRV 360

Query: 361 EIQRAKLELLCELHRLPTEEEVIAKVGISPERYLEVTRATKPVYSLHSRHSTTSEEFING 420
           EIQ+AKLEL CELHRLPTEEE+IAKVGISPERYLEV RATKPVYSLHS+HSTTSEEFING
Sbjct: 361 EIQKAKLELSCELHRLPTEEEIIAKVGISPERYLEVMRATKPVYSLHSKHSTTSEEFING 420

Query: 421 ITDVEGTGGDNRRQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNI 480
           ITDVEGTGGDNRRQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNI
Sbjct: 421 ITDVEGTGGDNRRQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNI 480

Query: 481 SREMVRKHEVKALMKLKHPARVDYLRR 508
           SREMVRKHEVKALMKLKHPARVDYLRR
Sbjct: 481 SREMVRKHEVKALMKLKHPARVDYLRR 506

[Close]

BLAST of Lsi05G000800 vs. NCBI nr
Match: XP_022140941.1 (RNA polymerase sigma factor sigE, chloroplastic/mitochondrial [Momordica charantia] >XP_022140943.1 RNA polymerase sigma factor sigE, chloroplastic/mitochondrial [Momordica charantia])

HSP 1 Score: 902.5 bits (2331), Expect = 1.8e-258
Identity = 471/507 (92.90%), Postives = 488/507 (96.25%), Query Frame = 0


Query: 1   MGVVTVSSSAARTPLRLGAKFSNHNSTLKRPSIVAFKADKHTNTSLVLPHEQVTLPVESN 60
           MGVVTVSSSAARTPLRLGAKFSNHNSTLKRP+IVAFKADKHTNT+LV PHEQVTLPVESN
Sbjct: 1   MGVVTVSSSAARTPLRLGAKFSNHNSTLKRPTIVAFKADKHTNTTLVSPHEQVTLPVESN 60

Query: 61  NRNKKRSGKTSKPLKRVKAVFIDEATPCTLDVDYNEAAAKLENIFKLSPVTDEDTDMESK 120
           NR KKRSGKTSK LKRVKAVF DEA+PCT +VDYNEAAAKLENIF LSP+TD DTD+ESK
Sbjct: 61  NRTKKRSGKTSKSLKRVKAVFTDEASPCTSEVDYNEAAAKLENIFNLSPMTD-DTDVESK 120

Query: 121 DGRSKRGQQRRKKPDKRPSDGIVRNQTKRIKRLDLDKRIALKSNKEGKAAPSLRKQKDTK 180
           DGR + GQQRRKK DKR  DGI+RNQTKRIKRLDLDKRIALK+NKE KAAPSL+KQK+TK
Sbjct: 121 DGRLRSGQQRRKKSDKRSGDGIIRNQTKRIKRLDLDKRIALKNNKEDKAAPSLKKQKETK 180

Query: 181 NEDDEIDGLVRDYSASTDLVSLDWKKMKIPPVLPSSEHTRLFKLVQPMKALIQVQEELQK 240
           NE DEID LVRDYSASTDLVSLDWKKMKIPPVLPSSEHTRLFKLVQPMKALIQVQE+LQK
Sbjct: 181 NEADEIDDLVRDYSASTDLVSLDWKKMKIPPVLPSSEHTRLFKLVQPMKALIQVQEDLQK 240

Query: 241 EFGREPTEGELANATNMNVIQVRRQLEVGRAARNKLIKHNLRLVLFVINKYFEDFASGPK 300
           E GREPTEGELANATNMNV+QVRRQLEVGRAARNKLIKHNLRLVLFVINKYFEDFASGPK
Sbjct: 241 ELGREPTEGELANATNMNVVQVRRQLEVGRAARNKLIKHNLRLVLFVINKYFEDFASGPK 300

Query: 301 FQDLCQAGVKGLITAIDRFEPKRKFRLSTYALFWIRHAIIRSMTLSSFTRVSFGLDSVRV 360
           FQDLCQAGVKGLITAIDRFEPKR+FRLSTYALFWIRHAIIRSMTLSSFTRVSFGLDSVRV
Sbjct: 301 FQDLCQAGVKGLITAIDRFEPKRRFRLSTYALFWIRHAIIRSMTLSSFTRVSFGLDSVRV 360

Query: 361 EIQRAKLELLCELHRLPTEEEVIAKVGISPERYLEVTRATKPVYSLHSRHSTTSEEFING 420
           EIQRAKLELL ELHRLPTEEE++AKVGISPERYLEV RATKPVYSLHSRH+TTSEEFING
Sbjct: 361 EIQRAKLELLFELHRLPTEEEIVAKVGISPERYLEVMRATKPVYSLHSRHATTSEEFING 420

Query: 421 ITDVEGTGGDNRRQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNI 480
           ITDVEG GGDNRRQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNI
Sbjct: 421 ITDVEGAGGDNRRQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNI 480

Query: 481 SREMVRKHEVKALMKLKHPARVDYLRR 508
           SREMVRKHEVKALMKLKHPARVDYLRR
Sbjct: 481 SREMVRKHEVKALMKLKHPARVDYLRR 506

[Close]

BLAST of Lsi05G000800 vs. NCBI nr
Match: KAA0050456.1 (RNA polymerase sigma factor sigE [Cucumis melo var. makuwa])

HSP 1 Score: 899.0 bits (2322), Expect = 2.0e-257
Identity = 481/545 (88.26%), Postives = 492/545 (90.28%), Query Frame = 0


Query: 1   MGVVTVSSSAARTPLRLGAKFSNHNSTLKRPSIVAFKADKHTNTSLVLPHEQVTLPVESN 60
           MGVVTVSSSAARTP RL AKFSNH STLKRPSIVAFKADKHTNT+LV PHEQVTLPVESN
Sbjct: 1   MGVVTVSSSAARTPFRLSAKFSNHGSTLKRPSIVAFKADKHTNTTLVSPHEQVTLPVESN 60

Query: 61  NRNKKRSGKTSKPLKRVKAVFIDEATPCTLDVDYNEAAAKLENIFKLSPVTDEDTDMESK 120
           NR+KKRSG TSKPLKRVKAV IDEAT C+LD+DYNEAAAKLENIFKLSP+T ED+DMESK
Sbjct: 61  NRSKKRSGNTSKPLKRVKAVLIDEATSCSLDLDYNEAAAKLENIFKLSPMT-EDSDMESK 120

Query: 121 DGRSKRGQQRRKKPDKRPSDGIVRNQTKRIKRLDLD------------------------ 180
           DGRSKRGQQR KK DKRPSDGIVRN+TKRIKRLDLD                        
Sbjct: 121 DGRSKRGQQRSKKSDKRPSDGIVRNKTKRIKRLDLDKRIALKNKKEGRAVALLKKQKDTK 180

Query: 181 --------------KRIALKSNKEGKAAPSLRKQKDTKNEDDEIDGLVRDYSASTDLVSL 240
                         KRIALKSNKEGKAAPSLRKQK+TKNEDDEID LVRDYSASTDLVSL
Sbjct: 181 NEADEIDGLRLDLEKRIALKSNKEGKAAPSLRKQKETKNEDDEIDRLVRDYSASTDLVSL 240

Query: 241 DWKKMKIPPVLPSSEHTRLFKLVQPMKALIQVQEELQKEFGREPTEGELANATNMNVIQV 300
           DWKKMKIPPVLPSSEHTRLFKLVQPMKALI+VQEELQKE GREPTE ELANATNMNVIQV
Sbjct: 241 DWKKMKIPPVLPSSEHTRLFKLVQPMKALIEVQEELQKELGREPTEAELANATNMNVIQV 300

Query: 301 RRQLEVGRAARNKLIKHNLRLVLFVINKYFEDFASGPKFQDLCQAGVKGLITAIDRFEPK 360
           RRQLEVGRAARNKLIKHNLRLVLFVINKYFEDFA+GPKFQDLCQAGVKGLITAIDRFEPK
Sbjct: 301 RRQLEVGRAARNKLIKHNLRLVLFVINKYFEDFATGPKFQDLCQAGVKGLITAIDRFEPK 360

Query: 361 RKFRLSTYALFWIRHAIIRSMTLSSFTRVSFGLDSVRVEIQRAKLELLCELHRLPTEEEV 420
           RKFRLSTYALFWIRHAIIRSMTLSSFTRVSFGLDSVRVEIQRAKLELLCELHRLPTEEE+
Sbjct: 361 RKFRLSTYALFWIRHAIIRSMTLSSFTRVSFGLDSVRVEIQRAKLELLCELHRLPTEEEI 420

Query: 421 IAKVGISPERYLEVTRATKPVYSLHSRHSTTSEEFINGITDVEGTGGDNRRQPALLRLAL 480
           IAKVGISPERYLEV RATKPVYSLHSRHSTTSEE INGITDVEGTGGDNRRQPALLRLAL
Sbjct: 421 IAKVGISPERYLEVMRATKPVYSLHSRHSTTSEELINGITDVEGTGGDNRRQPALLRLAL 480

Query: 481 DDVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNISREMVRKHEVKALMKLKHPARV 508
           DDVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNISREMVRKHEVKALMKLKHPARV
Sbjct: 481 DDVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNISREMVRKHEVKALMKLKHPARV 540

[Close]

BLAST of Lsi05G000800 vs. NCBI nr
Match: TYK03136.1 (RNA polymerase sigma factor sigE [Cucumis melo var. makuwa])

HSP 1 Score: 897.9 bits (2319), Expect = 4.4e-257
Identity = 480/545 (88.07%), Postives = 492/545 (90.28%), Query Frame = 0


Query: 1   MGVVTVSSSAARTPLRLGAKFSNHNSTLKRPSIVAFKADKHTNTSLVLPHEQVTLPVESN 60
           MGVVTVSSSAARTP RL AKFSNH STLKRPSIVAFKADKHTNT+LV PHEQVTLPVESN
Sbjct: 1   MGVVTVSSSAARTPFRLSAKFSNHGSTLKRPSIVAFKADKHTNTTLVSPHEQVTLPVESN 60

Query: 61  NRNKKRSGKTSKPLKRVKAVFIDEATPCTLDVDYNEAAAKLENIFKLSPVTDEDTDMESK 120
           NR+KKRSG TSKPLKRVKAV IDEAT C+LD+DYNEAAAKLENIFKLSP+T ED+DMESK
Sbjct: 61  NRSKKRSGNTSKPLKRVKAVLIDEATSCSLDLDYNEAAAKLENIFKLSPMT-EDSDMESK 120

Query: 121 DGRSKRGQQRRKKPDKRPSDGIVRNQTKRIKRLDLD------------------------ 180
           DGRSKRGQQR K+ DKRPSDGIVRN+TKRIKRLDLD                        
Sbjct: 121 DGRSKRGQQRSKRSDKRPSDGIVRNKTKRIKRLDLDKRIALKNKKEGRAVALLKKQKDTK 180

Query: 181 --------------KRIALKSNKEGKAAPSLRKQKDTKNEDDEIDGLVRDYSASTDLVSL 240
                         KRIALKSNKEGKAAPSLRKQK+TKNEDDEID LVRDYSASTDLVSL
Sbjct: 181 NEADEIDGLRLDLEKRIALKSNKEGKAAPSLRKQKETKNEDDEIDRLVRDYSASTDLVSL 240

Query: 241 DWKKMKIPPVLPSSEHTRLFKLVQPMKALIQVQEELQKEFGREPTEGELANATNMNVIQV 300
           DWKKMKIPPVLPSSEHTRLFKLVQPMKALI+VQEELQKE GREPTE ELANATNMNVIQV
Sbjct: 241 DWKKMKIPPVLPSSEHTRLFKLVQPMKALIEVQEELQKELGREPTEAELANATNMNVIQV 300

Query: 301 RRQLEVGRAARNKLIKHNLRLVLFVINKYFEDFASGPKFQDLCQAGVKGLITAIDRFEPK 360
           RRQLEVGRAARNKLIKHNLRLVLFVINKYFEDFA+GPKFQDLCQAGVKGLITAIDRFEPK
Sbjct: 301 RRQLEVGRAARNKLIKHNLRLVLFVINKYFEDFATGPKFQDLCQAGVKGLITAIDRFEPK 360

Query: 361 RKFRLSTYALFWIRHAIIRSMTLSSFTRVSFGLDSVRVEIQRAKLELLCELHRLPTEEEV 420
           RKFRLSTYALFWIRHAIIRSMTLSSFTRVSFGLDSVRVEIQRAKLELLCELHRLPTEEE+
Sbjct: 361 RKFRLSTYALFWIRHAIIRSMTLSSFTRVSFGLDSVRVEIQRAKLELLCELHRLPTEEEI 420

Query: 421 IAKVGISPERYLEVTRATKPVYSLHSRHSTTSEEFINGITDVEGTGGDNRRQPALLRLAL 480
           IAKVGISPERYLEV RATKPVYSLHSRHSTTSEE INGITDVEGTGGDNRRQPALLRLAL
Sbjct: 421 IAKVGISPERYLEVMRATKPVYSLHSRHSTTSEELINGITDVEGTGGDNRRQPALLRLAL 480

Query: 481 DDVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNISREMVRKHEVKALMKLKHPARV 508
           DDVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNISREMVRKHEVKALMKLKHPARV
Sbjct: 481 DDVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNISREMVRKHEVKALMKLKHPARV 540

[Close]

BLAST of Lsi05G000800 vs. NCBI nr
Match: XP_022922776.1 (RNA polymerase sigma factor sigE, chloroplastic/mitochondrial-like isoform X2 [Cucurbita moschata] >XP_022922777.1 RNA polymerase sigma factor sigE, chloroplastic/mitochondrial-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 894.0 bits (2309), Expect = 6.3e-256
Identity = 471/507 (92.90%), Postives = 484/507 (95.46%), Query Frame = 0


Query: 1   MGVVTVSSSAARTPLRLGAKFSNHNSTLKRPSIVAFKADKHTNTSLVLPHEQVTLPVESN 60
           MGVVTVSSSAARTP RLG KFSN+ S LKRPSIVAFK DKHTNT+LV PHEQVTLPVESN
Sbjct: 1   MGVVTVSSSAARTPFRLGGKFSNNISALKRPSIVAFKVDKHTNTTLVSPHEQVTLPVESN 60

Query: 61  NRNKKRSGKTSKPLKRVKAVFIDEATPCTLDVDYNEAAAKLENIFKLSPVTDEDTDMESK 120
           NRN+KR+GK+SK LKRVKAV IDEATPCT DVDYNEAAAKLENIFKLSPVT EDTDME++
Sbjct: 61  NRNQKRTGKSSKSLKRVKAVLIDEATPCTSDVDYNEAAAKLENIFKLSPVT-EDTDMENE 120

Query: 121 DGRSKRGQQRRKKPDKRPSDGIVRNQTKRIKRLDLDKRIALKSNKEGKAAPSLRKQKDTK 180
           DGR KRGQQRRKK  KRP DG+VRNQTKRIKRLDLDKRIALKSNKEGK+APSL KQKDTK
Sbjct: 121 DGRPKRGQQRRKKLGKRPCDGVVRNQTKRIKRLDLDKRIALKSNKEGKSAPSLSKQKDTK 180

Query: 181 NEDDEIDGLVRDYSASTDLVSLDWKKMKIPPVLPSSEHTRLFKLVQPMKALIQVQEELQK 240
           +E DEID LVR+YSASTDLVSLDWKKMKIPPVLPSSEHTRLFKLVQPMKALIQ QEELQK
Sbjct: 181 SEADEIDDLVRNYSASTDLVSLDWKKMKIPPVLPSSEHTRLFKLVQPMKALIQAQEELQK 240

Query: 241 EFGREPTEGELANATNMNVIQVRRQLEVGRAARNKLIKHNLRLVLFVINKYFEDFASGPK 300
             GREPTEGELANATNMNVIQVRRQLEVGRAARNKLIKHNLRLVLFVINKYFEDFASGPK
Sbjct: 241 GLGREPTEGELANATNMNVIQVRRQLEVGRAARNKLIKHNLRLVLFVINKYFEDFASGPK 300

Query: 301 FQDLCQAGVKGLITAIDRFEPKRKFRLSTYALFWIRHAIIRSMTLSSFTRVSFGLDSVRV 360
           FQDLCQAGVKGLITAIDRFEPKR+FRLSTYALFWIRHAIIRSMTLSSFTRVSFGLDSVRV
Sbjct: 301 FQDLCQAGVKGLITAIDRFEPKRRFRLSTYALFWIRHAIIRSMTLSSFTRVSFGLDSVRV 360

Query: 361 EIQRAKLELLCELHRLPTEEEVIAKVGISPERYLEVTRATKPVYSLHSRHSTTSEEFING 420
           EIQRAKLELLCELHRLPTEEEVIAKVGISPERYLEV RATKPVYSLHSRHSTTSEEFI+G
Sbjct: 361 EIQRAKLELLCELHRLPTEEEVIAKVGISPERYLEVMRATKPVYSLHSRHSTTSEEFISG 420

Query: 421 ITDVEGTGGDNRRQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNI 480
           I DVEGTGGDNRRQ ALLRLALDDVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNI
Sbjct: 421 IADVEGTGGDNRRQSALLRLALDDVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNI 480

Query: 481 SREMVRKHEVKALMKLKHPARVDYLRR 508
           SREMVRKHEVKALMKLKHPARVDYLRR
Sbjct: 481 SREMVRKHEVKALMKLKHPARVDYLRR 506

[Close]

BLAST of Lsi05G000800 vs. TAIR 10
Match: AT5G24120.1 (sigma factor E )

HSP 1 Score: 617.1 bits (1590), Expect = 1.4e-176
Identity = 335/515 (65.05%), Postives = 406/515 (78.83%), Query Frame = 0


Query: 1   MGVVTVSSSAARTPLRLGAKFSNHNSTLKRPSIVAFKADKHTNTSLVL-PHEQVTLPVES 60
           MGVV++SSSAAR+PL LG     H S+LK+PSIVAFKAD  +N++L++ P EQV +P E 
Sbjct: 1   MGVVSISSSAARSPLGLGNDLLTHRSSLKKPSIVAFKADDSSNSALIIPPREQVLIPAEK 60

Query: 61  NNRNKKRSGKTSKPLKRVK---AVFIDEATPCTLDVDYNEAAAKLENIFKLSPVTDE--D 120
           +N  KKR     KP K  K   ++  + A  C+L VDYNEAAA+LE+I+KLSP T    +
Sbjct: 61  HN-EKKREVTRRKPCKTPKKPLSLEHNSAPSCSLGVDYNEAAARLESIYKLSPATTTLVE 120

Query: 121 TDMESKDGRSKRGQQRRKKPDKRPSDGIVRNQTKRIKRLDLDKRIALKSNKEGKAAPSLR 180
            D+E    ++K  ++R++K        +VRN  K+ KR+ LDKRIALK N + K   +  
Sbjct: 121 DDVEDGGSKAKVSRRRKRKESGEEKKVVVRNNVKKEKRMSLDKRIALKRNVQEKPVVASV 180

Query: 181 KQKDTK--NEDDEIDGLVRDYSASTDLVSLDWKKMKIPPVLPSSEHTRLFKLVQPMKALI 240
            +K TK   E+++I+ LVRDYSAS D+VSLDWKKMKIPPVL S+EH  LFKL+QPMKAL+
Sbjct: 181 DKKVTKRQQEEEKIERLVRDYSASNDIVSLDWKKMKIPPVLSSTEHAWLFKLMQPMKALL 240

Query: 241 QVQEELQKEFGREPTEGELANATNMNVIQVRRQLEVGRAARNKLIKHNLRLVLFVINKYF 300
           +V++ LQK  GREP E E+A   NM   +V++++E+GRAARNKLIKHNLRLVLFV+NKYF
Sbjct: 241 EVKDVLQKSLGREPREAEIAGEINMTAGEVKKKIEIGRAARNKLIKHNLRLVLFVMNKYF 300

Query: 301 EDFASGPKFQDLCQAGVKGLITAIDRFEPKRKFRLSTYALFWIRHAIIRSMTLSSFTRVS 360
            +F +GPKFQDLCQAG++GLITAIDRFEPKRKFRLSTY LFWIRHAIIRSMT S+FTRV 
Sbjct: 301 HEFTNGPKFQDLCQAGMRGLITAIDRFEPKRKFRLSTYGLFWIRHAIIRSMTTSNFTRVP 360

Query: 361 FGLDSVRVEIQRAKLELLCELHRLPTEEEVIAKVGISPERYLEVTRATKPVYSLHSRHST 420
           FGL+SVRVEI +AK EL  E+ R PTE+EV+ ++ I+PERY EV RA KPV SL+S+HS 
Sbjct: 361 FGLESVRVEIYKAKTELWFEMGRPPTEDEVVERLKITPERYREVLRAAKPVLSLNSKHSV 420

Query: 421 TSEEFINGITDVEGTGGDNRRQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGNRTLG 480
           T EEFINGITDV+G G +N RQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKG+RTLG
Sbjct: 421 TQEEFINGITDVDGVGANNSRQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGDRTLG 480

Query: 481 EIAGNLNISREMVRKHEVKALMKLKHPARVDYLRR 508
           EIAGNLNISREMVRKHEVKALMKLKH ARVDYLR+
Sbjct: 481 EIAGNLNISREMVRKHEVKALMKLKHQARVDYLRQ 514

[Close]

BLAST of Lsi05G000800 vs. TAIR 10
Match: AT1G08540.1 (RNApolymerase sigma subunit 2 )

HSP 1 Score: 129.8 bits (325), Expect = 6.7e-30
Identity = 111/406 (27.34%), Postives = 199/406 (49.01%), Query Frame = 0


Query: 110 VTDEDTDMESKDGRSKRGQQRRKKPDKRPSDGIVRNQTKRIKRLDLDKRIALKSNKEG-- 169
           +T   ++ ES        Q+  +  +++PS  +    T++ +R    +   L+    G  
Sbjct: 178 ITASASNKESIGDLESEKQEEVELLEEQPSVSLAVRSTRQTER-KARRAKGLEKTASGIP 237

Query: 170 --KAAPSLRKQKDTKNEDDEIDGL--VRDYSASTDLVSLDWKKMKIPPVLPSSEHTRLFK 229
             K   S +K++    E D  D L  +R  ++S+ L+++              E   L  
Sbjct: 238 SVKTGSSPKKKRLVAQEVDHNDPLRYLRMTTSSSKLLTV-------------REEHELSA 297

Query: 230 LVQPMKALIQVQEELQKEFGREPTEGELANATNMNVIQVRRQLEVGRAARNKLIKHNLRL 289
            +Q +  L ++Q EL +  GR+PT  + A+A  ++   +R+++  G   ++K+IK N+RL
Sbjct: 298 GIQDLLKLERLQTELTERSGRQPTFAQWASAAGVDQKSLRQRIHHGTLCKDKMIKSNIRL 357

Query: 290 VLFVINKYFEDFASGPKFQDLCQAGVKGLITAIDRFEPKRKFRLSTYALFWIRHAIIRSM 349
           V+ +   Y     +G   QDL Q G +GL+   ++F+  + F+ STYA +WI+ A+ +S+
Sbjct: 358 VISIAKNY---QGAGMNLQDLVQEGCRGLVRGAEKFDATKGFKFSTYAHWWIKQAVRKSL 417

Query: 350 T-LSSFTRVSFGLDSVRVEIQRAKLELLCELHRLPTEEEVIAKVGISPERYLEVTRATKP 409
           +  S   R+ F +      ++ A+ +L  E  + P  EE+    G+S +R + V  + KP
Sbjct: 418 SDQSRMIRLPFHMVEATYRVKEARKQLYSETGKHPKNEEIAEATGLSMKRLMAVLLSPKP 477

Query: 410 VYSLHSRHSTTSE-EFINGITDVEGTGGDNRRQPALLRLALDDVLDSLKPKESLVIRQRY 469
             SL  +       +    I D E    ++      +R  LD VLDSL  +E  VIR R+
Sbjct: 478 PRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFMRQDLDKVLDSLGTREKQVIRWRF 537

Query: 470 GLDGKGNRTLGEIAGNLNISREMVRKHEVKALMKLKHPARVDYLRR 508
           G++    +TL EI   + +SRE VR+ E  A  KLK+  R ++L++
Sbjct: 538 GMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKNKKRNNHLQQ 566

[Close]

BLAST of Lsi05G000800 vs. TAIR 10
Match: AT2G36990.1 (RNApolymerase sigma-subunit F )

HSP 1 Score: 128.6 bits (322), Expect = 1.5e-29
Identity = 93/291 (31.96%), Postives = 161/291 (55.33%), Query Frame = 0


Query: 212 VLPSSEHTRLFKLVQPMKALIQVQEELQKEFGREPTEGELANATNMNVIQVRRQLEVGRA 271
           +L + E   L   +Q +  L +V+ +L+ + G EPT GE A A  ++   ++  +  GR+
Sbjct: 247 LLTAKEEAELISHIQHLLKLEKVKTKLESQNGCEPTIGEWAEAMGISSPVLKSDIHRGRS 306

Query: 272 ARNKLIKHNLRLVLFVINKYFEDFASGPKFQDLCQAGVKGLITAIDRFEPKRKFRLSTYA 331
           +R KLI  NLRLV+ +  +Y      G  FQDL Q G  GL+ ++++F+P+   R +TYA
Sbjct: 307 SREKLITANLRLVVHIAKQYQN---RGLNFQDLLQEGSMGLMKSVEKFKPQSGCRFATYA 366

Query: 332 LFWIRHAIIRSMTLSSFT-RVSFGLDSVRVEIQRAKLELLCELHRLPTEEEVIAKVGISP 391
            +WIR +I +S+  +S T R+   +  +  ++  A+   + E +  P++EE+   VG+S 
Sbjct: 367 YWWIRQSIRKSIFQNSRTIRLPENVYMLLGKVSEARKTCVQEGNYRPSKEELAGHVGVST 426

Query: 392 ERYLEVTRATKPVYSLH----SRHSTTSEEFINGITDVEGTGGDNRRQPALLRLALDDVL 451
           E+  ++   T+   S+     S   TT +E I   + +E       +Q  L+R  + ++L
Sbjct: 427 EKLDKLLYNTRTPLSMQQPIWSDQDTTFQE-ITPDSGIETPTMSVGKQ--LMRNHVRNLL 486

Query: 452 DSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNISREMVRKHEVKALMKLK 498
           + L PKE  +I+ R+G+DG   R+L EI     +S+E VR+ E +AL +LK
Sbjct: 487 NVLSPKERRIIKLRFGIDGGKQRSLSEIGEIYGLSKERVRQLESRALYRLK 531

[Close]

BLAST of Lsi05G000800 vs. TAIR 10
Match: AT1G64860.1 (sigma factor A )

HSP 1 Score: 98.6 bits (244), Expect = 1.7e-20
Identity = 91/299 (30.43%), Postives = 146/299 (48.83%), Query Frame = 0


Query: 212 VLPSSEHTRLFKLVQPMKALIQVQEELQKEFGREPTEGELANATNMNVIQVRRQLEVGRA 271
           VL   E  RL K ++    L   +  L+   G EP++ +LA +  ++  +++  L     
Sbjct: 199 VLSHVEVVRLSKKIKSGLRLDDHKSRLKDRLGCEPSDEQLAVSLKISRAELQAWLMECHL 258

Query: 272 ARNKLIKHNLRLVLFVINKYFEDFASGPKFQDLCQAGVKGLITAIDRFEPKRKFRLSTYA 331
           AR KL   N+RLV+ +  +Y      G +  DL Q G+ GL+  I++F+  + FR+STY 
Sbjct: 259 AREKLAMSNVRLVMSIAQRYDN---LGAEMSDLVQGGLIGLLRGIEKFDSSKGFRISTYV 318

Query: 332 LFWIRHAIIRSMTLSSFT-RVSFGLDSVRVEIQRAKLELLCELHRLPTEEEVIAKVGISP 391
            +WIR  + R++  +S T R+   L      I+ AKL L  E    P+ + +   + +S 
Sbjct: 319 YWWIRQGVSRALVDNSRTLRLPTHLHERLGLIRNAKLRLQ-EKGITPSIDRIAESLNMSQ 378

Query: 392 ERYLEVTRATKPVYSLHSRHSTTSEEFINGITD---VEGTGGDNRRQPALLRLALDD--- 451
           ++    T A   V+SL  R +  S   + G T    +  T  +N        LAL +   
Sbjct: 379 KKVRNATEAVSKVFSL-DRDAFPSLNGLPGETHHSYIADTRLENNPWHGYDDLALKEEVS 438

Query: 452 --VLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNISREMVRKHEVKALMKLKHPAR 502
             +  +L  +E  +IR  YGLD K   T  +I+  + +SRE VR+  + AL KLKH AR
Sbjct: 439 KLISATLGEREKEIIRLYYGLD-KECLTWEDISKRIGLSRERVRQVGLVALEKLKHAAR 491

[Close]

BLAST of Lsi05G000800 vs. TAIR 10
Match: AT3G53920.1 (RNApolymerase sigma-subunit C )

HSP 1 Score: 90.9 bits (224), Expect = 3.5e-18
Identity = 80/297 (26.94%), Postives = 138/297 (46.46%), Query Frame = 0


Query: 215 SSEHTRLFKLVQPMKALIQVQEELQKEFGREPTEGELANATNMNVIQVRRQLEVGRAARN 274
           S   T +   V+ +  + +++ +L++E G+  +    A A  MN   + R L  G   R+
Sbjct: 275 SRNETEMSTGVKIVADMERIRTQLEEESGKVASLSCWAAAAGMNEKLLMRNLHYGWYCRD 334

Query: 275 KLIKHNLRLVLFVINKYFEDFASGPKFQDLCQAGVKGLITAIDRFEPKRKFRLSTYALFW 334
           +L+K    LVLF+   Y      G   +DL QAG  G++   +RF+  R ++ STY  +W
Sbjct: 335 ELVKSTRSLVLFLARNY---RGLGIAHEDLIQAGYVGVLQGAERFDHTRGYKFSTYVQYW 394

Query: 335 IRHAIIRSMTLSSFTR-VSFGLDSVRV--EIQRAKLELLCELH-RLPTEEEVIAKVGISP 394
           IR ++  S  +S   R V      +R    IQ+A+  L      +   +EE+    G S 
Sbjct: 395 IRKSM--STMVSRHARGVHIPSSIIRTINHIQKARKTLKTSHGIKYAADEEIAKLTGHSV 454

Query: 395 ERYLEVTRATKPVYSLHSR-HSTTSEEFINGITDVEGTGGDNRRQPALLRLALDDVLDSL 454
           ++     +  K V S+  +     + +F+    D      +        R  + D+L+ L
Sbjct: 455 KKIRAANQCLKVVGSIDKKVGDCFTTKFLEFTPDTTMESPEEAVMRQSARRDIHDLLEGL 514

Query: 455 KPKESLVIRQRYGLDGKGNRTLGEIAGNLNISREMVRKHEVKALMKLKHPARVDYLR 507
           +P+E  V+  RYGL     ++L EI   L +S+E +RK E +A+ KL+     + LR
Sbjct: 515 EPREKQVMVLRYGLQDYRPKSLEEIGKLLKVSKEWIRKIERRAMAKLRDQPNAEDLR 566

The following BLAST results are available for this feature:

BLAST of Lsi05G000800 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9ZNX9	2.0e-175	65.05	RNA polymerase sigma factor sigE, chloroplastic/mitochondrial OS=Arabidopsis tha...	[more]
P26683	3.8e-38	32.28	RNA polymerase sigma factor SigA OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / UT...	[more]
P38023	7.3e-37	33.33	RNA polymerase sigma factor SigA1 OS=Synechococcus elongatus (strain PCC 7942 / ...	[more]
P52322	8.3e-33	35.74	RNA polymerase sigma factor SigA OS=Microcystis aeruginosa OX=1126 GN=sigA PE=3 ...	[more]
P74565	1.3e-30	27.90	RNA polymerase sigma factor SigA OS=Synechocystis sp. (strain PCC 6803 / Kazusa)...	[more]

BLAST of Lsi05G000800 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CHI4	8.6e-259	92.90	RNA polymerase sigma factor sigE, chloroplastic/mitochondrial OS=Momordica chara...	[more]
A0A5A7U8E5	9.5e-258	88.26	RNA polymerase sigma factor sigE OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27...	[more]
A0A5D3BY73	2.1e-257	88.07	RNA polymerase sigma factor sigE OS=Cucumis melo var. makuwa OX=1194695 GN=E5676...	[more]
A0A6J1E518	3.1e-256	92.90	RNA polymerase sigma factor sigE, chloroplastic/mitochondrial-like isoform X2 OS...	[more]
A0A6J1E9R5	3.1e-256	92.90	RNA polymerase sigma factor sigE, chloroplastic/mitochondrial-like isoform X1 OS...	[more]

BLAST of Lsi05G000800 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038903010.1	6.1e-267	96.25	RNA polymerase sigma factor sigE, chloroplastic/mitochondrial [Benincasa hispida...	[more]
XP_022140941.1	1.8e-258	92.90	RNA polymerase sigma factor sigE, chloroplastic/mitochondrial [Momordica charant...	[more]
KAA0050456.1	2.0e-257	88.26	RNA polymerase sigma factor sigE [Cucumis melo var. makuwa]	[more]
TYK03136.1	4.4e-257	88.07	RNA polymerase sigma factor sigE [Cucumis melo var. makuwa]	[more]
XP_022922776.1	6.3e-256	92.90	RNA polymerase sigma factor sigE, chloroplastic/mitochondrial-like isoform X2 [C...	[more]

BLAST of Lsi05G000800 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G24120.1	1.4e-176	65.05	sigma factor E	[more]
AT1G08540.1	6.7e-30	27.34	RNApolymerase sigma subunit 2	[more]
AT2G36990.1	1.5e-29	31.96	RNApolymerase sigma-subunit F	[more]
AT1G64860.1	1.7e-20	30.43	sigma factor A	[more]
AT3G53920.1	3.5e-18	26.94	RNApolymerase sigma-subunit C	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000943	RNA polymerase sigma-70	PRINTS	PR00046	SIGMA70FCT	coord: 449..461 score: 38.21 coord: 303..316 score: 50.0 coord: 327..335 score: 63.94 coord: 485..496 score: 49.09 coord: 470..485 score: 38.47
IPR007630	RNA polymerase sigma-70 region 4	PFAM	PF04545	Sigma70_r4	coord: 445..498 e-value: 2.0E-13 score: 49.7
IPR007627	RNA polymerase sigma-70 region 2	PFAM	PF04542	Sigma70_r2	coord: 276..342 e-value: 1.5E-11 score: 43.9
None	No IPR available	GENE3D	1.10.1740.10		coord: 267..344 e-value: 1.2E-22 score: 81.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 112..182
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 133..182
None	No IPR available	PANTHER	PTHR30603	RNA POLYMERASE SIGMA FACTOR RPO	coord: 2..507
None	No IPR available	PANTHER	PTHR30603:SF4	RNA POLYMERASE SIGMA FACTOR SIGE, CHLOROPLASTIC/MITOCHONDRIAL	coord: 2..507
IPR036388	Winged helix-like DNA-binding domain superfamily	GENE3D	1.10.10.10		coord: 223..266 e-value: 6.2E-6 score: 28.2 coord: 349..401 e-value: 1.0E-5 score: 27.5
IPR036388	Winged helix-like DNA-binding domain superfamily	GENE3D	1.10.10.10		coord: 433..512 e-value: 3.2E-20 score: 73.6
IPR007624	RNA polymerase sigma-70 region 3	PFAM	PF04539	Sigma70_r3	coord: 231..271 e-value: 5.8E-7 score: 29.5 coord: 360..423 e-value: 7.2E-10 score: 38.8
IPR014284	RNA polymerase sigma-70 like domain	TIGRFAM	TIGR02937	TIGR02937	coord: 272..498 e-value: 3.2E-23 score: 80.1
IPR013324	RNA polymerase sigma factor, region 3/4-like	SUPERFAMILY	88659	Sigma3 and sigma4 domains of RNA polymerase sigma factors	coord: 357..415
IPR013324	RNA polymerase sigma factor, region 3/4-like	SUPERFAMILY	88659	Sigma3 and sigma4 domains of RNA polymerase sigma factors	coord: 436..506
IPR013325	RNA polymerase sigma factor, region 2	SUPERFAMILY	88946	Sigma2 domain of RNA polymerase sigma factors	coord: 194..343

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi05G000800.1	Lsi05G000800.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0071482	cellular response to light stimulus
biological_process	GO:2000142	regulation of DNA-templated transcription, initiation
biological_process	GO:0006352	DNA-templated transcription, initiation
biological_process	GO:0006355	regulation of transcription, DNA-templated
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0016987	sigma factor activity
molecular_function	GO:0003700	DNA-binding transcription factor activity