Lsi05G000740 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi05G000740
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
DescriptionArabinogalactan peptide 22
Locationchr05: 1475808 .. 1477782 (-)
RNA-Seq ExpressionLsi05G000740
SyntenyLsi05G000740
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTGTTTTGAGAGCTTGTTTTGGAATTTATGCTGCTGTGATTATTGCTGTCTTTTATGTTGTTACTTTGCCTGTATCTGCAGCTGAAATTTCCTCTTCTCCAGCTCCTGCCCCCACAAGTGATGGTTAGTTCTCTTTTCTTCCTGGTTTTCTCTTTATTCTGTTTGTTTCTTGAGAAATTTTCTGGGAAAAAGACAGGAAATCCATAAAAATGGCTTTGAGAATAGAATTTTCCCTTTAAATTCTAGGTTCTAAGAAGCACCAATTCAATTGGATCTCCTTGAATTGGAAATGGGTTTTGGGGAATTTGGCTCCTTGTTTGAAAAGAAACAAAATTTACTCCTTTTTTCCCACAAGAAGCTGCCATTTTTAGACATTTTAAATTTAGTTTCTTGAATGACAGGGAATATGAGAATGGCTTTGAAATCAACTCTCATCTTCAAATACAAAGTTGAATCTCCTTTAATTGAAAATGGGTTTCTGGTATTTTGAAGAGAGGTTTTGATTTCAAAGGCAAATAGAGTTGTTGGAATTGAATGTCCACCTTAAATTGGGAAAGTTGACTCCTCATTTGAATAGAAAACAGTATCAACTCTTTTTTCTTAGGACATTTTCTTACAGAAACCTTGCTTAGCTATTAATGGTTCTGAACTCCAAAAATAACATTAATTTGGGATTTCATATGTTGCAGGAACCACAATAGACCAAGGCATAGCATATGTTCTAATGCTGGTGGCTTTAGTGCTCACTTATATCATCCATTGATGCAACTTTTGAAAGCACCAAAAAAGCAGAAGAAGAATTAACAGAACATTCAATTCCAATTATGAATTGCATTATTTTCAAGTGTATGAGATGAAAGGAAGAGGGTGTGGTTGTTTCATTCAAATGGGTTATTCTATTGCCATTTTTTCTTTTCTTTTTTTTTGAAGATTGGCAGAGATTTCATTTGTAGAAGGAAAGCCTGTTGTACTTGTATTATAATTTATTTATATTTTTATCATTCTTTTTCTTGAATGATCATTATATTCCTGTGTGTATTCTTATCGTCCCAAACACCCCCACAAAAAGTTTTTAAAAGATTAACAATGTGGACTAAATTTAAGATTTATTGAAATGTAAGAATTAAAAGTGGACAATTGAAAGTATAAGAGCTAAAGACCAAACTTCAATATATAGGGACTCAAAATGGTATTTTAACGTTTATTTTTCTATAAAACTATATATAAACATATTTGACGATAGGATAGAAACACTTAAAACATTTATGAGGAGAAAAGAAGAATCAAAGGAACTCTATCTTCTTTCTAATAAAAAAGTTAAAAAAAAATGGAAAAAAAAAACTAGAAAGAAGCCATACATATATCCTAATTTATGTATAGATGTAGGATAAAAAGCAAGTTTCAAAAACTTTAGATTTATTAAATACAAATTTATGTAGCCTCATGAGATCAGTAAATCTATACTTGTATGCTTAAACATAAACTTACTTGGAGTCAAAATGAAGTTAGGGAGTGATTGTCACATGCAAATTAGAAGAAGCATGAATAAGAAGGTAGCTTCTAGCAAAGCCTTTTTAGCCAAAGACTCATAAATGATGATACGCTTCAAGGTAATAATGTGCAATATTTTGAAATTGTGCAAGTAAGTGATTGTTATAGTTTCAGACATCAATTTGAAATAATAGGCTAAAGTGAGTTTAACTCAACAGTAATTGACATGTCTTACTTTCTTAGAAGTTGAAGGTTTGATCAACCCATCTCGTAGTTGTTGTACTAAAAAAAAATTGATAGATTTATGCATTTTTCATATGAAGAAACAAACTTCCAAACAAGGAAAATAAGAAATCAAATTACCCATTTTAATCATTTTTGAGTTGATGCGTTGTCCCCATCTGTTAAATTTAGGCATATCACATATGTACCTCAAACTCAAAAATAAAAAATAAAAAAATAAATGAAACCCCTCTTTAC

mRNA sequence

ATGGCTGTTTTGAGAGCTTGTTTTGGAATTTATGCTGCTGTGATTATTGCTGTCTTTTATGTTGTTACTTTGCCTGTATCTGCAGCTGAAATTTCCTCTTCTCCAGCTCCTGCCCCCACAAGTGATGAGTTGTTGGAATTGAATGTCCACCTTAAATTGGGAAAGTTGACTCCTCATTTGAATAGAAAACAGAACCACAATAGACCAAGGCATAGCATATGTTCTAATGCTGGTGGCTTTAGTGCTCACTTATATCATCCATTGATGCAACTTTTGAAAGCACCAAAAAAGCAGAAGAAGAATTAACAGAACATTCAATTCCAATTATGAATTGCATTATTTTCAAGTGTATGAGATGAAAGGAAGAGGGTGTGGTTGTTTCATTCAAATGGGTTATTCTATTGCCATTTTTTCTTTTCTTTTTTTTTGAAGATTGGCAGAGATTTCATTTGTAGAAGGAAAGCCTGTTGTACTTGTATTATAATTTATTTATATTTTTATCATTCTTTTTCTTGAATGATCATTATATTCCTGTGTGTATTCTTATCGTCCCAAACACCCCCACAAAAAGTTTTTAAAAGATTAACAATGTGGACTAAATTTAAGATTTATTGAAATGTAAGAATTAAAAGTGGACAATTGAAAGTATAAGAGCTAAAGACCAAACTTCAATATATAGGGACTCAAAATGGTATTTTAACGTTTATTTTTCTATAAAACTATATATAAACATATTTGACGATAGGATAGAAACACTTAAAACATTTATGAGGAGAAAAGAAGAATCAAAGGAACTCTATCTTCTTTCTAATAAAAAAGTTAAAAAAAAATGGAAAAAAAAAACTAGAAAGAAGCCATACATATATCCTAATTTATGTATAGATGTAGGATAAAAAGCAAGTTTCAAAAACTTTAGATTTATTAAATACAAATTTATGTAGCCTCATGAGATCAGTAAATCTATACTTGTATGCTTAAACATAAACTTACTTGGAGTCAAAATGAAGTTAGGGAGTGATTGTCACATGCAAATTAGAAGAAGCATGAATAAGAAGGTAGCTTCTAGCAAAGCCTTTTTAGCCAAAGACTCATAAATGATGATACGCTTCAAGGTAATAATGTGCAATATTTTGAAATTGTGCAAGTAAGTGATTGTTATAGTTTCAGACATCAATTTGAAATAATAGGCTAAAGTGAGTTTAACTCAACAGTAATTGACATGTCTTACTTTCTTAGAAGTTGAAGGTTTGATCAACCCATCTCGTAGTTGTTGTACTAAAAAAAAATTGATAGATTTATGCATTTTTCATATGAAGAAACAAACTTCCAAACAAGGAAAATAAGAAATCAAATTACCCATTTTAATCATTTTTGAGTTGATGCGTTGTCCCCATCTGTTAAATTTAGGCATATCACATATGTACCTCAAACTCAAAAATAAAAAATAAAAAAATAAATGAAACCCCTCTTTAC

Coding sequence (CDS)

ATGGCTGTTTTGAGAGCTTGTTTTGGAATTTATGCTGCTGTGATTATTGCTGTCTTTTATGTTGTTACTTTGCCTGTATCTGCAGCTGAAATTTCCTCTTCTCCAGCTCCTGCCCCCACAAGTGATGAGTTGTTGGAATTGAATGTCCACCTTAAATTGGGAAAGTTGACTCCTCATTTGAATAGAAAACAGAACCACAATAGACCAAGGCATAGCATATGTTCTAATGCTGGTGGCTTTAGTGCTCACTTATATCATCCATTGATGCAACTTTTGAAAGCACCAAAAAAGCAGAAGAAGAATTAA

Protein sequence

MAVLRACFGIYAAVIIAVFYVVTLPVSAAEISSSPAPAPTSDELLELNVHLKLGKLTPHLNRKQNHNRPRHSICSNAGGFSAHLYHPLMQLLKAPKKQKKN
Homology
[Close]
BLAST of Lsi05G000740 vs. ExPASy TrEMBL
Match: A0A5D3BTZ5 (Arabinogalactan peptide 22 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold11G00180 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 1.1e-07
Identity = 37/43 (86.05%), Postives = 41/43 (95.35%), Query Frame = 0 

Query: 1  MAVLRA-CFGIYAAVIIAVFYVVTLPVSAAEISSSPAPAPTSD 43
          MAVLRA CFGIYAAV+IAVFYV+ LPVS+AE+SSSPAPAPTSD
Sbjct: 1  MAVLRASCFGIYAAVLIAVFYVLALPVSSAELSSSPAPAPTSD 43

[Close]
BLAST of Lsi05G000740 vs. ExPASy TrEMBL
Match: A0A5A7U3P4 (Arabinogalactan peptide 22 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold175G00750 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 9.6e-07
Identity = 36/43 (83.72%), Postives = 40/43 (93.02%), Query Frame = 0 

Query: 1  MAVLRA-CFGIYAAVIIAVFYVVTLPVSAAEISSSPAPAPTSD 43
          MAVLRA CFGIYAAV+IAVFYV+ L VS+AE+SSSPAPAPTSD
Sbjct: 1  MAVLRASCFGIYAAVLIAVFYVLALSVSSAELSSSPAPAPTSD 43

[Close]
BLAST of Lsi05G000740 vs. ExPASy TrEMBL
Match: A0A1S3CNS5 (arabinogalactan peptide 22 OS=Cucumis melo OX=3656 GN=LOC103503022 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 9.6e-07
Identity = 36/43 (83.72%), Postives = 40/43 (93.02%), Query Frame = 0 

Query: 1  MAVLRA-CFGIYAAVIIAVFYVVTLPVSAAEISSSPAPAPTSD 43
          MAVLRA CFGIYAAV+IAVFYV+ L VS+AE+SSSPAPAPTSD
Sbjct: 1  MAVLRASCFGIYAAVLIAVFYVLALSVSSAELSSSPAPAPTSD 43

[Close]
BLAST of Lsi05G000740 vs. ExPASy TrEMBL
Match: A0A6J1G081 (arabinogalactan peptide 22-like OS=Cucurbita moschata OX=3662 GN=LOC111449506 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 1.6e-06
Identity = 36/42 (85.71%), Postives = 38/42 (90.48%), Query Frame = 0 

Query: 1  MAVLRACFGIYAAVIIAVFYVVTLPVSAAEISSSPAPAPTSD 43
          MAVLRACFGIY AVIIA+FYVV LPVS AE +SSPAPAPTSD
Sbjct: 1  MAVLRACFGIY-AVIIAIFYVVMLPVSRAEHASSPAPAPTSD 41

[Close]
BLAST of Lsi05G000740 vs. ExPASy TrEMBL
Match: A0A0A0L7T5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G355060 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 2.4e-05
Identity = 35/46 (76.09%), Postives = 41/46 (89.13%), Query Frame = 0 

Query: 1  MAVLRA-CFGIYAAVIIAVFYVVTLPVSAAEISSS---PAPAPTSD 43
          MAVLRA CFGIYAA++IAVFYVV LP+S+A++SSS   PAPAPTSD
Sbjct: 1  MAVLRASCFGIYAALLIAVFYVVALPLSSAQLSSSSPAPAPAPTSD 46

[Close]
BLAST of Lsi05G000740 vs. NCBI nr
Match: XP_038898060.1 (arabinogalactan protein 41-like [Benincasa hispida] >XP_038898069.1 arabinogalactan protein 41-like [Benincasa hispida])

HSP 1 Score: 73.6 bits (179), Expect = 1.1e-09
Identity = 40/42 (95.24%), Postives = 41/42 (97.62%), Query Frame = 0 

Query: 1  MAVLRACFGIYAAVIIAVFYVVTLPVSAAEISSSPAPAPTSD 43
          MAVL+ACFGIYAAVIIAVFYVVTLPVSAAE SSSPAPAPTSD
Sbjct: 1  MAVLKACFGIYAAVIIAVFYVVTLPVSAAEFSSSPAPAPTSD 42

[Close]
BLAST of Lsi05G000740 vs. NCBI nr
Match: TYK03143.1 (arabinogalactan peptide 22 [Cucumis melo var. makuwa])

HSP 1 Score: 65.9 bits (159), Expect = 2.4e-07
Identity = 37/43 (86.05%), Postives = 41/43 (95.35%), Query Frame = 0 

Query: 1  MAVLRA-CFGIYAAVIIAVFYVVTLPVSAAEISSSPAPAPTSD 43
          MAVLRA CFGIYAAV+IAVFYV+ LPVS+AE+SSSPAPAPTSD
Sbjct: 1  MAVLRASCFGIYAAVLIAVFYVLALPVSSAELSSSPAPAPTSD 43

[Close]
BLAST of Lsi05G000740 vs. NCBI nr
Match: XP_008465391.1 (PREDICTED: arabinogalactan peptide 22 [Cucumis melo] >KAA0050462.1 arabinogalactan peptide 22 [Cucumis melo var. makuwa])

HSP 1 Score: 62.8 bits (151), Expect = 2.0e-06
Identity = 36/43 (83.72%), Postives = 40/43 (93.02%), Query Frame = 0 

Query: 1  MAVLRA-CFGIYAAVIIAVFYVVTLPVSAAEISSSPAPAPTSD 43
          MAVLRA CFGIYAAV+IAVFYV+ L VS+AE+SSSPAPAPTSD
Sbjct: 1  MAVLRASCFGIYAAVLIAVFYVLALSVSSAELSSSPAPAPTSD 43

[Close]
BLAST of Lsi05G000740 vs. NCBI nr
Match: XP_022945187.1 (arabinogalactan peptide 22-like [Cucurbita moschata] >XP_023541894.1 arabinogalactan peptide 22-like [Cucurbita pepo subsp. pepo] >KAG7013292.1 Arabinogalactan peptide 22 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 62.0 bits (149), Expect = 3.4e-06
Identity = 36/42 (85.71%), Postives = 38/42 (90.48%), Query Frame = 0 

Query: 1  MAVLRACFGIYAAVIIAVFYVVTLPVSAAEISSSPAPAPTSD 43
          MAVLRACFGIY AVIIA+FYVV LPVS AE +SSPAPAPTSD
Sbjct: 1  MAVLRACFGIY-AVIIAIFYVVMLPVSRAEHASSPAPAPTSD 41

[Close]
BLAST of Lsi05G000740 vs. NCBI nr
Match: KGN57863.1 (hypothetical protein Csa_009896 [Cucumis sativus])

HSP 1 Score: 58.2 bits (139), Expect = 4.9e-05
Identity = 35/46 (76.09%), Postives = 41/46 (89.13%), Query Frame = 0 

Query: 1  MAVLRA-CFGIYAAVIIAVFYVVTLPVSAAEISSS---PAPAPTSD 43
          MAVLRA CFGIYAA++IAVFYVV LP+S+A++SSS   PAPAPTSD
Sbjct: 1  MAVLRASCFGIYAALLIAVFYVVALPLSSAQLSSSSPAPAPAPTSD 46

The following BLAST results are available for this feature:
BLAST of Lsi05G000740 vs.
Match NameE-valueIdentityDescription
BLAST of Lsi05G000740 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3BTZ51.1e-0786.05Arabinogalactan peptide 22 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaff... [more]
A0A5A7U3P49.6e-0783.72Arabinogalactan peptide 22 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaff... [more]
A0A1S3CNS59.6e-0783.72arabinogalactan peptide 22 OS=Cucumis melo OX=3656 GN=LOC103503022 PE=4 SV=1[more]
A0A6J1G0811.6e-0685.71arabinogalactan peptide 22-like OS=Cucurbita moschata OX=3662 GN=LOC111449506 PE... [more]
A0A0A0L7T52.4e-0576.09Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G355060 PE=4 SV=1[more]
BLAST of Lsi05G000740 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038898060.11.1e-0995.24arabinogalactan protein 41-like [Benincasa hispida] >XP_038898069.1 arabinogalac... [more]
TYK03143.12.4e-0786.05arabinogalactan peptide 22 [Cucumis melo var. makuwa][more]
XP_008465391.12.0e-0683.72PREDICTED: arabinogalactan peptide 22 [Cucumis melo] >KAA0050462.1 arabinogalact... [more]
XP_022945187.13.4e-0685.71arabinogalactan peptide 22-like [Cucurbita moschata] >XP_023541894.1 arabinogala... [more]
KGN57863.14.9e-0576.09hypothetical protein Csa_009896 [Cucumis sativus][more]
BLAST of Lsi05G000740 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi05G000740.1Lsi05G000740.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane