Lsi05G000320 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi05G000320
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	60S ribosomal protein L37a
Location	chr05: 555365 .. 556320 (-)
RNA-Seq Expression	Lsi05G000320
Synteny	Lsi05G000320

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ACCCGCTATGGTGCCAGTCTGAGAAAGCAGATAAAAAAGATGGAAGTCAGTCAGCACAGCAAATACTTCTGTGAGTTTTGTGGAAAGGCAAGTAGTTGTCCTCTCTTTTTGGCCCATGTTTTTGATTTCCTAATCACTTGTTCATGTTCCAATTATATTGTTCCCCATTGCAGTATGCAGTTAAGAGGAAGGCAGTTGGAATTTGGGGCTGCAAAGATTGTGGTAAAGTGAAAGCCGGTGGTGCCTACACTCTCAAGTAAGGCTACGTCTTTTTACTTTTCTTTGGTTTTTATTTCTTTTTCTAATTATTGTTCTTGTTATATAAATATAGGTTAAATTACAATTTAACCTTATAGTTTGAAAAAAGTTAGAATTTAGTCCTTACAGTTTGATAAAACCTTCCTAAAGTGCAGGGACTCTTATGAGGTTTTATCTAACCATAGGGACCATTTATGAGGTTTTATCACGCAATAAGAACTAAATTCTAACTTTTAAAACCACAAGGACTAAATTCTAATTTTCGTGAAACCATAGGAATCAAATTTGCCTTTTAATCATAGATATATTTGATTTTGATGTTATTTTTGGTAACTTTGACAGCACTGCTAGTGCTGTGACAGTGAGAAGCACTATTAGGAGGCTGAGAGAGCAGACTGAAAGTTAAGCCATCTTCATTGCCCAATTTTTGCCTTTTTTTCAAAAAGGAAAAAGATTACTATCTCTCTGGACTTCTCTTCATATCAATGTTGTAGGAATTGGTTATTAAAATTAATTGAAACTGATCCTTTTCTTCATTTCTTATACTGTTGGCCACTTTTCTATTGATTGTCAATCGAGTTTCATCCAAATTTACGTATTTGGCATCTAAGGTTGAAATAGATTAAATGAGTGATCTGCTTTTGTTTACAATACCTTTTTCAGATTACTAGGAGTTAATGTTATTGTCTACATCATAA

mRNA sequence

ACCCGCTATGGTGCCAGTCTGAGAAAGCAGATAAAAAAGATGGAAGTCAGTCAGCACAGCAAATACTTCTGTGAGTTTTGTGGAAAGGCAAGTAGTTGTCCTCTCTTTTTGGCCCATTATGCAGTTAAGAGGAAGGCAGTTGGAATTTGGGGCTGCAAAGATTGTGGTAAAGTGAAAGCCGGTGGTGCCTACACTCTCAACACTGCTAGTGCTGTGACAGTGAGAAGCACTATTAGGAGGCTGAGAGAGCAGACTGAAAGTTAAGCCATCTTCATTGCCCAATTTTTGCCTTTTTTTCAAAAAGGAAAAAGATTACTATCTCTCTGGACTTCTCTTCATATCAATGTTGTAGGAATTGGTTATTAAAATTAATTGAAACTGATCCTTTTCTTCATTTCTTATACTGTTGGCCACTTTTCTATTGATTGTCAATCGAGTTTCATCCAAATTTACGTATTTGGCATCTAAGGTTGAAATAGATTAAATGAGTGATCTGCTTTTGTTTACAATACCTTTTTCAGATTACTAGGAGTTAATGTTATTGTCTACATCATAA

Coding sequence (CDS)

ACCCGCTATGGTGCCAGTCTGAGAAAGCAGATAAAAAAGATGGAAGTCAGTCAGCACAGCAAATACTTCTGTGAGTTTTGTGGAAAGGCAAGTAGTTGTCCTCTCTTTTTGGCCCATTATGCAGTTAAGAGGAAGGCAGTTGGAATTTGGGGCTGCAAAGATTGTGGTAAAGTGAAAGCCGGTGGTGCCTACACTCTCAACACTGCTAGTGCTGTGACAGTGAGAAGCACTATTAGGAGGCTGAGAGAGCAGACTGAAAGTTAA

Protein sequence

TRYGASLRKQIKKMEVSQHSKYFCEFCGKASSCPLFLAHYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTES

Homology

[Close]

BLAST of Lsi05G000320 vs. ExPASy Swiss-Prot
Match: Q9XHE4 (60S ribosomal protein L37a OS=Gossypium hirsutum OX=3635 GN=RPL37A PE=3 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 2.0e-34
Identity = 76/87 (87.36%), Postives = 76/87 (87.36%), Query Frame = 0


Query: 1  TRYGASLRKQIKKMEVSQHSKYFCEFCGKASSCPLFLAHYAVKRKAVGIWGCKDCGKVKA 60
          TRYGASLRKQIKKMEVSQHSKYFCEFCGK          YAVKRKAVGIWGCK CGKVKA
Sbjct: 16 TRYGASLRKQIKKMEVSQHSKYFCEFCGK----------YAVKRKAVGIWGCKACGKVKA 75

Query: 61 GGAYTLNTASAVTVRSTIRRLREQTES 88
          GGAYTLNTASAVTVRSTIRRLREQTES
Sbjct: 76 GGAYTLNTASAVTVRSTIRRLREQTES 92

[Close]

BLAST of Lsi05G000320 vs. ExPASy Swiss-Prot
Match: P0DKK1 (60S ribosomal protein L37a-1 OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0679700 PE=1 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 2.6e-34
Identity = 74/87 (85.06%), Postives = 77/87 (88.51%), Query Frame = 0


Query: 1  TRYGASLRKQIKKMEVSQHSKYFCEFCGKASSCPLFLAHYAVKRKAVGIWGCKDCGKVKA 60
          TRYGASLRKQIKKMEVSQHSKYFCEFCGK          +AVKRKAVGIWGCKDCGKVKA
Sbjct: 16 TRYGASLRKQIKKMEVSQHSKYFCEFCGK----------FAVKRKAVGIWGCKDCGKVKA 75

Query: 61 GGAYTLNTASAVTVRSTIRRLREQTES 88
          GGAYT+NTASAVTVRSTIRRLREQTE+
Sbjct: 76 GGAYTMNTASAVTVRSTIRRLREQTEA 92

[Close]

BLAST of Lsi05G000320 vs. ExPASy Swiss-Prot
Match: P0DKK2 (60S ribosomal protein L37a-2 OS=Oryza sativa subsp. japonica OX=39947 GN=Os05g0557000 PE=1 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 2.6e-34
Identity = 74/87 (85.06%), Postives = 77/87 (88.51%), Query Frame = 0


Query: 1  TRYGASLRKQIKKMEVSQHSKYFCEFCGKASSCPLFLAHYAVKRKAVGIWGCKDCGKVKA 60
          TRYGASLRKQIKKMEVSQHSKYFCEFCGK          +AVKRKAVGIWGCKDCGKVKA
Sbjct: 16 TRYGASLRKQIKKMEVSQHSKYFCEFCGK----------FAVKRKAVGIWGCKDCGKVKA 75

Query: 61 GGAYTLNTASAVTVRSTIRRLREQTES 88
          GGAYT+NTASAVTVRSTIRRLREQTE+
Sbjct: 76 GGAYTMNTASAVTVRSTIRRLREQTEA 92

[Close]

BLAST of Lsi05G000320 vs. ExPASy Swiss-Prot
Match: Q9SRK6 (Putative 60S ribosomal protein L37a-1 OS=Arabidopsis thaliana OX=3702 GN=RPL37AB PE=3 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 5.9e-34
Identity = 73/87 (83.91%), Postives = 76/87 (87.36%), Query Frame = 0


Query: 1  TRYGASLRKQIKKMEVSQHSKYFCEFCGKASSCPLFLAHYAVKRKAVGIWGCKDCGKVKA 60
          TRYGASLRKQIKKMEVSQH+KYFCEFCGK          Y+VKRK VGIWGCKDCGKVKA
Sbjct: 16 TRYGASLRKQIKKMEVSQHNKYFCEFCGK----------YSVKRKVVGIWGCKDCGKVKA 75

Query: 61 GGAYTLNTASAVTVRSTIRRLREQTES 88
          GGAYT+NTASAVTVRSTIRRLREQTES
Sbjct: 76 GGAYTMNTASAVTVRSTIRRLREQTES 92

[Close]

BLAST of Lsi05G000320 vs. ExPASy Swiss-Prot
Match: Q9ZRS8 (60S ribosomal protein L37a OS=Pseudotsuga menziesii OX=3357 GN=RPL37A PE=3 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 1.7e-33
Identity = 73/86 (84.88%), Postives = 75/86 (87.21%), Query Frame = 0


Query: 1  TRYGASLRKQIKKMEVSQHSKYFCEFCGKASSCPLFLAHYAVKRKAVGIWGCKDCGKVKA 60
          TRYGASLRKQIKKMEVSQHSK+FCEFCGK          +AVKRKAVGIWGCKDCGKVKA
Sbjct: 16 TRYGASLRKQIKKMEVSQHSKFFCEFCGK----------FAVKRKAVGIWGCKDCGKVKA 75

Query: 61 GGAYTLNTASAVTVRSTIRRLREQTE 87
          GGAYTLNT SAVTVRSTIRRLREQTE
Sbjct: 76 GGAYTLNTPSAVTVRSTIRRLREQTE 91

[Close]

BLAST of Lsi05G000320 vs. ExPASy TrEMBL
Match: A0A103XDD5 (Uncharacterized protein OS=Cynara cardunculus var. scolymus OX=59895 GN=Ccrd_026305 PE=3 SV=1)

HSP 1 Score: 152.9 bits (385), Expect = 6.1e-34
Identity = 78/91 (85.71%), Postives = 79/91 (86.81%), Query Frame = 0


Query: 1   TRYGASLRKQIKKMEVSQHSKYFCEFCGK----ASSCPLFLAHYAVKRKAVGIWGCKDCG 60
           TRYGASLRKQIKKMEVSQHSKYFCEFCGK     + C      YAVKRKAVGIWGCKDCG
Sbjct: 50  TRYGASLRKQIKKMEVSQHSKYFCEFCGKLRKRINFCKCVFFRYAVKRKAVGIWGCKDCG 109

Query: 61  KVKAGGAYTLNTASAVTVRSTIRRLREQTES 88
           KVKAGGAYTLNTASAVTVRSTIRRLREQTES
Sbjct: 110 KVKAGGAYTLNTASAVTVRSTIRRLREQTES 140

[Close]

BLAST of Lsi05G000320 vs. ExPASy TrEMBL
Match: A0A200Q8W6 (Ribosomal protein L37ae OS=Macleaya cordata OX=56857 GN=BVC80_497g29 PE=3 SV=1)

HSP 1 Score: 151.4 bits (381), Expect = 1.8e-33
Identity = 77/86 (89.53%), Postives = 79/86 (91.86%), Query Frame = 0


Query: 1  TRYGASLRKQIKKMEVSQHSKYFCEFCGKASSCPLFLAHYAVKRKAVGIWGCKDCGKVKA 60
          TRYGASLRKQIKKMEVSQH+KYFCEFCGKAS       +YAVKRKAVGIWGCKDCGKVKA
Sbjct: 16 TRYGASLRKQIKKMEVSQHAKYFCEFCGKASH--FSHPYYAVKRKAVGIWGCKDCGKVKA 75

Query: 61 GGAYTLNTASAVTVRSTIRRLREQTE 87
          GGAYTLNTASAVTVRSTIRRLREQTE
Sbjct: 76 GGAYTLNTASAVTVRSTIRRLREQTE 99

[Close]

BLAST of Lsi05G000320 vs. ExPASy TrEMBL
Match: A0A6A5MJL7 (Uncharacterized protein (Fragment) OS=Lupinus albus OX=3870 GN=Lal_00027465 PE=3 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 3.0e-33
Identity = 75/86 (87.21%), Postives = 76/86 (88.37%), Query Frame = 0


Query: 1   TRYGASLRKQIKKMEVSQHSKYFCEFCGKASSCPLFLAHYAVKRKAVGIWGCKDCGKVKA 60
           TRYGASLRKQIKKMEVSQHSK+FCEFCGK          YAVKRKAVGIWGCKDCGKVKA
Sbjct: 81  TRYGASLRKQIKKMEVSQHSKFFCEFCGKVGLSFFVNVEYAVKRKAVGIWGCKDCGKVKA 140

Query: 61  GGAYTLNTASAVTVRSTIRRLREQTE 87
           GGAYTLNTASAVTVRSTIRRLREQTE
Sbjct: 141 GGAYTLNTASAVTVRSTIRRLREQTE 166

[Close]

BLAST of Lsi05G000320 vs. ExPASy TrEMBL
Match: A0A1U7XSD1 (60S ribosomal protein L37a OS=Nicotiana sylvestris OX=4096 GN=LOC104239566 PE=3 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 8.8e-33
Identity = 77/87 (88.51%), Postives = 77/87 (88.51%), Query Frame = 0


Query: 1  TRYGASLRKQIKKMEVSQHSKYFCEFCGKASSCPLFLAHYAVKRKAVGIWGCKDCGKVKA 60
          TRYGASLRKQIKKMEVSQHSKYFCEFCGK          YAVKRKAVGIWGCKDCGKVKA
Sbjct: 16 TRYGASLRKQIKKMEVSQHSKYFCEFCGK----------YAVKRKAVGIWGCKDCGKVKA 75

Query: 61 GGAYTLNTASAVTVRSTIRRLREQTES 88
          GGAYTLNTASAVTVRSTIRRLREQTES
Sbjct: 76 GGAYTLNTASAVTVRSTIRRLREQTES 92

[Close]

BLAST of Lsi05G000320 vs. ExPASy TrEMBL
Match: A0A6J1ICH2 (60S ribosomal protein L37a OS=Cucurbita maxima OX=3661 GN=LOC111471808 PE=3 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 8.8e-33
Identity = 77/87 (88.51%), Postives = 77/87 (88.51%), Query Frame = 0


Query: 1  TRYGASLRKQIKKMEVSQHSKYFCEFCGKASSCPLFLAHYAVKRKAVGIWGCKDCGKVKA 60
          TRYGASLRKQIKKMEVSQHSKYFCEFCGK          YAVKRKAVGIWGCKDCGKVKA
Sbjct: 16 TRYGASLRKQIKKMEVSQHSKYFCEFCGK----------YAVKRKAVGIWGCKDCGKVKA 75

Query: 61 GGAYTLNTASAVTVRSTIRRLREQTES 88
          GGAYTLNTASAVTVRSTIRRLREQTES
Sbjct: 76 GGAYTLNTASAVTVRSTIRRLREQTES 92

[Close]

BLAST of Lsi05G000320 vs. NCBI nr
Match: KVH88611.1 (hypothetical protein Ccrd_026305 [Cynara cardunculus var. scolymus])

HSP 1 Score: 152.9 bits (385), Expect = 1.3e-33
Identity = 78/91 (85.71%), Postives = 79/91 (86.81%), Query Frame = 0


Query: 1   TRYGASLRKQIKKMEVSQHSKYFCEFCGK----ASSCPLFLAHYAVKRKAVGIWGCKDCG 60
           TRYGASLRKQIKKMEVSQHSKYFCEFCGK     + C      YAVKRKAVGIWGCKDCG
Sbjct: 50  TRYGASLRKQIKKMEVSQHSKYFCEFCGKLRKRINFCKCVFFRYAVKRKAVGIWGCKDCG 109

Query: 61  KVKAGGAYTLNTASAVTVRSTIRRLREQTES 88
           KVKAGGAYTLNTASAVTVRSTIRRLREQTES
Sbjct: 110 KVKAGGAYTLNTASAVTVRSTIRRLREQTES 140

[Close]

BLAST of Lsi05G000320 vs. NCBI nr
Match: OVA06874.1 (Ribosomal protein L37ae [Macleaya cordata])

HSP 1 Score: 151.4 bits (381), Expect = 3.7e-33
Identity = 77/86 (89.53%), Postives = 79/86 (91.86%), Query Frame = 0


Query: 1  TRYGASLRKQIKKMEVSQHSKYFCEFCGKASSCPLFLAHYAVKRKAVGIWGCKDCGKVKA 60
          TRYGASLRKQIKKMEVSQH+KYFCEFCGKAS       +YAVKRKAVGIWGCKDCGKVKA
Sbjct: 16 TRYGASLRKQIKKMEVSQHAKYFCEFCGKASH--FSHPYYAVKRKAVGIWGCKDCGKVKA 75

Query: 61 GGAYTLNTASAVTVRSTIRRLREQTE 87
          GGAYTLNTASAVTVRSTIRRLREQTE
Sbjct: 76 GGAYTLNTASAVTVRSTIRRLREQTE 99

[Close]

BLAST of Lsi05G000320 vs. NCBI nr
Match: KAF7137563.1 (hypothetical protein RHSIM_Rhsim07G0119700 [Rhododendron simsii])

HSP 1 Score: 151.4 bits (381), Expect = 3.7e-33
Identity = 77/89 (86.52%), Postives = 78/89 (87.64%), Query Frame = 0


Query: 1    TRYGASLRKQIKKMEVSQHSKYFCEFCGKASSCPLFL--AHYAVKRKAVGIWGCKDCGKV 60
            TRYGASLRKQIKKMEVSQHSKYFCEFCGK       +    YAVKRKAVGIWGCKDCGKV
Sbjct: 1556 TRYGASLRKQIKKMEVSQHSKYFCEFCGKCGGANQIVNCLQYAVKRKAVGIWGCKDCGKV 1615

Query: 61   KAGGAYTLNTASAVTVRSTIRRLREQTES 88
            KAGGAYTLNTASAVTVRSTIRRLREQTES
Sbjct: 1616 KAGGAYTLNTASAVTVRSTIRRLREQTES 1644

[Close]

BLAST of Lsi05G000320 vs. NCBI nr
Match: KAF1873427.1 (hypothetical protein Lal_00027465, partial [Lupinus albus])

HSP 1 Score: 150.6 bits (379), Expect = 6.3e-33
Identity = 75/86 (87.21%), Postives = 76/86 (88.37%), Query Frame = 0


Query: 1   TRYGASLRKQIKKMEVSQHSKYFCEFCGKASSCPLFLAHYAVKRKAVGIWGCKDCGKVKA 60
           TRYGASLRKQIKKMEVSQHSK+FCEFCGK          YAVKRKAVGIWGCKDCGKVKA
Sbjct: 81  TRYGASLRKQIKKMEVSQHSKFFCEFCGKVGLSFFVNVEYAVKRKAVGIWGCKDCGKVKA 140

Query: 61  GGAYTLNTASAVTVRSTIRRLREQTE 87
           GGAYTLNTASAVTVRSTIRRLREQTE
Sbjct: 141 GGAYTLNTASAVTVRSTIRRLREQTE 166

[Close]

BLAST of Lsi05G000320 vs. NCBI nr
Match: RXI00911.1 (hypothetical protein DVH24_001145 [Malus domestica] >TQD91193.1 hypothetical protein C1H46_023207 [Malus baccata])

HSP 1 Score: 149.1 bits (375), Expect = 1.8e-32
Identity = 77/87 (88.51%), Postives = 77/87 (88.51%), Query Frame = 0


Query: 1  TRYGASLRKQIKKMEVSQHSKYFCEFCGKASSCPLFLAHYAVKRKAVGIWGCKDCGKVKA 60
          TRYGASLRKQIKKMEVSQHSKYFCEFCGK          YAVKRKAVGIWGCKDCGKVKA
Sbjct: 21 TRYGASLRKQIKKMEVSQHSKYFCEFCGK----------YAVKRKAVGIWGCKDCGKVKA 80

Query: 61 GGAYTLNTASAVTVRSTIRRLREQTES 88
          GGAYTLNTASAVTVRSTIRRLREQTES
Sbjct: 81 GGAYTLNTASAVTVRSTIRRLREQTES 97

[Close]

BLAST of Lsi05G000320 vs. TAIR 10
Match: AT3G10950.1 (Zinc-binding ribosomal protein family protein )

HSP 1 Score: 144.4 bits (363), Expect = 4.2e-35
Identity = 73/87 (83.91%), Postives = 76/87 (87.36%), Query Frame = 0


Query: 1  TRYGASLRKQIKKMEVSQHSKYFCEFCGKASSCPLFLAHYAVKRKAVGIWGCKDCGKVKA 60
          TRYGASLRKQIKKMEVSQH+KYFCEFCGK          Y+VKRK VGIWGCKDCGKVKA
Sbjct: 16 TRYGASLRKQIKKMEVSQHNKYFCEFCGK----------YSVKRKVVGIWGCKDCGKVKA 75

Query: 61 GGAYTLNTASAVTVRSTIRRLREQTES 88
          GGAYT+NTASAVTVRSTIRRLREQTES
Sbjct: 76 GGAYTMNTASAVTVRSTIRRLREQTES 92

[Close]

BLAST of Lsi05G000320 vs. TAIR 10
Match: AT3G60245.1 (Zinc-binding ribosomal protein family protein )

HSP 1 Score: 142.5 bits (358), Expect = 1.6e-34
Identity = 72/86 (83.72%), Postives = 74/86 (86.05%), Query Frame = 0


Query: 1  TRYGASLRKQIKKMEVSQHSKYFCEFCGKASSCPLFLAHYAVKRKAVGIWGCKDCGKVKA 60
          TRYGAS+RKQIKKMEVSQHSKYFCEFCGK          Y VKRKAVGIWGCKDCGKVKA
Sbjct: 16 TRYGASIRKQIKKMEVSQHSKYFCEFCGK----------YGVKRKAVGIWGCKDCGKVKA 75

Query: 61 GGAYTLNTASAVTVRSTIRRLREQTE 87
          GGAYT+NTASAVTVRSTIRRLREQ E
Sbjct: 76 GGAYTMNTASAVTVRSTIRRLREQIE 91

The following BLAST results are available for this feature:

BLAST of Lsi05G000320 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9XHE4	2.0e-34	87.36	60S ribosomal protein L37a OS=Gossypium hirsutum OX=3635 GN=RPL37A PE=3 SV=1	[more]
P0DKK1	2.6e-34	85.06	60S ribosomal protein L37a-1 OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g06...	[more]
P0DKK2	2.6e-34	85.06	60S ribosomal protein L37a-2 OS=Oryza sativa subsp. japonica OX=39947 GN=Os05g05...	[more]
Q9SRK6	5.9e-34	83.91	Putative 60S ribosomal protein L37a-1 OS=Arabidopsis thaliana OX=3702 GN=RPL37AB...	[more]
Q9ZRS8	1.7e-33	84.88	60S ribosomal protein L37a OS=Pseudotsuga menziesii OX=3357 GN=RPL37A PE=3 SV=1	[more]

BLAST of Lsi05G000320 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A103XDD5	6.1e-34	85.71	Uncharacterized protein OS=Cynara cardunculus var. scolymus OX=59895 GN=Ccrd_026...	[more]
A0A200Q8W6	1.8e-33	89.53	Ribosomal protein L37ae OS=Macleaya cordata OX=56857 GN=BVC80_497g29 PE=3 SV=1	[more]
A0A6A5MJL7	3.0e-33	87.21	Uncharacterized protein (Fragment) OS=Lupinus albus OX=3870 GN=Lal_00027465 PE=3...	[more]
A0A1U7XSD1	8.8e-33	88.51	60S ribosomal protein L37a OS=Nicotiana sylvestris OX=4096 GN=LOC104239566 PE=3 ...	[more]
A0A6J1ICH2	8.8e-33	88.51	60S ribosomal protein L37a OS=Cucurbita maxima OX=3661 GN=LOC111471808 PE=3 SV=1	[more]

BLAST of Lsi05G000320 vs. NCBI nr


Match Name	E-value	Identity	Description
KVH88611.1	1.3e-33	85.71	hypothetical protein Ccrd_026305 [Cynara cardunculus var. scolymus]	[more]
OVA06874.1	3.7e-33	89.53	Ribosomal protein L37ae [Macleaya cordata]	[more]
KAF7137563.1	3.7e-33	86.52	hypothetical protein RHSIM_Rhsim07G0119700 [Rhododendron simsii]	[more]
KAF1873427.1	6.3e-33	87.21	hypothetical protein Lal_00027465, partial [Lupinus albus]	[more]
RXI00911.1	1.8e-32	88.51	hypothetical protein DVH24_001145 [Malus domestica] >TQD91193.1 hypothetical pro...	[more]

BLAST of Lsi05G000320 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G10950.1	4.2e-35	83.91	Zinc-binding ribosomal protein family protein	[more]
AT3G60245.1	1.6e-34	83.72	Zinc-binding ribosomal protein family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002674	Ribosomal protein L37ae	PFAM	PF01780	Ribosomal_L37ae	coord: 1..83 e-value: 1.1E-27 score: 95.9
IPR011331	Ribosomal protein L37ae/L37e	GENE3D	2.20.25.30		coord: 1..87 e-value: 5.3E-34 score: 118.2
None	No IPR available	PANTHER	PTHR48149	60S RIBOSOMAL PROTEIN L37A-2	coord: 1..87
None	No IPR available	PANTHER	PTHR48149:SF2	60S RIBOSOMAL PROTEIN L37A	coord: 1..87
IPR011332	Zinc-binding ribosomal protein	SUPERFAMILY	57829	Zn-binding ribosomal proteins	coord: 1..77

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi05G000320.1	Lsi05G000320.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0022626	cytosolic ribosome
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome