Lsi04G023920 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi04G023920
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
DescriptionUnknown protein
Locationchr04: 31049768 .. 31052712 (+)
RNA-Seq ExpressionLsi04G023920
SyntenyLsi04G023920
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AATTATTAAAAACAACGAGACAGAGAGACAGAAGAACAATCTTTTTCCTTTTTACGTTCTCGCCATCGATTTCTTCAAATTCTCATCTTCAAGCTGCGCTCTTCATCATCATTCTTCTTCCAATTTTCCCTTTCACCATACTTCGTCTCGTTCAAGCTTCAATTTTTTTTGTTCTCAGGGTCATAGCTTCTCTTATTCATTCTTCAGCTCGCTGAGATTAAGACGGAATTTGATTGCTACTGTCAAAATTGAATAATTGTTTCTACCAGCTGCGATTTCCATTTACGACCTCGATACCTCCGTCAACCGTTGCAGCCAGCATCGGAGACGGTGTCGAATTCTGAAGCAGAAGAATGAGGCAGTCGCCGGACTTCGGAGACGATTACGCCCATGGAACTCACATCCAGTCCTTTTCGTCGGCTTCGCTCTTCCCTTCTTCTTCTCGCAGAGATGTTTATTACAGGTTCAATCTAACCTCTGCCTTCTATCTCACTGTGTAGTGAATTTTTTGTTCTTCAGATATCTGTTTATATACTGTACGGGCTTCTGAATCTCTTTTTGTTTTTTTGTTTTTTGTTCTGATTGGAGGGTTGGGTGGAATTGTCTGATTTATGTGACGGGTTGGGGACTATCTTTTGGTTTGTACATTACTTGAATCGATTTCGAAAATCGTGATTGCTTCTTGAGTACGATGTGATCCTGAGTGCTTTTGGTGAAAGATTGTTTGGAACTTTGGGTTGGGTTACATTGGACTGTAGTCGAGGGGAATTCAGCATATTTTAGTGTTGAAAAGAGAAGAAAAAGGAGTTTTCTGTGTTCATATTGGAATTGGAGAACTGTCAATAGCTGTAATAGAGCAGAACCGTAGGGCACTGACTGGTCTGACCTGTTTAAGAAATTCTCGTAGTTATTAGCTTGAAGGAGATGGCTATTGTGTTTTTTGACTTTGATGAATTTATTTAAAACAACTGTAGGGGAACTCCGTTTAGCATTGAAGGAGATGGATTTGTTGATTTAGATTGAAACTTTACCTATTTGTGAACTTCCATCATAACAATAATGAACTCTGACATGTGGCTGATTTGGTGTGTATATTGCATTTCCTTCTTTTTCTTATTTGAAACTCTTCCCTCTGCTCTCTCTGGTAGCTATTCATTAATTTTTCTCACGTTTCATGATGAGAAAGAGAGGAACAACTACCCAATGGTGCTTTTATGAAATAGCTTTTAACTAATAGGGGCCAAGCCCGTCTTGACAATATCAAACTTAAAATCTGCTCTCAGTTGCTCTTTCTAGTGGAGAGGCAATTTTTTCATATTCAATTAAAAACAAATGTAGTAGTAAACATATATTTGATCCAAGACTCAGAGGGATGTGAGATGTCCGAAGACGATGAGAAAGAGAATTCGACTTGAACTCTCCAATAACTCCTTGAAAATGCCTGAGACTGATCCAGATAACAAATCAATTAGTCATGAACCTGCCCTCATATCATGACACCTTGTAGCAAATCCTGTTTCTAGGAGAAATGAAGTTGGTAAAATCTTATCCTCAACCTTAGGTAAATTGACCCTGTGGAACATAAAGATTGAGACAAAGCAAAGGACAATTTTTATGATAAAAATAATTAGCGGCTGTTAAGAACTGTCACATCAAGTCCTTTGCAGCCATTGAGTTCAGACTTCAGAGTACTATGGCTACTCATGAAATTGGAAACCTTGACATGTGATTGTGGGGATTTTTTTTAATTTATTTATTTTTTATTATTATTATTATTATTATTATTATTATTATTTTGTGATTGTGGGGATTCAAGTAGCTTGATGTTTGTTCAGAATTGAAAATGCTTTATTATTATCTAATTTTGTATGAATCATCCTGAAATATATATACCCAAGATCGGTTTTTTCAAGCACAAATTTTGATGGGGCCAACAATGTGTTGCCCTAGAGTAGGGAATCCTCCAAATCCTTATTTTCTTAGTTGGCCCCTAAATGGGAAGCTAACCTAAAAAGGGAGTTCTAGTACCATTCCCATGGCTATACCTAGCATTCTCATCAACTAAGCCACCTCTATGTATTCTTTGCATTTCCTATATGCTTTCTGGTCAACTTGTAATGACAATGGTTTATTTCATACAGTTGTGGGGCCTGTGGATACGAACTGAACTTGAGCTCTGTTAACCGCAATACTTCGACCATTGGCTCTAAATATGGTAAATCGATAAAGCGAGGGATCATATCATTTCTAAACATCGACGAAAGCAGATTTACGCAGGTTGATGAACTTCAATGTGTGCCTCATTTCTCAAAGAACTCTTGGGGTCTGTTTCGTCGAAGAATCAAACTACTGTGTCGAAAGTGTGGAAACCATATTGGAAATGCTCACAGTAGCCATTCTTCCTCCACCCCACTTGTTTCAGATGGATCAGATTCATCCTTGCCCAATGAAGTCTCTAAGTGCATGAAATATGAAGTAAAAATTCGTGCTTTACAACCCTCATCTTCCAACGAATTTGGTACCACAGTTATTTAAACAAGGACCCGGATTTATCGACTGAATGGCTCTTTCGAGCTAAATGAATTGCCTAACAGCAACAAATGCAGGATTCTCGATATGTTTGCTATGTTTTTACTTGTGAATAGAATCGGGTCTCAAATGGAAGGAAAGTGTAATTGAAAGGGTTCCACAGTTATTGTTCTTGCAAAATGGAAAGTATGATTTATACGAGTGAATTGTTTCAAAGCTACTGATGTTTCCTGGTTTGTTTTTCATCATTTTCGTTTTGGTTAAAAAATATTTTGGCCCGAACTTTTATGAAAGTAACAATTTTGACTCTGAACTATAGTTGATAATAATGGAGTCTTTGTACTTTTAAGTTTATAACAATTTAGTTCTTAAACTTTAATAAATAATAGTTTAGTCTTGTACTACATTACTTTTAA

mRNA sequence

AATTATTAAAAACAACGAGACAGAGAGACAGAAGAACAATCTTTTTCCTTTTTACGTTCTCGCCATCGATTTCTTCAAATTCTCATCTTCAAGCTGCGCTCTTCATCATCATTCTTCTTCCAATTTTCCCTTTCACCATACTTCGTCTCGTTCAAGCTTCAATTTTTTTTGTTCTCAGGGTCATAGCTTCTCTTATTCATTCTTCAGCTCGCTGAGATTAAGACGGAATTTGATTGCTACTGTCAAAATTGAATAATTGTTTCTACCAGCTGCGATTTCCATTTACGACCTCGATACCTCCGTCAACCGTTGCAGCCAGCATCGGAGACGGTGTCGAATTCTGAAGCAGAAGAATGAGGCAGTCGCCGGACTTCGGAGACGATTACGCCCATGGAACTCACATCCAGTCCTTTTCGTCGGCTTCGCTCTTCCCTTCTTCTTCTCGCAGAGATGTTTATTACAGTTGTGGGGCCTGTGGATACGAACTGAACTTGAGCTCTGTTAACCGCAATACTTCGACCATTGGCTCTAAATATGGTAAATCGATAAAGCGAGGGATCATATCATTTCTAAACATCGACGAAAGCAGATTTACGCAGGTTGATGAACTTCAATGTGTGCCTCATTTCTCAAAGAACTCTTGGGGTCTGTTTCGTCGAAGAATCAAACTACTGTGTCGAAAGTGTGGAAACCATATTGGAAATGCTCACAGTAGCCATTCTTCCTCCACCCCACTTGTTTCAGATGGATCAGATTCATCCTTGCCCAATGAAGTCTCTAAGTGCATGAAATATGAAGTAAAAATTCGTGCTTTACAACCCTCATCTTCCAACGAATTTGGTACCACAGTTATTTAAACAAGGACCCGGATTTATCGACTGAATGGCTCTTTCGAGCTAAATGAATTGCCTAACAGCAACAAATGCAGGATTCTCGATATGTTTGCTATGTTTTTACTTGTGAATAGAATCGGGTCTCAAATGGAAGGAAAGTGTAATTGAAAGGGTTCCACAGTTATTGTTCTTGCAAAATGGAAAGTATGATTTATACGAGTGAATTGTTTCAAAGCTACTGATGTTTCCTGGTTTGTTTTTCATCATTTTCGTTTTGGTTAAAAAATATTTTGGCCCGAACTTTTATGAAAGTAACAATTTTGACTCTGAACTATAGTTGATAATAATGGAGTCTTTGTACTTTTAAGTTTATAACAATTTAGTTCTTAAACTTTAATAAATAATAGTTTAGTCTTGTACTACATTACTTTTAA

Coding sequence (CDS)

ATGAGGCAGTCGCCGGACTTCGGAGACGATTACGCCCATGGAACTCACATCCAGTCCTTTTCGTCGGCTTCGCTCTTCCCTTCTTCTTCTCGCAGAGATGTTTATTACAGTTGTGGGGCCTGTGGATACGAACTGAACTTGAGCTCTGTTAACCGCAATACTTCGACCATTGGCTCTAAATATGGTAAATCGATAAAGCGAGGGATCATATCATTTCTAAACATCGACGAAAGCAGATTTACGCAGGTTGATGAACTTCAATGTGTGCCTCATTTCTCAAAGAACTCTTGGGGTCTGTTTCGTCGAAGAATCAAACTACTGTGTCGAAAGTGTGGAAACCATATTGGAAATGCTCACAGTAGCCATTCTTCCTCCACCCCACTTGTTTCAGATGGATCAGATTCATCCTTGCCCAATGAAGTCTCTAAGTGCATGAAATATGAAGTAAAAATTCGTGCTTTACAACCCTCATCTTCCAACGAATTTGGTACCACAGTTATTTAA

Protein sequence

MRQSPDFGDDYAHGTHIQSFSSASLFPSSSRRDVYYSCGACGYELNLSSVNRNTSTIGSKYGKSIKRGIISFLNIDESRFTQVDELQCVPHFSKNSWGLFRRRIKLLCRKCGNHIGNAHSSHSSSTPLVSDGSDSSLPNEVSKCMKYEVKIRALQPSSSNEFGTTVI
Homology
[Close]
BLAST of Lsi04G023920 vs. ExPASy Swiss-Prot
Match: Q9STN5 (Uncharacterized protein At4g08330, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At4g08330 PE=1 SV=1)

HSP 1 Score: 178.3 bits (451), Expect = 7.1e-44
Identity = 91/141 (64.54%), Postives = 107/141 (75.89%), Query Frame = 0 

Query: 19  SFSSASLFPSSSRRDVYYSCGACGYELNLSSVNRNTSTIGSKYGKSIKRGIISFLNIDES 78
           SFSS+S   SSS R V YSCG+CGYELNLSS NR TSTIGSKYGKS+K GIISF NIDE 
Sbjct: 23  SFSSSS--SSSSMRHVNYSCGSCGYELNLSSTNRITSTIGSKYGKSMKSGIISFFNIDEG 82

Query: 79  RFTQVDELQCVPHFSKNSWGLFRRRIKLLCRKCGNHIGNAHSSHSSSTPLVSDGSDSSLP 138
           RF+QVDE QC+PHFS+ SWGLFR R KLLCRKC N+IGNA    +    LV+  SD + P
Sbjct: 83  RFSQVDEFQCMPHFSRYSWGLFRHRTKLLCRKCNNYIGNASQEKAPEYALVTQNSDPTSP 142

Query: 139 NEVSKCMKYEVKIRALQPSSS 160
             +    KY+++IR+LQPSS+
Sbjct: 143 -RIGSVTKYDIRIRSLQPSSA 160

[Close]
BLAST of Lsi04G023920 vs. ExPASy TrEMBL
Match: A0A5D3D741 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1493G00930 PE=4 SV=1)

HSP 1 Score: 316.6 bits (810), Expect = 6.1e-83
Identity = 155/168 (92.26%), Postives = 164/168 (97.62%), Query Frame = 0 

Query: 1   MRQSPDFGDDYAHGTHIQSFSSASLFPSSSRRDVYYSCGACGYELNLSSVNRNTSTIGSK 60
           MRQSP FGDDYAHGTHIQSFSSASLFPSSSRRDVYYSCGACGYELNLSS+NRNTSTIGSK
Sbjct: 1   MRQSPVFGDDYAHGTHIQSFSSASLFPSSSRRDVYYSCGACGYELNLSSINRNTSTIGSK 60

Query: 61  YGKSIKRGIISFLNIDESRFTQVDELQCVPHFSKNSWGLFRRRIKLLCRKCGNHIGNAHS 120
           YGKSIKRGIISFLNIDESRFTQVDELQCVPHFSKNSWGLFRRRIKLLCRKCGN+IGNAHS
Sbjct: 61  YGKSIKRGIISFLNIDESRFTQVDELQCVPHFSKNSWGLFRRRIKLLCRKCGNYIGNAHS 120

Query: 121 SHSSSTPLVSDGSD-SSLPNEVSKCMKYEVKIRALQPSSSNEFGTTVI 168
           +H++S+PLVSDGSD SSLPNEVS+CMKYEVKIRALQPSSSNEF  ++I
Sbjct: 121 NHTASSPLVSDGSDSSSLPNEVSRCMKYEVKIRALQPSSSNEFEPSII 168

[Close]
BLAST of Lsi04G023920 vs. ExPASy TrEMBL
Match: A0A1S3B9P1 (uncharacterized protein At4g08330, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103487585 PE=4 SV=1)

HSP 1 Score: 316.6 bits (810), Expect = 6.1e-83
Identity = 155/168 (92.26%), Postives = 164/168 (97.62%), Query Frame = 0 

Query: 1   MRQSPDFGDDYAHGTHIQSFSSASLFPSSSRRDVYYSCGACGYELNLSSVNRNTSTIGSK 60
           MRQSP FGDDYAHGTHIQSFSSASLFPSSSRRDVYYSCGACGYELNLSS+NRNTSTIGSK
Sbjct: 1   MRQSPVFGDDYAHGTHIQSFSSASLFPSSSRRDVYYSCGACGYELNLSSINRNTSTIGSK 60

Query: 61  YGKSIKRGIISFLNIDESRFTQVDELQCVPHFSKNSWGLFRRRIKLLCRKCGNHIGNAHS 120
           YGKSIKRGIISFLNIDESRFTQVDELQCVPHFSKNSWGLFRRRIKLLCRKCGN+IGNAHS
Sbjct: 61  YGKSIKRGIISFLNIDESRFTQVDELQCVPHFSKNSWGLFRRRIKLLCRKCGNYIGNAHS 120

Query: 121 SHSSSTPLVSDGSD-SSLPNEVSKCMKYEVKIRALQPSSSNEFGTTVI 168
           +H++S+PLVSDGSD SSLPNEVS+CMKYEVKIRALQPSSSNEF  ++I
Sbjct: 121 NHTASSPLVSDGSDSSSLPNEVSRCMKYEVKIRALQPSSSNEFEPSII 168

[Close]
BLAST of Lsi04G023920 vs. ExPASy TrEMBL
Match: A0A0A0L375 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G363480 PE=4 SV=1)

HSP 1 Score: 316.2 bits (809), Expect = 8.0e-83
Identity = 154/168 (91.67%), Postives = 164/168 (97.62%), Query Frame = 0 

Query: 1   MRQSPDFGDDYAHGTHIQSFSSASLFPSSSRRDVYYSCGACGYELNLSSVNRNTSTIGSK 60
           MRQSP FGDDYAHGTH+QSFSSASLFPSSSRRDVYYSCGACGYELNLSS+NRNTSTIGSK
Sbjct: 1   MRQSPVFGDDYAHGTHVQSFSSASLFPSSSRRDVYYSCGACGYELNLSSINRNTSTIGSK 60

Query: 61  YGKSIKRGIISFLNIDESRFTQVDELQCVPHFSKNSWGLFRRRIKLLCRKCGNHIGNAHS 120
           YGKSIKRGIISFLNIDESRFTQVDELQCVPHFSKNSWGLFRRRIKLLCRKCGN+IGNAHS
Sbjct: 61  YGKSIKRGIISFLNIDESRFTQVDELQCVPHFSKNSWGLFRRRIKLLCRKCGNYIGNAHS 120

Query: 121 SHSSSTPLVSDGSD-SSLPNEVSKCMKYEVKIRALQPSSSNEFGTTVI 168
           +H++S+PLVSDGSD SSLPNEVS+CMKYEVKIRALQPSSSNEF  ++I
Sbjct: 121 NHTASSPLVSDGSDSSSLPNEVSRCMKYEVKIRALQPSSSNEFEPSII 168

[Close]
BLAST of Lsi04G023920 vs. ExPASy TrEMBL
Match: A0A6J1II32 (uncharacterized protein At4g08330, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111477108 PE=4 SV=1)

HSP 1 Score: 294.3 bits (752), Expect = 3.3e-76
Identity = 143/167 (85.63%), Postives = 156/167 (93.41%), Query Frame = 0 

Query: 1   MRQSPDFGDDYAHGTHIQSFSSASLFPSSSRRDVYYSCGACGYELNLSSVNRNTSTIGSK 60
           MRQSP FGDD+  GTH+++FSS SL PSSSRRDVYYSCGACGYELNLSS NRN STIGSK
Sbjct: 1   MRQSPVFGDDHVEGTHVRAFSSPSLCPSSSRRDVYYSCGACGYELNLSSSNRNISTIGSK 60

Query: 61  YGKSIKRGIISFLNIDESRFTQVDELQCVPHFSKNSWGLFRRRIKLLCRKCGNHIGNAHS 120
           YGKSIKRGIISFLNIDESRFTQVD+LQCVPHFSK+SWGLF+RRIKLLCRKCGNHIGNA++
Sbjct: 61  YGKSIKRGIISFLNIDESRFTQVDQLQCVPHFSKHSWGLFQRRIKLLCRKCGNHIGNAYT 120

Query: 121 SHSSSTPLVSDGSDSSLPNEVSKCMKYEVKIRALQPSSSNEFGTTVI 168
           SH+SS+PLVSDGSDSSLPNEVS+CMKYEVKIRALQPSSS+E    VI
Sbjct: 121 SHTSSSPLVSDGSDSSLPNEVSRCMKYEVKIRALQPSSSHETSLQVI 167

[Close]
BLAST of Lsi04G023920 vs. ExPASy TrEMBL
Match: A0A6J1C0S6 (uncharacterized protein At4g08330, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111007277 PE=4 SV=1)

HSP 1 Score: 293.5 bits (750), Expect = 5.6e-76
Identity = 143/167 (85.63%), Postives = 154/167 (92.22%), Query Frame = 0 

Query: 1   MRQSPDFGDDYAHGTHIQSFSSASLFPSSSRRDVYYSCGACGYELNLSSVNRNTSTIGSK 60
           M+QSP  GDDY  GTH  SFS+ASL+ SSSRRDVYYSCGACGYELNLSS NRNTSTIGSK
Sbjct: 1   MKQSPVVGDDYIDGTHSHSFSAASLYSSSSRRDVYYSCGACGYELNLSSSNRNTSTIGSK 60

Query: 61  YGKSIKRGIISFLNIDESRFTQVDELQCVPHFSKNSWGLFRRRIKLLCRKCGNHIGNAHS 120
           YGKSIKRGIISFLN+DESRFTQVDELQCVPHFSK+SWGLFRRR KLLCRKCGNHIGNAH+
Sbjct: 61  YGKSIKRGIISFLNVDESRFTQVDELQCVPHFSKHSWGLFRRRTKLLCRKCGNHIGNAHT 120

Query: 121 SHSSSTPLVSDGSDSSLPNEVSKCMKYEVKIRALQPSSSNEFGTTVI 168
           S +SS PLVSDGSDSSLP+EVS+CMKYEVKIRALQPSSS++FG  VI
Sbjct: 121 SRASSIPLVSDGSDSSLPHEVSRCMKYEVKIRALQPSSSHDFGPPVI 167

[Close]
BLAST of Lsi04G023920 vs. NCBI nr
Match: XP_038896624.1 (uncharacterized protein At4g08330, chloroplastic [Benincasa hispida])

HSP 1 Score: 317.8 bits (813), Expect = 5.7e-83
Identity = 156/167 (93.41%), Postives = 162/167 (97.01%), Query Frame = 0 

Query: 1   MRQSPDFGDDYAHGTHIQSFSSASLFPSSSRRDVYYSCGACGYELNLSSVNRNTSTIGSK 60
           MRQSP FGDDY HGTHIQS SSASLFPSSSRRDVYYSCGACG+ELNLSSVNRNTSTIGSK
Sbjct: 1   MRQSPVFGDDYGHGTHIQSSSSASLFPSSSRRDVYYSCGACGFELNLSSVNRNTSTIGSK 60

Query: 61  YGKSIKRGIISFLNIDESRFTQVDELQCVPHFSKNSWGLFRRRIKLLCRKCGNHIGNAHS 120
           Y KSIKRGIISFLNIDESRFTQVDELQCVPHFSKNSWGLFRRRIKLLCRKCGNHIGNA S
Sbjct: 61  YDKSIKRGIISFLNIDESRFTQVDELQCVPHFSKNSWGLFRRRIKLLCRKCGNHIGNARS 120

Query: 121 SHSSSTPLVSDGSDSSLPNEVSKCMKYEVKIRALQPSSSNEFGTTVI 168
           S++SS+PLVSDGSDSSLPNEVS+CMKYEVKIRALQPSSSNEFGTTV+
Sbjct: 121 SNTSSSPLVSDGSDSSLPNEVSRCMKYEVKIRALQPSSSNEFGTTVM 167

[Close]
BLAST of Lsi04G023920 vs. NCBI nr
Match: XP_008444153.1 (PREDICTED: uncharacterized protein At4g08330, chloroplastic [Cucumis melo] >KAA0045256.1 uncharacterized protein E6C27_scaffold30G002760 [Cucumis melo var. makuwa] >TYK19280.1 uncharacterized protein E5676_scaffold1493G00930 [Cucumis melo var. makuwa])

HSP 1 Score: 316.6 bits (810), Expect = 1.3e-82
Identity = 155/168 (92.26%), Postives = 164/168 (97.62%), Query Frame = 0 

Query: 1   MRQSPDFGDDYAHGTHIQSFSSASLFPSSSRRDVYYSCGACGYELNLSSVNRNTSTIGSK 60
           MRQSP FGDDYAHGTHIQSFSSASLFPSSSRRDVYYSCGACGYELNLSS+NRNTSTIGSK
Sbjct: 1   MRQSPVFGDDYAHGTHIQSFSSASLFPSSSRRDVYYSCGACGYELNLSSINRNTSTIGSK 60

Query: 61  YGKSIKRGIISFLNIDESRFTQVDELQCVPHFSKNSWGLFRRRIKLLCRKCGNHIGNAHS 120
           YGKSIKRGIISFLNIDESRFTQVDELQCVPHFSKNSWGLFRRRIKLLCRKCGN+IGNAHS
Sbjct: 61  YGKSIKRGIISFLNIDESRFTQVDELQCVPHFSKNSWGLFRRRIKLLCRKCGNYIGNAHS 120

Query: 121 SHSSSTPLVSDGSD-SSLPNEVSKCMKYEVKIRALQPSSSNEFGTTVI 168
           +H++S+PLVSDGSD SSLPNEVS+CMKYEVKIRALQPSSSNEF  ++I
Sbjct: 121 NHTASSPLVSDGSDSSSLPNEVSRCMKYEVKIRALQPSSSNEFEPSII 168

[Close]
BLAST of Lsi04G023920 vs. NCBI nr
Match: XP_011653802.1 (uncharacterized protein At4g08330, chloroplastic [Cucumis sativus] >KGN54566.1 hypothetical protein Csa_012047 [Cucumis sativus])

HSP 1 Score: 316.2 bits (809), Expect = 1.7e-82
Identity = 154/168 (91.67%), Postives = 164/168 (97.62%), Query Frame = 0 

Query: 1   MRQSPDFGDDYAHGTHIQSFSSASLFPSSSRRDVYYSCGACGYELNLSSVNRNTSTIGSK 60
           MRQSP FGDDYAHGTH+QSFSSASLFPSSSRRDVYYSCGACGYELNLSS+NRNTSTIGSK
Sbjct: 1   MRQSPVFGDDYAHGTHVQSFSSASLFPSSSRRDVYYSCGACGYELNLSSINRNTSTIGSK 60

Query: 61  YGKSIKRGIISFLNIDESRFTQVDELQCVPHFSKNSWGLFRRRIKLLCRKCGNHIGNAHS 120
           YGKSIKRGIISFLNIDESRFTQVDELQCVPHFSKNSWGLFRRRIKLLCRKCGN+IGNAHS
Sbjct: 61  YGKSIKRGIISFLNIDESRFTQVDELQCVPHFSKNSWGLFRRRIKLLCRKCGNYIGNAHS 120

Query: 121 SHSSSTPLVSDGSD-SSLPNEVSKCMKYEVKIRALQPSSSNEFGTTVI 168
           +H++S+PLVSDGSD SSLPNEVS+CMKYEVKIRALQPSSSNEF  ++I
Sbjct: 121 NHTASSPLVSDGSDSSSLPNEVSRCMKYEVKIRALQPSSSNEFEPSII 168

[Close]
BLAST of Lsi04G023920 vs. NCBI nr
Match: XP_022976871.1 (uncharacterized protein At4g08330, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 294.3 bits (752), Expect = 6.7e-76
Identity = 143/167 (85.63%), Postives = 156/167 (93.41%), Query Frame = 0 

Query: 1   MRQSPDFGDDYAHGTHIQSFSSASLFPSSSRRDVYYSCGACGYELNLSSVNRNTSTIGSK 60
           MRQSP FGDD+  GTH+++FSS SL PSSSRRDVYYSCGACGYELNLSS NRN STIGSK
Sbjct: 1   MRQSPVFGDDHVEGTHVRAFSSPSLCPSSSRRDVYYSCGACGYELNLSSSNRNISTIGSK 60

Query: 61  YGKSIKRGIISFLNIDESRFTQVDELQCVPHFSKNSWGLFRRRIKLLCRKCGNHIGNAHS 120
           YGKSIKRGIISFLNIDESRFTQVD+LQCVPHFSK+SWGLF+RRIKLLCRKCGNHIGNA++
Sbjct: 61  YGKSIKRGIISFLNIDESRFTQVDQLQCVPHFSKHSWGLFQRRIKLLCRKCGNHIGNAYT 120

Query: 121 SHSSSTPLVSDGSDSSLPNEVSKCMKYEVKIRALQPSSSNEFGTTVI 168
           SH+SS+PLVSDGSDSSLPNEVS+CMKYEVKIRALQPSSS+E    VI
Sbjct: 121 SHTSSSPLVSDGSDSSLPNEVSRCMKYEVKIRALQPSSSHETSLQVI 167

[Close]
BLAST of Lsi04G023920 vs. NCBI nr
Match: XP_022135315.1 (uncharacterized protein At4g08330, chloroplastic [Momordica charantia])

HSP 1 Score: 293.5 bits (750), Expect = 1.1e-75
Identity = 143/167 (85.63%), Postives = 154/167 (92.22%), Query Frame = 0 

Query: 1   MRQSPDFGDDYAHGTHIQSFSSASLFPSSSRRDVYYSCGACGYELNLSSVNRNTSTIGSK 60
           M+QSP  GDDY  GTH  SFS+ASL+ SSSRRDVYYSCGACGYELNLSS NRNTSTIGSK
Sbjct: 1   MKQSPVVGDDYIDGTHSHSFSAASLYSSSSRRDVYYSCGACGYELNLSSSNRNTSTIGSK 60

Query: 61  YGKSIKRGIISFLNIDESRFTQVDELQCVPHFSKNSWGLFRRRIKLLCRKCGNHIGNAHS 120
           YGKSIKRGIISFLN+DESRFTQVDELQCVPHFSK+SWGLFRRR KLLCRKCGNHIGNAH+
Sbjct: 61  YGKSIKRGIISFLNVDESRFTQVDELQCVPHFSKHSWGLFRRRTKLLCRKCGNHIGNAHT 120

Query: 121 SHSSSTPLVSDGSDSSLPNEVSKCMKYEVKIRALQPSSSNEFGTTVI 168
           S +SS PLVSDGSDSSLP+EVS+CMKYEVKIRALQPSSS++FG  VI
Sbjct: 121 SRASSIPLVSDGSDSSLPHEVSRCMKYEVKIRALQPSSSHDFGPPVI 167

[Close]
BLAST of Lsi04G023920 vs. TAIR 10
Match: AT4G08330.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G17705.1); Has 98 Blast hits to 98 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 98; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 178.3 bits (451), Expect = 5.0e-45
Identity = 91/141 (64.54%), Postives = 107/141 (75.89%), Query Frame = 0 

Query: 19  SFSSASLFPSSSRRDVYYSCGACGYELNLSSVNRNTSTIGSKYGKSIKRGIISFLNIDES 78
           SFSS+S   SSS R V YSCG+CGYELNLSS NR TSTIGSKYGKS+K GIISF NIDE 
Sbjct: 23  SFSSSS--SSSSMRHVNYSCGSCGYELNLSSTNRITSTIGSKYGKSMKSGIISFFNIDEG 82

Query: 79  RFTQVDELQCVPHFSKNSWGLFRRRIKLLCRKCGNHIGNAHSSHSSSTPLVSDGSDSSLP 138
           RF+QVDE QC+PHFS+ SWGLFR R KLLCRKC N+IGNA    +    LV+  SD + P
Sbjct: 83  RFSQVDEFQCMPHFSRYSWGLFRHRTKLLCRKCNNYIGNASQEKAPEYALVTQNSDPTSP 142

Query: 139 NEVSKCMKYEVKIRALQPSSS 160
             +    KY+++IR+LQPSS+
Sbjct: 143 -RIGSVTKYDIRIRSLQPSSA 160

[Close]
BLAST of Lsi04G023920 vs. TAIR 10
Match: AT4G08330.2 (unknown protein. )

HSP 1 Score: 147.1 bits (370), Expect = 1.2e-35
Identity = 81/141 (57.45%), Postives = 96/141 (68.09%), Query Frame = 0 

Query: 19  SFSSASLFPSSSRRDVYYSCGACGYELNLSSVNRNTSTIGSKYGKSIKRGIISFLNIDES 78
           SFSS+S   SSS R V           N SS NR TSTIGSKYGKS+K GIISF NIDE 
Sbjct: 23  SFSSSS--SSSSMRHV-----------NYSSTNRITSTIGSKYGKSMKSGIISFFNIDEG 82

Query: 79  RFTQVDELQCVPHFSKNSWGLFRRRIKLLCRKCGNHIGNAHSSHSSSTPLVSDGSDSSLP 138
           RF+QVDE QC+PHFS+ SWGLFR R KLLCRKC N+IGNA    +    LV+  SD + P
Sbjct: 83  RFSQVDEFQCMPHFSRYSWGLFRHRTKLLCRKCNNYIGNASQEKAPEYALVTQNSDPTSP 142

Query: 139 NEVSKCMKYEVKIRALQPSSS 160
             +    KY+++IR+LQPSS+
Sbjct: 143 -RIGSVTKYDIRIRSLQPSSA 149

[Close]
BLAST of Lsi04G023920 vs. TAIR 10
Match: AT2G17705.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: cultured cell; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G08330.1); Has 135 Blast hits to 135 proteins in 32 species: Archae - 5; Bacteria - 29; Metazoa - 0; Fungi - 0; Plants - 91; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). )

HSP 1 Score: 51.6 bits (122), Expect = 7.1e-07
Identity = 39/126 (30.95%), Postives = 61/126 (48.41%), Query Frame = 0 

Query: 36  YSCGACGYELNLSSVNRNTSTIGSKYGKSIKRGIISFLNIDESRFTQVDELQCVPHF-SK 95
           Y+C  CG +LNL   N N       Y ++  +G +SF  +D  +F    E + +P F + 
Sbjct: 6   YTCKECGSDLNL---NPNDLFPPDFYFEAGNKGTLSFAAVDAEKFRFEKEDKIMPFFETL 65

Query: 96  NSWGLFRRRIKLLCRKCGNHIGNAHSSHSSSTPLVSD-GSDSSLPNEV-SKCMKYEVKIR 155
           N WG+ R+R K+ C  C + IG     +    PL    G     P++V  +  +Y  K +
Sbjct: 66  NYWGIQRKRTKIKCTSCNHLIGYI---YDDGPPLTGGIGQYGFGPSQVIPRAPRYRFKTK 125

Query: 156 ALQPSS 159
           A+Q SS
Sbjct: 126 AVQVSS 125

The following BLAST results are available for this feature:
BLAST of Lsi04G023920 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9STN57.1e-4464.54Uncharacterized protein At4g08330, chloroplastic OS=Arabidopsis thaliana OX=3702... [more]
BLAST of Lsi04G023920 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3D7416.1e-8392.26Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A1S3B9P16.1e-8392.26uncharacterized protein At4g08330, chloroplastic OS=Cucumis melo OX=3656 GN=LOC1... [more]
A0A0A0L3758.0e-8391.67Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G363480 PE=4 SV=1[more]
A0A6J1II323.3e-7685.63uncharacterized protein At4g08330, chloroplastic-like OS=Cucurbita maxima OX=366... [more]
A0A6J1C0S65.6e-7685.63uncharacterized protein At4g08330, chloroplastic OS=Momordica charantia OX=3673 ... [more]
BLAST of Lsi04G023920 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038896624.15.7e-8393.41uncharacterized protein At4g08330, chloroplastic [Benincasa hispida][more]
XP_008444153.11.3e-8292.26PREDICTED: uncharacterized protein At4g08330, chloroplastic [Cucumis melo] >KAA0... [more]
XP_011653802.11.7e-8291.67uncharacterized protein At4g08330, chloroplastic [Cucumis sativus] >KGN54566.1 h... [more]
XP_022976871.16.7e-7685.63uncharacterized protein At4g08330, chloroplastic-like [Cucurbita maxima][more]
XP_022135315.11.1e-7585.63uncharacterized protein At4g08330, chloroplastic [Momordica charantia][more]
BLAST of Lsi04G023920 vs. TAIR 10
Match NameE-valueIdentityDescription
AT4G08330.15.0e-4564.54unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT4G08330.21.2e-3557.45unknown protein. [more]
AT2G17705.17.1e-0730.95unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33674METHIONINE-S-OXIDE REDUCTASEcoord: 17..165
NoneNo IPR availablePANTHERPTHR33674:SF8NITRATE REDUCTASE [NAD(P)H]-LIKE ISOFORM X1coord: 17..165

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi04G023920.1Lsi04G023920.1mRNA