Lsi04G023550 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi04G023550
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	endoplasmic reticulum-Golgi intermediate compartment protein 3-like
Location	chr04: 30748807 .. 30749954 (-)
RNA-Seq Expression	Lsi04G023550
Synteny	Lsi04G023550

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAAGCTTGATGAACAGGATTCGCAAATTGGACGCCTATCCGAAAATCAGCGAAGATTTTTACAATCGTACACTCTCCGGTGGATTCATCACTATCGCTTCCTCCATTATAATGTTATTGCTCTTCTTCTCCGAGCTTCGTATGTTCTTTGCTGTTTATATTTTCTTATTGTATTCTCTGCATGCAGCATGCTACGTTTCTTTTGGGAGTTTTCTCCATACACATTTTGGAACTTAGCTCAATTTCCCTTATCGGCAAAATCCAGGAATGAACTGATATGCAACGATTTTTGGAATAATTTTATTCATAGGTTGTTAGTTTCTTATTAGCAAAATAACTGAGTCGATTAGATTTCCTTTTCCTTTGTTTCCCCTTTTAATTTCCATGTTATGGATTGTTAGCTTGTGCAAGAATTGAAATTCACAAAGCATCAATCTGCTAATTCGATGAGGAACAGTTGTTTAATTACATGTATCATTTTATCCTACTGAAACTCTACTATCAAGAAAGCATTTAATTTAATGGCCTCCACAGTGAACCACCTGCCCTCCCCTCCAATACGCTCCATCCTCATTGACACTTTACAGTATGCCACAATCACAAATGGCCATGAGATCCTACTAAAGGAACAAGGAAAAGCATCAAACCAATCACTCAGTCTCTCTCGGAAAGCATTGGATTGGTTGGTTGGCATCCTCCTTCCGATCGCTTCATCGAGACCCCTGCAACTACAAGTTTTTCAAAAAATTGATTGATGACAATGCAACTCTTTGGTTGGAAAAACATAGTAACAAGCATGGCTACTATGTAGAATTGACTCAGCTATTTCACACGGGAAAACGTACCAAGATGTTCATTCCATCTAAAGAACAAAAGAGAGGGTGGTTCTCCTTTTTCTCCGAGGGTGGTTCTCCTTTTTCTCCTTAATCTCCGACTTCATTTTGAAACCACAAAGCAGTATTAACCCACGGCCATCATATAAAGAAGCTATCCATTCGCACCTTGCAGGCCCCTCTTTTTCTCCAGTAGCCTCATCAGCCCATCCTCCAGTGCATTCTGTTGCAGATGGAACTCTTTATCCTCAAGCCGATTGGACATCAATGGTGATTGTGCAACTTCATTTTGAAACCACAAAGCAGTATTAA

mRNA sequence

ATGGAAAGCTTGATGAACAGGATTCGCAAATTGGACGCCTATCCGAAAATCAGCGAAGATTTTTACAATCGTACACTCTCCGGTGGATTCATCACTATCGCTTCCTCCATTATAATGTTATTGCTCTTCTTCTCCGAGCTTCGCCCCTCTTTTTCTCCAGTAGCCTCATCAGCCCATCCTCCAGTGCATTCTGTTGCAGATGGAACTCTTTATCCTCAAGCCGATTGGACATCAATGGTGATTGTGCAACTTCATTTTGAAACCACAAAGCAGTATTAA

Coding sequence (CDS)

ATGGAAAGCTTGATGAACAGGATTCGCAAATTGGACGCCTATCCGAAAATCAGCGAAGATTTTTACAATCGTACACTCTCCGGTGGATTCATCACTATCGCTTCCTCCATTATAATGTTATTGCTCTTCTTCTCCGAGCTTCGCCCCTCTTTTTCTCCAGTAGCCTCATCAGCCCATCCTCCAGTGCATTCTGTTGCAGATGGAACTCTTTATCCTCAAGCCGATTGGACATCAATGGTGATTGTGCAACTTCATTTTGAAACCACAAAGCAGTATTAA

Protein sequence

MESLMNRIRKLDAYPKISEDFYNRTLSGGFITIASSIIMLLLFFSELRPSFSPVASSAHPPVHSVADGTLYPQADWTSMVIVQLHFETTKQY

Homology

[Close]

BLAST of Lsi04G023550 vs. ExPASy Swiss-Prot
Match: Q6NVS2 (Endoplasmic reticulum-Golgi intermediate compartment protein 3 OS=Xenopus tropicalis OX=8364 GN=ergic3 PE=2 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 5.0e-07
Identity = 27/48 (56.25%), Postives = 36/48 (75.00%), Query Frame = 0


Query: 1  MESLMNRIRKLDAYPKISEDFYNRTLSGGFITIASSIIMLLLFFSELR 49
          MESL +R+R+ DAYPK  EDF  +T  G  +T+ S +IML+LFFSEL+
Sbjct: 1  MESL-HRLRQFDAYPKTLEDFRVKTCGGALVTVISGLIMLILFFSELQ 47

[Close]

BLAST of Lsi04G023550 vs. ExPASy Swiss-Prot
Match: Q66KH2 (Endoplasmic reticulum-Golgi intermediate compartment protein 3 OS=Xenopus laevis OX=8355 GN=ergic3 PE=2 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 1.4e-06
Identity = 26/48 (54.17%), Postives = 36/48 (75.00%), Query Frame = 0


Query: 1  MESLMNRIRKLDAYPKISEDFYNRTLSGGFITIASSIIMLLLFFSELR 49
          ME+L +R+R+ DAYPK  EDF  +T  G  +T+ S +IML+LFFSEL+
Sbjct: 1  METL-HRLRQFDAYPKTLEDFRVKTCGGAVVTVISGLIMLILFFSELQ 47

[Close]

BLAST of Lsi04G023550 vs. ExPASy Swiss-Prot
Match: Q803I2 (Endoplasmic reticulum-Golgi intermediate compartment protein 3 OS=Danio rerio OX=7955 GN=ergic3 PE=2 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 2.5e-06
Identity = 23/44 (52.27%), Postives = 33/44 (75.00%), Query Frame = 0


Query: 5  MNRIRKLDAYPKISEDFYNRTLSGGFITIASSIIMLLLFFSELR 49
          +N++++ DAYPK  EDF  +T  G  +TI S +IML+LFFSEL+
Sbjct: 4  LNKLKQFDAYPKTLEDFRIKTCGGATVTIISGLIMLILFFSELQ 47

[Close]

BLAST of Lsi04G023550 vs. ExPASy Swiss-Prot
Match: Q5EAE0 (Endoplasmic reticulum-Golgi intermediate compartment protein 3 OS=Bos taurus OX=9913 GN=ERGIC3 PE=2 SV=1)

HSP 1 Score: 48.9 bits (115), Expect = 3.6e-05
Identity = 24/48 (50.00%), Postives = 34/48 (70.83%), Query Frame = 0


Query: 1  MESLMNRIRKLDAYPKISEDFYNRTLSGGFITIASSIIMLLLFFSELR 49
          ME+L  ++++ DAYPK  EDF  +T  G  +TI S ++MLLLF SEL+
Sbjct: 1  MEAL-GKLKQFDAYPKTLEDFRVKTCGGATVTIVSGLLMLLLFLSELQ 47

[Close]

BLAST of Lsi04G023550 vs. ExPASy Swiss-Prot
Match: Q9Y282 (Endoplasmic reticulum-Golgi intermediate compartment protein 3 OS=Homo sapiens OX=9606 GN=ERGIC3 PE=1 SV=1)

HSP 1 Score: 48.9 bits (115), Expect = 3.6e-05
Identity = 24/48 (50.00%), Postives = 34/48 (70.83%), Query Frame = 0


Query: 1  MESLMNRIRKLDAYPKISEDFYNRTLSGGFITIASSIIMLLLFFSELR 49
          ME+L  ++++ DAYPK  EDF  +T  G  +TI S ++MLLLF SEL+
Sbjct: 1  MEAL-GKLKQFDAYPKTLEDFRVKTCGGATVTIVSGLLMLLLFLSELQ 47

[Close]

BLAST of Lsi04G023550 vs. ExPASy TrEMBL
Match: A0A5D3D4Y8 (Endoplasmic reticulum-Golgi intermediate compartment protein 3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold119G001420 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 1.0e-15
Identity = 46/48 (95.83%), Postives = 47/48 (97.92%), Query Frame = 0


Query: 1  MESLMNRIRKLDAYPKISEDFYNRTLSGGFITIASSIIMLLLFFSELR 49
          MESLMN+IRKLDAYPKISEDFYNRTLSGGFITIASSIIM LLFFSELR
Sbjct: 1  MESLMNKIRKLDAYPKISEDFYNRTLSGGFITIASSIIMFLLFFSELR 48

[Close]

BLAST of Lsi04G023550 vs. ExPASy TrEMBL
Match: A0A5A7VET7 (Endoplasmic reticulum-Golgi intermediate compartment protein 3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold548G001940 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 1.0e-15
Identity = 46/48 (95.83%), Postives = 47/48 (97.92%), Query Frame = 0


Query: 1  MESLMNRIRKLDAYPKISEDFYNRTLSGGFITIASSIIMLLLFFSELR 49
          MESLMN+IRKLDAYPKISEDFYNRTLSGGFITIASSIIM LLFFSELR
Sbjct: 1  MESLMNKIRKLDAYPKISEDFYNRTLSGGFITIASSIIMFLLFFSELR 48

[Close]

BLAST of Lsi04G023550 vs. ExPASy TrEMBL
Match: A0A0A0KYN4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G377760 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 1.0e-15
Identity = 46/48 (95.83%), Postives = 47/48 (97.92%), Query Frame = 0


Query: 1  MESLMNRIRKLDAYPKISEDFYNRTLSGGFITIASSIIMLLLFFSELR 49
          MESLMN+IRKLDAYPKISEDFYNRTLSGGFITIASSIIM LLFFSELR
Sbjct: 1  MESLMNKIRKLDAYPKISEDFYNRTLSGGFITIASSIIMFLLFFSELR 48

[Close]

BLAST of Lsi04G023550 vs. ExPASy TrEMBL
Match: A0A1S3B9N2 (endoplasmic reticulum-Golgi intermediate compartment protein 3-like OS=Cucumis melo OX=3656 GN=LOC103487547 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 1.0e-15
Identity = 46/48 (95.83%), Postives = 47/48 (97.92%), Query Frame = 0


Query: 1  MESLMNRIRKLDAYPKISEDFYNRTLSGGFITIASSIIMLLLFFSELR 49
          MESLMN+IRKLDAYPKISEDFYNRTLSGGFITIASSIIM LLFFSELR
Sbjct: 1  MESLMNKIRKLDAYPKISEDFYNRTLSGGFITIASSIIMFLLFFSELR 48

[Close]

BLAST of Lsi04G023550 vs. ExPASy TrEMBL
Match: A0A6J1IVA3 (endoplasmic reticulum-Golgi intermediate compartment protein 3-like OS=Cucurbita maxima OX=3661 GN=LOC111480286 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 5.1e-15
Identity = 45/48 (93.75%), Postives = 47/48 (97.92%), Query Frame = 0


Query: 1  MESLMNRIRKLDAYPKISEDFYNRTLSGGFITIASSIIMLLLFFSELR 49
          MESLMN+IRKLDAYPKISEDFY+RTLSGGFITI SSIIMLLLFFSELR
Sbjct: 1  MESLMNKIRKLDAYPKISEDFYSRTLSGGFITIISSIIMLLLFFSELR 48

[Close]

BLAST of Lsi04G023550 vs. NCBI nr
Match: XP_031740134.1 (endoplasmic reticulum-Golgi intermediate compartment protein 3 [Cucumis sativus] >KGN54613.1 hypothetical protein Csa_012233 [Cucumis sativus])

HSP 1 Score: 92.4 bits (228), Expect = 2.1e-15
Identity = 46/48 (95.83%), Postives = 47/48 (97.92%), Query Frame = 0


Query: 1  MESLMNRIRKLDAYPKISEDFYNRTLSGGFITIASSIIMLLLFFSELR 49
          MESLMN+IRKLDAYPKISEDFYNRTLSGGFITIASSIIM LLFFSELR
Sbjct: 1  MESLMNKIRKLDAYPKISEDFYNRTLSGGFITIASSIIMFLLFFSELR 48

[Close]

BLAST of Lsi04G023550 vs. NCBI nr
Match: KAA0064241.1 (endoplasmic reticulum-Golgi intermediate compartment protein 3-like [Cucumis melo var. makuwa])

HSP 1 Score: 92.4 bits (228), Expect = 2.1e-15
Identity = 46/48 (95.83%), Postives = 47/48 (97.92%), Query Frame = 0


Query: 1  MESLMNRIRKLDAYPKISEDFYNRTLSGGFITIASSIIMLLLFFSELR 49
          MESLMN+IRKLDAYPKISEDFYNRTLSGGFITIASSIIM LLFFSELR
Sbjct: 1  MESLMNKIRKLDAYPKISEDFYNRTLSGGFITIASSIIMFLLFFSELR 48

[Close]

BLAST of Lsi04G023550 vs. NCBI nr
Match: XP_008444108.1 (PREDICTED: endoplasmic reticulum-Golgi intermediate compartment protein 3-like [Cucumis melo])

HSP 1 Score: 92.4 bits (228), Expect = 2.1e-15
Identity = 46/48 (95.83%), Postives = 47/48 (97.92%), Query Frame = 0


Query: 1  MESLMNRIRKLDAYPKISEDFYNRTLSGGFITIASSIIMLLLFFSELR 49
          MESLMN+IRKLDAYPKISEDFYNRTLSGGFITIASSIIM LLFFSELR
Sbjct: 1  MESLMNKIRKLDAYPKISEDFYNRTLSGGFITIASSIIMFLLFFSELR 48

[Close]

BLAST of Lsi04G023550 vs. NCBI nr
Match: TYK18611.1 (endoplasmic reticulum-Golgi intermediate compartment protein 3-like [Cucumis melo var. makuwa])

HSP 1 Score: 92.4 bits (228), Expect = 2.1e-15
Identity = 46/48 (95.83%), Postives = 47/48 (97.92%), Query Frame = 0


Query: 1  MESLMNRIRKLDAYPKISEDFYNRTLSGGFITIASSIIMLLLFFSELR 49
          MESLMN+IRKLDAYPKISEDFYNRTLSGGFITIASSIIM LLFFSELR
Sbjct: 1  MESLMNKIRKLDAYPKISEDFYNRTLSGGFITIASSIIMFLLFFSELR 48

[Close]

BLAST of Lsi04G023550 vs. NCBI nr
Match: XP_038899846.1 (endoplasmic reticulum-Golgi intermediate compartment protein 3-like [Benincasa hispida])

HSP 1 Score: 91.7 bits (226), Expect = 3.6e-15
Identity = 46/48 (95.83%), Postives = 47/48 (97.92%), Query Frame = 0


Query: 1  MESLMNRIRKLDAYPKISEDFYNRTLSGGFITIASSIIMLLLFFSELR 49
          MESLMN+IRKLDAYPKISEDFYNRTLSGGFITIASSIIMLLLF SELR
Sbjct: 1  MESLMNKIRKLDAYPKISEDFYNRTLSGGFITIASSIIMLLLFISELR 48

[Close]

BLAST of Lsi04G023550 vs. TAIR 10
Match: AT1G22200.1 (Endoplasmic reticulum vesicle transporter protein )

HSP 1 Score: 79.7 bits (195), Expect = 1.3e-15
Identity = 38/57 (66.67%), Postives = 46/57 (80.70%), Query Frame = 0


Query: 1  MESLMNRIRKLDAYPKISEDFYNRTLSGGFITIASSIIMLLLFFSELRPSFSPVASS 58
          M  +MNR+R LDAYPKI+EDFY RTLSGG IT+ASSI+ML+LFFSEL+    PV  +
Sbjct: 1  MVGVMNRLRNLDAYPKINEDFYRRTLSGGVITLASSIVMLILFFSELQLYIHPVTET 57

[Close]

BLAST of Lsi04G023550 vs. TAIR 10
Match: AT1G22200.2 (Endoplasmic reticulum vesicle transporter protein )

HSP 1 Score: 79.7 bits (195), Expect = 1.3e-15
Identity = 38/57 (66.67%), Postives = 46/57 (80.70%), Query Frame = 0


Query: 1  MESLMNRIRKLDAYPKISEDFYNRTLSGGFITIASSIIMLLLFFSELRPSFSPVASS 58
          M  +MNR+R LDAYPKI+EDFY RTLSGG IT+ASSI+ML+LFFSEL+    PV  +
Sbjct: 1  MVGVMNRLRNLDAYPKINEDFYRRTLSGGVITLASSIVMLILFFSELQLYIHPVTET 57

[Close]

BLAST of Lsi04G023550 vs. TAIR 10
Match: AT1G36050.1 (Endoplasmic reticulum vesicle transporter protein )

HSP 1 Score: 74.7 bits (182), Expect = 4.3e-14
Identity = 33/48 (68.75%), Postives = 42/48 (87.50%), Query Frame = 0


Query: 1  MESLMNRIRKLDAYPKISEDFYNRTLSGGFITIASSIIMLLLFFSELR 49
          M  ++N++R LDAYPKI+EDFY+RTLSGG IT+ SS++M LLFFSELR
Sbjct: 1  MAGILNKLRNLDAYPKINEDFYSRTLSGGVITLLSSVVMFLLFFSELR 48

[Close]

BLAST of Lsi04G023550 vs. TAIR 10
Match: AT1G36050.2 (Endoplasmic reticulum vesicle transporter protein )

HSP 1 Score: 74.7 bits (182), Expect = 4.3e-14
Identity = 33/48 (68.75%), Postives = 42/48 (87.50%), Query Frame = 0


Query: 1  MESLMNRIRKLDAYPKISEDFYNRTLSGGFITIASSIIMLLLFFSELR 49
          M  ++N++R LDAYPKI+EDFY+RTLSGG IT+ SS++M LLFFSELR
Sbjct: 1  MAGILNKLRNLDAYPKINEDFYSRTLSGGVITLLSSVVMFLLFFSELR 48

The following BLAST results are available for this feature:

BLAST of Lsi04G023550 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q6NVS2	5.0e-07	56.25	Endoplasmic reticulum-Golgi intermediate compartment protein 3 OS=Xenopus tropic...	[more]
Q66KH2	1.4e-06	54.17	Endoplasmic reticulum-Golgi intermediate compartment protein 3 OS=Xenopus laevis...	[more]
Q803I2	2.5e-06	52.27	Endoplasmic reticulum-Golgi intermediate compartment protein 3 OS=Danio rerio OX...	[more]
Q5EAE0	3.6e-05	50.00	Endoplasmic reticulum-Golgi intermediate compartment protein 3 OS=Bos taurus OX=...	[more]
Q9Y282	3.6e-05	50.00	Endoplasmic reticulum-Golgi intermediate compartment protein 3 OS=Homo sapiens O...	[more]

BLAST of Lsi04G023550 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3D4Y8	1.0e-15	95.83	Endoplasmic reticulum-Golgi intermediate compartment protein 3-like OS=Cucumis m...	[more]
A0A5A7VET7	1.0e-15	95.83	Endoplasmic reticulum-Golgi intermediate compartment protein 3-like OS=Cucumis m...	[more]
A0A0A0KYN4	1.0e-15	95.83	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G377760 PE=4 SV=1	[more]
A0A1S3B9N2	1.0e-15	95.83	endoplasmic reticulum-Golgi intermediate compartment protein 3-like OS=Cucumis m...	[more]
A0A6J1IVA3	5.1e-15	93.75	endoplasmic reticulum-Golgi intermediate compartment protein 3-like OS=Cucurbita...	[more]

BLAST of Lsi04G023550 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_031740134.1	2.1e-15	95.83	endoplasmic reticulum-Golgi intermediate compartment protein 3 [Cucumis sativus]...	[more]
KAA0064241.1	2.1e-15	95.83	endoplasmic reticulum-Golgi intermediate compartment protein 3-like [Cucumis mel...	[more]
XP_008444108.1	2.1e-15	95.83	PREDICTED: endoplasmic reticulum-Golgi intermediate compartment protein 3-like [...	[more]
TYK18611.1	2.1e-15	95.83	endoplasmic reticulum-Golgi intermediate compartment protein 3-like [Cucumis mel...	[more]
XP_038899846.1	3.6e-15	95.83	endoplasmic reticulum-Golgi intermediate compartment protein 3-like [Benincasa h...	[more]

BLAST of Lsi04G023550 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G22200.1	1.3e-15	66.67	Endoplasmic reticulum vesicle transporter protein	[more]
AT1G22200.2	1.3e-15	66.67	Endoplasmic reticulum vesicle transporter protein	[more]
AT1G36050.1	4.3e-14	68.75	Endoplasmic reticulum vesicle transporter protein	[more]
AT1G36050.2	4.3e-14	68.75	Endoplasmic reticulum vesicle transporter protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR039542	Endoplasmic reticulum vesicle transporter, N-terminal	PFAM	PF13850	ERGIC_N	coord: 8..54 e-value: 1.4E-12 score: 47.7
None	No IPR available	PANTHER	PTHR10984:SF60	ENDOPLASMIC RETICULUM VESICLE TRANSPORTER PROTEIN	coord: 2..57
None	No IPR available	PANTHER	PTHR10984	ENDOPLASMIC RETICULUM-GOLGI INTERMEDIATE COMPARTMENT PROTEIN	coord: 2..57

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi04G023550.1	Lsi04G023550.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0030134	COPII-coated ER to Golgi transport vesicle
cellular_component	GO:0005783	endoplasmic reticulum
cellular_component	GO:0016021	integral component of membrane