Lsi04G023080 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi04G023080
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Unknown protein
Location	chr04: 30267770 .. 30270099 (-)
RNA-Seq Expression	Lsi04G023080
Synteny	Lsi04G023080

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATTAGTAGCTAATGTTAAGATTTTAGAGACTAATCTTATTAACATCCAAAGATAATTCCTTTTTAAGAGTCCCACCATCTTTGGTAATGACAATCCCAAGCAAGCGACAAGGTTGGGCTTCTTCAAGCATTTGAACAACACTTCTCATTGTGGGTCTCAAAGTGGGAAGCCTGGCTGTGCACAATATTGCAATTCTTAATACCTTTATTGCATCTTCTTTAAATGCATCTGGAATTCTTGAATCTACTAAGCTTAATACACTTTCTCTTGTTTTCAAATTCTTCGATACCCATTGAACAATCTCCTTGTTCTCTCCAAACTCTGCATCTATTGCTTTTTTTCCACTCACTAACTCCATCAATACCACTCCAAAACTATACACATCGCTCTTTTCGTCGACTTTGTAAGTGTATCCATACTCTGCATAACATTAATTCAACGTTAAAAACACACATCCACCTTTATGCATATTAAATCGAATAACAACAATGACAATAATTTAAAGTATGTTTATTGACTTTTTGAATAATTTTAGATGATAAAAATGTTTTTTCAATCTTAATAAACAATGTTAAATCACCGATCAATCCAAAAGGTTCACTTGATGGATAGGGTTGTGGATGTTTGATTATTATAGTGGTTCAAACGTGTAAGACGTCATCTTCTCTAATTAACCCAGAAACTTTAATGAATAGGTTATAGTAAATTTAAATTATATAAATATTTCAACAAATAACAAATAAAAAATACACTTTGGTCTTGTATCATACACGCCTCAAATGATTTATAGTATGTTTGGAAGTGATTTCAAAAGGATTAAAATCATTTTTTACATTTTTTATTAAAAGAACAAAAAATTTAGTGCAGTCTAGGCCGCTATTACATAGCCCAGTCAAACCAGATAAAAAATTGTCATAGGGCTTCCCTTTTTATAATCATTATGAAAGATAATTTTAATTGTTCAAACCCAATTTTACTTAATTTTCAAGTGATTAAAGAAGTGATTTTGAATATTATAAAAGTGATTTTAACAATTTCAAAATTAGTATTAAATATTTATTTAAAATTGATTTTTTTTCAATCAATTTTTTCTCTCGTTCATCTTTACATATTATTAAGTTGATAGATTATAGTAAATTTAATTGGTAACAAGTTTACCTGGTGCGATGTAGCCCGGAGTGCCTGCAATGACATGGCTGGTCTCGTTGAACCCAGTTGTGTGAAGAATTTTGGCAAGACCAAAATCCGCGATTCTGGGCTTCAGAAATTCATCCAAAAGTATGTTACTCGACTTAACATCCCGGTGGATCACCGGCCGATCACAGCCGTGATGAAGATACTCCAATCCCTTCGCCGCTCCGACGGCAATTTCGTATCTTGTTTCCCAATCCAACTCCATTTTTCTCGACGTGTGAAGTCTGTCCCATAAGCTTCCATTTGGCATGTATTCGTACACCAACAGGCTCGAAACCTCGCTCGTGATGCTGCAATACAGCTTCACCACGTTCACATGGCGGATCGAGCTCAGAGTCTTCACCTCCGAGTCAAATTCCGACGACTTCGTTCTCTGTTTCACCAGAATCGGCGATGAACTCCGGTAAGTCTTCTTCCTCCCCTCGTACGGATCGGTGTTCCAAATGTGCTTCACGGCGAACTCTTTTCCGTTTCCGACGGTCACTTTGTAAACGTTGCCGGAACCTCCTTTTCCGATTAGATTCTCGTCTTTAATGGAATCGAGGATTTCGTCCTCTGTGAACGTCATTACGTGGAATGATTTTAGGTCCCACGATTCCTCTTTAAGCGACCAATCTCTATCTTTTCCGCTCTTTCTCAAGGTTATGAAGCACCACAACGTCACGCTGAGAAGAATTAATCCGATGGCGAAACAGATGACAAGTGTTTTGACGTCCTTCGACGCGCCAGAACTCTGTGAACATCGCCGTATAAAGTCATCGGCCTCACTGCAGAGGCCAGGGTTTCCGGCAAAGCTTTCTTTGTAAGCTCCGTTTGAGAGCGCTTGAGGTACTGGACCGGTTAATTGATTGTTGGAAAGATCGAGAAAACTCAATTTCAGATGCGAAAATGTCGAGGGGATTTCACCTGATAGGTCGTTATTGGAGAGATTCAAAGAGTTTAGAACTGGAAGAAAGCCCAGCGACGAAGGTATCTGTCCAGAGAAGAAATTCTCCGCCAGATTGACGATACTCAAAGAATTACACAAGCCGATCGTCTCTGGAATCGAACCGGAAAATTTATTCCCCTGCAATTCGAAGCTATCGAGATTCTTCAAGTCACCAATAGTCGTCGGAAGTTCATCAGAGAATTGA

mRNA sequence

ATGATTATAAATTTAATTGGTAACAAGTTTACCTGGTGCGATGTAGCCCGGAGTGCCTGCAATGACATGGCTGGTCTCGTTGAACCCAGTTGTGTGAAGAATTTTGGCAAGACCAAAATCCGCGATTCTGGGCTTCAGAAATTCATCCAAAAGTATGTTACTCGACTTAACATCCCGGTGGATCACCGGCCGATCACAGCCGTGATGAAGATACTCCAATCCCTTCGCCGCTCCGACGGCAATTTCGTATCTTGTTTCCCAATCCAACTCCATTTTTCTCGACGTGTGAAGCTCGAAACCTCGCTCGTGATGCTGCAATACAGCTTCACCACGTTCACATGGCGGATCGAGCTCAGAGTCTTCACCTCCGAGTCAAATTCCGACGACTTCGTTCTCTGTTTCACCAGAATCGGCGATGAACTCCGGTCCCACGATTCCTCTTTAAGCGACCAATCTCTATCTTTTCCGCTCTTTCTCAAGGTTATGAAGCACCACAACGTCACGCTGAGAAGAATTAATCCGATGGCGAAACAGATGACAAGTGTTTTGACGTCCTTCGACGCGCCAGAACTCTGTGAACATCGCCGTATAAAGTCATCGGCCTCACTGCAGAGGCCAGGGTTTCCGGCAAAGCTTTCTTTATGCGAAAATGTCGAGGGGATTTCACCTGATAGGTCGTTATTGGAGAGATTCAAAGAGTTTAGAACTGGAAGAAAGCCCAGCGACGAAGGTATCTGTCCAGAGAAGAAATTCTCCGCCAGATTGACGATACTCAAAGAATTACACAAGCCGATCGTCTCTGGAATCGAACCGGAAAATTTATTCCCCTGCAATTCGAAGCTATCGAGATTCTTCAAGTCACCAATAGTCGTCGGAAGTTCATCAGAGAATTGA

Coding sequence (CDS)

ATGATTATAAATTTAATTGGTAACAAGTTTACCTGGTGCGATGTAGCCCGGAGTGCCTGCAATGACATGGCTGGTCTCGTTGAACCCAGTTGTGTGAAGAATTTTGGCAAGACCAAAATCCGCGATTCTGGGCTTCAGAAATTCATCCAAAAGTATGTTACTCGACTTAACATCCCGGTGGATCACCGGCCGATCACAGCCGTGATGAAGATACTCCAATCCCTTCGCCGCTCCGACGGCAATTTCGTATCTTGTTTCCCAATCCAACTCCATTTTTCTCGACGTGTGAAGCTCGAAACCTCGCTCGTGATGCTGCAATACAGCTTCACCACGTTCACATGGCGGATCGAGCTCAGAGTCTTCACCTCCGAGTCAAATTCCGACGACTTCGTTCTCTGTTTCACCAGAATCGGCGATGAACTCCGGTCCCACGATTCCTCTTTAAGCGACCAATCTCTATCTTTTCCGCTCTTTCTCAAGGTTATGAAGCACCACAACGTCACGCTGAGAAGAATTAATCCGATGGCGAAACAGATGACAAGTGTTTTGACGTCCTTCGACGCGCCAGAACTCTGTGAACATCGCCGTATAAAGTCATCGGCCTCACTGCAGAGGCCAGGGTTTCCGGCAAAGCTTTCTTTATGCGAAAATGTCGAGGGGATTTCACCTGATAGGTCGTTATTGGAGAGATTCAAAGAGTTTAGAACTGGAAGAAAGCCCAGCGACGAAGGTATCTGTCCAGAGAAGAAATTCTCCGCCAGATTGACGATACTCAAAGAATTACACAAGCCGATCGTCTCTGGAATCGAACCGGAAAATTTATTCCCCTGCAATTCGAAGCTATCGAGATTCTTCAAGTCACCAATAGTCGTCGGAAGTTCATCAGAGAATTGA

Protein sequence

MIINLIGNKFTWCDVARSACNDMAGLVEPSCVKNFGKTKIRDSGLQKFIQKYVTRLNIPVDHRPITAVMKILQSLRRSDGNFVSCFPIQLHFSRRVKLETSLVMLQYSFTTFTWRIELRVFTSESNSDDFVLCFTRIGDELRSHDSSLSDQSLSFPLFLKVMKHHNVTLRRINPMAKQMTSVLTSFDAPELCEHRRIKSSASLQRPGFPAKLSLCENVEGISPDRSLLERFKEFRTGRKPSDEGICPEKKFSARLTILKELHKPIVSGIEPENLFPCNSKLSRFFKSPIVVGSSSEN

Homology

[Close]

BLAST of Lsi04G023080 vs. ExPASy TrEMBL
Match: A0A0E0I156 (Uncharacterized protein OS=Oryza nivara OX=4536 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 1.4e-05
Identity = 41/137 (29.93%), Postives = 60/137 (43.80%), Query Frame = 0


Query: 157 LFLKVMKHHNVTLRRINPMAKQMTSVLTSFDAPELCEHRRIKSSASLQRPGFPAKLSLCE 216
           +  +VM  H+      +P ++ + S+  S D   L     I   ++L      A+ +   
Sbjct: 468 MLTRVMFRHSNMPSGTSPASELLYSMSCSSDR-SLPNVAGISPESALSARSRTARFTQSP 527

Query: 217 NVEGISPDRSLLERFKEFRTGRKPSDEGICPEKKFSARLTILKELHKPIVSGIEPENLFP 276
           +  GI PD S   R++   +   P D G  P  +F  + TI K  H PIVSGI PE  F 
Sbjct: 528 SSGGIRPDSSFCRRWRNASSESFPMDAGKLPLNRFPKKSTICKLEHSPIVSGISPEKSFS 587

Query: 277 CNSKLSRFFKSPIVVGS 294
                SRF + P   GS
Sbjct: 588 YRKSTSRFTRRPTASGS 603

[Close]

BLAST of Lsi04G023080 vs. NCBI nr
Match: KAF7817081.1 (hypothetical protein G2W53_031050 [Senna tora])

HSP 1 Score: 116.7 bits (291), Expect = 3.4e-22
Identity = 103/342 (30.12%), Postives = 146/342 (42.69%), Query Frame = 0


Query: 10  FTWCDVARSACNDMAGLVEPSC-VKNFGKTKIRDSGLQKFIQKYVTRLNIPVDHRPITAV 69
           FT  ++   + NDM G++  +  + N G++KI +  LQ+FIQ+ VTR ++PV+HRP+  +
Sbjct: 84  FTLSNIPMCSRNDMCGILTIALNLNNLGESKISNPRLQEFIQQDVTRFDVPVNHRPLAPM 143

Query: 70  MKILQSLRRSDGNFVSCFPIQLHFSRRVK------------LETSLVMLQYSFTTFTWRI 129
           M++LQ  RRS  NF+   PI+L+F   +K               SL  L + F      +
Sbjct: 144 MQVLQPFRRSHRNFIPFLPIKLYFLTPMKPIPQASIGVSTSASNSLDFLDFDFPIIGLLL 203

Query: 130 ELRVFTSESNSDDFVLCFT-----------------------------RIGDELR----- 189
            L     ES    F +CFT                             RI   ++     
Sbjct: 204 RLLFRPPEST---FHMCFTASSFPFESATLYTFPDPPFPITFSTLMESRISSSVKLSTWK 263

Query: 190 ---SHDSSLSDQSLSFPLFL--KVMKHHNVTLRRINPMAKQMTSVLTSFDAPELCEHRRI 249
              SHDSS +D+SL F +F   K    H  ++ R   M KQM  V T  D  E    + +
Sbjct: 264 DFTSHDSSFNDRSLFFSVFFICKYRARHARSMTR--AMVKQMMRVRTFLDKVEDRGEQGL 323

Query: 250 KS--SASLQRPGFPAKLSLCENVEGISPDRSLLERFKEFRTGRKPSDEGICPEKKFSARL 298
           K    + LQRPGFP++L L    + I P R  L         R+P +        FS   
Sbjct: 324 KELMVSMLQRPGFPSRLPLYLTAQPI-PSRKYLGEILGGSDIRRPVN-------MFSDTS 383

The following BLAST results are available for this feature:

BLAST of Lsi04G023080 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi04G023080 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0E0I156	1.4e-05	29.93	Uncharacterized protein OS=Oryza nivara OX=4536 PE=4 SV=1	[more]

BLAST of Lsi04G023080 vs. NCBI nr


Match Name	E-value	Identity	Description
KAF7817081.1	3.4e-22	30.12	hypothetical protein G2W53_031050 [Senna tora]	[more]

BLAST of Lsi04G023080 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi04G023080.1	Lsi04G023080.1	mRNA