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Lsi04G021270 (gene) Bottle gourd (USVL1VR-Ls) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.CTCTTCCCCTTTCTTTCCCTTTGTTTATTTGGCCATGATTCTCCATTTCCATTTTCTCAGACTCCATAGCTACACATTTTGGAGCTTGTTTCTGTGAGGATGCCTCCAAGACAAGGTTGTAGGCCATTTGAGTGTGTGAGGAGAGCTTGGCATAGTGAAAGGCATCAACCCATTAGAGGTTCTCTTATTCAAGAGATTTTCAGGTTCATTTTTCATCTTTTTTCGCTTAAACCCTTTTCTTGTTTTTGGATATGGAATGTTTAATTGTTTGGGTGTTGTGTGTTGTGTGTTTTAGGGTTGTTAGTGAAGTTCATTGCTCTGCTACTAAGAAGAATAAGGAGTGGCAAGAGAAGCTCCCCATTGTTGTGCTTAAAGCTGAGGAGATTTTGTATTCTAAAGCTGACTCTGAGGTGCCCTTTTTTTTTCTTTATGGTTTTTCTTGAACCTTTATCAAGGTTTCTCTTATGTTTTTGCTATAATGGTCATTTTCTGAACTTAGTGAGAACTATTTTGTTGTTGGGTGTAGCTCTGTTATGTTCTGTTTATTTTATCCTCAACTTAAGGGAAAAAAAAAAAAAAAAAGAAACCTTAGTCCATATTGGCTATCGTTTATATTATAACATGGAATAATTGCCTTGGTGACTTATTTTAGAGGCCAAAAATAAAAAATGCTCCACTTTTTTAATATAACATTAACGGACCTTCTCTTGAGGTACAAGTGAATTTACGAATTTGTCCTTCAGATTTCTTTCTCCTTTCTTCTTTCCTTCTCCTTGTTCCCAAGCGCAAACATAACTTCTCCGGCGGACCAACTTTAATGAAATTCTTTTTTTCCCTCTTCTTCTTCTCTAGTGCGACCAACTTCGTTGAGATCATGCATCAACTCCGGCTATGAGAGAGGAGAAAGAGGGGAGTAATATGTGAGTGAGGAAAGGAAGAGAGAGAGCGAGACGAGCTTTTCTGCGTGTGCAATACATTTTGTCAATTTCACTCGAATTTGACGTTAGCAAAGGGTAAAAAAATCTCGTTTTCGAAAAGTGGGGCAAACTTCATTTTTTTCCCAAAACTTCGGTCATCCGTACAAAACCGGTTTTTGTTTGGGTAAATTATCAAAAATAACCATGAACTATACTTTTTTGTTTAAAAAATAGCTCCCTACTTTCGAAAGTTGCAATATTATCCTTAATCTTTCCTTAAAGTTCATAAACTATCTTGACATTAGAAATCCTTTAGTATTTAAGACGAAAAATAGGATTGGAATGGTGTAGTTTTGAAGAATAGGATTCTTTTTAGATCACTGCCACATCATTCCAAGTCCCAATTTTCGTTCAAAATTCTAAAACATTTCTACTCTAAGTATAGTTTTGAAATGTTTATAATAGTTCAAGAGTAACATTGCAACCTTTGCAAGAGTACGGGTACTTTTGAAAAAACTAGTTAAGTTCAAATATTATATATATATTGTAATTTAGCCCGTAGAATCCTAATATGGACACAAATAAACTCACATTGTTCATCTTTATACATCTGCACAGGCTGAATACATGGATATTACTACACTGTGGGTCCGAATAAATGAAGCGATTAATACGATAATTCGGCTTGATAAGGACACCGAAACTGGGGAGTTTCTTCATCCTTGTATTGAAGGTGCCTCTGCAACATTTAATCTGTTACAACATTTTGTATGTGACCAACTTTTGTATGTATGTCATTAAGAACTAAATGATCAAAAAGGTAACATAAATAAGTTAAAAGATCATAGTTTCGAACTACTGTCACCACTTATTGTCTCAATGTTGTAGGATATCACTGTCGAGTAAGACGTTACGTAGATGATTGTTTGGGATGTATGTGAGTTAGTTGTCACACCTATAGTTACCAGTATATAGGTAGTTTGTGTCCGATATTGAGAATATATGATTTTATTACAATATCGGGTTAGACTCTGAAATGGTTTATCTTGCAAGATTAGTTCAGATGATGATAGATTAAGATTGTTGTTTCGTAGGATCATTTGAGACGCATGTAAGTCTGTTGAGATGCTTACGGTTTATCATTATCAATATCTAGGCTATTGTTATTGAAATATTAGGGTAGTATTTGAAACTAATTAGTTTGAATTTGTATCTGAGGATGAACATGGCTGTTTTATTTATAAATGTTTTGTTATAATTCCTAATCTTTTGTTAAAAAACAATTGCCCTTGTCAGCTGCTCTCTATTTGGGTTGCACGCCGAGAAGATCGTCGAAAAGCAACCGAGGTAGTAATCTGAGGGGCTACCTTAATTCCTGCACTCCACAGGTCTTAGATACACTACCTCACTACACCAACATCATTAGACCAGCTATTTTGAGTTCACAACATTTTTCGTATTGTCCAAATTTGTCAAAGCAGACGAGAAATGTATCGGGAGCCCGACCGAAAAACCAAAACCATGTTGGTGTTCCTAGCACAATCCCTACTTCAACTATATATAAGAATGTTTGGCCATCGATCGATAGCCAACAGTTCCTAACAGAGACCGTTGTTGGATGGAACATGTTTTCTTTGTGTCCATTGTATCATGGAAGCAATCAACACGTTCCCAGTATTGAAATCCAACCAAAGCCGCTCTACAACATTCCGAGTTTCTCCGGTCCAGCTCCGTTTAAGTACTTCCATTCCAACGATGTGATTCCTGCAAGGAAGAGTAGAGTTGATTTGGTAAATAGTACTCTTTACAAGCAACAGAAAACAGCTTGTGATCTATCGTTGCGGTTGGGCCCTCTCTCCATTCCACATCCAAGCATCAACAACGGTCAATCCAAGACGATCAAAGACATCGGTGCTAACGCGTCTCAAAAGAAGATCACGAGTTCTTCTGATTGCACGTTCCAACTAGACAAAACGTTCCCTTTCTTCCCTCTCCATGGTACATATGGTGCATTAGATTCTCATTATTGA CTCTTCCCCTTTCTTTCCCTTTGTTTATTTGGCCATGATTCTCCATTTCCATTTTCTCAGACTCCATAGCTACACATTTTGGAGCTTGTTTCTGTGAGGATGCCTCCAAGACAAGGTTGTAGGCCATTTGAGTGTGTGAGGAGAGCTTGGCATAGTGAAAGGCATCAACCCATTAGAGGTTCTCTTATTCAAGAGATTTTCAGGGTTGTTAGTGAAGTTCATTGCTCTGCTACTAAGAAGAATAAGGAGTGGCAAGAGAAGCTCCCCATTGTTGTGCTTAAAGCTGAGGAGATTTTGTATTCTAAAGCTGACTCTGAGGCTGAATACATGGATATTACTACACTGTGGGTCCGAATAAATGAAGCGATTAATACGATAATTCGGCTTGATAAGGACACCGAAACTGGGGAGTTTCTTCATCCTTGTATTGAAGGTGCCTCTGCAACATTTAATCTGTTACAACATTTTGTATGTGACCAACTTTTGTATTTTCGAACTACTGTCACCACTTATTGTCTCAATGTTGTAGGATATCACTGTCGAGTAAGACGTTACGTAGATGATTGTTTGGGATGTATTTACCAGTATATAGGTAGTTTGTGTCCGATATTGAGAATATATGATTTTATTACAATATCGGCTGCTCTCTATTTGGGTTGCACGCCGAGAAGATCGTCGAAAAGCAACCGAGGTAGTAATCTGAGGGGCTACCTTAATTCCTGCACTCCACAGGTCTTAGATACACTACCTCACTACACCAACATCATTAGACCAGCTATTTTGAGTTCACAACATTTTTCGTATTGTCCAAATTTGTCAAAGCAGACGAGAAATGTATCGGGAGCCCGACCGAAAAACCAAAACCATGTTGGTGTTCCTAGCACAATCCCTACTTCAACTATATATAAGAATGTTTGGCCATCGATCGATAGCCAACAGTTCCTAACAGAGACCGTTGTTGGATGGAACATGTTTTCTTTGTGTCCATTGTATCATGGAAGCAATCAACACGTTCCCAGTATTGAAATCCAACCAAAGCCGCTCTACAACATTCCGAGTTTCTCCGGTCCAGCTCCGTTTAAGTACTTCCATTCCAACGATGTGATTCCTGCAAGGAAGAGTAGAGTTGATTTGGTAAATAGTACTCTTTACAAGCAACAGAAAACAGCTTGTGATCTATCGTTGCGGTTGGGCCCTCTCTCCATTCCACATCCAAGCATCAACAACGGTCAATCCAAGACGATCAAAGACATCGGTGCTAACGCGTCTCAAAAGAAGATCACGAGTTCTTCTGATTGCACGTTCCAACTAGACAAAACGTTCCCTTTCTTCCCTCTCCATGGTACATATGGTGCATTAGATTCTCATTATTGA ATGCCTCCAAGACAAGGTTGTAGGCCATTTGAGTGTGTGAGGAGAGCTTGGCATAGTGAAAGGCATCAACCCATTAGAGGTTCTCTTATTCAAGAGATTTTCAGGGTTGTTAGTGAAGTTCATTGCTCTGCTACTAAGAAGAATAAGGAGTGGCAAGAGAAGCTCCCCATTGTTGTGCTTAAAGCTGAGGAGATTTTGTATTCTAAAGCTGACTCTGAGGCTGAATACATGGATATTACTACACTGTGGGTCCGAATAAATGAAGCGATTAATACGATAATTCGGCTTGATAAGGACACCGAAACTGGGGAGTTTCTTCATCCTTGTATTGAAGGTGCCTCTGCAACATTTAATCTGTTACAACATTTTGTATGTGACCAACTTTTGTATTTTCGAACTACTGTCACCACTTATTGTCTCAATGTTGTAGGATATCACTGTCGAGTAAGACGTTACGTAGATGATTGTTTGGGATGTATTTACCAGTATATAGGTAGTTTGTGTCCGATATTGAGAATATATGATTTTATTACAATATCGGCTGCTCTCTATTTGGGTTGCACGCCGAGAAGATCGTCGAAAAGCAACCGAGGTAGTAATCTGAGGGGCTACCTTAATTCCTGCACTCCACAGGTCTTAGATACACTACCTCACTACACCAACATCATTAGACCAGCTATTTTGAGTTCACAACATTTTTCGTATTGTCCAAATTTGTCAAAGCAGACGAGAAATGTATCGGGAGCCCGACCGAAAAACCAAAACCATGTTGGTGTTCCTAGCACAATCCCTACTTCAACTATATATAAGAATGTTTGGCCATCGATCGATAGCCAACAGTTCCTAACAGAGACCGTTGTTGGATGGAACATGTTTTCTTTGTGTCCATTGTATCATGGAAGCAATCAACACGTTCCCAGTATTGAAATCCAACCAAAGCCGCTCTACAACATTCCGAGTTTCTCCGGTCCAGCTCCGTTTAAGTACTTCCATTCCAACGATGTGATTCCTGCAAGGAAGAGTAGAGTTGATTTGGTAAATAGTACTCTTTACAAGCAACAGAAAACAGCTTGTGATCTATCGTTGCGGTTGGGCCCTCTCTCCATTCCACATCCAAGCATCAACAACGGTCAATCCAAGACGATCAAAGACATCGGTGCTAACGCGTCTCAAAAGAAGATCACGAGTTCTTCTGATTGCACGTTCCAACTAGACAAAACGTTCCCTTTCTTCCCTCTCCATGGTACATATGGTGCATTAGATTCTCATTATTGA MPPRQGCRPFECVRRAWHSERHQPIRGSLIQEIFRVVSEVHCSATKKNKEWQEKLPIVVLKAEEILYSKADSEAEYMDITTLWVRINEAINTIIRLDKDTETGEFLHPCIEGASATFNLLQHFVCDQLLYFRTTVTTYCLNVVGYHCRVRRYVDDCLGCIYQYIGSLCPILRIYDFITISAALYLGCTPRRSSKSNRGSNLRGYLNSCTPQVLDTLPHYTNIIRPAILSSQHFSYCPNLSKQTRNVSGARPKNQNHVGVPSTIPTSTIYKNVWPSIDSQQFLTETVVGWNMFSLCPLYHGSNQHVPSIEIQPKPLYNIPSFSGPAPFKYFHSNDVIPARKSRVDLVNSTLYKQQKTACDLSLRLGPLSIPHPSINNGQSKTIKDIGANASQKKITSSSDCTFQLDKTFPFFPLHGTYGALDSHY Homology
BLAST of Lsi04G021270 vs. ExPASy TrEMBL
Match: A0A0A0LHA1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G878170 PE=4 SV=1) HSP 1 Score: 581.6 bits (1498), Expect = 2.6e-162 Identity = 296/424 (69.81%), Postives = 317/424 (74.76%), Query Frame = 0
BLAST of Lsi04G021270 vs. ExPASy TrEMBL
Match: A0A5A7T5Q7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold92G003710 PE=4 SV=1) HSP 1 Score: 562.8 bits (1449), Expect = 1.2e-156 Identity = 290/424 (68.40%), Postives = 311/424 (73.35%), Query Frame = 0
BLAST of Lsi04G021270 vs. ExPASy TrEMBL
Match: A0A5D3E5M9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G007480 PE=4 SV=1) HSP 1 Score: 562.0 bits (1447), Expect = 2.1e-156 Identity = 289/424 (68.16%), Postives = 311/424 (73.35%), Query Frame = 0
BLAST of Lsi04G021270 vs. ExPASy TrEMBL
Match: A0A1S3CR62 (uncharacterized protein LOC103503829 OS=Cucumis melo OX=3656 GN=LOC103503829 PE=4 SV=1) HSP 1 Score: 562.0 bits (1447), Expect = 2.1e-156 Identity = 289/424 (68.16%), Postives = 311/424 (73.35%), Query Frame = 0
BLAST of Lsi04G021270 vs. ExPASy TrEMBL
Match: A0A6J1FPE4 (uncharacterized protein LOC111445784 OS=Cucurbita moschata OX=3662 GN=LOC111445784 PE=4 SV=1) HSP 1 Score: 513.8 bits (1322), Expect = 6.6e-142 Identity = 274/427 (64.17%), Postives = 298/427 (69.79%), Query Frame = 0
BLAST of Lsi04G021270 vs. NCBI nr
Match: XP_038899374.1 (uncharacterized protein LOC120086684 [Benincasa hispida]) HSP 1 Score: 609.0 bits (1569), Expect = 3.1e-170 Identity = 309/423 (73.05%), Postives = 321/423 (75.89%), Query Frame = 0
BLAST of Lsi04G021270 vs. NCBI nr
Match: XP_011652481.1 (uncharacterized protein LOC101219225 [Cucumis sativus] >KGN60097.1 hypothetical protein Csa_002319 [Cucumis sativus]) HSP 1 Score: 581.6 bits (1498), Expect = 5.4e-162 Identity = 296/424 (69.81%), Postives = 317/424 (74.76%), Query Frame = 0
BLAST of Lsi04G021270 vs. NCBI nr
Match: KAA0038814.1 (uncharacterized protein E6C27_scaffold92G003710 [Cucumis melo var. makuwa]) HSP 1 Score: 562.8 bits (1449), Expect = 2.6e-156 Identity = 290/424 (68.40%), Postives = 311/424 (73.35%), Query Frame = 0
BLAST of Lsi04G021270 vs. NCBI nr
Match: XP_008466415.1 (PREDICTED: uncharacterized protein LOC103503829 [Cucumis melo] >TYK31437.1 uncharacterized protein E5676_scaffold455G007480 [Cucumis melo var. makuwa]) HSP 1 Score: 562.0 bits (1447), Expect = 4.4e-156 Identity = 289/424 (68.16%), Postives = 311/424 (73.35%), Query Frame = 0
BLAST of Lsi04G021270 vs. NCBI nr
Match: KAG7031797.1 (hypothetical protein SDJN02_05838, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 515.0 bits (1325), Expect = 6.2e-142 Identity = 275/427 (64.40%), Postives = 298/427 (69.79%), Query Frame = 0
BLAST of Lsi04G021270 vs. TAIR 10
Match: AT4G32295.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G24150.1); Has 39 Blast hits to 39 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 178.7 bits (452), Expect = 9.7e-45 Identity = 97/204 (47.55%), Postives = 117/204 (57.35%), Query Frame = 0
BLAST of Lsi04G021270 vs. TAIR 10
Match: AT3G24150.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G32295.1); Has 50 Blast hits to 50 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 7; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). ) HSP 1 Score: 171.4 bits (433), Expect = 1.6e-42 Identity = 76/111 (68.47%), Postives = 94/111 (84.68%), Query Frame = 0
BLAST of Lsi04G021270 vs. TAIR 10
Match: AT4G32295.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G24150.1); Has 34 Blast hits to 34 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 76.3 bits (186), Expect = 6.8e-14 Identity = 52/141 (36.88%), Postives = 61/141 (43.26%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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