Lsi04G021110 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi04G021110
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Beta-1,3-N-Acetylglucosaminyltransferase family protein, putative
Location	chr04: 28247826 .. 28248828 (-)
RNA-Seq Expression	Lsi04G021110
Synteny	Lsi04G021110

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCATATTGAATTGAAAAAGAAAATCACAAATTAAAAGTATGGTTGCCTCCATCATCAAGTTTCTATGTGTACTCTTCTTCTTTTGTCTCCTCTCCAAAGGTATATATATATATTCATCTCAAAATTTCATAATATTTTAGCTTCAATCTTTTAACGAGTTCAAAATTGAAATTAAAATCAAAATTTTGTTTATGTATCCATCGAGAATATTACGATCAAAGTTTCATATTGATATAACTGAAATACTATCTCTATTGATATATATAAAACCCTTTGATTTAACCTAAAGCAAAGTCACGAGAGTTTATATGTTCAAGTGGACAATATCACTCTGTTGTAAATGTATCATAAGTTGTCTCACGTAGTTTTTAAAACTTTTCTTATAAGAAAAAATACTCGTGATTTTTTTCACTAATACATTCAACTTCATATACGTGTTTCTTTGAGACTTATATGCATAAACATCTACTCTTCAAGTGACATATGTCACATGTTAGGTTTCTACTAAACGATCAATAACAACGATATGACAAATATAACATTACATTTTAATATTGTTTTGGATTTTTTTTTTCAGGCAATTGCCAATGCACATTGGATGAGATAACAATCAGTCAAAGTACAACTGGAAAAGAAGTGAATGGGAAGCAAGAATGGAGAGCCACAATCATAAACAATTGTGTTTGTTCACAATATAGTGTGAAATTGGACTGCAATGGATTTAACACAGTTGAGAAGGTTGATGAATCAATCTTAATGGTTGCTGGCTCAGTGTGTTTGGTTAACAATGGTCAGCCAATCTTTAAATCAAATCCCATTTCCTTCACTTATGCTTGGGATAATGCCTTTGCTTTTAAGCCCCTCTTCTCTCAAATTGCTTGTTCTTAACTTCTCTTTCCTTATTTATTTACCAACAATAATGGGCAAAGTTTGTATTGGCCTTTAATTATATGAATTTTATTTCAATTTTCTTTAGTATCAATAATAGTGAACTCTTTTTTTA

mRNA sequence

CCATATTGAATTGAAAAAGAAAATCACAAATTAAAAGTATGGTTGCCTCCATCATCAAGTTTCTATGTGTACTCTTCTTCTTTTGTCTCCTCTCCAAAGGCAATTGCCAATGCACATTGGATGAGATAACAATCAGTCAAAGTACAACTGGAAAAGAAGTGAATGGGAAGCAAGAATGGAGAGCCACAATCATAAACAATTGTGTTTGTTCACAATATAGTGTGAAATTGGACTGCAATGGATTTAACACAGTTGAGAAGGTTGATGAATCAATCTTAATGGTTGCTGGCTCAGTGTGTTTGGTTAACAATGGTCAGCCAATCTTTAAATCAAATCCCATTTCCTTCACTTATGCTTGGGATAATGCCTTTGCTTTTAAGCCCCTCTTCTCTCAAATTGCTTGTTCTTAACTTCTCTTTCCTTATTTATTTACCAACAATAATGGGCAAAGTTTGTATTGGCCTTTAATTATATGAATTTTATTTCAATTTTCTTTAGTATCAATAATAGTGAACTCTTTTTTTA

Coding sequence (CDS)

ATGGTTGCCTCCATCATCAAGTTTCTATGTGTACTCTTCTTCTTTTGTCTCCTCTCCAAAGGCAATTGCCAATGCACATTGGATGAGATAACAATCAGTCAAAGTACAACTGGAAAAGAAGTGAATGGGAAGCAAGAATGGAGAGCCACAATCATAAACAATTGTGTTTGTTCACAATATAGTGTGAAATTGGACTGCAATGGATTTAACACAGTTGAGAAGGTTGATGAATCAATCTTAATGGTTGCTGGCTCAGTGTGTTTGGTTAACAATGGTCAGCCAATCTTTAAATCAAATCCCATTTCCTTCACTTATGCTTGGGATAATGCCTTTGCTTTTAAGCCCCTCTTCTCTCAAATTGCTTGTTCTTAA

Protein sequence

MVASIIKFLCVLFFFCLLSKGNCQCTLDEITISQSTTGKEVNGKQEWRATIINNCVCSQYSVKLDCNGFNTVEKVDESILMVAGSVCLVNNGQPIFKSNPISFTYAWDNAFAFKPLFSQIACS

Homology

[Close]

BLAST of Lsi04G021110 vs. ExPASy Swiss-Prot
Match: Q1G3T1 (TPD1 protein homolog 1 OS=Arabidopsis thaliana OX=3702 GN=TDL1 PE=2 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 3.3e-06
Identity = 29/101 (28.71%), Postives = 53/101 (52.48%), Query Frame = 0


Query: 25  CTLDEITISQSTTGKEVNGKQEWRATIINNCV--CSQYSVKLDCNGFNTVEKVDESIL-M 84
           C+ D+I + Q +T    +G   +   I N+CV  C+   + + C  F++V  V+  +   
Sbjct: 80  CSKDDIVLFQGSTNPLPSGVPSYTVEIFNSCVSDCNIAEIHVSCGWFSSVRLVNPRVFRR 139

Query: 85  VAGSVCLVNNGQPIFKSNPISFTYAWDNAFAFKPLFSQIAC 123
           +    CLVN+GQP+     +SF YA  N+F++    + ++C
Sbjct: 140 LDYDDCLVNDGQPLGPGQSLSFQYA--NSFSYPLSVASVSC 178

[Close]

BLAST of Lsi04G021110 vs. ExPASy Swiss-Prot
Match: A8MS78 (Uncharacterized protein At1g05835 OS=Arabidopsis thaliana OX=3702 GN=At1g05835 PE=2 SV=1)

HSP 1 Score: 45.8 bits (107), Expect = 4.0e-04
Identity = 23/81 (28.40%), Postives = 43/81 (53.09%), Query Frame = 0


Query: 45  QEWRATIINNC-VCSQYSVKLDCNGF--NTVEKVDESILMVAGSVCLVNNGQPIFKSNPI 104
           +++R  ++N C +C   +++L C GF  + V+     +L  +   C+VN+G P+     +
Sbjct: 46  KKFRVEVMNKCPMCPIINLRLKCQGFPQSLVDPTFLRVLSSSAGNCVVNDGLPLSPMQTL 105

Query: 105 SFTYAWDNAFAFKPLFSQIAC 123
           SF Y+  + FA +PL     C
Sbjct: 106 SFNYSNTHQFALRPLSWSFQC 126

[Close]

BLAST of Lsi04G021110 vs. ExPASy TrEMBL
Match: A0A0A0LDN0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G875990 PE=4 SV=1)

HSP 1 Score: 214.5 bits (545), Expect = 2.4e-52
Identity = 102/123 (82.93%), Postives = 112/123 (91.06%), Query Frame = 0


Query: 1   MVASIIKFLCVLFFFCLLSKGNCQCTLDEITISQSTTGKEVNGKQEWRATIINNCVCSQY 60
           MVAS I +  +LFFFCLLSKGNC+C++++I ISQSTTG+EVNGKQEWRATI N CVCSQY
Sbjct: 1   MVAS-INYFYLLFFFCLLSKGNCECSMNDIEISQSTTGREVNGKQEWRATIRNKCVCSQY 60

Query: 61  SVKLDCNGFNTVEKVDESILMVAGSVCLVNNGQPIFKSNPISFTYAWDNAFAFKPLFSQI 120
           SVK DCNGFNTVEKVDESILMVAGSVCLVNNGQPIF S+PISFTYAWDNAF F PLFSQ+
Sbjct: 61  SVKFDCNGFNTVEKVDESILMVAGSVCLVNNGQPIFNSSPISFTYAWDNAFPFSPLFSQV 120

Query: 121 ACS 124
           ACS
Sbjct: 121 ACS 122

[Close]

BLAST of Lsi04G021110 vs. ExPASy TrEMBL
Match: A0A0A0LEA1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G875970 PE=4 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 1.3e-45
Identity = 93/123 (75.61%), Postives = 105/123 (85.37%), Query Frame = 0


Query: 1   MVASIIKFLCVLFFFCLLSKGNCQCTLDEITISQSTTGKEVNGKQEWRATIINNCVCSQY 60
           MVAS IKF+CVLFFFCLLSKGNC+C L++I ISQ+TTG  V GKQ W+ATI NNC+C Q 
Sbjct: 1   MVAS-IKFVCVLFFFCLLSKGNCECVLNDIAISQTTTGSIVQGKQVWKATITNNCICGQS 60

Query: 61  SVKLDCNGFNTVEKVDESILMVAGSVCLVNNGQPIFKSNPISFTYAWDNAFAFKPLFSQI 120
           S+KLDCNGFNTV+ VD SIL V+GSVCLVN GQPIF+S PISFTYA DNAF FKPL SQI
Sbjct: 61  SLKLDCNGFNTVQAVDPSILAVSGSVCLVNGGQPIFQSTPISFTYASDNAFPFKPLSSQI 120

Query: 121 ACS 124
           +CS
Sbjct: 121 SCS 122

[Close]

BLAST of Lsi04G021110 vs. ExPASy TrEMBL
Match: A0A6J1CKK7 (uncharacterized protein At1g05835-like OS=Momordica charantia OX=3673 GN=LOC111012144 PE=4 SV=1)

HSP 1 Score: 173.7 bits (439), Expect = 4.7e-40
Identity = 83/123 (67.48%), Postives = 96/123 (78.05%), Query Frame = 0


Query: 1   MVASIIKFLCVLFFFCLLSKGNCQCTLDEITISQSTTGKEVNGKQEWRATIINNCVCSQY 60
           MVAS IK LC LFFFCLLSKGNCQC+L +I+I Q  T K V G+QEW  T+ NNCVCSQY
Sbjct: 1   MVAS-IKLLCALFFFCLLSKGNCQCSLGDISIKQEATEKRVGGQQEWLVTVSNNCVCSQY 60

Query: 61  SVKLDCNGFNTVEKVDESILMVAGSVCLVNNGQPIFKSNPISFTYAWDNAFAFKPLFSQI 120
           +VKLDC GF++ E VD S L   G+ CL+N G+PIFKS+PISFTYAWD  F FKPL SQ+
Sbjct: 61  NVKLDCTGFSSEEIVDSSKLTNTGNECLINGGRPIFKSDPISFTYAWDLIFPFKPLSSQV 120

Query: 121 ACS 124
           ACS
Sbjct: 121 ACS 122

[Close]

BLAST of Lsi04G021110 vs. ExPASy TrEMBL
Match: A0A7N2M2J3 (Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 1.9e-33
Identity = 70/122 (57.38%), Postives = 88/122 (72.13%), Query Frame = 0


Query: 2   VASIIKFLCVLFFFCLLSKGNCQCTLDEITISQSTTGKEVNGKQEWRATIINNCVCSQYS 61
           +A+ IKFLCVLF    + KGNCQCTL ++TI QS TG+ V  K  W  TI N C+CSQ  
Sbjct: 1   MATFIKFLCVLFVLSFVGKGNCQCTLSQVTIKQSKTGEVVQQKPVWSVTINNGCLCSQSD 60

Query: 62  VKLDCNGFNTVEKVDESILMVAGSVCLVNNGQPIFKSNPISFTYAWDNAFAFKPLFSQIA 121
           +KL CNGF TV+ VD S+L  +G+ CLVNNG P+  S+ +SFTYAWD +F+F+PL SQI 
Sbjct: 61  LKLSCNGFQTVKPVDPSVLSKSGNECLVNNGVPVAPSSSLSFTYAWDTSFSFQPLSSQIN 120

Query: 122 CS 124
           CS
Sbjct: 121 CS 122

[Close]

BLAST of Lsi04G021110 vs. ExPASy TrEMBL
Match: A0A067F358 (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g040068mg PE=4 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 5.6e-33
Identity = 66/123 (53.66%), Postives = 89/123 (72.36%), Query Frame = 0


Query: 2   VASIIKFLCVLFFFCLLSKGNCQCTLDEITISQSTTGKEVNGKQEWRATIINNCVCSQYS 61
           +A+I+KFL  +  F +++KGNCQCTLD+I +SQS TGK V  KQEWR T+ N C+C+Q  
Sbjct: 1   MAAILKFLAAIMLFTIITKGNCQCTLDDIKVSQSQTGKTVPNKQEWRLTLNNTCICTQLE 60

Query: 62  VKLDCNGFNTVEKVDESILMVAGSVC-LVNNGQPIFKSNPISFTYAWDNAFAFKPLFSQI 121
           +KL C GF TVE +D SI+ ++G  C +VNNG P +    +SF YAWD +F FKP+ SQI
Sbjct: 61  LKLSCKGFQTVEPIDPSIIAISGDECTVVNNGNPFYGFTTLSFNYAWDTSFPFKPISSQI 120

Query: 122 ACS 124
           +CS
Sbjct: 121 SCS 123

[Close]

BLAST of Lsi04G021110 vs. NCBI nr
Match: XP_038896903.1 (TPD1 protein homolog 1-like [Benincasa hispida])

HSP 1 Score: 227.6 bits (579), Expect = 5.7e-56
Identity = 109/123 (88.62%), Postives = 117/123 (95.12%), Query Frame = 0


Query: 1   MVASIIKFLCVLFFFCLLSKGNCQCTLDEITISQSTTGKEVNGKQEWRATIINNCVCSQY 60
           MVAS IKFLCVLFFFCLLSKG  QC++++ITISQSTTGKEVNGKQEWRATI NNCVCSQY
Sbjct: 1   MVAS-IKFLCVLFFFCLLSKGKSQCSMNDITISQSTTGKEVNGKQEWRATITNNCVCSQY 60

Query: 61  SVKLDCNGFNTVEKVDESILMVAGSVCLVNNGQPIFKSNPISFTYAWDNAFAFKPLFSQI 120
           SVK DCNGFN+VEKVDESILMVAGS CLVNNGQP+FKSNPISFTYAWDNAF+FKPLFSQ+
Sbjct: 61  SVKFDCNGFNSVEKVDESILMVAGSECLVNNGQPMFKSNPISFTYAWDNAFSFKPLFSQV 120

Query: 121 ACS 124
           ACS
Sbjct: 121 ACS 122

[Close]

BLAST of Lsi04G021110 vs. NCBI nr
Match: KGN60075.1 (hypothetical protein Csa_001952 [Cucumis sativus])

HSP 1 Score: 214.5 bits (545), Expect = 5.0e-52
Identity = 102/123 (82.93%), Postives = 112/123 (91.06%), Query Frame = 0


Query: 1   MVASIIKFLCVLFFFCLLSKGNCQCTLDEITISQSTTGKEVNGKQEWRATIINNCVCSQY 60
           MVAS I +  +LFFFCLLSKGNC+C++++I ISQSTTG+EVNGKQEWRATI N CVCSQY
Sbjct: 1   MVAS-INYFYLLFFFCLLSKGNCECSMNDIEISQSTTGREVNGKQEWRATIRNKCVCSQY 60

Query: 61  SVKLDCNGFNTVEKVDESILMVAGSVCLVNNGQPIFKSNPISFTYAWDNAFAFKPLFSQI 120
           SVK DCNGFNTVEKVDESILMVAGSVCLVNNGQPIF S+PISFTYAWDNAF F PLFSQ+
Sbjct: 61  SVKFDCNGFNTVEKVDESILMVAGSVCLVNNGQPIFNSSPISFTYAWDNAFPFSPLFSQV 120

Query: 121 ACS 124
           ACS
Sbjct: 121 ACS 122

[Close]

BLAST of Lsi04G021110 vs. NCBI nr
Match: XP_022141896.1 (uncharacterized protein At1g05835-like [Momordica charantia])

HSP 1 Score: 173.7 bits (439), Expect = 9.8e-40
Identity = 83/123 (67.48%), Postives = 96/123 (78.05%), Query Frame = 0


Query: 1   MVASIIKFLCVLFFFCLLSKGNCQCTLDEITISQSTTGKEVNGKQEWRATIINNCVCSQY 60
           MVAS IK LC LFFFCLLSKGNCQC+L +I+I Q  T K V G+QEW  T+ NNCVCSQY
Sbjct: 1   MVAS-IKLLCALFFFCLLSKGNCQCSLGDISIKQEATEKRVGGQQEWLVTVSNNCVCSQY 60

Query: 61  SVKLDCNGFNTVEKVDESILMVAGSVCLVNNGQPIFKSNPISFTYAWDNAFAFKPLFSQI 120
           +VKLDC GF++ E VD S L   G+ CL+N G+PIFKS+PISFTYAWD  F FKPL SQ+
Sbjct: 61  NVKLDCTGFSSEEIVDSSKLTNTGNECLINGGRPIFKSDPISFTYAWDLIFPFKPLSSQV 120

Query: 121 ACS 124
           ACS
Sbjct: 121 ACS 122

[Close]

BLAST of Lsi04G021110 vs. NCBI nr
Match: XP_030926576.1 (TPD1 protein homolog 1-like [Quercus lobata])

HSP 1 Score: 151.8 bits (382), Expect = 4.0e-33
Identity = 70/122 (57.38%), Postives = 88/122 (72.13%), Query Frame = 0


Query: 2   VASIIKFLCVLFFFCLLSKGNCQCTLDEITISQSTTGKEVNGKQEWRATIINNCVCSQYS 61
           +A+ IKFLCVLF    + KGNCQCTL ++TI QS TG+ V  K  W  TI N C+CSQ  
Sbjct: 1   MATFIKFLCVLFVLSFVGKGNCQCTLSQVTIKQSKTGEVVQQKPVWSVTINNGCLCSQSD 60

Query: 62  VKLDCNGFNTVEKVDESILMVAGSVCLVNNGQPIFKSNPISFTYAWDNAFAFKPLFSQIA 121
           +KL CNGF TV+ VD S+L  +G+ CLVNNG P+  S+ +SFTYAWD +F+F+PL SQI 
Sbjct: 61  LKLSCNGFQTVKPVDPSVLSKSGNECLVNNGVPVAPSSSLSFTYAWDTSFSFQPLSSQIN 120

Query: 122 CS 124
           CS
Sbjct: 121 CS 122

[Close]

BLAST of Lsi04G021110 vs. NCBI nr
Match: XP_006450371.1 (uncharacterized protein At1g05835 [Citrus clementina] >XP_006483715.1 uncharacterized protein At1g05835-like [Citrus sinensis] >ESR63611.1 hypothetical protein CICLE_v10009917mg [Citrus clementina] >GAY45889.1 hypothetical protein CUMW_092790 [Citrus unshiu])

HSP 1 Score: 150.2 bits (378), Expect = 1.2e-32
Identity = 66/123 (53.66%), Postives = 89/123 (72.36%), Query Frame = 0


Query: 2   VASIIKFLCVLFFFCLLSKGNCQCTLDEITISQSTTGKEVNGKQEWRATIINNCVCSQYS 61
           +A+I+KFL  +  F +++KGNCQCTLD+I +SQS TGK V  KQEWR T+ N C+C+Q  
Sbjct: 1   MAAILKFLAAIMLFTIITKGNCQCTLDDIKVSQSQTGKTVPNKQEWRLTLNNTCICTQLG 60

Query: 62  VKLDCNGFNTVEKVDESILMVAGSVC-LVNNGQPIFKSNPISFTYAWDNAFAFKPLFSQI 121
           +KL C GF TVE +D SI+ ++G  C +VNNG P +    +SF YAWD +F FKP+ SQI
Sbjct: 61  LKLSCKGFQTVEPIDPSIIAISGDECTVVNNGNPFYGFTTLSFNYAWDTSFPFKPISSQI 120

Query: 122 ACS 124
           +CS
Sbjct: 121 SCS 123

[Close]

BLAST of Lsi04G021110 vs. TAIR 10
Match: AT4G32110.1 (Beta-1,3-N-Acetylglucosaminyltransferase family protein )

HSP 1 Score: 89.7 bits (221), Expect = 1.7e-18
Identity = 44/123 (35.77%), Postives = 68/123 (55.28%), Query Frame = 0


Query: 1   MVASIIKFLCVLFFFCLLSKGNCQCTLDEITISQSTTGKEVNGKQEWRATIINNC-VCSQ 60
           M ++  K LC++ F   +++G   C+L+ +++ QS TGK V  K EW   + N C  C  
Sbjct: 1   MASNACKLLCLVLFLAFVNQGYGDCSLNSLSVKQSKTGKLVQNKPEWEVRVTNPCNNCKF 60

Query: 61  YSVKLDCNGFNTVEKVDESILMVAGSVCLVNNGQPIFKSNPISFTYAWDNAFAFKPLFSQ 120
            + +L C GFN+V  +D S+L+ +G  CLVN G+ I     I F Y WD +F  K +   
Sbjct: 61  QNTELLCVGFNSVTPIDTSLLLKSGDACLVNAGKFIVPHVDIVFKYVWDTSFDLKVIDGV 120

Query: 121 IAC 123
           + C
Sbjct: 121 MVC 123

[Close]

BLAST of Lsi04G021110 vs. TAIR 10
Match: AT4G32105.1 (Beta-1,3-N-Acetylglucosaminyltransferase family protein )

HSP 1 Score: 85.5 bits (210), Expect = 3.3e-17
Identity = 44/123 (35.77%), Postives = 63/123 (51.22%), Query Frame = 0


Query: 1   MVASIIKFLCVLFFFCLLSKGNCQCTLDEITISQSTTGKEVNGKQEWRATIINNC-VCSQ 60
           M ++  K LC++ F   +++G   C L+ +++ QS TGK V  K EW   + N C  C  
Sbjct: 1   MASNACKVLCLVLFLAFVNQGYGDCHLNYLSVKQSKTGKLVQNKPEWEVRVTNPCNNCKF 60

Query: 61  YSVKLDCNGFNTVEKVDESILMVAGSVCLVNNGQPIFKSNPISFTYAWDNAFAFKPLFSQ 120
              KL C GF +V  V  S+L  +G +CL+N G  IF      F Y WD +F  K +   
Sbjct: 61  QYTKLSCVGFQSVTPVATSLLSKSGDICLLNAGNFIFPHVDFVFNYVWDTSFDLKVIDGV 120

Query: 121 IAC 123
           I C
Sbjct: 121 IVC 123

[Close]

BLAST of Lsi04G021110 vs. TAIR 10
Match: AT4G32100.1 (Beta-1,3-N-Acetylglucosaminyltransferase family protein )

HSP 1 Score: 80.9 bits (198), Expect = 8.0e-16
Identity = 42/125 (33.60%), Postives = 65/125 (52.00%), Query Frame = 0


Query: 1   MVASIIKFLCVLFFFCLLSK--GNCQCTLDEITISQSTTGKEVNGKQEWRATIINNCVCS 60
           M  +  KFLC++  F  +++  G+   +L+ +++ QS TG  V  K EW   ++N+  C 
Sbjct: 1   MATNACKFLCLVLLFAFVTQGYGDDSYSLESLSVIQSKTGNMVENKPEWEVKVLNSSPCY 60

Query: 61  QYSVKLDCNGFNTVEKVDESILMVAGSVCLVNNGQPIFKSNPISFTYAWDNAFAFKPLFS 120
                L C  F +V  +D  +L  +G  CL+ NG  I   + ISF Y WD +F  K +  
Sbjct: 61  FTHTTLSCVRFKSVTPIDSKVLSKSGDTCLLGNGDSI---HDISFKYVWDTSFDLKVVDG 120

Query: 121 QIACS 124
            IACS
Sbjct: 121 YIACS 122

[Close]

BLAST of Lsi04G021110 vs. TAIR 10
Match: AT4G32090.1 (Beta-1,3-N-Acetylglucosaminyltransferase family protein )

HSP 1 Score: 78.2 bits (191), Expect = 5.2e-15
Identity = 40/119 (33.61%), Postives = 61/119 (51.26%), Query Frame = 0


Query: 2   VASIIKFLCVLFFFCLLSKGNCQCTLDEITISQSTTGKEVNGKQEWRATIINNCVCSQYS 61
           +A  +K   V+    ++S G C CT  +I I    TG+E+ G+ EW+ T+IN C C Q  
Sbjct: 1   MAFALKCFVVVLLLSMVSHGLCLCTFGKIQIGAVRTGREIGGQPEWKVTVINTCNCFQKH 60

Query: 62  VKLDCNGFNTVEKVDESILMVAGSVCLVNNGQPIFKSNPISFTYAWDNAFAFKPLFSQI 121
           V L C GF   + V   +L   G+ CL+  G  +       FTYA    + F+P+ S++
Sbjct: 61  VTLSCGGFAPAKPVKPLLLQPQGNTCLMIKGAALPAGATAQFTYA-GQPYIFRPVGSKV 118

[Close]

BLAST of Lsi04G021110 vs. TAIR 10
Match: AT1G32583.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: tapetum determinant 1 (TAIR:AT4G24972.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 52.8 bits (125), Expect = 2.3e-07
Identity = 29/101 (28.71%), Postives = 53/101 (52.48%), Query Frame = 0


Query: 25  CTLDEITISQSTTGKEVNGKQEWRATIINNCV--CSQYSVKLDCNGFNTVEKVDESIL-M 84
           C+ D+I + Q +T    +G   +   I N+CV  C+   + + C  F++V  V+  +   
Sbjct: 80  CSKDDIVLFQGSTNPLPSGVPSYTVEIFNSCVSDCNIAEIHVSCGWFSSVRLVNPRVFRR 139

Query: 85  VAGSVCLVNNGQPIFKSNPISFTYAWDNAFAFKPLFSQIAC 123
           +    CLVN+GQP+     +SF YA  N+F++    + ++C
Sbjct: 140 LDYDDCLVNDGQPLGPGQSLSFQYA--NSFSYPLSVASVSC 178

The following BLAST results are available for this feature:

BLAST of Lsi04G021110 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q1G3T1	3.3e-06	28.71	TPD1 protein homolog 1 OS=Arabidopsis thaliana OX=3702 GN=TDL1 PE=2 SV=1	[more]
A8MS78	4.0e-04	28.40	Uncharacterized protein At1g05835 OS=Arabidopsis thaliana OX=3702 GN=At1g05835 P...	[more]

BLAST of Lsi04G021110 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LDN0	2.4e-52	82.93	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G875990 PE=4 SV=1	[more]
A0A0A0LEA1	1.3e-45	75.61	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G875970 PE=4 SV=1	[more]
A0A6J1CKK7	4.7e-40	67.48	uncharacterized protein At1g05835-like OS=Momordica charantia OX=3673 GN=LOC1110...	[more]
A0A7N2M2J3	1.9e-33	57.38	Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1	[more]
A0A067F358	5.6e-33	53.66	Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g040068mg PE=4 SV=1	[more]

BLAST of Lsi04G021110 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038896903.1	5.7e-56	88.62	TPD1 protein homolog 1-like [Benincasa hispida]	[more]
KGN60075.1	5.0e-52	82.93	hypothetical protein Csa_001952 [Cucumis sativus]	[more]
XP_022141896.1	9.8e-40	67.48	uncharacterized protein At1g05835-like [Momordica charantia]	[more]
XP_030926576.1	4.0e-33	57.38	TPD1 protein homolog 1-like [Quercus lobata]	[more]
XP_006450371.1	1.2e-32	53.66	uncharacterized protein At1g05835 [Citrus clementina] >XP_006483715.1 uncharacte...	[more]

BLAST of Lsi04G021110 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G32110.1	1.7e-18	35.77	Beta-1,3-N-Acetylglucosaminyltransferase family protein	[more]
AT4G32105.1	3.3e-17	35.77	Beta-1,3-N-Acetylglucosaminyltransferase family protein	[more]
AT4G32100.1	8.0e-16	33.60	Beta-1,3-N-Acetylglucosaminyltransferase family protein	[more]
AT4G32090.1	5.2e-15	33.61	Beta-1,3-N-Acetylglucosaminyltransferase family protein	[more]
AT1G32583.1	2.3e-07	28.71	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow...	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR040361	Tapetum determinant 1	PANTHER	PTHR33184	PROTEIN TAPETUM DETERMINANT 1-LIKE-RELATED	coord: 1..123
None	No IPR available	PANTHER	PTHR33184:SF44	BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE FAMILY PROTEIN	coord: 1..123

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi04G021110.1	Lsi04G021110.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0001709	cell fate determination