Lsi04G020630 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi04G020630
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
DescriptionUnknown protein
Locationchr04: 27746734 .. 27750291 (-)
RNA-Seq ExpressionLsi04G020630
SyntenyLsi04G020630
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATAATTCGTACACGTCAGGTCGTTGATACGCGAGAGGAGAGCGGCTTGAGTGGAGTGAAAGCAGGGAAGCTGGTAGCAGCGACGATCGTCGGAGGAGGAGCGGTGAGAAGCATGGTGGAGGTGGCCTATGATGCAACAAAAGGGACAGCGGAGAATGTGAAGGACATAGTTATTGCAGAGGCGAATGAAAATGTGGTGGACACTACTGAGTACAGAAGCATGGAGGATAAGGGTAAATATCAAAACATCTTATTCTGTTTTTCTAATTCATCCCAATTGGGTCGGATGCATATGAATAAGTGTAGTTTAGGATATCATCTATTTAGGCCTATCGGATAATATTCATGTTTCCTGTTTCTTCATATATATGTTTAAATTTGATCGGTGTTGTCACCTCTAACTTGAGTTATTTGTCTTCATTGATGTTGAGTCAAATTCAACTTAATTATATTATTATGTAAATGTCGTGGTTGTAAAATATTAAAGTTAAACTAAATGAATATCTTAATCATAAAAATTTATATATGGTAAAATTCTACTCGATTTTAGATATACTAAAATATTATAATTAAAATAATATATACACACTCAAATTGCAAAATTTAATACTTAAAAGTTGAAATATAAAAAATTAATATACATATTGAAATTAAAATAATATATAAATCTAAATATTGGAGGATTTTAAATTTGAAAATTAAAATAAAATATTAATATAGTAAAATTATTTTTGTAAATAGTAAAATAATAAAATATAAAAGATGAAAATAAATATAAAACAAACAAAAACATGATAAAAAAAACAAAATAAAAGTGTCCAATTTGGAGGAGGTTGAAATTTGGAAAATTAAAAAATTAATGTACGTATTAAAATTTAAAATAATATATAAATCTAAATATTGAAGAATTTTAAAATTAAAAATTAAAATAAAGTATAAATCTAGCATAATAATTTTTTTTTGTAAATAACAAAATTAATAAATAAAATATAAAAGAAAAAACTAAATAAAAGAGTTTAACCTAAGAGTTGAATACACAACCAAACCAAGAGGTGAAGGAGTAGTATGGGTGTGCACGATTACCAATAGAGTAAAGATGAGTTTTGATAAATAAAAGAAACGGTATTGGATAAAACAGAAACAGCATATGAAGAAACTAATTTTTGTAGTTTCTCAATTTTGGCCCCATTTTCATAAACGTTTCTCAAATTCTAAAAAAAAGAAACGGGAATGGTTATCAAACAAGTCAATTTCTTAAAAAAATGAGAAACAAAAACAGAAAACGAGAACGTTATCAAACGGGTTTTTATTTAGATCGTCCTGTTTTCTGTCTTTTTTATGTACTAAAACATGCCCATATTTTTTTTTTGGTAACTATTTCTCTATTTCTTGAAAAAAAAAAAAAGAAATAGAAATATAAAAATGTTTGATAACATTTTTTTTAATATATTTTTTCTATACTATTTTGATTTTTCCTTGTTTGTTTAAATATAATTTAGTTATATAATATAAAAAGATAAATAACATACATCAAAATGTATAAAAAAAAAACAATTATCAAATGTTTACATTATCTAATACAAATAAGTTCAGATTAACGATCTATCCTTCAAATGTTGTCCAAATTTGATATGCAAGGTTAATTATTACTCGAGTCATTCGCTTCAATAATATCTACTTTATATCCAATTATGTTATATTGCTATATAATATTAAATATTAAGGTATGACTAAATATATGTCTAAATGAACCAAATTTATTTATAAAAAAAAAAAGGTATATGTAGTAACCATTCATATTCAAAATGCAAAACTAAAATAATATAGAAAACTTTTAAATTTTAAATTAAAATAATATATTAATATATATTGCAAAATTAAATTCAAATTTAAAATAGTATACAAATACACAAATTAAAAAGTTTAAAACTCGAAACTAATATAATATATCATTTTACATTTAAAATTAAAATAATATATAAATATAAAATGAGTAACACAAAATAAAAAATTAAAAAGAGATTAATGTTGTTTCATGTAAGACCTCTTGAATGGGGTGGAAATATGCACAATGCCCACAACAAACAAGACAAAAAAAAAAAAAAAAAGTTTGCTTAAAAAAATGACCATTTAAATACTGTTTATGAAGAAATTACTAATTTAACTCTTTTTTTTTTAAAAAAAAAAACATTTTTAAAATTTTAGAGTCAAGGGACAAAAATAGTTATCAAATTGAAACTTGGAACAGGAATAACATCAAATGGGTTATAAAAAGTAGCGTTTTGTTTAGGTTGTTTTAGTATCAGTTTTAAAGGGTGGGGAGTAGAGAATAAATTGCATTTTATTTCGAATTTATTAAAATAAAATGAATAATAATATTTAATTGTAAGGGAAATTACTATAAACAGAAAAAATATCAAACTATTTATAAATATAGAAAATTTTTACTGTCTATCAGTGATAGATCACGTTAGAATTCTATCGTTTTTTATTGCTCAAGCAAATAAATTTTATTGCTTGAGTGATAGAAAGCGATATAATTCTATCGCGGTCTATCATTGATAGACTGTAAAAAAATTCTATATTTATAAATAATTTAGCTCATTTTTTGCTATATTTAAAAACAACCCTAATTTTAAATTAACTATGATAAGCTGGAAAAAAAAGTAGTAGTACAGCTAATACATGCAAGTCTATGGTTTTTAATGAAAAAGAACTCACATGCAGTATTTTCTTTTTTTTTTTTAAGCTTTTCTAATACTTGTTGTACGAGATCGCGATTTTTCATATATAAATGTCATAATGGCAGTGGCCAAATAAGGCTTAGTCGATCTTATTACTAGAGAATCAACTTGAACAATTATAATTTGACCCGATTATAGTTAATTTAAAATTAAATATTGTTAATTTTATTTTAATAAAATTCAAAATAAAATGCAATTTATGTTTCTTAATTTCTTCAATATTGTTATATTTTTTTAATTTTATTATCTTGGCTTAAAAATCAAAATTTATATTTTTCTTAAAATATTAGTATGGGTAAATCATCTCAAATATATTTTTCTTATCCTAAAATTATAAAATGATGTATATTTTTAGGAAAATTTTCACATAAAAAAATGCCAAACTATTTATAGAAAATAACAAAAAAATATTGATAGACATTAATAAACTTCTATCATTTCTATCATTAATAGACCTTGATAGATTTCTATCCGCGTCTATCACAACTATCTAAAAATTTTGCTTTGTGTAAATAGTTTTCCTTATTTTTCTATTTTTAAAATTTTTTCATATTTTTATCCTATTGTTAATTTAATTAAATATAGATAAATGAAGCTAACATGAATATAATCCAACCGGTATAAATTCGTATTATCGATCTCGAAGTTTAAGGTTCAATCTTCTCATCCGAGGAATATATATATATATAGTGAGACCCACCATAATTTTGAGACAAAAATGGTGGGTTCCATCAAGGGTTTAGAAGATGTGTGAGAAATTGATGGTTTGATGTGTTTGTTAAACAGCTAGAACCACAATTGGTGGAATCTGA

mRNA sequence

ATGATAATTCGTACACGTCAGGTCGTTGATACGCGAGAGGAGAGCGGCTTGAGTGGAGTGAAAGCAGGGAAGCTGGTAGCAGCGACGATCGTCGGAGGAGGAGCGGTGAGAAGCATGGTGGAGGTGGCCTATGATGCAACAAAAGGGACAGCGGAGAATGTGAAGGACATAGTTATTGCAGAGGCGAATGAAAATGTGGTGGACACTACTGAGTACAGAAGCATGGAGGATAAGGCTAGAACCACAATTGGTGGAATCTGA

Coding sequence (CDS)

ATGATAATTCGTACACGTCAGGTCGTTGATACGCGAGAGGAGAGCGGCTTGAGTGGAGTGAAAGCAGGGAAGCTGGTAGCAGCGACGATCGTCGGAGGAGGAGCGGTGAGAAGCATGGTGGAGGTGGCCTATGATGCAACAAAAGGGACAGCGGAGAATGTGAAGGACATAGTTATTGCAGAGGCGAATGAAAATGTGGTGGACACTACTGAGTACAGAAGCATGGAGGATAAGGCTAGAACCACAATTGGTGGAATCTGA

Protein sequence

MIIRTRQVVDTREESGLSGVKAGKLVAATIVGGGAVRSMVEVAYDATKGTAENVKDIVIAEANENVVDTTEYRSMEDKARTTIGGI
Homology
[Close]
BLAST of Lsi04G020630 vs. ExPASy TrEMBL
Match: A0A0A0L055 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G631600 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 4.1e-14
Identity = 50/69 (72.46%), Postives = 56/69 (81.16%), Query Frame = 0 

Query: 9   VDTREESGLSGVKAGKLVAATIVGGGAVRSMVEVAYDATKGTAENVKDIVIAEANENVVD 68
           VDT EE  ++G KA +L+ A +V  G VRS VEVAYDATKGTAE VKD VIAEANENVVD
Sbjct: 46  VDTSEERDVTGAKAEELI-AEMVKDGKVRSTVEVAYDATKGTAEKVKDTVIAEANENVVD 105

Query: 69  TTEYRSMED 78
           TTEYRSME+
Sbjct: 106 TTEYRSMEN 113

[Close]
BLAST of Lsi04G020630 vs. ExPASy TrEMBL
Match: A0A5D3DWB9 (Putative chilling-induced protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384G001770 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 3.0e-09
Identity = 38/48 (79.17%), Postives = 41/48 (85.42%), Query Frame = 0 

Query: 30 IVGGGAVRSMVEVAYDATKGTAENVKDIVIAEANENVVDTTEYRSMED 78
          +V  GAV S VEVAYDATKGT E VKD VIAEANENV+DTTEYRSME+
Sbjct: 1  MVEDGAVGSTVEVAYDATKGTTEKVKDTVIAEANENVMDTTEYRSMEN 48

[Close]
BLAST of Lsi04G020630 vs. NCBI nr
Match: XP_004146059.1 (uncharacterized protein LOC101215612 [Cucumis sativus] >KGN55118.1 hypothetical protein Csa_012887 [Cucumis sativus])

HSP 1 Score: 87.0 bits (214), Expect = 8.4e-14
Identity = 50/69 (72.46%), Postives = 56/69 (81.16%), Query Frame = 0 

Query: 9   VDTREESGLSGVKAGKLVAATIVGGGAVRSMVEVAYDATKGTAENVKDIVIAEANENVVD 68
           VDT EE  ++G KA +L+ A +V  G VRS VEVAYDATKGTAE VKD VIAEANENVVD
Sbjct: 46  VDTSEERDVTGAKAEELI-AEMVKDGKVRSTVEVAYDATKGTAEKVKDTVIAEANENVVD 105

Query: 69  TTEYRSMED 78
           TTEYRSME+
Sbjct: 106 TTEYRSMEN 113

[Close]
BLAST of Lsi04G020630 vs. NCBI nr
Match: KAA0066826.1 (putative chilling-induced protein [Cucumis melo var. makuwa] >TYK27973.1 putative chilling-induced protein [Cucumis melo var. makuwa])

HSP 1 Score: 70.9 bits (172), Expect = 6.2e-09
Identity = 38/48 (79.17%), Postives = 41/48 (85.42%), Query Frame = 0 

Query: 30 IVGGGAVRSMVEVAYDATKGTAENVKDIVIAEANENVVDTTEYRSMED 78
          +V  GAV S VEVAYDATKGT E VKD VIAEANENV+DTTEYRSME+
Sbjct: 1  MVEDGAVGSTVEVAYDATKGTTEKVKDTVIAEANENVMDTTEYRSMEN 48

[Close]
BLAST of Lsi04G020630 vs. NCBI nr
Match: XP_038899913.1 (uncharacterized protein LOC120087104 [Benincasa hispida])

HSP 1 Score: 69.3 bits (168), Expect = 1.8e-08
Identity = 41/66 (62.12%), Postives = 49/66 (74.24%), Query Frame = 0 

Query: 13  EESGLSGVKA-GKLVAATIVGGGAVRSMVEVAYDATKGTAENVKDIVIAEANENVVDTTE 72
           EES +   +A  + + A + G GA+ S+VEVAYD+TKGTAE VKD  IAEANENVVDT E
Sbjct: 40  EESDMDVDRAKAEQLRAGMAGEGAMTSIVEVAYDSTKGTAEKVKDTTIAEANENVVDTIE 99

Query: 73  YRSMED 78
           YRSM D
Sbjct: 100 YRSMGD 105

[Close]
BLAST of Lsi04G020630 vs. NCBI nr
Match: KAG6607884.1 (hypothetical protein SDJN03_01226, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 57.8 bits (138), Expect = 5.5e-05
Identity = 30/45 (66.67%), Postives = 34/45 (75.56%), Query Frame = 0 

Query: 33  GGAVRSMVEVAYDATKGTAENVKDIVIAEANENVVDTTEYRSMED 78
           GG   S  E AYDA  G AE VK+ VIAEANENV+DT+EYRSME+
Sbjct: 57  GGGAESREERAYDAATGKAEKVKETVIAEANENVMDTSEYRSMEE 101

The following BLAST results are available for this feature:
BLAST of Lsi04G020630 vs.
Match NameE-valueIdentityDescription
BLAST of Lsi04G020630 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L0554.1e-1472.46Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G631600 PE=4 SV=1[more]
A0A5D3DWB93.0e-0979.17Putative chilling-induced protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... [more]
BLAST of Lsi04G020630 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004146059.18.4e-1472.46uncharacterized protein LOC101215612 [Cucumis sativus] >KGN55118.1 hypothetical ... [more]
KAA0066826.16.2e-0979.17putative chilling-induced protein [Cucumis melo var. makuwa] >TYK27973.1 putativ... [more]
XP_038899913.11.8e-0862.12uncharacterized protein LOC120087104 [Benincasa hispida][more]
KAG6607884.15.5e-0566.67hypothetical protein SDJN03_01226, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of Lsi04G020630 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi04G020630.1Lsi04G020630.1mRNA