Lsi04G020480 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi04G020480
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description30S ribosomal protein S20, chloroplastic-like
Locationchr04: 27590097 .. 27594274 (+)
RNA-Seq ExpressionLsi04G020480
SyntenyLsi04G020480
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CAAAACTCGAATCCAAACAGCCAAAAACAACCGAGGATAAACCGATACTGCAAAACTCTGCTTCCAGTGGATAAAGCGCCAACGAAGGAGCAAAAGAGCCAAACCATTCTTCTTCTTCAACCTCTGGAGCTTTTCTTTTCAAGAATCGCCCACTCAGAAATGGCGGCAACTGTAATTAGTTGCTTCGCTCTTCCTTCTAAGTTCAGAAGTCTTTCCCTTAATGCTTCTTCCTCCTGTATTCCCGCTTCCCCATCTTCTTCCACCCTCAGAACTCTCAGTTTTTCCTCCAACATTTCAGTTTCCGCCTTCTCCAATGGTGAGTTCTTATGGGTTTCTTTCCCCCCCTTTTATATTATTTGTGTTGTAGAAGAACTGCGAAATTGTTTGAGGAAGTATCGAATTGCTGGACTTACTTTTGTCCATTTTCGTACAGGGTGCCTGTCGATGAGTAAAGCTCAAAGGCCACATCGTTACTCTGTGGTCTGCGAGGCAGCTCCTAAGACCAAGGCTGATTCTGCGGCAAAGAGGGCTCGGCAGGCTGAGAAAAGACGCATTTACAATAAAGCCCGGAAGTCTGAAATTAAAACCAGGATCAAGAAGGTACCTAATTTTGGCTGGTTTGTATGCATTGGAATATATTGAAATCTCTAAGAATGATGTCCAGAATTCGTTTTATGTCAGAGTAATATATATATATATATATTTGGATAAGAAACGGTTTCGTATGAAATTACAAAAGAAAGGGGAAAAGACCCAAAGGAGAGATTACAAATGACCTTTACAGTTTGAAAGGAGACTAGTGTAGCTATAGTGATGAAATAAGAGAGAGCATGTACACCAAGTCACAACCATGTTAACTATAGTATCAAAAAAATTATAATAAGAGAGTTCTTTGTCTTGGAAGATTCTTCTATTCCTTTCTTGCCAAATGTTCCAGCAGAACGCTATAATGAAATTTTCCTATAAAAGCTTTGTCTCCTTTTGGAAAGGGTGCCCTCCTAGGACAAGGGGTAGGAGAGATTCAGGATCTTCCGGGAGAGCTGTGTACCAATTAAAAGTTGAAAGGAGATAGTTCCAAAAGGTGTTAGCAAAGGTACATGATACCAAAAGGTGACTCTGTGATTCAGATTGTTGTTTACAAATAGAGCACCAATGTGGAGACAAAACCATGTAAGGCATTCTTCTTTGGAGCTTGTCATGGGTATTGATGGCTTTCTTAGATAGATCCCAAAGATAAAACTTCATCTTCTTTGGATAATGACCCTTCCATTCCAGATGATACAGAGACAAGGTTCCATCAATGGAGGGGGAAATCATACAAAAGGGAGCTATTTGAAAAAATGCCAGTGGGTCCTAGCTTCCAAAGACCCCTGTCAGGTCTGTTATGAAAGGAAACAGCAGCTAGAATGTGTAAAGGAGTTCCATATTCTCCAGTTTCAGCCTCTCTCTGACTCCTCCTCAATCTTAGATTCCAATACCCTAGGTTTGTGTCCCAAAAGTCTTTTACAGCCCCAATCTGGCTGCGAGAAAGGGAAACGGCAAAAATAAGGGAGAATTGTGATGTAAGGGGTTCGTTCCCCAGCCAGATGTCTTGCCAAAAAGACATGTTCACTCCATCCCCAAGAATGATAGAAATTCTATCATGAAACAGAGAGCAATGCCTCATGATGGATTTCCAAGGTCCCTTTTCTGTCCCAAGGGTGGTTTCCTATAAACACCATTTTCACCTATTAGTTTCTTTATTTTGTCCACATTTGAGGAGTGTTTTCAAAATCCAAGCTAAATTTTGAAAACTAAAAAAATATAGTTTTTAAAGTTTTTGTTTTTAAAATTTGGTTAAGAATTCCAATCTTTACTCAAGAAAAATGGTAAAGAAATTTTGAGGAAACAATCACAATTTTCAAAAACAAAATGGTTATCAAACGAAACAAAAAACAAAATGGTTATCGAGTAGAGACTGTATTTCTGGGAGATTTTCACTTTAGACTAGTATGTGCCTAATTTGTAAGTACCTTTAGATAAACTGAGCTATATCAAGACTCAAGGGGCTAATTACTCCTTTTTGTTCCTTATGATATGAGTTTTACCAGTCGTTACATTAGCTGTTGAAGATAAATGCCTGAAATGATTATCTTCGTCTGACTGTTCCGAATGGGGACCGGATGAAATCCGTAAAATTAAGAGATGGAAGGTAGATGCTTACAATTTTGTCTTCAGTACCAGTGGACAATTGGTTCTATATATATACACACACACACATGCATAATATGATTTTGTTTGATAAGGTCAATGGTACCGTTGTTTCGGATGCTTGATGTGAAAATCTGATCAGTAGAAATTCTTATTTTCCAGAAATGATTATAAACACTGTTCACCTCTGAAAAAAAGACATGAAGATTACAATGGCTACTACTGGAAAATTTGAGTTTTATTTCAGACAGCTTGTAATCTAGACTTAAATGATTGGATCTTCAGTATTATTTGTCATTAAAGTAACCAAACTGATATAGTTTAAACTGTCAAGCATCCCAACTTGATGGACAATTGTAAAAGGACTAGAAAGAAAAGTCTGGTAAATGGTAAAGTTGATCGAATATTCTCATCCAGTAGAAGATTGTCAGCATAATTCTTTCTGATTGGCTAGAGCTAGCTTCTCTAGGCGGTTTTCATGTTGGCTATGACTGAATTTTAAATAATTTGTTTCAAAAAAAATTTCAGCCTCTCTTAAGTCTTGAACTTACTCAAGACCATTAAGGTGTTTGAATGAGCCTTTGGCTTACCTGTGGATTTATTTGAATCTTTGGTTGCGAGTACCAACTGTTCGTTGGATGAGTTATGCAATATGATTAACATCTCTTCCTGTTCTAATAATAAGTGGCCTTTGAGTTATCTTGTGGATCAGAGGTAATCCTAAGCTGTAAAATCTTGTTTGACCAATGATTAAGAGGAGTTGCCTTTAGGTAAGTGTCTCATTCTGTTTGCAAAGTTTTCTTTGGTCATGCTTCCAAGAAAGCATTAGCGTTTTGGCTTAATGCTTCAGAGTTTTTTTCCTGTGAAGTTTGGTCAACAATGAATGTGTTTTTAAGTTATGAAGGCAGCATGAAAAATATTCTACTTGAAATTTCTCCAAATTATTATATTTCTTTATCATTTTTCAACTTCTTGGTGTCAAGAGAGGCAGTAGGAAGAGGGGATGGAGGGTGTTTCCCATTTATAATTAAGACTTCATCCTTTCTTGTTTGAGCAGAAGAAAACATTGGCTTTCCTCATTCTACCTCCCAACTGGTAAAACTCTCCCCTTTTTTTCTTTTTAATAAAAAATTGAATCTCTAAAGAGATGCTGCTTTCTGATGCAATGGGTTGGTTTCTTTATCTGCTAAAGGACAGAACTAAAGCATAATCTTAATATGGTTGCACAACACATCCTCTACATCCTTGGTTTTGCACTTTGTGAAGAAAAAGAGAAGATTTTCTGTTTCTTTCCAGAACTAGTCAGCATAAGAATGACCTCTCACTCTTACAATTCCAGGTTTTGGAAGCTTTAGATGGTCTCAAGAAGAAACCTGAAGCACAATCAGAGGAAGTCCTTCCAATTGAGAAGCTCATTGCAGAAGCATACTCGGTGATCGACAAAGCCGTGAGAGTGGGAACGTTGCACCGAAACACTGCAGCACGGCGAAAATCTCGGCTCGCCAGAAGAAAGAAAGCTGTGGAAATCCACCATGGCTGGTACACCCCAGATTCACCAGCAGCTGCCTGATGCTCTACCCCCTTGTCTTTATTGTTAATGGGGTTGAGGAATGAATGGAAAGATCATTCTATTCTTTTTTTGACGTAGATAAATGACAACTTTTTTTTTCATCTATTTCTTTAACTTTTGTATTTAGTTCGAACCTTCCTTCCTTCTATGTCTACAGTTGAAGTTTCACTTCTATTTCATCTCCCTTGGTTGATGGGTCCAAAACACTACACCTAAAAAATTACAAATCATTAGCTTAGAATTTTATATTTTTAGGGTAAATTGAACTCATTCATCTCCTTGAAGGTCTCCAGAAGCTTCAGGAATCCTCTTCTTGAAACAAGAAGTGCATAAATGATGCAGTTGCATATCACAAAATCTAGTTTCAAATGTCTCTTACATTCTGGCTCTAAACAAATTTTGAGATACTGGAAGTTTA

mRNA sequence

CAAAACTCGAATCCAAACAGCCAAAAACAACCGAGGATAAACCGATACTGCAAAACTCTGCTTCCAGTGGATAAAGCGCCAACGAAGGAGCAAAAGAGCCAAACCATTCTTCTTCTTCAACCTCTGGAGCTTTTCTTTTCAAGAATCGCCCACTCAGAAATGGCGGCAACTGTAATTAGTTGCTTCGCTCTTCCTTCTAAGTTCAGAAGTCTTTCCCTTAATGCTTCTTCCTCCTGTATTCCCGCTTCCCCATCTTCTTCCACCCTCAGAACTCTCAGTTTTTCCTCCAACATTTCAGTTTCCGCCTTCTCCAATGGGTGCCTGTCGATGAGTAAAGCTCAAAGGCCACATCGTTACTCTGTGGTCTGCGAGGCAGCTCCTAAGACCAAGGCTGATTCTGCGGCAAAGAGGGCTCGGCAGGCTGAGAAAAGACGCATTTACAATAAAGCCCGGAAGTCTGAAATTAAAACCAGGATCAAGAAGGTTTTGGAAGCTTTAGATGGTCTCAAGAAGAAACCTGAAGCACAATCAGAGGAAGTCCTTCCAATTGAGAAGCTCATTGCAGAAGCATACTCGGTGATCGACAAAGCCGTGAGAGTGGGAACGTTGCACCGAAACACTGCAGCACGGCGAAAATCTCGGCTCGCCAGAAGAAAGAAAGCTGTGGAAATCCACCATGGCTGGTACACCCCAGATTCACCAGCAGCTGCCTGATGCTCTACCCCCTTGTCTTTATTGTTAATGGGGTTGAGGAATGAATGGAAAGATCATTCTATTCTTTTTTTGACGTAGATAAATGACAACTTTTTTTTTCATCTATTTCTTTAACTTTTGTATTTAGTTCGAACCTTCCTTCCTTCTATGTCTACAGTTGAAGTTTCACTTCTATTTCATCTCCCTTGGTTGATGGGTCCAAAACACTACACCTAAAAAATTACAAATCATTAGCTTAGAATTTTATATTTTTAGGGTAAATTGAACTCATTCATCTCCTTGAAGGTCTCCAGAAGCTTCAGGAATCCTCTTCTTGAAACAAGAAGTGCATAAATGATGCAGTTGCATATCACAAAATCTAGTTTCAAATGTCTCTTACATTCTGGCTCTAAACAAATTTTGAGATACTGGAAGTTTA

Coding sequence (CDS)

ATGGCGGCAACTGTAATTAGTTGCTTCGCTCTTCCTTCTAAGTTCAGAAGTCTTTCCCTTAATGCTTCTTCCTCCTGTATTCCCGCTTCCCCATCTTCTTCCACCCTCAGAACTCTCAGTTTTTCCTCCAACATTTCAGTTTCCGCCTTCTCCAATGGGTGCCTGTCGATGAGTAAAGCTCAAAGGCCACATCGTTACTCTGTGGTCTGCGAGGCAGCTCCTAAGACCAAGGCTGATTCTGCGGCAAAGAGGGCTCGGCAGGCTGAGAAAAGACGCATTTACAATAAAGCCCGGAAGTCTGAAATTAAAACCAGGATCAAGAAGGTTTTGGAAGCTTTAGATGGTCTCAAGAAGAAACCTGAAGCACAATCAGAGGAAGTCCTTCCAATTGAGAAGCTCATTGCAGAAGCATACTCGGTGATCGACAAAGCCGTGAGAGTGGGAACGTTGCACCGAAACACTGCAGCACGGCGAAAATCTCGGCTCGCCAGAAGAAAGAAAGCTGTGGAAATCCACCATGGCTGGTACACCCCAGATTCACCAGCAGCTGCCTGA

Protein sequence

MAATVISCFALPSKFRSLSLNASSSCIPASPSSSTLRTLSFSSNISVSAFSNGCLSMSKAQRPHRYSVVCEAAPKTKADSAAKRARQAEKRRIYNKARKSEIKTRIKKVLEALDGLKKKPEAQSEEVLPIEKLIAEAYSVIDKAVRVGTLHRNTAARRKSRLARRKKAVEIHHGWYTPDSPAAA
Homology
[Close]
BLAST of Lsi04G020480 vs. ExPASy Swiss-Prot
Match: Q9ASV6 (30S ribosomal protein S20, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPS20 PE=2 SV=1)

HSP 1 Score: 184.5 bits (467), Expect = 1.1e-45
Identity = 116/187 (62.03%), Postives = 142/187 (75.94%), Query Frame = 0 

Query: 7   SCFALPSKFRSLSLNASSSCIPASP------SSSTL-RTLSFSSNIS-VSAFSNGCLSMS 66
           SC  L S+F+ LSL   S   P+S       +S+TL  +LSFS ++S   AFS G L + 
Sbjct: 10  SCATLESQFKVLSLKGISCSSPSSSFSNRRGASATLSSSLSFSQSVSQCVAFSTGNLWV- 69

Query: 67  KAQRPHRYSVVCE-AAPKTKADSAAKRARQAEKRRIYNKARKSEIKTRIKKVLEALDGLK 126
             Q+P R  +VCE AAP  KADSAAKRARQAEKRR+YNK++KSE +TR+KKVLEAL+GLK
Sbjct: 70  --QKPMRQLIVCEAAAPTKKADSAAKRARQAEKRRVYNKSKKSEARTRMKKVLEALEGLK 129

Query: 127 KKPEAQSEEVLPIEKLIAEAYSVIDKAVRVGTLHRNTAARRKSRLARRKKAVEIHHGWYT 185
           KK +AQ++E++ +EKLI EAYS IDKAV+V  LH+NT ARRKSRLARRKKAVEIHHGWY 
Sbjct: 130 KKTDAQADEIVTVEKLIGEAYSAIDKAVKVKALHKNTGARRKSRLARRKKAVEIHHGWYV 189

[Close]
BLAST of Lsi04G020480 vs. ExPASy Swiss-Prot
Match: P82130 (30S ribosomal protein S20, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPS20 PE=1 SV=2)

HSP 1 Score: 181.0 bits (458), Expect = 1.2e-44
Identity = 110/178 (61.80%), Postives = 130/178 (73.03%), Query Frame = 0 

Query: 1   MAATVISCFALPSKFRSLSLNASSSCIPASPSSSTLRTLSFSSNISVSAFSNGCLSMSKA 60
           MA     C ++ SK  +LS   SS+  P    +S+L+ L+FS+N+S   FS GC S+   
Sbjct: 6   MACVSSQCLSISSKLHNLSF--SSTQFP----NSSLKPLTFSANLSQPLFSQGCSSLGSF 65

Query: 61  QRPHRYSVVCEAAPKTKADSAAKRARQAEKRRIYNKARKSEIKTRIKKVLEALDGLKKKP 120
           QR   +SVVCE A   KADSAAKR RQAE RR+ NKARKSE+KTR++KV EALD LKKK 
Sbjct: 66  QR-RGFSVVCEVATLKKADSAAKRTRQAETRRLRNKARKSEVKTRMRKVFEALDALKKKS 125

Query: 121 EAQSEEVLPIEKLIAEAYSVIDKAVRVGTLHRNTAARRKSRLARRKKAVEIHHGWYTP 179
            A +EE++PI+ LIAEAYS IDKAV  GTLHRNTAARRKSRLAR KK VEIHHGWYTP
Sbjct: 126 GASTEELVPIDNLIAEAYSAIDKAVVKGTLHRNTAARRKSRLARNKKVVEIHHGWYTP 176

[Close]
BLAST of Lsi04G020480 vs. ExPASy Swiss-Prot
Match: A7HJB0 (30S ribosomal protein S20 OS=Fervidobacterium nodosum (strain ATCC 35602 / DSM 5306 / Rt17-B1) OX=381764 GN=rpsT PE=3 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 4.8e-09
Identity = 42/89 (47.19%), Postives = 56/89 (62.92%), Query Frame = 0 

Query: 80  SAAKRARQAEKRRIYNKARKSEIKTRIKKVLEALDGLKKKPEAQSEEVLPIEKLIAEAYS 139
           SA KR R +EKRR+ NKA K+ +K +IK VL A+        AQ +    I +L  +A S
Sbjct: 6   SAEKRVRVSEKRRVLNKAYKTSMKNKIKAVLAAI--------AQKKSAEEIMELFRKAQS 65

Query: 140 VIDKAVRVGTLHRNTAARRKSRLARRKKA 169
            IDKA + G +H+N A+RRKSRLA + KA
Sbjct: 66  AIDKAAKSGAIHKNQASRRKSRLAVKVKA 86

[Close]
BLAST of Lsi04G020480 vs. ExPASy Swiss-Prot
Match: Q8YWL3 (30S ribosomal protein S20 OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576) OX=103690 GN=rpsT PE=3 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 4.8e-09
Identity = 41/91 (45.05%), Postives = 56/91 (61.54%), Query Frame = 0 

Query: 80  SAAKRARQAEKRRIYNKARKSEIKTRIKKVLEALDGLKKKPEAQSEEVLPIEKLIAEAYS 139
           SA KRA+ AE+ R+ NK  KS +KT +K  L A+      P  +S++    +  +A AYS
Sbjct: 6   SALKRAQIAERNRVRNKTYKSSVKTLMKNYLSAVQAYAANPTPESKQ--EAQTRLAAAYS 65

Query: 140 VIDKAVRVGTLHRNTAARRKSRLARRKKAVE 171
            IDKAV+ G LH N  AR+KSRLA + K +E
Sbjct: 66  RIDKAVKRGILHPNNGARKKSRLASKLKPIE 94

[Close]
BLAST of Lsi04G020480 vs. ExPASy Swiss-Prot
Match: Q3M5D2 (30S ribosomal protein S20 OS=Trichormus variabilis (strain ATCC 29413 / PCC 7937) OX=240292 GN=rpsT PE=3 SV=2)

HSP 1 Score: 62.8 bits (151), Expect = 4.8e-09
Identity = 41/91 (45.05%), Postives = 56/91 (61.54%), Query Frame = 0 

Query: 80  SAAKRARQAEKRRIYNKARKSEIKTRIKKVLEALDGLKKKPEAQSEEVLPIEKLIAEAYS 139
           SA KRA+ AE+ R+ NK  KS +KT +K  L A+      P  +S++    +  +A AYS
Sbjct: 7   SALKRAQIAERNRVRNKTYKSSVKTLMKNYLSAVQAYAANPTPESKQ--EAQTRLAAAYS 66

Query: 140 VIDKAVRVGTLHRNTAARRKSRLARRKKAVE 171
            IDKAV+ G LH N  AR+KSRLA + K +E
Sbjct: 67  RIDKAVKRGILHPNNGARKKSRLASKLKPIE 95

[Close]
BLAST of Lsi04G020480 vs. ExPASy TrEMBL
Match: A0A6J1IG57 (30S ribosomal protein S20, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111476939 PE=3 SV=1)

HSP 1 Score: 297.0 bits (759), Expect = 5.5e-77
Identity = 167/185 (90.27%), Postives = 178/185 (96.22%), Query Frame = 0 

Query: 1   MAAT-VISCFALPSKFRSLSLNASSSCIPASPSSSTLRTLSFSSNISVSAFSNGCLSMSK 60
           MAAT +ISCFALPSKFR+LSLNASSS +P SPSSSTLR+LSFSSN+SVSAFSNGCLS+SK
Sbjct: 1   MAATAIISCFALPSKFRNLSLNASSSSMPLSPSSSTLRSLSFSSNVSVSAFSNGCLSISK 60

Query: 61  AQRPHRYSVVCEAAPKTKADSAAKRARQAEKRRIYNKARKSEIKTRIKKVLEALDGLKKK 120
           AQRP RYSVVCEAAPK KADSAAKRARQAEKRR+YNKARKSEIKTR+KKV+EALD LKKK
Sbjct: 61  AQRPFRYSVVCEAAPK-KADSAAKRARQAEKRRVYNKARKSEIKTRMKKVMEALDDLKKK 120

Query: 121 PEAQSEEVLPIEKLIAEAYSVIDKAVRVGTLHRNTAARRKSRLARRKKAVEIHHGWYTPD 180
           PEAQSEEVLPIEKLIAEA+SVIDKAV+VGTLHRNTAARRKSRLARRKKAVEIHHGWYTP 
Sbjct: 121 PEAQSEEVLPIEKLIAEAFSVIDKAVKVGTLHRNTAARRKSRLARRKKAVEIHHGWYTPA 180

Query: 181 SPAAA 185
           SPAAA
Sbjct: 181 SPAAA 184

[Close]
BLAST of Lsi04G020480 vs. ExPASy TrEMBL
Match: A0A5A7VMD2 (30S ribosomal protein S20 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384G001620 PE=3 SV=1)

HSP 1 Score: 295.8 bits (756), Expect = 1.2e-76
Identity = 163/184 (88.59%), Postives = 172/184 (93.48%), Query Frame = 0 

Query: 1   MAATVISCFALPSKFRSLSLNASSSCIPASPSSSTLRTLSFSSNISVSAFSNGCLSMSKA 60
           MAA  ++CFAL SKF +LSLN  SS IPA+PSSSTLR+LSFSSNIS+SAFSNGCLSM K 
Sbjct: 1   MAAAAVTCFALSSKFGNLSLNGFSSSIPAAPSSSTLRSLSFSSNISLSAFSNGCLSMRKT 60

Query: 61  QRPHRYSVVCEAAPKTKADSAAKRARQAEKRRIYNKARKSEIKTRIKKVLEALDGLKKKP 120
           +R HRYSVVCEAAPKTKADSAAKRARQAEKRRIYNKARKSEIKTR+KKVLEALDGLKKK 
Sbjct: 61  ERMHRYSVVCEAAPKTKADSAAKRARQAEKRRIYNKARKSEIKTRMKKVLEALDGLKKKA 120

Query: 121 EAQSEEVLPIEKLIAEAYSVIDKAVRVGTLHRNTAARRKSRLARRKKAVEIHHGWYTPDS 180
           EAQSEEVLPIEKL+AEAYSVIDKAVR GTLHRNTAARRKSRLARRKKAVEIHHGWYTPDS
Sbjct: 121 EAQSEEVLPIEKLMAEAYSVIDKAVRAGTLHRNTAARRKSRLARRKKAVEIHHGWYTPDS 180

Query: 181 PAAA 185
           PAAA
Sbjct: 181 PAAA 184

[Close]
BLAST of Lsi04G020480 vs. ExPASy TrEMBL
Match: A0A1S3CJU9 (30S ribosomal protein S20, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103501779 PE=3 SV=1)

HSP 1 Score: 295.8 bits (756), Expect = 1.2e-76
Identity = 163/184 (88.59%), Postives = 172/184 (93.48%), Query Frame = 0 

Query: 1   MAATVISCFALPSKFRSLSLNASSSCIPASPSSSTLRTLSFSSNISVSAFSNGCLSMSKA 60
           MAA  ++CFAL SKF +LSLN  SS IPA+PSSSTLR+LSFSSNIS+SAFSNGCLSM K 
Sbjct: 1   MAAAAVTCFALSSKFGNLSLNGFSSSIPAAPSSSTLRSLSFSSNISLSAFSNGCLSMRKT 60

Query: 61  QRPHRYSVVCEAAPKTKADSAAKRARQAEKRRIYNKARKSEIKTRIKKVLEALDGLKKKP 120
           +R HRYSVVCEAAPKTKADSAAKRARQAEKRRIYNKARKSEIKTR+KKVLEALDGLKKK 
Sbjct: 61  ERMHRYSVVCEAAPKTKADSAAKRARQAEKRRIYNKARKSEIKTRMKKVLEALDGLKKKA 120

Query: 121 EAQSEEVLPIEKLIAEAYSVIDKAVRVGTLHRNTAARRKSRLARRKKAVEIHHGWYTPDS 180
           EAQSEEVLPIEKL+AEAYSVIDKAVR GTLHRNTAARRKSRLARRKKAVEIHHGWYTPDS
Sbjct: 121 EAQSEEVLPIEKLMAEAYSVIDKAVRAGTLHRNTAARRKSRLARRKKAVEIHHGWYTPDS 180

Query: 181 PAAA 185
           PAAA
Sbjct: 181 PAAA 184

[Close]
BLAST of Lsi04G020480 vs. ExPASy TrEMBL
Match: A0A6J1F6F1 (30S ribosomal protein S20, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111442556 PE=3 SV=1)

HSP 1 Score: 293.1 bits (749), Expect = 8.0e-76
Identity = 166/185 (89.73%), Postives = 177/185 (95.68%), Query Frame = 0 

Query: 1   MAAT-VISCFALPSKFRSLSLNASSSCIPASPSSSTLRTLSFSSNISVSAFSNGCLSMSK 60
           MAAT +ISCFALPSKFR+LSLNASSS +  SPSSSTLR+LSFSSN+SVSAFSNGCLS+SK
Sbjct: 1   MAATAIISCFALPSKFRNLSLNASSSSMLLSPSSSTLRSLSFSSNVSVSAFSNGCLSISK 60

Query: 61  AQRPHRYSVVCEAAPKTKADSAAKRARQAEKRRIYNKARKSEIKTRIKKVLEALDGLKKK 120
           AQRP RYSVVCEAAPK KADSAAKRARQAEKRR+YNKARKSEIKTR+KKV+EALD LKKK
Sbjct: 61  AQRPFRYSVVCEAAPK-KADSAAKRARQAEKRRVYNKARKSEIKTRMKKVMEALDDLKKK 120

Query: 121 PEAQSEEVLPIEKLIAEAYSVIDKAVRVGTLHRNTAARRKSRLARRKKAVEIHHGWYTPD 180
           PEAQSEEVLPIEKLIAEA+SVIDKAV+VGTLHRNTAARRKSRLARRKKAVEIHHGWYTP 
Sbjct: 121 PEAQSEEVLPIEKLIAEAFSVIDKAVKVGTLHRNTAARRKSRLARRKKAVEIHHGWYTPA 180

Query: 181 SPAAA 185
           SPAAA
Sbjct: 181 SPAAA 184

[Close]
BLAST of Lsi04G020480 vs. ExPASy TrEMBL
Match: A0A0A0KZK9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G630000 PE=3 SV=1)

HSP 1 Score: 290.4 bits (742), Expect = 5.2e-75
Identity = 161/184 (87.50%), Postives = 170/184 (92.39%), Query Frame = 0 

Query: 1   MAATVISCFALPSKFRSLSLNASSSCIPASPSSSTLRTLSFSSNISVSAFSNGCLSMSKA 60
           MAA  I+CF+L SKF +LSLN  SS IPA+PSSSTLR+LSFSSNIS+SAFSNGCLSM K 
Sbjct: 1   MAAAAITCFSLSSKFGNLSLNGFSSSIPAAPSSSTLRSLSFSSNISLSAFSNGCLSMRKT 60

Query: 61  QRPHRYSVVCEAAPKTKADSAAKRARQAEKRRIYNKARKSEIKTRIKKVLEALDGLKKKP 120
           +R HRYSVVCEAAPK+K DSAAKRARQAEKRRIYNKARKSEIKTR+KKVLEALDGLKKK 
Sbjct: 61  ERLHRYSVVCEAAPKSKVDSAAKRARQAEKRRIYNKARKSEIKTRMKKVLEALDGLKKKA 120

Query: 121 EAQSEEVLPIEKLIAEAYSVIDKAVRVGTLHRNTAARRKSRLARRKKAVEIHHGWYTPDS 180
           EAQSEEVLPIE LIAEAYSVIDKAVR GTLHRNTAARRKSRLARRKKAVEIHHGWYTPDS
Sbjct: 121 EAQSEEVLPIETLIAEAYSVIDKAVRAGTLHRNTAARRKSRLARRKKAVEIHHGWYTPDS 180

Query: 181 PAAA 185
           PAAA
Sbjct: 181 PAAA 184

[Close]
BLAST of Lsi04G020480 vs. NCBI nr
Match: XP_038899721.1 (30S ribosomal protein S20, chloroplastic [Benincasa hispida])

HSP 1 Score: 316.2 bits (809), Expect = 1.8e-82
Identity = 173/184 (94.02%), Postives = 178/184 (96.74%), Query Frame = 0 

Query: 1   MAATVISCFALPSKFRSLSLNASSSCIPASPSSSTLRTLSFSSNISVSAFSNGCLSMSKA 60
           MAAT +SCF+LPSKFR+LSLNASSSCIPASPSS TLR+LSFSSN SVSAFSNGCL+MSKA
Sbjct: 1   MAATAVSCFSLPSKFRNLSLNASSSCIPASPSSLTLRSLSFSSNTSVSAFSNGCLTMSKA 60

Query: 61  QRPHRYSVVCEAAPKTKADSAAKRARQAEKRRIYNKARKSEIKTRIKKVLEALDGLKKKP 120
           QRP RYSVVCEAAPK KADSAAKR RQAEKRRIYNKARKSEIKTRIKKVLEALDGLKKKP
Sbjct: 61  QRPSRYSVVCEAAPKNKADSAAKRTRQAEKRRIYNKARKSEIKTRIKKVLEALDGLKKKP 120

Query: 121 EAQSEEVLPIEKLIAEAYSVIDKAVRVGTLHRNTAARRKSRLARRKKAVEIHHGWYTPDS 180
           EAQSEEVLPIEKLIAEAYSVIDKAVRVGTLHRNTAARRKSRLARRKKAVEIHHGWYTPDS
Sbjct: 121 EAQSEEVLPIEKLIAEAYSVIDKAVRVGTLHRNTAARRKSRLARRKKAVEIHHGWYTPDS 180

Query: 181 PAAA 185
           PAAA
Sbjct: 181 PAAA 184

[Close]
BLAST of Lsi04G020480 vs. NCBI nr
Match: XP_022976587.1 (30S ribosomal protein S20, chloroplastic-like [Cucurbita maxima] >KAG6591939.1 30S ribosomal protein S20, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7024812.1 30S ribosomal protein S20, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 297.0 bits (759), Expect = 1.1e-76
Identity = 167/185 (90.27%), Postives = 178/185 (96.22%), Query Frame = 0 

Query: 1   MAAT-VISCFALPSKFRSLSLNASSSCIPASPSSSTLRTLSFSSNISVSAFSNGCLSMSK 60
           MAAT +ISCFALPSKFR+LSLNASSS +P SPSSSTLR+LSFSSN+SVSAFSNGCLS+SK
Sbjct: 1   MAATAIISCFALPSKFRNLSLNASSSSMPLSPSSSTLRSLSFSSNVSVSAFSNGCLSISK 60

Query: 61  AQRPHRYSVVCEAAPKTKADSAAKRARQAEKRRIYNKARKSEIKTRIKKVLEALDGLKKK 120
           AQRP RYSVVCEAAPK KADSAAKRARQAEKRR+YNKARKSEIKTR+KKV+EALD LKKK
Sbjct: 61  AQRPFRYSVVCEAAPK-KADSAAKRARQAEKRRVYNKARKSEIKTRMKKVMEALDDLKKK 120

Query: 121 PEAQSEEVLPIEKLIAEAYSVIDKAVRVGTLHRNTAARRKSRLARRKKAVEIHHGWYTPD 180
           PEAQSEEVLPIEKLIAEA+SVIDKAV+VGTLHRNTAARRKSRLARRKKAVEIHHGWYTP 
Sbjct: 121 PEAQSEEVLPIEKLIAEAFSVIDKAVKVGTLHRNTAARRKSRLARRKKAVEIHHGWYTPA 180

Query: 181 SPAAA 185
           SPAAA
Sbjct: 181 SPAAA 184

[Close]
BLAST of Lsi04G020480 vs. NCBI nr
Match: XP_008463697.1 (PREDICTED: 30S ribosomal protein S20, chloroplastic [Cucumis melo] >KAA0066811.1 30S ribosomal protein S20 [Cucumis melo var. makuwa] >TYK27958.1 30S ribosomal protein S20 [Cucumis melo var. makuwa])

HSP 1 Score: 295.8 bits (756), Expect = 2.5e-76
Identity = 163/184 (88.59%), Postives = 172/184 (93.48%), Query Frame = 0 

Query: 1   MAATVISCFALPSKFRSLSLNASSSCIPASPSSSTLRTLSFSSNISVSAFSNGCLSMSKA 60
           MAA  ++CFAL SKF +LSLN  SS IPA+PSSSTLR+LSFSSNIS+SAFSNGCLSM K 
Sbjct: 1   MAAAAVTCFALSSKFGNLSLNGFSSSIPAAPSSSTLRSLSFSSNISLSAFSNGCLSMRKT 60

Query: 61  QRPHRYSVVCEAAPKTKADSAAKRARQAEKRRIYNKARKSEIKTRIKKVLEALDGLKKKP 120
           +R HRYSVVCEAAPKTKADSAAKRARQAEKRRIYNKARKSEIKTR+KKVLEALDGLKKK 
Sbjct: 61  ERMHRYSVVCEAAPKTKADSAAKRARQAEKRRIYNKARKSEIKTRMKKVLEALDGLKKKA 120

Query: 121 EAQSEEVLPIEKLIAEAYSVIDKAVRVGTLHRNTAARRKSRLARRKKAVEIHHGWYTPDS 180
           EAQSEEVLPIEKL+AEAYSVIDKAVR GTLHRNTAARRKSRLARRKKAVEIHHGWYTPDS
Sbjct: 121 EAQSEEVLPIEKLMAEAYSVIDKAVRAGTLHRNTAARRKSRLARRKKAVEIHHGWYTPDS 180

Query: 181 PAAA 185
           PAAA
Sbjct: 181 PAAA 184

[Close]
BLAST of Lsi04G020480 vs. NCBI nr
Match: XP_023534903.1 (30S ribosomal protein S20, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 294.3 bits (752), Expect = 7.4e-76
Identity = 166/185 (89.73%), Postives = 177/185 (95.68%), Query Frame = 0 

Query: 1   MAAT-VISCFALPSKFRSLSLNASSSCIPASPSSSTLRTLSFSSNISVSAFSNGCLSMSK 60
           MAAT VISCF+LPSKFR+LSLNASSS +P SPSSSTLR+LSFSSN+SVSAFSNGCLS+SK
Sbjct: 1   MAATAVISCFSLPSKFRNLSLNASSSSMPLSPSSSTLRSLSFSSNVSVSAFSNGCLSISK 60

Query: 61  AQRPHRYSVVCEAAPKTKADSAAKRARQAEKRRIYNKARKSEIKTRIKKVLEALDGLKKK 120
           AQRP RYSVVCEAAPK KADSAAKRARQAEKRR+YNKARKSEIKTR+KKV+EALD LKKK
Sbjct: 61  AQRPFRYSVVCEAAPK-KADSAAKRARQAEKRRVYNKARKSEIKTRMKKVMEALDDLKKK 120

Query: 121 PEAQSEEVLPIEKLIAEAYSVIDKAVRVGTLHRNTAARRKSRLARRKKAVEIHHGWYTPD 180
           PE QSEEVLPIEKLIAEA+SVIDKAV+VGTLHRNTAARRKSRLARRKKAVEIHHGWYTP 
Sbjct: 121 PEPQSEEVLPIEKLIAEAFSVIDKAVKVGTLHRNTAARRKSRLARRKKAVEIHHGWYTPA 180

Query: 181 SPAAA 185
           SPAAA
Sbjct: 181 SPAAA 184

[Close]
BLAST of Lsi04G020480 vs. NCBI nr
Match: XP_022935732.1 (30S ribosomal protein S20, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 293.1 bits (749), Expect = 1.7e-75
Identity = 166/185 (89.73%), Postives = 177/185 (95.68%), Query Frame = 0 

Query: 1   MAAT-VISCFALPSKFRSLSLNASSSCIPASPSSSTLRTLSFSSNISVSAFSNGCLSMSK 60
           MAAT +ISCFALPSKFR+LSLNASSS +  SPSSSTLR+LSFSSN+SVSAFSNGCLS+SK
Sbjct: 1   MAATAIISCFALPSKFRNLSLNASSSSMLLSPSSSTLRSLSFSSNVSVSAFSNGCLSISK 60

Query: 61  AQRPHRYSVVCEAAPKTKADSAAKRARQAEKRRIYNKARKSEIKTRIKKVLEALDGLKKK 120
           AQRP RYSVVCEAAPK KADSAAKRARQAEKRR+YNKARKSEIKTR+KKV+EALD LKKK
Sbjct: 61  AQRPFRYSVVCEAAPK-KADSAAKRARQAEKRRVYNKARKSEIKTRMKKVMEALDDLKKK 120

Query: 121 PEAQSEEVLPIEKLIAEAYSVIDKAVRVGTLHRNTAARRKSRLARRKKAVEIHHGWYTPD 180
           PEAQSEEVLPIEKLIAEA+SVIDKAV+VGTLHRNTAARRKSRLARRKKAVEIHHGWYTP 
Sbjct: 121 PEAQSEEVLPIEKLIAEAFSVIDKAVKVGTLHRNTAARRKSRLARRKKAVEIHHGWYTPA 180

Query: 181 SPAAA 185
           SPAAA
Sbjct: 181 SPAAA 184

[Close]
BLAST of Lsi04G020480 vs. TAIR 10
Match: AT3G15190.1 (chloroplast 30S ribosomal protein S20, putative )

HSP 1 Score: 184.5 bits (467), Expect = 7.7e-47
Identity = 116/187 (62.03%), Postives = 142/187 (75.94%), Query Frame = 0 

Query: 7   SCFALPSKFRSLSLNASSSCIPASP------SSSTL-RTLSFSSNIS-VSAFSNGCLSMS 66
           SC  L S+F+ LSL   S   P+S       +S+TL  +LSFS ++S   AFS G L + 
Sbjct: 10  SCATLESQFKVLSLKGISCSSPSSSFSNRRGASATLSSSLSFSQSVSQCVAFSTGNLWV- 69

Query: 67  KAQRPHRYSVVCE-AAPKTKADSAAKRARQAEKRRIYNKARKSEIKTRIKKVLEALDGLK 126
             Q+P R  +VCE AAP  KADSAAKRARQAEKRR+YNK++KSE +TR+KKVLEAL+GLK
Sbjct: 70  --QKPMRQLIVCEAAAPTKKADSAAKRARQAEKRRVYNKSKKSEARTRMKKVLEALEGLK 129

Query: 127 KKPEAQSEEVLPIEKLIAEAYSVIDKAVRVGTLHRNTAARRKSRLARRKKAVEIHHGWYT 185
           KK +AQ++E++ +EKLI EAYS IDKAV+V  LH+NT ARRKSRLARRKKAVEIHHGWY 
Sbjct: 130 KKTDAQADEIVTVEKLIGEAYSAIDKAVKVKALHKNTGARRKSRLARRKKAVEIHHGWYV 189

The following BLAST results are available for this feature:
BLAST of Lsi04G020480 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9ASV61.1e-4562.0330S ribosomal protein S20, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPS2... [more]
P821301.2e-4461.8030S ribosomal protein S20, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPS20 P... [more]
A7HJB04.8e-0947.1930S ribosomal protein S20 OS=Fervidobacterium nodosum (strain ATCC 35602 / DSM 5... [more]
Q8YWL34.8e-0945.0530S ribosomal protein S20 OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576... [more]
Q3M5D24.8e-0945.0530S ribosomal protein S20 OS=Trichormus variabilis (strain ATCC 29413 / PCC 7937... [more]
BLAST of Lsi04G020480 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1IG575.5e-7790.2730S ribosomal protein S20, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC... [more]
A0A5A7VMD21.2e-7688.5930S ribosomal protein S20 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo... [more]
A0A1S3CJU91.2e-7688.5930S ribosomal protein S20, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103501779... [more]
A0A6J1F6F18.0e-7689.7330S ribosomal protein S20, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=L... [more]
A0A0A0KZK95.2e-7587.50Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G630000 PE=3 SV=1[more]
BLAST of Lsi04G020480 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038899721.11.8e-8294.0230S ribosomal protein S20, chloroplastic [Benincasa hispida][more]
XP_022976587.11.1e-7690.2730S ribosomal protein S20, chloroplastic-like [Cucurbita maxima] >KAG6591939.1 3... [more]
XP_008463697.12.5e-7688.59PREDICTED: 30S ribosomal protein S20, chloroplastic [Cucumis melo] >KAA0066811.1... [more]
XP_023534903.17.4e-7689.7330S ribosomal protein S20, chloroplastic-like [Cucurbita pepo subsp. pepo][more]
XP_022935732.11.7e-7589.7330S ribosomal protein S20, chloroplastic-like [Cucurbita moschata][more]
BLAST of Lsi04G020480 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G15190.17.7e-4762.03chloroplast 30S ribosomal protein S20, putative [more]
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 99..119
NoneNo IPR availablePANTHERPTHR33398:SF530S RIBOSOMAL PROTEIN S20, CHLOROPLASTICcoord: 1..183
IPR002583Ribosomal protein S20PFAMPF01649Ribosomal_S20pcoord: 79..165
e-value: 2.5E-23
score: 82.5
IPR002583Ribosomal protein S20TIGRFAMTIGR00029TIGR00029coord: 78..164
e-value: 3.0E-18
score: 64.1
IPR002583Ribosomal protein S20PANTHERPTHR3339830S RIBOSOMAL PROTEIN S20coord: 1..183
IPR002583Ribosomal protein S20HAMAPMF_00500Ribosomal_S20coord: 57..168
score: 16.186001
IPR036510Ribosomal protein S20 superfamilyGENE3D1.20.58.110Ribosomal protein S20coord: 78..184
e-value: 5.2E-39
score: 134.8
IPR036510Ribosomal protein S20 superfamilySUPERFAMILY46992Ribosomal protein S20coord: 79..181

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi04G020480.1Lsi04G020480.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0015935 small ribosomal subunit
cellular_component GO:0005840 ribosome
molecular_function GO:0070181 small ribosomal subunit rRNA binding
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0003723 RNA binding