Lsi04G020230 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi04G020230
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
DescriptionUnknown protein
Locationchr04: 27327576 .. 27327779 (-)
RNA-Seq ExpressionLsi04G020230
SyntenyLsi04G020230
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGGAAGGCAGAGTGGGTCGTAACTCAAAAATGGGGGAAAGCCCGAGTGGCGAAAGAGAGAGAGAAAAAGGGGCGAGAAGAAACGGCTTTGGTGAGAGAAAAGGCGAGTACTTGTAGATGGGTTTTGCCATTTGTTGTACTTGGGGGAACTGTTCCCTTTCTCAAAGCTATCTTGCTTTCTTGGCTTGGTGACCAACCCTGA

mRNA sequence

ATGGGGAAGGCAGAGTGGGTCGTAACTCAAAAATGGGGGAAAGCCCGAGTGGCGAAAGAGAGAGAGAAAAAGGGGCGAGAAGAAACGGCTTTGGTGAGAGAAAAGGCGAGTACTTGTAGATGGGTTTTGCCATTTGTTGTACTTGGGGGAACTGTTCCCTTTCTCAAAGCTATCTTGCTTTCTTGGCTTGGTGACCAACCCTGA

Coding sequence (CDS)

ATGGGGAAGGCAGAGTGGGTCGTAACTCAAAAATGGGGGAAAGCCCGAGTGGCGAAAGAGAGAGAGAAAAAGGGGCGAGAAGAAACGGCTTTGGTGAGAGAAAAGGCGAGTACTTGTAGATGGGTTTTGCCATTTGTTGTACTTGGGGGAACTGTTCCCTTTCTCAAAGCTATCTTGCTTTCTTGGCTTGGTGACCAACCCTGA

Protein sequence

MGKAEWVVTQKWGKARVAKEREKKGREETALVREKASTCRWVLPFVVLGGTVPFLKAILLSWLGDQP
Homology
[Close]
BLAST of Lsi04G020230 vs. ExPASy TrEMBL
Match: A0A0A0L228 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G627780 PE=4 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 2.0e-24
Identity = 60/68 (88.24%), Postives = 61/68 (89.71%), Query Frame = 0 

Query: 2  GKAEWVVTQKWGKARV--AKEREKKGREETALVREKASTCRWVLPFVVLGGTVPFLKAIL 61
          G AEWVVTQKWGK RV   KE+EKKGREET LVREKASTCRWVLPFVVL GTVPFLKAIL
Sbjct: 24 GMAEWVVTQKWGKTRVGKGKEKEKKGREETVLVREKASTCRWVLPFVVLEGTVPFLKAIL 83

Query: 62 LSWLGDQP 68
          LSWLGDQP
Sbjct: 84 LSWLGDQP 91

[Close]
BLAST of Lsi04G020230 vs. NCBI nr
Match: KGN55079.1 (hypothetical protein Csa_011998 [Cucumis sativus])

HSP 1 Score: 120.9 bits (302), Expect = 4.1e-24
Identity = 60/68 (88.24%), Postives = 61/68 (89.71%), Query Frame = 0 

Query: 2  GKAEWVVTQKWGKARV--AKEREKKGREETALVREKASTCRWVLPFVVLGGTVPFLKAIL 61
          G AEWVVTQKWGK RV   KE+EKKGREET LVREKASTCRWVLPFVVL GTVPFLKAIL
Sbjct: 24 GMAEWVVTQKWGKTRVGKGKEKEKKGREETVLVREKASTCRWVLPFVVLEGTVPFLKAIL 83

Query: 62 LSWLGDQP 68
          LSWLGDQP
Sbjct: 84 LSWLGDQP 91

The following BLAST results are available for this feature:
BLAST of Lsi04G020230 vs.
Match NameE-valueIdentityDescription
BLAST of Lsi04G020230 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L2282.0e-2488.24Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G627780 PE=4 SV=1[more]
BLAST of Lsi04G020230 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN55079.14.1e-2488.24hypothetical protein Csa_011998 [Cucumis sativus][more]
BLAST of Lsi04G020230 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi04G020230.1Lsi04G020230.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane