Lsi04G019960 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi04G019960
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
DescriptionTransmembrane protein
Locationchr04: 27089172 .. 27091860 (-)
RNA-Seq ExpressionLsi04G019960
SyntenyLsi04G019960
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CTTCAGTCGGTCGAAAACCTATTCCGAAGCTTTGAGTTTTCATGTTTATCCTAAAAATAAGAACGTCGTTTTTCCCCCTAATCATTGGGAAGTTGAAATATCCGAAATTTTGACCTTTCCAGTTTCCTGCACACAGAGATCGCAGGGTTACGGCGACGGCGACGGCGTGAAGGTAGAAGTGAATGGCGGGAGAAGAGGTTGCTGGTCCGGCGGGCCCTAAGGTTCTCCGTCTCCTCTATTTCGCCGGCGCTGGATGTAATTTCTTCGATTCATCTCTTTTATTCTCTGTCTTCGATTCTGTGTTCTCCTAATCATTTATCATTCCGTTCGGTTATGTTATTCAGTCATTTTCACCATCGCGATAAACAAGTGGCGGGAGATCGAGCGCAATTCTCTGTTGGAACAACAGCAGAAGCAGCGGTTGAATCATCAATTATCGGAATCTCGTAATGATGCGGTGCAGAAAGTCGTCGAGTGATCTCAGGTTAGTTTGTTATATTCTAGAATTTCTCAGGTTATATCGCCATTACGATATTAGGATAATGATGTTGGATTCATAATTGATCATCCTGTGATTCTATGGTGTGAGGTCTGTCTCTTCTTTACGGATCAAAACTCTGCTCGCTCATTTTCTGTATCAATAATGGAAGGGGCAAACCCTTCTGAGGATGTAGCTTTGTCAACTATCACCTATAAGAAGAGAAAAGTGTAGTGATTACACTAATTGAGTGCAAACATATTGAAAGTGTCATTGATGACTGTGAGGGGAAAACAAGGGGAAAAAAAACAAAGGAACCTCTCTGAGATTAGAATTGTAAAGAAAAAGTAAGTGGGGTGTAACAAAAATAGAAAGGATAAAAATGGTTACCTATCTAAATCTTTGACTTCTGTCTTATGCATTGTGATTGAGGTGTGCAACATATGTTATCTTTTGTGATACAATAGAGAAAAGGGAGACACAAAACATATTGAGAAAGAGAATAAGCTCTCAGCCTTGCACACTGAAGCCGAATATTTCATATATATAGCTAGGTTAAAGTGGTTACAAGATAGTTGTAAATAAAGACTGAAGGAATAAATAATAAACCAAATACAAATCATTAAAGCAGAAAATAACAAGGGCTTAGATAATGTAGTGTAGCTAACATATTTACAATATACCATGCATATTGGCATCTTGAAATGTAGCCTGTGGCATTCTATTTCTGGCCCTCATACCTAGTGGTTCGGGCTTGTATCTGTTGTTGACTTAAAAATGCTGTTGTAATTACGCAACCAAGAGCAGCACAGCATGATAAGCATGTTCTTTTGTGCAGACTGGGCAAGCACTGCTAGTACGTTTTTCTCTATTTTGTTCTTAATTTCTGGCTGTATCATATTGAGGATAAGCCAAAGAGGATATTATTTGGTAGAGAAAAACTAGTTGGAGTAATCAACTTAACAATACAATAGAAGTTATTGACTTTCTAGCTTGGTAAATGAGGGATTTTTCTTTTGTGTAAGAGATGGGGCAAGTCTTGGACTTCTAGTTCATTCATTTGATGTATACCCCTTGGATTCAAATACCGTATTGTCTCAAAACAAAAGGTTATGTAGTTGACTTTTTTGAGTGGCTATCCTGTCCCTTAGTTCTAATAATTTCCTTCAATATTGAGATAATGCTTTCCTTTTCCACAAGCCAAAATTTCTAATGGACTTTAAAAGTGAGGCCTTAAGCATTTTCGTAGACTTTGTTGCGATAGCAACTAAAGTTTGTATAATGAAAGATTAGCTTATCCAAATTACTTTTCTAGAATATTTTATACTTCACCAAAACATCCTTCCAGGCACATCTGCGTTAGTATGTCCTTTTCAATTCGAAAGGTGTCATAATAATTATTCTTGTAATCAAAGCTTTAATGCTTTTGTGCTTGATATGGATGTCTTTTGGTGACGGTCATTTGCTTAGTTCCATTACAACACTACATCTGCCAGAAATCTTTTGGACTTTCATATTTAATTGTAATTCATTTCTAGTGGAGGAATTATTTTTCTTCTCTCTAAATTTTATCATTAATATAACTTAATTTCTTTAAAATAAAAGAATAGAAGGGTATCCCAGAGCCTACAAAGGACCGTTAATGTGATATCTACTGTTTTATGTTTTTAAATATGTAGATATAATACTTAATTCAAGTCCCTTATTTTCCCCTTTAAGCTAATCCTTAGTGTTTGCATGTCAGGGGTGCTACTCAAGGACATTAAGATGGTTTCAGCTCAACAGTTAAGCCCCTCATTTTCCACCAGATTTATTGTTATTGTTAAAAGTACATGTAGGATTATCTATGTTTTTTAGCTGTGCTGCTGGGTAGATTTGAGCCAATACCAAGGAAATGATGCCTCTGTCAATAGTACTGTTTTCTTCCTTCATCCCTAATCCAGCCATCTCTCTGTCTCTAATCTCTATTATATGGACAAGTTCATCATGCTCTGAAGGAAACATCACTTTCAACTTGTACTACCAAAAGCGTAACTAGAATAAATTTCTCCTTTTCTACCTGTTGGCCAATTTTGAAATTCATTTCTAATTGTCTATGTTCATTTCTAATTGAAAGTTCATTTCTTAATCAATCGTCTATATAGATGGATAAAGATGCTTTTAGTTTTGGGCTAGTTGAGAATCATATTTTAAAACAACTTTCAAATTCAA

mRNA sequence

CTTCAGTCGGTCGAAAACCTATTCCGAAGCTTTGAGTTTTCATGTTTATCCTAAAAATAAGAACGTCGTTTTTCCCCCTAATCATTGGGAAGTTGAAATATCCGAAATTTTGACCTTTCCAGTTTCCTGCACACAGAGATCGCAGGGTTACGGCGACGGCGACGGCGTGAAGGTAGAAGTGAATGGCGGGAGAAGAGGTTGCTGGTCCGGCGGGCCCTAAGGTTCTCCGTCTCCTCTATTTCGCCGGCGCTGGATTCATTTTCACCATCGCGATAAACAAGTGGCGGGAGATCGAGCGCAATTCTCTGTTGGAACAACAGCAGAAGCAGCGGTTGAATCATCAATTATCGGAATCTCGTAATGATGCGGTGCAGAAAGTCGTCGAGTGATCTCAGGGGTGCTACTCAAGGACATTAAGATGGTTTCAGCTCAACAGTTAAGCCCCTCATTTTCCACCAGATTTATTGTTATTGTTAAAAGTACATGTAGGATTATCTATGTTTTTTAGCTGTGCTGCTGGGTAGATTTGAGCCAATACCAAGGAAATGATGCCTCTGTCAATAGTACTGTTTTCTTCCTTCATCCCTAATCCAGCCATCTCTCTGTCTCTAATCTCTATTATATGGACAAGTTCATCATGCTCTGAAGGAAACATCACTTTCAACTTGTACTACCAAAAGCGTAACTAGAATAAATTTCTCCTTTTCTACCTGTTGGCCAATTTTGAAATTCATTTCTAATTGTCTATGTTCATTTCTAATTGAAAGTTCATTTCTTAATCAATCGTCTATATAGATGGATAAAGATGCTTTTAGTTTTGGGCTAGTTGAGAATCATATTTTAAAACAACTTTCAAATTCAA

Coding sequence (CDS)

ATGGCGGGAGAAGAGGTTGCTGGTCCGGCGGGCCCTAAGGTTCTCCGTCTCCTCTATTTCGCCGGCGCTGGATTCATTTTCACCATCGCGATAAACAAGTGGCGGGAGATCGAGCGCAATTCTCTGTTGGAACAACAGCAGAAGCAGCGGTTGAATCATCAATTATCGGAATCTCGTAATGATGCGGTGCAGAAAGTCGTCGAGTGA

Protein sequence

MAGEEVAGPAGPKVLRLLYFAGAGFIFTIAINKWREIERNSLLEQQQKQRLNHQLSESRNDAVQKVVE
Homology
[Close]
BLAST of Lsi04G019960 vs. ExPASy TrEMBL
Match: A0A0A0L208 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G625040 PE=4 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 5.8e-24
Identity = 60/68 (88.24%), Postives = 63/68 (92.65%), Query Frame = 0 

Query: 1  MAGEEVAGPAGPKVLRLLYFAGAGFIFTIAINKWREIERNSLLEQQQKQRLNHQLSESRN 60
          M GEEV GPAGPK+LRLLYFAGAGFI + AINKWREIERNSLL+QQQKQRLNHQLSES N
Sbjct: 1  MTGEEVTGPAGPKILRLLYFAGAGFIVSFAINKWREIERNSLLQQQQKQRLNHQLSESPN 60

Query: 61 DAVQKVVE 69
          DAVQKVVE
Sbjct: 61 DAVQKVVE 68

[Close]
BLAST of Lsi04G019960 vs. ExPASy TrEMBL
Match: A0A5D3DXD1 (Transmembrane protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384G00850 PE=4 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 1.3e-23
Identity = 59/68 (86.76%), Postives = 62/68 (91.18%), Query Frame = 0 

Query: 1  MAGEEVAGPAGPKVLRLLYFAGAGFIFTIAINKWREIERNSLLEQQQKQRLNHQLSESRN 60
          M GEEV GPAGPK+LRLLYFAGAGFI + AINKWREIERNSLL+Q QKQRLNHQLSESRN
Sbjct: 1  MTGEEVTGPAGPKILRLLYFAGAGFICSFAINKWREIERNSLLQQHQKQRLNHQLSESRN 60

Query: 61 DAVQKVVE 69
          D VQKVVE
Sbjct: 61 DTVQKVVE 68

[Close]
BLAST of Lsi04G019960 vs. ExPASy TrEMBL
Match: A0A1S3CKG5 (uncharacterized protein LOC103501828 OS=Cucumis melo OX=3656 GN=LOC103501828 PE=4 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 1.3e-23
Identity = 59/68 (86.76%), Postives = 62/68 (91.18%), Query Frame = 0 

Query: 1  MAGEEVAGPAGPKVLRLLYFAGAGFIFTIAINKWREIERNSLLEQQQKQRLNHQLSESRN 60
          M GEEV GPAGPK+LRLLYFAGAGFI + AINKWREIERNSLL+Q QKQRLNHQLSESRN
Sbjct: 1  MTGEEVTGPAGPKILRLLYFAGAGFICSFAINKWREIERNSLLQQHQKQRLNHQLSESRN 60

Query: 61 DAVQKVVE 69
          D VQKVVE
Sbjct: 61 DTVQKVVE 68

[Close]
BLAST of Lsi04G019960 vs. ExPASy TrEMBL
Match: A0A090ITT6 (Uncharacterized protein OS=Cucumis sativus OX=3659 PE=2 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 1.7e-23
Identity = 59/68 (86.76%), Postives = 63/68 (92.65%), Query Frame = 0 

Query: 1  MAGEEVAGPAGPKVLRLLYFAGAGFIFTIAINKWREIERNSLLEQQQKQRLNHQLSESRN 60
          M G+EV GPAGPK+LRLLYFAGAGFI + AINKWREIERNSLL+QQQKQRLNHQLSES N
Sbjct: 1  MTGKEVTGPAGPKILRLLYFAGAGFIVSFAINKWREIERNSLLQQQQKQRLNHQLSESPN 60

Query: 61 DAVQKVVE 69
          DAVQKVVE
Sbjct: 61 DAVQKVVE 68

[Close]
BLAST of Lsi04G019960 vs. ExPASy TrEMBL
Match: A0A6J1C1U1 (uncharacterized protein LOC111006563 OS=Momordica charantia OX=3673 GN=LOC111006563 PE=4 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 5.5e-22
Identity = 55/68 (80.88%), Postives = 61/68 (89.71%), Query Frame = 0 

Query: 1  MAGEEVAGPAGPKVLRLLYFAGAGFIFTIAINKWREIERNSLLEQQQKQRLNHQLSESRN 60
          MAGEEV+GPAGPKVLR LYFAGAGF+F IA+NKWRE+ER SLL+Q QKQ LNHQ SE+ N
Sbjct: 1  MAGEEVSGPAGPKVLRFLYFAGAGFVFAIAVNKWREMERRSLLQQHQKQMLNHQFSETPN 60

Query: 61 DAVQKVVE 69
          DAVQKVVE
Sbjct: 61 DAVQKVVE 68

[Close]
BLAST of Lsi04G019960 vs. NCBI nr
Match: XP_038897241.1 (uncharacterized protein LOC120085366 [Benincasa hispida])

HSP 1 Score: 131.3 bits (329), Expect = 3.1e-27
Identity = 67/68 (98.53%), Postives = 68/68 (100.00%), Query Frame = 0 

Query: 1  MAGEEVAGPAGPKVLRLLYFAGAGFIFTIAINKWREIERNSLLEQQQKQRLNHQLSESRN 60
          MAGEEVAGPAGPKVLRLLYFAGAGFIFTIAINKWREIERNSLLEQQQKQRLNHQLSESRN
Sbjct: 1  MAGEEVAGPAGPKVLRLLYFAGAGFIFTIAINKWREIERNSLLEQQQKQRLNHQLSESRN 60

Query: 61 DAVQKVVE 69
          D+VQKVVE
Sbjct: 61 DSVQKVVE 68

[Close]
BLAST of Lsi04G019960 vs. NCBI nr
Match: XP_011654034.1 (uncharacterized protein LOC105435291 [Cucumis sativus] >XP_031739554.1 uncharacterized protein LOC105435291 [Cucumis sativus] >KGN55049.1 hypothetical protein Csa_012569 [Cucumis sativus])

HSP 1 Score: 119.4 bits (298), Expect = 1.2e-23
Identity = 60/68 (88.24%), Postives = 63/68 (92.65%), Query Frame = 0 

Query: 1  MAGEEVAGPAGPKVLRLLYFAGAGFIFTIAINKWREIERNSLLEQQQKQRLNHQLSESRN 60
          M GEEV GPAGPK+LRLLYFAGAGFI + AINKWREIERNSLL+QQQKQRLNHQLSES N
Sbjct: 1  MTGEEVTGPAGPKILRLLYFAGAGFIVSFAINKWREIERNSLLQQQQKQRLNHQLSESPN 60

Query: 61 DAVQKVVE 69
          DAVQKVVE
Sbjct: 61 DAVQKVVE 68

[Close]
BLAST of Lsi04G019960 vs. NCBI nr
Match: XP_008463762.1 (PREDICTED: uncharacterized protein LOC103501828 [Cucumis melo] >KAA0066753.1 transmembrane protein [Cucumis melo var. makuwa] >TYK27900.1 transmembrane protein [Cucumis melo var. makuwa])

HSP 1 Score: 118.2 bits (295), Expect = 2.7e-23
Identity = 59/68 (86.76%), Postives = 62/68 (91.18%), Query Frame = 0 

Query: 1  MAGEEVAGPAGPKVLRLLYFAGAGFIFTIAINKWREIERNSLLEQQQKQRLNHQLSESRN 60
          M GEEV GPAGPK+LRLLYFAGAGFI + AINKWREIERNSLL+Q QKQRLNHQLSESRN
Sbjct: 1  MTGEEVTGPAGPKILRLLYFAGAGFICSFAINKWREIERNSLLQQHQKQRLNHQLSESRN 60

Query: 61 DAVQKVVE 69
          D VQKVVE
Sbjct: 61 DTVQKVVE 68

[Close]
BLAST of Lsi04G019960 vs. NCBI nr
Match: CED89884.1 (uncharacterized protein [Cucumis sativus])

HSP 1 Score: 117.9 bits (294), Expect = 3.5e-23
Identity = 59/68 (86.76%), Postives = 63/68 (92.65%), Query Frame = 0 

Query: 1  MAGEEVAGPAGPKVLRLLYFAGAGFIFTIAINKWREIERNSLLEQQQKQRLNHQLSESRN 60
          M G+EV GPAGPK+LRLLYFAGAGFI + AINKWREIERNSLL+QQQKQRLNHQLSES N
Sbjct: 1  MTGKEVTGPAGPKILRLLYFAGAGFIVSFAINKWREIERNSLLQQQQKQRLNHQLSESPN 60

Query: 61 DAVQKVVE 69
          DAVQKVVE
Sbjct: 61 DAVQKVVE 68

[Close]
BLAST of Lsi04G019960 vs. NCBI nr
Match: XP_023522224.1 (uncharacterized protein LOC111786101 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 117.1 bits (292), Expect = 6.0e-23
Identity = 58/68 (85.29%), Postives = 64/68 (94.12%), Query Frame = 0 

Query: 1  MAGEEVAGPAGPKVLRLLYFAGAGFIFTIAINKWREIERNSLLEQQQKQRLNHQLSESRN 60
          M GEEVAGPAGPKVLRLLYFAGAGF+FTIA+NKWREIER SLL+QQQKQRL+HQ +ES N
Sbjct: 1  MTGEEVAGPAGPKVLRLLYFAGAGFVFTIAMNKWREIERKSLLQQQQKQRLDHQFAESPN 60

Query: 61 DAVQKVVE 69
          DAVQKVV+
Sbjct: 61 DAVQKVVK 68

[Close]
BLAST of Lsi04G019960 vs. TAIR 10
Match: AT1G16916.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 67.8 bits (164), Expect = 3.9e-12
Identity = 32/61 (52.46%), Postives = 45/61 (73.77%), Query Frame = 0 

Query: 8  GPAGPKVLRLLYFAGAGFIFTIAINKWREIERNSLLEQQQKQRLNHQLSESRNDAVQKVV 67
          GP  PK+LR++YF GAGF+ T AINKWRE+ERNSLL+Q+Q++     +     D+VQK +
Sbjct: 5  GPPAPKMLRMVYFVGAGFLCTFAINKWREMERNSLLKQEQEKNQQGDVGLLPRDSVQKAM 64

Query: 68 E 69
          +
Sbjct: 65 K 65

The following BLAST results are available for this feature:
BLAST of Lsi04G019960 vs.
Match NameE-valueIdentityDescription
BLAST of Lsi04G019960 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L2085.8e-2488.24Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G625040 PE=4 SV=1[more]
A0A5D3DXD11.3e-2386.76Transmembrane protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold38... [more]
A0A1S3CKG51.3e-2386.76uncharacterized protein LOC103501828 OS=Cucumis melo OX=3656 GN=LOC103501828 PE=... [more]
A0A090ITT61.7e-2386.76Uncharacterized protein OS=Cucumis sativus OX=3659 PE=2 SV=1[more]
A0A6J1C1U15.5e-2280.88uncharacterized protein LOC111006563 OS=Momordica charantia OX=3673 GN=LOC111006... [more]
BLAST of Lsi04G019960 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038897241.13.1e-2798.53uncharacterized protein LOC120085366 [Benincasa hispida][more]
XP_011654034.11.2e-2388.24uncharacterized protein LOC105435291 [Cucumis sativus] >XP_031739554.1 uncharact... [more]
XP_008463762.12.7e-2386.76PREDICTED: uncharacterized protein LOC103501828 [Cucumis melo] >KAA0066753.1 tra... [more]
CED89884.13.5e-2386.76uncharacterized protein [Cucumis sativus][more]
XP_023522224.16.0e-2385.29uncharacterized protein LOC111786101 isoform X2 [Cucurbita pepo subsp. pepo][more]
BLAST of Lsi04G019960 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G16916.13.9e-1252.46unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi04G019960.1Lsi04G019960.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane