Lsi04G019810 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi04G019810
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
DescriptionSm protein F
Locationchr04: 26859855 .. 26863483 (-)
RNA-Seq ExpressionLsi04G019810
SyntenyLsi04G019810
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AACTCCTTGTGCCAACAACACACTCTTAATCTTTACTTTGGGGTTGATTTTAGAAAAGAGAAATTAGTTAGGGAATTCCCTCCGCTTTTTAATTCAAAGGGAAAAGAAAAAGAGAAATTAGAATAAAGAGAAAGAAAGGGGAAAAAGAAAACCCTAGCCTCTCTCCTTTTCTCTCCTTTCCTTGCGTCCTCAACCGTGCCGGCCTCAAGCCCTTCACCATCGTGTTCTTCTTCCTCTGGCGAGTTTCGACGGTGAGACCTCCGGCGATCAGCAGTTCAGCTTGTCATTTCGGAGACCGCCATTTTCTACGTCTCCTTGTTCTTCCGAGCCTCCACAGATTCCACACAAGTCCTTGCTTGTCATTTCGGAACCATGGTAAGCAAGAATTTTCTTTTTCCTTGATTTTCGATGTGGAACGACTGTTAATGTACCCGTATGTAGTACTGATTTTATCTTTTTGACTCGGCAGCTGTCGTTTTTGTTTGGGCTGGAGGTTTCGATTTTATGACTATCTCCTGTGTTGATAATATGGAGCTTTGACATCTTGAATCTTTTGTTTATGGGCCCTCTGCTTTGTTATGGTCCGTTTTGTTTTTCTTTTTGCTTCTTGTGTTATTATGGTTTAATCGTCACTTTTGAGCGGATTTCCTTTGTATTTACTGGGATTGCTCCTGATTATTTCATTTATCAATGAAATATTTCTTATCCAAAAAAAAATGTACCCGTATGTAGTATAAGATTATTGGACGAATTTACGATTGATATCACTGATTCTTCTATTATGTTGATTTTTGGTTGGTTAAGGCCCCCCCACCCACACACACACCATTTTACCTTGATTAATAAAAGATAATTCGGTTTAGTTAGAATTTCTGTTATTTAAATCTGTTAATTTTAACAGCCTTTTTCCTTCTCACACTTGTATGTATATGGTTGGAGATATGATTAATAAGGAGTGAAGGATATTTTTAATTTTGCTTCTCTTCTAATATGGTATCATTGACACTTTCCTTCCCAAATAAACCCTTTCATCTTCAACCTCTCGTTTCCTTCCACCATGACTACCGAAATTTCTTCTACTGATTCTCCTGTAAATCCTTCAATCCCTACCACAAATTCCACGAATTCAACGGAAAATCCTTATACACTTGCTGTGAATTCCTCTTTACACAGTCAGACTCAAACCTACCAAGCTGCCATACACATTGCCAAAAATCCTATGTTTCATGAACGAATGAAACATATAGAGCTTGATTGACATTTTGTAAGAGAACAAGTACTTGATAGATCCATTAAACTCATGTCCATACGTTCTTCAGATCAACTAGCAGATGCTTTTACTAAACCTCTTCCAGCTGCTTCTTTGTTTCCTCTGTTATGCAAGATGGAAGTTCAAGACATTTTCTCTCCATCTTGAAGGGGGAGTATTAGAAGATAATTTGGTTTAGTTAGAATTTCTGTTATTTTGTTAAACTTCTGTTATTTAAATCTGTTAATTTTAACAGCCTTTTCCCTTCTCACACTTGTATATATGTGGTTGGAGATATGATGAACAAAGAGTGAAGGATATTTTTAATTTTGCTTCTCTTCTAATAATTCTTAAATGACGCTTAATTCTTTATTTTGGTTGTTTGGATATTGTAGAGCATCCCAGTTAACCCGAAGCCGTTTTTGAACAATTTGACTGGAAAGACTGTGGTTGTGAAACTCAAGTGGGGGATGGAGTACAAAGGTTTGCTTCTATCTGCTGTTTGTTTTCCTCGTTTCTCCTGCCTGCTGGAGTTTGTACTGACTTTCCTTTACATTTCAGGCTTTCTTGTCTCGGTGGACTCGTACATGAACTTGCAGGTGTGTTTTCTACTTCAATTGAAACTAATTTGGATGTTTCTTTTCGAGTGTGATTGTATCCTTCCCTCTGCTTCAGGACTTAGTTTATAACGTAGTATCTGTGAACTATTTTGACTCTAATAAATTTATGTACTATGAGAAGAGAATTTAGTGTAATTGTCTTTTCTCTTGAGAGATTGTTCAAACGTAGCACTAACCAGTTCAGTGTCCTTTATCTCTGAATCTAATTTGATGTGTTCTGCTTGTATTAAAAGTTCCCTCTTACAACTATTTATCATTTTCTATTTTATAGGGCTTGGATTTTTTCTGAAAAACTAGTTTGGAAAATATGTTGTCCATTTTTGTTTTCTCAATATTTATCGTGCATGTTGTAATTGGCAAGCTTAGTCAAGTGGTTTAGGCATCTCCACTTCCTCCAAGGGTTCGTAGGTTTGCCTCCCACTCTCGCAATTGTTTTAATATTCTCAAAAGAAAGAGTAAGTTCATTTGTTCTAAAATATAGATCATCAATGGTTACAAATTAAAAGGTGTGAAGTAAAATCAACCTTTTCTCTGAATTTTTTGTTTGAAAAGCTAAAAAATTTATTTGAAAATGGTTTTCACATAAGCCCATAGTCTCATTCAGATGCTGATTCCAGCATACAACTTTTTAAATACAGCTTGCCAATACTGAGGAATATATCGACGGACAATTTACTGGGAGTCTTGGAGAAATATTGATCAGGTAACCTTCTCTCAGTGATTGAAAATCACAATATCCGATGCATCAATTCTTATTTGTTGGTAGTAATATGATGGGAATGTTGTTAGGAACATTATTAGACTGCCAAGGGTATATTATACTTTCCCAAGGGTAAGAAAAGAGGAGAGCGGAGAATTGTTTAGTAGTTAAGGCTTGAGTGAGTATATTCAAGAGAGGGAAAGTTCTTAATATCTCTAATACTTTGTTATCTTGTAGTTTTATATTTTAGCATATTTAGATTCCATCATAATATGCCCTGTTCATGATATAAATGCTTAAAGAAAAATATGAGAGAATATAACAGACACAACAAGTACGCATTTGCATTTATTTTACTACTGCAAGGATATGTTTGTAGTCTTTGTCCAGTGCACGGTGCACTTGGTCATGCCCTGTTAAATTTTAGAGCTTTCATGCTTAACGATGAATTATTCCACAATTTCTGACACCAAACATGACAATTTTCCTGTTTTTTCCTTGCAGGTGTAATAATGTTCTTTATCTTCGTGGAGTACCGGAGGATGAAGAGATTGAAGATGCCGAGCGTGAATAGCATGTAAAATTTTAGCAGCTCTTCGATGTCGTAGTAGCAGTAAAGTATTTAGCTTTCTAGTTCTCTAGTTTTTCTTTCTTCTGTTGCTTAATTTGTATCTTGATGTTGATACTATTTACCTTATCTTAAAGGGCAGGAACACCCTCTGCTTTGGTCGATTTCAAACTTGCAACAATCATTCGGTTTTCACTATTGTAGTAGGGAGATTGAATGGTAGAAAAAGTATTCTTGAATCTGAATGTAACATCTATGTTTCCTGGTAGCTTTGAATTGCTTCAGTTCTATATAAGAATATAGTTGAGTTTTTTTATAATTTGTTCATGTGGAATGCAATGGATGGGAATATATTTGTGACCTTGTACAACTATTTTATTTTTTTTTGGTTAGTACAACACTGCGGGGTGGGGATTAAATCTCCAACCTCTAGAGACGGAGCACATGCCAATACTACCAAGCCAAAGCTCATTTTGACGACTTGGTACAACA

mRNA sequence

AACTCCTTGTGCCAACAACACACTCTTAATCTTTACTTTGGGGTTGATTTTAGAAAAGAGAAATTAGTTAGGGAATTCCCTCCGCTTTTTAATTCAAAGGGAAAAGAAAAAGAGAAATTAGAATAAAGAGAAAGAAAGGGGAAAAAGAAAACCCTAGCCTCTCTCCTTTTCTCTCCTTTCCTTGCGTCCTCAACCGTGCCGGCCTCAAGCCCTTCACCATCGTGTTCTTCTTCCTCTGGCGAGTTTCGACGGTGAGACCTCCGGCGATCAGCAGTTCAGCTTGTCATTTCGGAGACCGCCATTTTCTACGTCTCCTTGTTCTTCCGAGCCTCCACAGATTCCACACAAGTCCTTGCTTGTCATTTCGGAACCATGAGCATCCCAGTTAACCCGAAGCCGTTTTTGAACAATTTGACTGGAAAGACTGTGGTTGTGAAACTCAAGTGGGGGATGGAGTACAAAGGCTTTCTTGTCTCGGTGGACTCGTACATGAACTTGCAGCTTGCCAATACTGAGGAATATATCGACGGACAATTTACTGGGAGTCTTGGAGAAATATTGATCAGGTGTAATAATGTTCTTTATCTTCGTGGAGTACCGGAGGATGAAGAGATTGAAGATGCCGAGCGTGAATAGCATGGCAGGAACACCCTCTGCTTTGGTCGATTTCAAACTTGCAACAATCATTCGGTTTTCACTATTGTAGTAGGGAGATTGAATGGTAGAAAAAGTATTCTTGAATCTGAATGTAACATCTATGTTTCCTGGTAGCTTTGAATTGCTTCAGTTCTATATAAGAATATAGTTGAGTTTTTTTATAATTTGTTCATGTGGAATGCAATGGATGGGAATATATTTGTGACCTTGTACAACTATTTTATTTTTTTTTGGTTAGTACAACACTGCGGGGTGGGGATTAAATCTCCAACCTCTAGAGACGGAGCACATGCCAATACTACCAAGCCAAAGCTCATTTTGACGACTTGGTACAACA

Coding sequence (CDS)

ATGAGCATCCCAGTTAACCCGAAGCCGTTTTTGAACAATTTGACTGGAAAGACTGTGGTTGTGAAACTCAAGTGGGGGATGGAGTACAAAGGCTTTCTTGTCTCGGTGGACTCGTACATGAACTTGCAGCTTGCCAATACTGAGGAATATATCGACGGACAATTTACTGGGAGTCTTGGAGAAATATTGATCAGGTGTAATAATGTTCTTTATCTTCGTGGAGTACCGGAGGATGAAGAGATTGAAGATGCCGAGCGTGAATAG

Protein sequence

MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGEILIRCNNVLYLRGVPEDEEIEDAERE
Homology
[Close]
BLAST of Lsi04G019810 vs. ExPASy Swiss-Prot
Match: Q9SUM2 (Probable small nuclear ribonucleoprotein F OS=Arabidopsis thaliana OX=3702 GN=At4g30220 PE=3 SV=1)

HSP 1 Score: 164.5 bits (415), Expect = 5.5e-40
Identity = 75/86 (87.21%), Postives = 83/86 (96.51%), Query Frame = 0 

Query: 2  SIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGE 61
          +IPVNPKPFLNNLTGKTV+VKLKWGMEYKGFL SVDSYMNLQL NTEEYIDGQ TG+LGE
Sbjct: 3  TIPVNPKPFLNNLTGKTVIVKLKWGMEYKGFLASVDSYMNLQLGNTEEYIDGQLTGNLGE 62

Query: 62 ILIRCNNVLYLRGVPEDEEIEDAERE 88
          ILIRCNNVLY+RGVPEDEE+EDA+++
Sbjct: 63 ILIRCNNVLYVRGVPEDEELEDADQD 88

[Close]
BLAST of Lsi04G019810 vs. ExPASy Swiss-Prot
Match: Q3T0Z8 (Small nuclear ribonucleoprotein F OS=Bos taurus OX=9913 GN=SNRPF PE=3 SV=2)

HSP 1 Score: 142.9 bits (359), Expect = 1.7e-33
Identity = 64/80 (80.00%), Postives = 73/80 (91.25%), Query Frame = 0 

Query: 1  MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLG 60
          MS+P+NPKPFLN LTGK V+VKLKWGMEYKG+LVSVD YMN+QLANTEEYIDG  +G LG
Sbjct: 1  MSLPLNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLG 60

Query: 61 EILIRCNNVLYLRGVPEDEE 81
          E+LIRCNNVLY+RGV E+EE
Sbjct: 61 EVLIRCNNVLYIRGVEEEEE 80

[Close]
BLAST of Lsi04G019810 vs. ExPASy Swiss-Prot
Match: P62306 (Small nuclear ribonucleoprotein F OS=Homo sapiens OX=9606 GN=SNRPF PE=1 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 1.7e-33
Identity = 64/80 (80.00%), Postives = 73/80 (91.25%), Query Frame = 0 

Query: 1  MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLG 60
          MS+P+NPKPFLN LTGK V+VKLKWGMEYKG+LVSVD YMN+QLANTEEYIDG  +G LG
Sbjct: 1  MSLPLNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLG 60

Query: 61 EILIRCNNVLYLRGVPEDEE 81
          E+LIRCNNVLY+RGV E+EE
Sbjct: 61 EVLIRCNNVLYIRGVEEEEE 80

[Close]
BLAST of Lsi04G019810 vs. ExPASy Swiss-Prot
Match: P62307 (Small nuclear ribonucleoprotein F OS=Mus musculus OX=10090 GN=Snrpf PE=1 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 1.7e-33
Identity = 64/80 (80.00%), Postives = 73/80 (91.25%), Query Frame = 0 

Query: 1  MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLG 60
          MS+P+NPKPFLN LTGK V+VKLKWGMEYKG+LVSVD YMN+QLANTEEYIDG  +G LG
Sbjct: 1  MSLPLNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLG 60

Query: 61 EILIRCNNVLYLRGVPEDEE 81
          E+LIRCNNVLY+RGV E+EE
Sbjct: 61 EVLIRCNNVLYIRGVEEEEE 80

[Close]
BLAST of Lsi04G019810 vs. ExPASy Swiss-Prot
Match: P62321 (Small nuclear ribonucleoprotein F OS=Xenopus laevis OX=8355 GN=snrpf PE=3 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 1.7e-33
Identity = 64/80 (80.00%), Postives = 73/80 (91.25%), Query Frame = 0 

Query: 1  MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLG 60
          MS+P+NPKPFLN LTGK V+VKLKWGMEYKG+LVSVD YMN+QLANTEEYIDG  +G LG
Sbjct: 1  MSLPLNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLG 60

Query: 61 EILIRCNNVLYLRGVPEDEE 81
          E+LIRCNNVLY+RGV E+EE
Sbjct: 61 EVLIRCNNVLYIRGVEEEEE 80

[Close]
BLAST of Lsi04G019810 vs. ExPASy TrEMBL
Match: A0A1S3CKH5 (Sm protein F OS=Cucumis melo OX=3656 GN=LOC103501840 PE=3 SV=1)

HSP 1 Score: 179.1 bits (453), Expect = 8.0e-42
Identity = 86/87 (98.85%), Postives = 87/87 (100.00%), Query Frame = 0 

Query: 1  MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLG 60
          MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLG
Sbjct: 1  MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLG 60

Query: 61 EILIRCNNVLYLRGVPEDEEIEDAERE 88
          EILIRCNNVLYLRGVPEDEEIEDAER+
Sbjct: 61 EILIRCNNVLYLRGVPEDEEIEDAERD 87

[Close]
BLAST of Lsi04G019810 vs. ExPASy TrEMBL
Match: A0A5D3DWN8 (Sm protein F OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384G00490 PE=3 SV=1)

HSP 1 Score: 179.1 bits (453), Expect = 8.0e-42
Identity = 86/87 (98.85%), Postives = 87/87 (100.00%), Query Frame = 0 

Query: 1  MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLG 60
          MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLG
Sbjct: 1  MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLG 60

Query: 61 EILIRCNNVLYLRGVPEDEEIEDAERE 88
          EILIRCNNVLYLRGVPEDEEIEDAER+
Sbjct: 61 EILIRCNNVLYLRGVPEDEEIEDAERD 87

[Close]
BLAST of Lsi04G019810 vs. ExPASy TrEMBL
Match: A0A6J1CSK0 (Sm protein F OS=Momordica charantia OX=3673 GN=LOC111013917 PE=3 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 1.0e-41
Identity = 86/87 (98.85%), Postives = 86/87 (98.85%), Query Frame = 0 

Query: 1  MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLG 60
          MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLG
Sbjct: 1  MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLG 60

Query: 61 EILIRCNNVLYLRGVPEDEEIEDAERE 88
          EILIRCNNVLYLRGVPEDEEIED ERE
Sbjct: 61 EILIRCNNVLYLRGVPEDEEIEDVERE 87

[Close]
BLAST of Lsi04G019810 vs. ExPASy TrEMBL
Match: A0A7J6FQ66 (Sm protein F OS=Cannabis sativa OX=3483 GN=F8388_004063 PE=3 SV=1)

HSP 1 Score: 177.2 bits (448), Expect = 3.0e-41
Identity = 85/87 (97.70%), Postives = 86/87 (98.85%), Query Frame = 0 

Query: 1  MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLG 60
          MSIPVNPKPFLNNLTGKTV VKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTG+LG
Sbjct: 1  MSIPVNPKPFLNNLTGKTVFVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGNLG 60

Query: 61 EILIRCNNVLYLRGVPEDEEIEDAERE 88
          EILIRCNNVLYLRGVPEDEEIEDAERE
Sbjct: 61 EILIRCNNVLYLRGVPEDEEIEDAERE 87

[Close]
BLAST of Lsi04G019810 vs. ExPASy TrEMBL
Match: A0A7J6EH77 (Sm protein F OS=Cannabis sativa OX=3483 GN=F8388_024419 PE=3 SV=1)

HSP 1 Score: 177.2 bits (448), Expect = 3.0e-41
Identity = 85/87 (97.70%), Postives = 86/87 (98.85%), Query Frame = 0 

Query: 1   MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLG 60
           MSIPVNPKPFLNNLTGKTV VKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTG+LG
Sbjct: 80  MSIPVNPKPFLNNLTGKTVFVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGNLG 139

Query: 61  EILIRCNNVLYLRGVPEDEEIEDAERE 88
           EILIRCNNVLYLRGVPEDEEIEDAERE
Sbjct: 140 EILIRCNNVLYLRGVPEDEEIEDAERE 166

[Close]
BLAST of Lsi04G019810 vs. NCBI nr
Match: XP_004146017.2 (probable small nuclear ribonucleoprotein F isoform X1 [Cucumis sativus] >XP_008463776.1 PREDICTED: probable small nuclear ribonucleoprotein F [Cucumis melo] >XP_008463777.1 PREDICTED: probable small nuclear ribonucleoprotein F [Cucumis melo] >XP_011654028.1 probable small nuclear ribonucleoprotein F isoform X1 [Cucumis sativus] >XP_038897243.1 probable small nuclear ribonucleoprotein F [Benincasa hispida] >TYK27869.1 putative small nuclear ribonucleoprotein F [Cucumis melo var. makuwa] >KAE8649817.1 hypothetical protein Csa_012166 [Cucumis sativus])

HSP 1 Score: 179.1 bits (453), Expect = 1.6e-41
Identity = 86/87 (98.85%), Postives = 87/87 (100.00%), Query Frame = 0 

Query: 1  MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLG 60
          MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLG
Sbjct: 1  MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLG 60

Query: 61 EILIRCNNVLYLRGVPEDEEIEDAERE 88
          EILIRCNNVLYLRGVPEDEEIEDAER+
Sbjct: 61 EILIRCNNVLYLRGVPEDEEIEDAERD 87

[Close]
BLAST of Lsi04G019810 vs. NCBI nr
Match: XP_022144158.1 (probable small nuclear ribonucleoprotein F [Momordica charantia])

HSP 1 Score: 178.7 bits (452), Expect = 2.1e-41
Identity = 86/87 (98.85%), Postives = 86/87 (98.85%), Query Frame = 0 

Query: 1  MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLG 60
          MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLG
Sbjct: 1  MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLG 60

Query: 61 EILIRCNNVLYLRGVPEDEEIEDAERE 88
          EILIRCNNVLYLRGVPEDEEIED ERE
Sbjct: 61 EILIRCNNVLYLRGVPEDEEIEDVERE 87

[Close]
BLAST of Lsi04G019810 vs. NCBI nr
Match: XP_030480982.1 (probable small nuclear ribonucleoprotein F [Cannabis sativa] >XP_030485031.1 probable small nuclear ribonucleoprotein F [Cannabis sativa] >KAF4372853.1 hypothetical protein F8388_004063 [Cannabis sativa] >KAF4400422.1 hypothetical protein G4B88_018764 [Cannabis sativa] >KAF4402702.1 hypothetical protein G4B88_012487 [Cannabis sativa])

HSP 1 Score: 177.2 bits (448), Expect = 6.2e-41
Identity = 85/87 (97.70%), Postives = 86/87 (98.85%), Query Frame = 0 

Query: 1  MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLG 60
          MSIPVNPKPFLNNLTGKTV VKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTG+LG
Sbjct: 1  MSIPVNPKPFLNNLTGKTVFVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGNLG 60

Query: 61 EILIRCNNVLYLRGVPEDEEIEDAERE 88
          EILIRCNNVLYLRGVPEDEEIEDAERE
Sbjct: 61 EILIRCNNVLYLRGVPEDEEIEDAERE 87

[Close]
BLAST of Lsi04G019810 vs. NCBI nr
Match: KAF4391041.1 (hypothetical protein F8388_024873 [Cannabis sativa])

HSP 1 Score: 177.2 bits (448), Expect = 6.2e-41
Identity = 85/87 (97.70%), Postives = 86/87 (98.85%), Query Frame = 0 

Query: 1   MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLG 60
           MSIPVNPKPFLNNLTGKTV VKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTG+LG
Sbjct: 685 MSIPVNPKPFLNNLTGKTVFVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGNLG 744

Query: 61  EILIRCNNVLYLRGVPEDEEIEDAERE 88
           EILIRCNNVLYLRGVPEDEEIEDAERE
Sbjct: 745 EILIRCNNVLYLRGVPEDEEIEDAERE 771

[Close]
BLAST of Lsi04G019810 vs. NCBI nr
Match: KAF4357808.1 (hypothetical protein F8388_024419 [Cannabis sativa])

HSP 1 Score: 177.2 bits (448), Expect = 6.2e-41
Identity = 85/87 (97.70%), Postives = 86/87 (98.85%), Query Frame = 0 

Query: 1   MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLG 60
           MSIPVNPKPFLNNLTGKTV VKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTG+LG
Sbjct: 80  MSIPVNPKPFLNNLTGKTVFVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGNLG 139

Query: 61  EILIRCNNVLYLRGVPEDEEIEDAERE 88
           EILIRCNNVLYLRGVPEDEEIEDAERE
Sbjct: 140 EILIRCNNVLYLRGVPEDEEIEDAERE 166

[Close]
BLAST of Lsi04G019810 vs. TAIR 10
Match: AT4G30220.1 (small nuclear ribonucleoprotein F )

HSP 1 Score: 164.5 bits (415), Expect = 3.9e-41
Identity = 75/86 (87.21%), Postives = 83/86 (96.51%), Query Frame = 0 

Query: 2  SIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGE 61
          +IPVNPKPFLNNLTGKTV+VKLKWGMEYKGFL SVDSYMNLQL NTEEYIDGQ TG+LGE
Sbjct: 3  TIPVNPKPFLNNLTGKTVIVKLKWGMEYKGFLASVDSYMNLQLGNTEEYIDGQLTGNLGE 62

Query: 62 ILIRCNNVLYLRGVPEDEEIEDAERE 88
          ILIRCNNVLY+RGVPEDEE+EDA+++
Sbjct: 63 ILIRCNNVLYVRGVPEDEELEDADQD 88

[Close]
BLAST of Lsi04G019810 vs. TAIR 10
Match: AT4G30220.2 (small nuclear ribonucleoprotein F )

HSP 1 Score: 164.5 bits (415), Expect = 3.9e-41
Identity = 75/86 (87.21%), Postives = 83/86 (96.51%), Query Frame = 0 

Query: 2  SIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGE 61
          +IPVNPKPFLNNLTGKTV+VKLKWGMEYKGFL SVDSYMNLQL NTEEYIDGQ TG+LGE
Sbjct: 11 TIPVNPKPFLNNLTGKTVIVKLKWGMEYKGFLASVDSYMNLQLGNTEEYIDGQLTGNLGE 70

Query: 62 ILIRCNNVLYLRGVPEDEEIEDAERE 88
          ILIRCNNVLY+RGVPEDEE+EDA+++
Sbjct: 71 ILIRCNNVLYVRGVPEDEELEDADQD 96

[Close]
BLAST of Lsi04G019810 vs. TAIR 10
Match: AT2G14285.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 114.4 bits (285), Expect = 4.6e-26
Identity = 52/61 (85.25%), Postives = 58/61 (95.08%), Query Frame = 0 

Query: 27 MEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGEILIRCNNVLYLRGVPEDEEIEDAER 86
          MEYKGFL SVDSYMNLQL NTEEYIDGQ TG+LGEILIRCNNVLY+RGVPEDEE+EDA++
Sbjct: 1  MEYKGFLASVDSYMNLQLGNTEEYIDGQLTGNLGEILIRCNNVLYVRGVPEDEELEDADQ 60

Query: 87 E 88
          +
Sbjct: 61 D 61

[Close]
BLAST of Lsi04G019810 vs. TAIR 10
Match: AT2G43810.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 74.7 bits (182), Expect = 4.1e-14
Identity = 31/66 (46.97%), Postives = 45/66 (68.18%), Query Frame = 0 

Query: 7  PKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGEILIRC 66
          P  FL ++ GK VVVKL  G++Y+G L  +D YMN+ +  TEEY++GQ   + G+  +R 
Sbjct: 15 PADFLKSIRGKPVVVKLNSGVDYRGILTCLDGYMNIAMEQTEEYVNGQLKNTYGDAFVRG 74

Query: 67 NNVLYL 73
          NNVLY+
Sbjct: 75 NNVLYI 80

[Close]
BLAST of Lsi04G019810 vs. TAIR 10
Match: AT2G43810.2 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 74.7 bits (182), Expect = 4.1e-14
Identity = 31/66 (46.97%), Postives = 45/66 (68.18%), Query Frame = 0 

Query: 7  PKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGEILIRC 66
          P  FL ++ GK VVVKL  G++Y+G L  +D YMN+ +  TEEY++GQ   + G+  +R 
Sbjct: 15 PADFLKSIRGKPVVVKLNSGVDYRGILTCLDGYMNIAMEQTEEYVNGQLKNTYGDAFVRG 74

Query: 67 NNVLYL 73
          NNVLY+
Sbjct: 75 NNVLYI 80

The following BLAST results are available for this feature:
BLAST of Lsi04G019810 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9SUM25.5e-4087.21Probable small nuclear ribonucleoprotein F OS=Arabidopsis thaliana OX=3702 GN=At... [more]
Q3T0Z81.7e-3380.00Small nuclear ribonucleoprotein F OS=Bos taurus OX=9913 GN=SNRPF PE=3 SV=2[more]
P623061.7e-3380.00Small nuclear ribonucleoprotein F OS=Homo sapiens OX=9606 GN=SNRPF PE=1 SV=1[more]
P623071.7e-3380.00Small nuclear ribonucleoprotein F OS=Mus musculus OX=10090 GN=Snrpf PE=1 SV=1[more]
P623211.7e-3380.00Small nuclear ribonucleoprotein F OS=Xenopus laevis OX=8355 GN=snrpf PE=3 SV=1[more]
BLAST of Lsi04G019810 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A1S3CKH58.0e-4298.85Sm protein F OS=Cucumis melo OX=3656 GN=LOC103501840 PE=3 SV=1[more]
A0A5D3DWN88.0e-4298.85Sm protein F OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384G00490 P... [more]
A0A6J1CSK01.0e-4198.85Sm protein F OS=Momordica charantia OX=3673 GN=LOC111013917 PE=3 SV=1[more]
A0A7J6FQ663.0e-4197.70Sm protein F OS=Cannabis sativa OX=3483 GN=F8388_004063 PE=3 SV=1[more]
A0A7J6EH773.0e-4197.70Sm protein F OS=Cannabis sativa OX=3483 GN=F8388_024419 PE=3 SV=1[more]
BLAST of Lsi04G019810 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004146017.21.6e-4198.85probable small nuclear ribonucleoprotein F isoform X1 [Cucumis sativus] >XP_0084... [more]
XP_022144158.12.1e-4198.85probable small nuclear ribonucleoprotein F [Momordica charantia][more]
XP_030480982.16.2e-4197.70probable small nuclear ribonucleoprotein F [Cannabis sativa] >XP_030485031.1 pro... [more]
KAF4391041.16.2e-4197.70hypothetical protein F8388_024873 [Cannabis sativa][more]
KAF4357808.16.2e-4197.70hypothetical protein F8388_024419 [Cannabis sativa][more]
BLAST of Lsi04G019810 vs. TAIR 10
Match NameE-valueIdentityDescription
AT4G30220.13.9e-4187.21small nuclear ribonucleoprotein F [more]
AT4G30220.23.9e-4187.21small nuclear ribonucleoprotein F [more]
AT2G14285.14.6e-2685.25Small nuclear ribonucleoprotein family protein [more]
AT2G43810.14.1e-1446.97Small nuclear ribonucleoprotein family protein [more]
AT2G43810.24.1e-1446.97Small nuclear ribonucleoprotein family protein [more]
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001163LSM domain, eukaryotic/archaea-typeSMARTSM00651Sm3coord: 9..74
e-value: 6.2E-25
score: 98.8
IPR001163LSM domain, eukaryotic/archaea-typePFAMPF01423LSMcoord: 10..72
e-value: 4.3E-22
score: 77.6
NoneNo IPR availableGENE3D2.30.30.100coord: 1..77
e-value: 3.8E-36
score: 124.7
NoneNo IPR availablePIRSFPIRSF006609snRNP_SmFcoord: 1..83
e-value: 1.9E-38
score: 128.2
NoneNo IPR availablePANTHERPTHR11021:SF0SMALL NUCLEAR RIBONUCLEOPROTEIN Fcoord: 2..83
IPR016487Sm-like protein Lsm6/SmFPANTHERPTHR11021SMALL NUCLEAR RIBONUCLEOPROTEIN F SNRNP-Fcoord: 2..83
IPR034100Small nuclear ribonucleoprotein FCDDcd01722Sm_Fcoord: 6..74
e-value: 3.21788E-49
score: 147.744
IPR010920LSM domain superfamilySUPERFAMILY50182Sm-like ribonucleoproteinscoord: 7..76

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi04G019810.1Lsi04G019810.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000387 spliceosomal snRNP assembly
biological_process GO:0000398 mRNA splicing, via spliceosome
cellular_component GO:0071013 catalytic step 2 spliceosome
cellular_component GO:0005685 U1 snRNP
cellular_component GO:0005681 spliceosomal complex
molecular_function GO:0003723 RNA binding