Lsi04G019210 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi04G019210
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	60S ribosomal protein L27
Location	chr04: 26406071 .. 26410891 (+)
RNA-Seq Expression	Lsi04G019210
Synteny	Lsi04G019210

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCCAAGTCCAATTAAATACAAAGTAGAATAAGCCCATTAACCATTGAATGCCCAGATCCAAATATAATTAGGGATTCGGTCGAACCGATTATAAATTAGCTGCTCTACAGTCTTCTTCTAGGGTTTCCGATCTCATCGTCGTCGACAGATCTAAACGGAGCATTTTTCGTAATCGAAGCTCCAATCGAGTTAAGAAATGGTGAAATTTATCAAGCCGAATAAGGCTGTTATTGTTCTTCAAGGCCGATTTGCCGGCCGGAAGGCTGTGATCGTCCGAAACTTCGATGAAGGAACCCGTGATCGACCCTACGGCCATTGTTTGGTTGCAGGGATGAAGAAGTACCCGAGCAAGGTCATTCGCAAAGATTCCACGAAGAAAACGGCGAAGAAATCGAGAGTGAAGGCGTTCATCAAGCTTGTGAACTACCAGCACCTCATGCCGACGAGATACACGCTCGACATCGATCTGAAGGACGTGGTTAATATGGATTGTTTACAGTCGAATGGTTCGAAGGTTGCGGCGTCGAAGGAGATCAAAAAGAGGTTTGAGGACAGGTTTAAGACTGGAAAGAACAGGTGGTTTTTTACAAAGCTTAGGTTCTGAGGAAATCATTTCAAGGTTTTGAGGTTTCTTTTTTACTTTGTTTCAAATTTTGAGAATCCATTTTTATAATTTTAAATCTCTATTGTCTAGTGCGTATGTTATTAAATTTTTGTTGATCTATTCCAATTATCTGAATCGTTCAATCTCTTTAAACGTCTCGTATTTGGATACAGTTTCAATTCCGATTGATGATGAAATCAATAAGAATTTTAGCTGATCAATTTTTTTTTTTCTGATCACATATACAAATACAACTGGGGAAATCCCTTCCCATTGTTCATGGATTTGATTCATTCAGTCTTTTTTTCATCACTTGCAGATTCCTTCTCCACTATTTTGCTTGTTTCAATGTGGTTACGGATCTGCATTCTCTTTGTTTTCTTCTGTGCTTCAGGAAGCAGTATTTTTTTTTTAAGAGAAAAATTAATGGAGGAAACCCAACCAAGCAAAATTAATATTTTCCATGTGGAAAACTGAAAACACACACCAAGAGGTGCGATAAATTTGACAGCAACACGAACAAGACAGTGGAAAAACAAGTCAAGTTTTAAAAATTAAGGATTGTTATTTTTATGCTTTCATTTCCTTAGATTTGTTATGTTTTTCAATTCTAGCCGTTTAATTTTTAAAAATTAATAAAGCTTACTTATAAGTCGCAGATTAAATAAATTTACCACAAGTTTTTTTTGTTATTCATTTTCTCACTTGATTTTTATAAAAGAAGTCTAAGTTTTAAAAATTAAAAAAAATAATAATAATTTTAAAGTTTTTGTTTTTAGAATATGTCCAATTTCTTTTTAACAAAAGAATAAAAAAGAATGAAAGAAAACAAGCATAAAAATTGTAAATAAAAATTTATTATCAAATGAGACTATAACATTAGTGAGACGACTTGAACTTCAAAATCTTATTTTTATCAAAATTTGCTTTGTTGCTTGACAATGCAAGGGTGTGTTTTGAAAAATATTTTCAAATGTTTAATTTAAAAATAAGTAATTCTTAAAAAAAAAATTGACTTGTTTAGCAACCTTTTAAAATAGATTTTGGAGTGTATTTTAAATCTTTTTAAATAAAAATATATTTTTTCAAAAACACTTTTTTTAAGTCAATCTAATCGGATCCTAAATATGTATTTTGTATTTTTATTTTTATTTTTATTTTGTCTGCTTTGAATAAGAGATGTACAACTAAAGGCTTATTCTTATTATATCGTTTTGGCTTATTATTATTATTATTTCCTTTTATTTTGTGGGGGTGAATTATAGGATTTTTGAAGAATGAGATTAATAAGAATTCAAAGGTTTATATATTTAGTAGAAACTTGAAATGTTGACAAAGGGAGTTTGAAGAGATGGACAATTAAAATTGAGACAATACACAAAGCTTACATATGACTTTTCTGTTTATCCTTCCTTATTCAGAAACAACAATTGGAGCAAACAGTAGAATACAACTCTCACCTTCACACATTCAGCTTTACATTCAATTTAAGCAAACTACTTCTGTTGAGATTTGAGTTCCTTCACCCTCTCTTCAGTATCCTTCAATGCCTTCCCATATATGCTTATTATCTGAAAATAATACCCATTTTAGAATTGTAACAACCAAGTTTCATTTTCATTAATATTCTGTCTACTATTTCAAAACGAGAGTGATTCTAAAACGGTTAAAATTACTTTTGTCATTTTGTAAATTCTTATGAAACATATTGTTAATCCTTCTAAACTAATTTTGATAATATAAAAATTGCGTTTAGAAGTGTAAAATTTAATATTGAATTAATTTTGAGTGATTAAAACTGTGCTGACGATTTTAATCACTCTCAAACATGAGGTAAGTGTTACCTCATCAATTTCTTCAGGTGTGACACAGAAAGGAGGACTCATCGTTATAGTATCTCCGGAAACGCGTACTAACATTCCGTACTTCTCACACATTTCACCAAAATATGCAGCTATCCCTGCACATTAAATGGTACACCTTGTTAAAACAAATCTAGAGACTATTCAGTTTTCATATTATAAGAAACCTTTGAAGTTTAAACACATCATTGCAATATTCATCAAGTTATTACTCAACATGTTGTATTTGAGGATTTGTAGAATGTAAAACTTTTGGTTGGTGATTAAAAAACGGGCTTTGTATTTATGAGATGTGAAGTCTTTATAATATTCAAAAGTTCTTTTAATGGTATGAGTTCAATCCACAGGAAAAACTCTTGACAACAGAAGCTAGACTATTACCCCATTCAGGAGGAAATGGATTGTCGGGTGATTTGTTGTCTGTGAATTCTGTTCCTGAAATCAATCCTATCCCCCTTATCTACAAAAACACCAAACATTTTGACACAAGCAAAATATCGAAGCACCGAGCGAGTATGAAACAATTACTCGAACTATACCTCTCCTATGATGGGACTGTTCTGGTAGGCTTTTATACCATCTTGAAACCTTGGAGAGAGGTTATTTACTTGCTCAAGAATGTTTCTCTCTCTACGAAAGGACATTGCACAATACCGAACATGAACACCGAAATGTTAAAGTTACAGATATATATGTCAAAAGCTATAAACAGTTAGTCATTCATAAGTTCATAACCATGGAGATCGACTAGCGAAATATTTATTCTTATGGTAGCAAGGTAGTCTTGAGGTTTGTCAATACTTGATAAACAAAAATTTTAAATGATTGAAAAGATCAAACATACTTGTATATCTTCAGTGTTTCAATTGCCACAGCACATGCCACGGGATGTCCAGAATATGTAAATCCATGGGCAAAATTACCTGAACAAAATGACAATTAGTTTGTCTATACGAGGATATTTTTGTTTGTGCCATAACTAACATACCAAGCTTATTGCTTTGAGAGTGTATGACATCTGAAATTTCAGGGCTGACAAGGACACCACCAATAGGAATATATGCAGAAGAAAGAGCCTGCAAAGTTCAGCGCCAAAAACAGGCATTATATGGAAATATCTTCTTCTCAGGCTATTCAAATTGACACAACTTCTCTTCACCTTAGCAACTGATACCAAGTCTGGCTTAATATTGTATTTATCGCATCCGAACATCGTCCCAAGCCTTCCAAAACCACAAATAACCTATGGCAGAGAAGAGGTTACAGGACACTAGGTAAGAGAAGTGAAAGGTATGGTGGCGAGTAATATTTGTATTACCTCATCTGCAATGAAAAGAACATCATATTTCTTCAGCACAGCTTGGATCTGCACATGAAATTGAAAATTAGTGAATAATTTTCAACTTTTTGTTCTTTTCTCTTATTATGAAGAATTGGAACTCTAGAAGCACTCATGAGTATGCATCTAAATAAGAAAGAAAGTCAGTACGAGCATTCGATGTTTCGAACTTGTAAAGAAAGTGGCCACTTACTTTATCAAAATAAGTTGCAGGAGGAAGTATCACACCACCTGATCCTATGACAGGTTCGGCAATAAAGGCAGCAATCTGAAAGAAACAAAGGTTAGAAATACTAAAGATCATTTGCATATGTCAAATATTTGAACATTCAAGTCAGGTTTTGTGACATTACAGTCTCAGGTCCTTCCTTCAGAATAAGATTCTCTAAATTTTTTGCTAATCTCGACGAGAACTCTTCCTCGGATTCACCTGGACATATTATTGAGACGTTTAGCATTATAAAGGTAATACTCTTAACTTTGTTGTCCTATAAGAATAGTCAAGGTGTACATAATAAAATAGAGTAGTTCAGTGACAACCAGGAAGATGATTGCGCCAGTAGTGAGGACAGTCAGTGTGCAGGACAAATGGAACAGGAAGATCAAATTTTTGATGCAAAGCTGGAATACTACAATAAAACGTCCCCAGTTATTAAAACTTTTCAAAATATTTGGAAAATTTCTTGACAAGATGTCTTTGATTACGTTCGTACCCGGTAAGACTGGCCGCTACAAGTGTGGAACCATGGTACCTGAGATAGCAAAGATAGCAAGACTTGGATGAGTAAAATGAGTGGAACATGTTTGAAAGGAGCATTGGATATTGAACTTACCCTTTCAAACGAGAGATGATTTTCTTCTTTTTTGGTCGCCCCAGTGCATTATTATAATACCAAACCAGTTTTACCTACATGAGTTAGAAAATGACGTTATTCATTTGTTATTACATCAAAGTAGCTTAGCAATTATGATCAATCACAATTACATTCAGTTCAACTGGACACTGAGGGAG

mRNA sequence

ATGGCCCAAGGATTCGGTCGAACCGATTATAAATTAGCTGCTCTACAGTCTTCTTCTAGGGTTTCCGATCTCATCGTCGTCGACAGATCTAAACGGAGCATTTTTCGTAATCGAAGCTCCAATCGACCGAATAAGGCTGTTATTGTTCTTCAAGGCCGATTTGCCGGCCGGAAGGCTGTGATCGTCCGAAACTTCGATGAAGGAACCCGTGATCGACCCTACGGCCATTGTTTGGTTGCAGGGATGAAGAAGTACCCGAGCAAGGTCATTCGCAAAGATTCCACGAAGAAAACGGCGAAGAAATCGAGAGTGAAGGCGTTCATCAAGCTTGTGAACTACCAGCACCTCATGCCGACGAGATACACGCTCGACATCGATCTGAAGGACGTGGTTAATATGGATTGTTTACAGTCGAATGGTTCGAAGGTTGCGGCGTCGAAGGAGATCAAAAAGAGGTTTGAGGACAGGTTTAAGACTGGAAAGAACAGTGCGTATATTCCTTCTCCACTATTTTGCTTGTTTCAATGTGGTTACGGATCTGCATTCTCTTTGTTTTCTTCTGTGCTTCAGGAAGCAGAAAAACTCTTGACAACAGAAGCTAGACTATTACCCCATTCAGGAGGAAATGGATTGTCGGGTGATTTGTTGTCTGTGAATTCTGTTCCTGAAATCAATCCTATCCCCCTTATCTACAAAAACACCAAACATTTTGACACAAGCAAAATATCGAAGCACCGAGCGAGTATGAAACAATTACTCGAACTATACCTCTCCTATGATGGGACTGTTCTGGTAGGCTTTTATACCATCTTGAAACCTTGGAGAGAGGTTATTTACTTGCTCAAGAATGTTTCTCTCTCTACGAAAGGACATTGCACAATACCGAACATGAACACCGAAATGGCTGACAAGGACACCACCAATAGGAATATATGCAGAAGAAAGAGCCTGCAAAGTTCAGCGCCAAAAACAGGCATTATATGGAAATATCTTCTTCTCAGGCTATTCAAATTGACACAACTTCTCTTCACCTTAGCAACTGATACCAAGTCTGGCTTAATATTGTATTTATCGCATCCGAACATCGTCCCAAGCCTTCCAAAACCACAAATAACCTATGGCAGAGAAGAGGTTACAGGACACTAGGTAAGAGAAGTGAAAGAATTGGAACTCTAGAAGCACTCATGAGTATGCATCTAAATAAGAAAGAAAGTCAGTACGAGCATTCGATGTTTCGAACTTGTAAAGAAAGTGGCCACTTACTTTATCAAAATAAGTTGCAGGAGGAAGTATCACACCACCTGATCCTATGACAGGTTCGGCAATAAAGGCAGCAATCTGAAAGAAACAAAGTCTCAGGTCCTTCCTTCAGAATAAGATTCTCTAAATTTTTTGCTAATCTCGACGAGAACTCTTCCTCGGATTCACCTGGACATATTATTGAGACGTTTAGCATTATAAAGGAAGATGATTGCGCCAGTAGTGAGGACAGTCAGTGTGCAGGACAAATGGAACAGGAAGATCAAATTTTTGATGCAAAGCTGGAATACTACAATAAAACGTCCCCAGTTATTAAAACTTTTCAAAATATTTGGAAAATTTCTTGACAAGATGTCTTTGATTACGTTCGTACCCGGTAAGACTGGCCGCTACAAGTGTGGAACCATGGTACCTGAGATAGCAAAGATAGCAAGACTTGGATGAGTAAAATGAGTGGAACATGTTTGAAAGGAGCATTGGATATTGAACTTACCCTTTCAAACGAGAGATGATTTTCTTCTTTTTTGGTCGCCCCAGTGCATTATTATAATACCAAACCAGTTTTACCTACATGAGTTAGAAAATGACGTTATTCATTTGTTATTACATCAAAGTAGCTTAGCAATTATGATCAATCACAATTACATTCAGTTCAACTGGACACTGAGGGAG

Coding sequence (CDS)

ATGGCCCAAGGATTCGGTCGAACCGATTATAAATTAGCTGCTCTACAGTCTTCTTCTAGGGTTTCCGATCTCATCGTCGTCGACAGATCTAAACGGAGCATTTTTCGTAATCGAAGCTCCAATCGACCGAATAAGGCTGTTATTGTTCTTCAAGGCCGATTTGCCGGCCGGAAGGCTGTGATCGTCCGAAACTTCGATGAAGGAACCCGTGATCGACCCTACGGCCATTGTTTGGTTGCAGGGATGAAGAAGTACCCGAGCAAGGTCATTCGCAAAGATTCCACGAAGAAAACGGCGAAGAAATCGAGAGTGAAGGCGTTCATCAAGCTTGTGAACTACCAGCACCTCATGCCGACGAGATACACGCTCGACATCGATCTGAAGGACGTGGTTAATATGGATTGTTTACAGTCGAATGGTTCGAAGGTTGCGGCGTCGAAGGAGATCAAAAAGAGGTTTGAGGACAGGTTTAAGACTGGAAAGAACAGTGCGTATATTCCTTCTCCACTATTTTGCTTGTTTCAATGTGGTTACGGATCTGCATTCTCTTTGTTTTCTTCTGTGCTTCAGGAAGCAGAAAAACTCTTGACAACAGAAGCTAGACTATTACCCCATTCAGGAGGAAATGGATTGTCGGGTGATTTGTTGTCTGTGAATTCTGTTCCTGAAATCAATCCTATCCCCCTTATCTACAAAAACACCAAACATTTTGACACAAGCAAAATATCGAAGCACCGAGCGAGTATGAAACAATTACTCGAACTATACCTCTCCTATGATGGGACTGTTCTGGTAGGCTTTTATACCATCTTGAAACCTTGGAGAGAGGTTATTTACTTGCTCAAGAATGTTTCTCTCTCTACGAAAGGACATTGCACAATACCGAACATGAACACCGAAATGGCTGACAAGGACACCACCAATAGGAATATATGCAGAAGAAAGAGCCTGCAAAGTTCAGCGCCAAAAACAGGCATTATATGGAAATATCTTCTTCTCAGGCTATTCAAATTGACACAACTTCTCTTCACCTTAGCAACTGATACCAAGTCTGGCTTAATATTGTATTTATCGCATCCGAACATCGTCCCAAGCCTTCCAAAACCACAAATAACCTATGGCAGAGAAGAGGTTACAGGACACTAG

Protein sequence

MAQGFGRTDYKLAALQSSSRVSDLIVVDRSKRSIFRNRSSNRPNKAVIVLQGRFAGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKVIRKDSTKKTAKKSRVKAFIKLVNYQHLMPTRYTLDIDLKDVVNMDCLQSNGSKVAASKEIKKRFEDRFKTGKNSAYIPSPLFCLFQCGYGSAFSLFSSVLQEAEKLLTTEARLLPHSGGNGLSGDLLSVNSVPEINPIPLIYKNTKHFDTSKISKHRASMKQLLELYLSYDGTVLVGFYTILKPWREVIYLLKNVSLSTKGHCTIPNMNTEMADKDTTNRNICRRKSLQSSAPKTGIIWKYLLLRLFKLTQLLFTLATDTKSGLILYLSHPNIVPSLPKPQITYGREEVTGH

Homology

[Close]

BLAST of Lsi04G019210 vs. ExPASy Swiss-Prot
Match: P51419 (60S ribosomal protein L27-3 OS=Arabidopsis thaliana OX=3702 GN=RPL27C PE=2 SV=2)

HSP 1 Score: 196.1 bits (497), Expect = 7.5e-49
Identity = 93/121 (76.86%), Postives = 107/121 (88.43%), Query Frame = 0


Query: 42  RPNKAVIVLQGRFAGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKVIRKDSTKKTAKK 101
           + NKAVI+LQGR+AG+KAVI+++FD+G RDRPYGHCLVAG+KKYPSKVIRKDS KKTAKK
Sbjct: 6   KQNKAVILLQGRYAGKKAVIIKSFDDGNRDRPYGHCLVAGLKKYPSKVIRKDSAKKTAKK 65

Query: 102 SRVKAFIKLVNYQHLMPTRYTLDIDLKDVVNMDCLQSNGSKVAASKEIKKRFEDRFKTGK 161
           SRVK FIKLVNYQHLMPTRYTLD+DLK+V  +D LQS   KVAA KE K + E+RFKTGK
Sbjct: 66  SRVKCFIKLVNYQHLMPTRYTLDVDLKEVATLDALQSKDKKVAALKEAKAKLEERFKTGK 125

Query: 162 N 163
           N
Sbjct: 126 N 126

[Close]

BLAST of Lsi04G019210 vs. ExPASy Swiss-Prot
Match: Q05462 (60S ribosomal protein L27 OS=Pisum sativum OX=3888 GN=RPL27 PE=2 SV=1)

HSP 1 Score: 194.5 bits (493), Expect = 2.2e-48
Identity = 93/121 (76.86%), Postives = 107/121 (88.43%), Query Frame = 0


Query: 42  RPNKAVIVLQGRFAGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKVIRKDSTKKTAKK 101
           +PNKAVI+LQGR+AG+KAVIV+ FD+GTR++PYGHCLVAG+KK+PSKVI+KDS KKTAKK
Sbjct: 6   KPNKAVILLQGRYAGKKAVIVKTFDDGTREKPYGHCLVAGIKKFPSKVIKKDSAKKTAKK 65

Query: 102 SRVKAFIKLVNYQHLMPTRYTLDIDLKDVVNMDCLQSNGSKVAASKEIKKRFEDRFKTGK 161
           SRVKAF+KLVNYQHLMPTRYTLD+DLKD V  D LQS   KV A KE KK  E+RFKTGK
Sbjct: 66  SRVKAFVKLVNYQHLMPTRYTLDVDLKDAVVPDVLQSKDKKVTALKETKKSLEERFKTGK 125

Query: 162 N 163
           N
Sbjct: 126 N 126

[Close]

BLAST of Lsi04G019210 vs. ExPASy Swiss-Prot
Match: Q8LCL3 (60S ribosomal protein L27-2 OS=Arabidopsis thaliana OX=3702 GN=RPL27B PE=2 SV=2)

HSP 1 Score: 189.1 bits (479), Expect = 9.1e-47
Identity = 90/121 (74.38%), Postives = 105/121 (86.78%), Query Frame = 0


Query: 42  RPNKAVIVLQGRFAGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKVIRKDSTKKTAKK 101
           + NKAVI+LQGR+AG+KAVI+++FD+GT DR YGHCLVAG+KKYPSKVIRKDS KKTAKK
Sbjct: 6   KQNKAVILLQGRYAGKKAVIIKSFDDGTSDRRYGHCLVAGLKKYPSKVIRKDSAKKTAKK 65

Query: 102 SRVKAFIKLVNYQHLMPTRYTLDIDLKDVVNMDCLQSNGSKVAASKEIKKRFEDRFKTGK 161
           SRVK FIKLVNYQHLMPTRYTLD+DLK+V  +D L+S   KV A KE K + E+RFKTGK
Sbjct: 66  SRVKCFIKLVNYQHLMPTRYTLDVDLKEVATLDALKSKDKKVTALKEAKAKLEERFKTGK 125

Query: 162 N 163
           N
Sbjct: 126 N 126

[Close]

BLAST of Lsi04G019210 vs. ExPASy Swiss-Prot
Match: Q9SKX8 (60S ribosomal protein L27-1 OS=Arabidopsis thaliana OX=3702 GN=RPL27A PE=2 SV=1)

HSP 1 Score: 182.6 bits (462), Expect = 8.5e-45
Identity = 85/121 (70.25%), Postives = 104/121 (85.95%), Query Frame = 0


Query: 42  RPNKAVIVLQGRFAGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKVIRKDSTKKTAKK 101
           +P KAVI+LQGR+ G+KAVIV++FD+GT ++ YGHCLVAG+KKYPSKVIRKDS KKTAKK
Sbjct: 6   KPGKAVILLQGRYTGKKAVIVKSFDDGTVEKKYGHCLVAGLKKYPSKVIRKDSAKKTAKK 65

Query: 102 SRVKAFIKLVNYQHLMPTRYTLDIDLKDVVNMDCLQSNGSKVAASKEIKKRFEDRFKTGK 161
           SRVK F K++NYQH+MPTRYTLD+DLK+VV+ D + S   KV A KE K +FE+RFKTGK
Sbjct: 66  SRVKCFFKVINYQHVMPTRYTLDLDLKNVVSADAISSKDKKVTALKEAKAKFEERFKTGK 125

Query: 162 N 163
           N
Sbjct: 126 N 126

[Close]

BLAST of Lsi04G019210 vs. ExPASy Swiss-Prot
Match: P41101 (60S ribosomal protein L27 OS=Solanum tuberosum OX=4113 GN=RPL27 PE=2 SV=1)

HSP 1 Score: 177.9 bits (450), Expect = 2.1e-43
Identity = 91/125 (72.80%), Postives = 101/125 (80.80%), Query Frame = 0


Query: 42  RPNKAVIVLQGRFAGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKVIRKDSTKKTAKK 101
           +PNKAVI+LQG++AGRKAVIVR FDEGTRDRPYGHCLVAG+ +YP KVIRKDS KK  KK
Sbjct: 6   KPNKAVILLQGKYAGRKAVIVRAFDEGTRDRPYGHCLVAGISRYPKKVIRKDSAKKAGKK 65

Query: 102 SRVKAFIKLVNYQHLMPTRYTLDIDL----KDVVNMDCLQSNGSKVAASKEIKKRFEDRF 161
           SRVKAFIKLVNY H+MPTRYTLD DL    KDVVN D LQ+   KV A +  K R  +RF
Sbjct: 66  SRVKAFIKLVNYNHIMPTRYTLDEDLKDVVKDVVNADVLQARDKKVTA-RRTKARLAERF 125

Query: 162 KTGKN 163
           KTGKN
Sbjct: 126 KTGKN 129

[Close]

BLAST of Lsi04G019210 vs. ExPASy TrEMBL
Match: A0A6J1J143 (60S ribosomal protein L27 OS=Cucurbita maxima OX=3661 GN=LOC111480374 PE=3 SV=1)

HSP 1 Score: 231.9 bits (590), Expect = 4.5e-57
Identity = 113/121 (93.39%), Postives = 118/121 (97.52%), Query Frame = 0


Query: 42  RPNKAVIVLQGRFAGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKVIRKDSTKKTAKK 101
           +PNKAVIVLQGRFAGRKAVIVRNFD+GTRDRPYGHCLVAGMKKYPSKVIRKDSTKKTAKK
Sbjct: 6   KPNKAVIVLQGRFAGRKAVIVRNFDDGTRDRPYGHCLVAGMKKYPSKVIRKDSTKKTAKK 65

Query: 102 SRVKAFIKLVNYQHLMPTRYTLDIDLKDVVNMDCLQSNGSKVAASKEIKKRFEDRFKTGK 161
           SRVKAFIKLVNYQH+MPTRYTLD+DLKDVVN DCLQS GSKVAA+KEIKKR EDRFKTGK
Sbjct: 66  SRVKAFIKLVNYQHIMPTRYTLDVDLKDVVNADCLQSKGSKVAAAKEIKKRLEDRFKTGK 125

Query: 162 N 163
           N
Sbjct: 126 N 126

[Close]

BLAST of Lsi04G019210 vs. ExPASy TrEMBL
Match: A0A6J1FNC2 (60S ribosomal protein L27 OS=Cucurbita moschata OX=3662 GN=LOC111445816 PE=3 SV=1)

HSP 1 Score: 230.3 bits (586), Expect = 1.3e-56
Identity = 113/121 (93.39%), Postives = 118/121 (97.52%), Query Frame = 0


Query: 42  RPNKAVIVLQGRFAGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKVIRKDSTKKTAKK 101
           +PNKAVIVLQGRFAGRKAVIVRNFD+GTRDRPYGHCLVAGMKKYPSKVIRKDSTKKTAKK
Sbjct: 6   KPNKAVIVLQGRFAGRKAVIVRNFDDGTRDRPYGHCLVAGMKKYPSKVIRKDSTKKTAKK 65

Query: 102 SRVKAFIKLVNYQHLMPTRYTLDIDLKDVVNMDCLQSNGSKVAASKEIKKRFEDRFKTGK 161
           SRVKAFIKLVNYQH+MPTRYTLD+DLKDVVN+DCLQS  SKVAASKEIKKR EDRFKTGK
Sbjct: 66  SRVKAFIKLVNYQHIMPTRYTLDVDLKDVVNVDCLQSKVSKVAASKEIKKRLEDRFKTGK 125

Query: 162 N 163
           N
Sbjct: 126 N 126

[Close]

BLAST of Lsi04G019210 vs. ExPASy TrEMBL
Match: A0A5A7SSA5 (60S ribosomal protein L27 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384G003380 PE=3 SV=1)

HSP 1 Score: 226.9 bits (577), Expect = 1.5e-55
Identity = 112/121 (92.56%), Postives = 116/121 (95.87%), Query Frame = 0


Query: 42  RPNKAVIVLQGRFAGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKVIRKDSTKKTAKK 101
           +PNKAVIVLQGRFAGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKVIRKDS KKT KK
Sbjct: 6   KPNKAVIVLQGRFAGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKVIRKDSKKKTDKK 65

Query: 102 SRVKAFIKLVNYQHLMPTRYTLDIDLKDVVNMDCLQSNGSKVAASKEIKKRFEDRFKTGK 161
           SRVKAFIKLVNYQH+MPTRYTLD+DLKDVVN+DCLQS  SKVAASKEIKKR EDRFKTGK
Sbjct: 66  SRVKAFIKLVNYQHIMPTRYTLDVDLKDVVNVDCLQSKVSKVAASKEIKKRLEDRFKTGK 125

Query: 162 N 163
           N
Sbjct: 126 N 126

[Close]

BLAST of Lsi04G019210 vs. ExPASy TrEMBL
Match: A0A1S3CNL3 (60S ribosomal protein L27 OS=Cucumis melo OX=3656 GN=LOC103502503 PE=3 SV=1)

HSP 1 Score: 226.9 bits (577), Expect = 1.5e-55
Identity = 112/121 (92.56%), Postives = 116/121 (95.87%), Query Frame = 0


Query: 42  RPNKAVIVLQGRFAGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKVIRKDSTKKTAKK 101
           +PNKAVIVLQGRFAGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKVIRKDS KKT KK
Sbjct: 6   KPNKAVIVLQGRFAGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKVIRKDSKKKTDKK 65

Query: 102 SRVKAFIKLVNYQHLMPTRYTLDIDLKDVVNMDCLQSNGSKVAASKEIKKRFEDRFKTGK 161
           SRVKAFIKLVNYQH+MPTRYTLD+DLKDVVN+DCLQS  SKVAASKEIKKR EDRFKTGK
Sbjct: 66  SRVKAFIKLVNYQHIMPTRYTLDVDLKDVVNVDCLQSKVSKVAASKEIKKRLEDRFKTGK 125

Query: 162 N 163
           N
Sbjct: 126 N 126

[Close]

BLAST of Lsi04G019210 vs. ExPASy TrEMBL
Match: A0A6J1CPX4 (60S ribosomal protein L27 OS=Momordica charantia OX=3673 GN=LOC111013189 PE=3 SV=1)

HSP 1 Score: 225.7 bits (574), Expect = 3.2e-55
Identity = 108/121 (89.26%), Postives = 118/121 (97.52%), Query Frame = 0


Query: 42  RPNKAVIVLQGRFAGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKVIRKDSTKKTAKK 101
           +PNKAV+VLQGRFAGRKAVIVRNFD+GTRDRPYGHCLVAG+ KYPS+VIRKDSTKKTAKK
Sbjct: 6   KPNKAVVVLQGRFAGRKAVIVRNFDDGTRDRPYGHCLVAGISKYPSRVIRKDSTKKTAKK 65

Query: 102 SRVKAFIKLVNYQHLMPTRYTLDIDLKDVVNMDCLQSNGSKVAASKEIKKRFEDRFKTGK 161
           SRVKAFIKLVNYQHLMPTRYTLD+DLKDVVN+DCLQS G+KVAA+KEIKKR E+RFKTGK
Sbjct: 66  SRVKAFIKLVNYQHLMPTRYTLDVDLKDVVNVDCLQSKGTKVAAAKEIKKRMEERFKTGK 125

Query: 162 N 163
           N
Sbjct: 126 N 126

[Close]

BLAST of Lsi04G019210 vs. NCBI nr
Match: XP_038899503.1 (60S ribosomal protein L27-3-like [Benincasa hispida])

HSP 1 Score: 235.7 bits (600), Expect = 6.5e-58
Identity = 116/121 (95.87%), Postives = 120/121 (99.17%), Query Frame = 0


Query: 42  RPNKAVIVLQGRFAGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKVIRKDSTKKTAKK 101
           +PNKAVIVLQGRFAGRKAVIVRNFDEGTRDRPYG+CLVAGMKKYPSKVIRKDSTKKTAKK
Sbjct: 6   KPNKAVIVLQGRFAGRKAVIVRNFDEGTRDRPYGYCLVAGMKKYPSKVIRKDSTKKTAKK 65

Query: 102 SRVKAFIKLVNYQHLMPTRYTLDIDLKDVVNMDCLQSNGSKVAASKEIKKRFEDRFKTGK 161
           SRVKAFIKLVNYQHLMPTRYTLD+DLKDVVN+DCLQS GSKVAASKEIKKRFEDRFKTGK
Sbjct: 66  SRVKAFIKLVNYQHLMPTRYTLDVDLKDVVNVDCLQSKGSKVAASKEIKKRFEDRFKTGK 125

Query: 162 N 163
           N
Sbjct: 126 N 126

[Close]

BLAST of Lsi04G019210 vs. NCBI nr
Match: XP_022981139.1 (60S ribosomal protein L27-like [Cucurbita maxima])

HSP 1 Score: 231.9 bits (590), Expect = 9.4e-57
Identity = 113/121 (93.39%), Postives = 118/121 (97.52%), Query Frame = 0


Query: 42  RPNKAVIVLQGRFAGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKVIRKDSTKKTAKK 101
           +PNKAVIVLQGRFAGRKAVIVRNFD+GTRDRPYGHCLVAGMKKYPSKVIRKDSTKKTAKK
Sbjct: 6   KPNKAVIVLQGRFAGRKAVIVRNFDDGTRDRPYGHCLVAGMKKYPSKVIRKDSTKKTAKK 65

Query: 102 SRVKAFIKLVNYQHLMPTRYTLDIDLKDVVNMDCLQSNGSKVAASKEIKKRFEDRFKTGK 161
           SRVKAFIKLVNYQH+MPTRYTLD+DLKDVVN DCLQS GSKVAA+KEIKKR EDRFKTGK
Sbjct: 66  SRVKAFIKLVNYQHIMPTRYTLDVDLKDVVNADCLQSKGSKVAAAKEIKKRLEDRFKTGK 125

Query: 162 N 163
           N
Sbjct: 126 N 126

[Close]

BLAST of Lsi04G019210 vs. NCBI nr
Match: XP_022940098.1 (60S ribosomal protein L27-3-like [Cucurbita moschata])

HSP 1 Score: 230.3 bits (586), Expect = 2.7e-56
Identity = 113/121 (93.39%), Postives = 118/121 (97.52%), Query Frame = 0


Query: 42  RPNKAVIVLQGRFAGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKVIRKDSTKKTAKK 101
           +PNKAVIVLQGRFAGRKAVIVRNFD+GTRDRPYGHCLVAGMKKYPSKVIRKDSTKKTAKK
Sbjct: 6   KPNKAVIVLQGRFAGRKAVIVRNFDDGTRDRPYGHCLVAGMKKYPSKVIRKDSTKKTAKK 65

Query: 102 SRVKAFIKLVNYQHLMPTRYTLDIDLKDVVNMDCLQSNGSKVAASKEIKKRFEDRFKTGK 161
           SRVKAFIKLVNYQH+MPTRYTLD+DLKDVVN+DCLQS  SKVAASKEIKKR EDRFKTGK
Sbjct: 66  SRVKAFIKLVNYQHIMPTRYTLDVDLKDVVNVDCLQSKVSKVAASKEIKKRLEDRFKTGK 125

Query: 162 N 163
           N
Sbjct: 126 N 126

[Close]

BLAST of Lsi04G019210 vs. NCBI nr
Match: XP_023523697.1 (60S ribosomal protein L27-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 230.3 bits (586), Expect = 2.7e-56
Identity = 112/121 (92.56%), Postives = 117/121 (96.69%), Query Frame = 0


Query: 42  RPNKAVIVLQGRFAGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKVIRKDSTKKTAKK 101
           +PNKAVIVLQGRFAGRKAVIVRNFD+GTRDRPYGHCLVAGMKKYPSKVIRKDSTKKTAKK
Sbjct: 6   KPNKAVIVLQGRFAGRKAVIVRNFDDGTRDRPYGHCLVAGMKKYPSKVIRKDSTKKTAKK 65

Query: 102 SRVKAFIKLVNYQHLMPTRYTLDIDLKDVVNMDCLQSNGSKVAASKEIKKRFEDRFKTGK 161
           SRVKAFIKLVNYQH+MPTRYTLD+DLKDVVN DCLQS GSKV A+KEIKKR EDRFKTGK
Sbjct: 66  SRVKAFIKLVNYQHIMPTRYTLDVDLKDVVNADCLQSKGSKVVAAKEIKKRLEDRFKTGK 125

Query: 162 N 163
           N
Sbjct: 126 N 126

[Close]

BLAST of Lsi04G019210 vs. NCBI nr
Match: KAG6608000.1 (60S ribosomal protein L27-3, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 229.6 bits (584), Expect = 4.6e-56
Identity = 113/121 (93.39%), Postives = 117/121 (96.69%), Query Frame = 0


Query: 42  RPNKAVIVLQGRFAGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKVIRKDSTKKTAKK 101
           +PNKAVIVLQGRFAGRKAVIVRNFD+GTRDRPYGHCLVAGMKKYPSKVIRKDSTKKTAKK
Sbjct: 83  KPNKAVIVLQGRFAGRKAVIVRNFDDGTRDRPYGHCLVAGMKKYPSKVIRKDSTKKTAKK 142

Query: 102 SRVKAFIKLVNYQHLMPTRYTLDIDLKDVVNMDCLQSNGSKVAASKEIKKRFEDRFKTGK 161
           SRVKAFIKLVNYQH+MPTRYTLD+DLKDVVN DCLQS  SKVAASKEIKKR EDRFKTGK
Sbjct: 143 SRVKAFIKLVNYQHIMPTRYTLDVDLKDVVNADCLQSKVSKVAASKEIKKRLEDRFKTGK 202

Query: 162 N 163
           N
Sbjct: 203 N 203

[Close]

BLAST of Lsi04G019210 vs. TAIR 10
Match: AT4G15000.1 (Ribosomal L27e protein family )

HSP 1 Score: 196.1 bits (497), Expect = 5.3e-50
Identity = 93/121 (76.86%), Postives = 107/121 (88.43%), Query Frame = 0


Query: 42  RPNKAVIVLQGRFAGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKVIRKDSTKKTAKK 101
           + NKAVI+LQGR+AG+KAVI+++FD+G RDRPYGHCLVAG+KKYPSKVIRKDS KKTAKK
Sbjct: 6   KQNKAVILLQGRYAGKKAVIIKSFDDGNRDRPYGHCLVAGLKKYPSKVIRKDSAKKTAKK 65

Query: 102 SRVKAFIKLVNYQHLMPTRYTLDIDLKDVVNMDCLQSNGSKVAASKEIKKRFEDRFKTGK 161
           SRVK FIKLVNYQHLMPTRYTLD+DLK+V  +D LQS   KVAA KE K + E+RFKTGK
Sbjct: 66  SRVKCFIKLVNYQHLMPTRYTLDVDLKEVATLDALQSKDKKVAALKEAKAKLEERFKTGK 125

Query: 162 N 163
           N
Sbjct: 126 N 126

[Close]

BLAST of Lsi04G019210 vs. TAIR 10
Match: AT4G15000.2 (Ribosomal L27e protein family )

HSP 1 Score: 189.5 bits (480), Expect = 5.0e-48
Identity = 90/118 (76.27%), Postives = 104/118 (88.14%), Query Frame = 0


Query: 42  RPNKAVIVLQGRFAGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKVIRKDSTKKTAKK 101
           + NKAVI+LQGR+AG+KAVI+++FD+G RDRPYGHCLVAG+KKYPSKVIRKDS KKTAKK
Sbjct: 6   KQNKAVILLQGRYAGKKAVIIKSFDDGNRDRPYGHCLVAGLKKYPSKVIRKDSAKKTAKK 65

Query: 102 SRVKAFIKLVNYQHLMPTRYTLDIDLKDVVNMDCLQSNGSKVAASKEIKKRFEDRFKT 160
           SRVK FIKLVNYQHLMPTRYTLD+DLK+V  +D LQS   KVAA KE K + E+RFKT
Sbjct: 66  SRVKCFIKLVNYQHLMPTRYTLDVDLKEVATLDALQSKDKKVAALKEAKAKLEERFKT 123

[Close]

BLAST of Lsi04G019210 vs. TAIR 10
Match: AT3G22230.1 (Ribosomal L27e protein family )

HSP 1 Score: 189.1 bits (479), Expect = 6.5e-48
Identity = 90/121 (74.38%), Postives = 105/121 (86.78%), Query Frame = 0


Query: 42  RPNKAVIVLQGRFAGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKVIRKDSTKKTAKK 101
           + NKAVI+LQGR+AG+KAVI+++FD+GT DR YGHCLVAG+KKYPSKVIRKDS KKTAKK
Sbjct: 6   KQNKAVILLQGRYAGKKAVIIKSFDDGTSDRRYGHCLVAGLKKYPSKVIRKDSAKKTAKK 65

Query: 102 SRVKAFIKLVNYQHLMPTRYTLDIDLKDVVNMDCLQSNGSKVAASKEIKKRFEDRFKTGK 161
           SRVK FIKLVNYQHLMPTRYTLD+DLK+V  +D L+S   KV A KE K + E+RFKTGK
Sbjct: 66  SRVKCFIKLVNYQHLMPTRYTLDVDLKEVATLDALKSKDKKVTALKEAKAKLEERFKTGK 125

Query: 162 N 163
           N
Sbjct: 126 N 126

[Close]

BLAST of Lsi04G019210 vs. TAIR 10
Match: AT2G32220.1 (Ribosomal L27e protein family )

HSP 1 Score: 182.6 bits (462), Expect = 6.1e-46
Identity = 85/121 (70.25%), Postives = 104/121 (85.95%), Query Frame = 0


Query: 42  RPNKAVIVLQGRFAGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKVIRKDSTKKTAKK 101
           +P KAVI+LQGR+ G+KAVIV++FD+GT ++ YGHCLVAG+KKYPSKVIRKDS KKTAKK
Sbjct: 6   KPGKAVILLQGRYTGKKAVIVKSFDDGTVEKKYGHCLVAGLKKYPSKVIRKDSAKKTAKK 65

Query: 102 SRVKAFIKLVNYQHLMPTRYTLDIDLKDVVNMDCLQSNGSKVAASKEIKKRFEDRFKTGK 161
           SRVK F K++NYQH+MPTRYTLD+DLK+VV+ D + S   KV A KE K +FE+RFKTGK
Sbjct: 66  SRVKCFFKVINYQHVMPTRYTLDLDLKNVVSADAISSKDKKVTALKEAKAKFEERFKTGK 125

Query: 162 N 163
           N
Sbjct: 126 N 126

The following BLAST results are available for this feature:

BLAST of Lsi04G019210 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P51419	7.5e-49	76.86	60S ribosomal protein L27-3 OS=Arabidopsis thaliana OX=3702 GN=RPL27C PE=2 SV=2	[more]
Q05462	2.2e-48	76.86	60S ribosomal protein L27 OS=Pisum sativum OX=3888 GN=RPL27 PE=2 SV=1	[more]
Q8LCL3	9.1e-47	74.38	60S ribosomal protein L27-2 OS=Arabidopsis thaliana OX=3702 GN=RPL27B PE=2 SV=2	[more]
Q9SKX8	8.5e-45	70.25	60S ribosomal protein L27-1 OS=Arabidopsis thaliana OX=3702 GN=RPL27A PE=2 SV=1	[more]
P41101	2.1e-43	72.80	60S ribosomal protein L27 OS=Solanum tuberosum OX=4113 GN=RPL27 PE=2 SV=1	[more]

BLAST of Lsi04G019210 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1J143	4.5e-57	93.39	60S ribosomal protein L27 OS=Cucurbita maxima OX=3661 GN=LOC111480374 PE=3 SV=1	[more]
A0A6J1FNC2	1.3e-56	93.39	60S ribosomal protein L27 OS=Cucurbita moschata OX=3662 GN=LOC111445816 PE=3 SV=...	[more]
A0A5A7SSA5	1.5e-55	92.56	60S ribosomal protein L27 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A1S3CNL3	1.5e-55	92.56	60S ribosomal protein L27 OS=Cucumis melo OX=3656 GN=LOC103502503 PE=3 SV=1	[more]
A0A6J1CPX4	3.2e-55	89.26	60S ribosomal protein L27 OS=Momordica charantia OX=3673 GN=LOC111013189 PE=3 SV...	[more]

BLAST of Lsi04G019210 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038899503.1	6.5e-58	95.87	60S ribosomal protein L27-3-like [Benincasa hispida]	[more]
XP_022981139.1	9.4e-57	93.39	60S ribosomal protein L27-like [Cucurbita maxima]	[more]
XP_022940098.1	2.7e-56	93.39	60S ribosomal protein L27-3-like [Cucurbita moschata]	[more]
XP_023523697.1	2.7e-56	92.56	60S ribosomal protein L27-like [Cucurbita pepo subsp. pepo]	[more]
KAG6608000.1	4.6e-56	93.39	60S ribosomal protein L27-3, partial [Cucurbita argyrosperma subsp. sororia]	[more]

BLAST of Lsi04G019210 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G15000.1	5.3e-50	76.86	Ribosomal L27e protein family	[more]
AT4G15000.2	5.0e-48	76.27	Ribosomal L27e protein family	[more]
AT3G22230.1	6.5e-48	74.38	Ribosomal L27e protein family	[more]
AT2G32220.1	6.1e-46	70.25	Ribosomal L27e protein family	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001141	Ribosomal protein L27e	PFAM	PF01777	Ribosomal_L27e	coord: 88..163 e-value: 4.9E-25 score: 87.7
IPR001141	Ribosomal protein L27e	PANTHER	PTHR10497	60S RIBOSOMAL PROTEIN L27	coord: 42..166
IPR038655	Ribosomal protein L27e superfamily	GENE3D	2.30.30.770		coord: 40..171 e-value: 1.5E-49 score: 169.6
None	No IPR available	PANTHER	PTHR10497:SF16	60S RIBOSOMAL PROTEIN L27	coord: 42..166
IPR041991	Eukaryotic Ribosomal Protein L27, KOW domain	CDD	cd06090	KOW_RPL27	coord: 42..124 e-value: 5.6701E-46 score: 150.412
IPR008991	Translation protein SH3-like domain superfamily	SUPERFAMILY	50104	Translation proteins SH3-like domain	coord: 41..131

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi04G019210.1	Lsi04G019210.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0022625	cytosolic large ribosomal subunit
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0046983	protein dimerization activity
molecular_function	GO:0003735	structural constituent of ribosome