Lsi04G019200 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi04G019200
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	CYSTM domain-containing protein
Location	chr04: 26400561 .. 26402760 (+)
RNA-Seq Expression	Lsi04G019200
Synteny	Lsi04G019200

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTATTTTCGTAATTTAGAAAGGAAAAAAAACTAATATAATTACTTAGCTTCCTCTCTGTTGCTTGTGCATAGTGTAAAAAGCACCTACTCTCTCTCTCTGTCTTGATATTCTCTCTTCCTTTCACGCGGTTTCGCCGCCCTTGGTCGGCCCCTCTCCCACACCACTCTCTCCGCCGCCTCCAAATCTCTCCCCACATATTATAAATATATATCTACTCTTTCCTCAAATCATCAAACTTAAAGGAAGAAAAAAAAAAGGAATTATTATTTCTGATTTTCCTTTCCTCCTCTGTGAAGACTTGAAATTTTTGTTTTTATTTCATCTCTCTGATCTCTTGCAAACATGAGTTCCGCTCAGCCTGCAGGTGATTAATCGATTTGATTATATATTTATAATTTATTTGAGATTAATTCTATGCGATTGAATTTATTTATAATTTTTGTTTTATTAACTTTGGAATTTGTTTTATGGGTTTTTTTTGGGGGGGGGGGTTATGCGTAGGTGTTTATCCTCCACCCTCCACCGTGCCGACATCTTATGCAGCTCCACCGCCGGCGGGGTATCCGACGAGAGACGGCGGAGACTTCTCTCAACCCGCCCCTGTTCCGGCTGAAACCAAGTCTAGAGGCGATGGCTTTTGGAAAGGCTGGTAATTACTAATTATCAATTATATTATACTTTAAATTTGGACATTAAACTTCATGGTCAAGAAATTTAAAGGGGAAAAAAAGAAATTATATTTTTCTAAATATTGTCAAAATCATAATATTGTATGATAGAAAATTAATTCTCTGCTCCCCAACCCAATCAAGAGAAAATTAGCATTTTTCTAAGAAATTTTTGTGAAGGGAGTAGCGTTATATAAATAATTAATTGTTTTTATTTCTTTTTTTAATTAAACAGAATTGTATTAGCTTCATCCCATTCATCCCATTTTGTTTGGGCTGTTTTTTAAATATATAAAAATGAGCTAAATTATTTACAAATATAGAAAAATTTTACTATCTATTGATCGCGATAGAACTCTATCACTAGGTGATAGATAGTGAAGTTTTTCTATAGTTTGATATTTTTTTTTGTTTATAATAATTTTTCTTTTCTTTACTTAGTAAAAGAAATAAAAAAAAATTATTATAAACAGAAAAAATATCAAATTATTTATAAATATAGAAAAATTTTATTATTTATCGCTCAAGTTATAAAATTCTATCACAATCTATCGCTGATGTTAAAAAAAATTTATATTTATAAATAATTTGACTCATTTTCTATATTTAAAAACAACTCAAAATAAAAATAATTTATTTTTTAAAAAAACAAAATGTACCAAGTTTTTCTCTAATTTAATTGCACTCTCTTACTTCTTTTTTTTCATAATTAGTTGTTGTAGTTTTTCTAATAAAAAAATTGTTTTCAAATATAGGAAAATGAACCAACATATTTATAAATATAGTAAAATTTTATTAAATTTTGCTATATTTCTAAATATTTTTAACAGTCTTGTCATTTAAAATAATTTTTCTAAAAAAGCTATAGGATTTGTTTTGTTTTGTTTTGTTTTAATTTCATCTAAGTTTAGTATACAATAATTTTGAAAACGTTTCTAGAATATGAGTAACGGAAACTATTATCAAATATTTATGTAAACATTAAAAACAATAAAGTAGGTTACCAAACGGGGTATATATATATATATATATGTTTAAATAATTGAAATTACGTGTTTGCAGTTGTGCTGCGTTGTGTTGCTGCTGCGTGTTGGATGCATGCTTCTAATCACTAGAAGTTCAACCCAACAAATTCTTAGAGATGATCGATATATATATCAGCATATTTATTGTCATTTTAGTGTTTTAATTTTAATTTTTCCTTTTTTTTGTGAATTTTTGGATTAATTATGTGATGATGTTGTAATAATAAATTTGGGTGTTGAAAAATCATGCTGATGAAATCATATTGGACTTCTGTGATCATATTACATGCTCTGTTTTTTTTTTTAAATTAATTATAATTTTTCTTGTGTGGAGTAGTTTAGTTTGATTTGTTTAAATATCCTCATGACACGTGGCGAACCACACGTGTGCATGGAAGAAGATAACTGATAAGGATGAAAGAGAGAATTTATTTATTTATTTATTTATTTATTTATTTGTATTTTGCTTGCTTATTCAATTTGGTTACGCATATTATTATATTCCC

mRNA sequence

GTATTTTCGTAATTTAGAAAGGAAAAAAAACTAATATAATTACTTAGCTTCCTCTCTGTTGCTTGTGCATAGTGTAAAAAGCACCTACTCTCTCTCTCTGTCTTGATATTCTCTCTTCCTTTCACGCGGTTTCGCCGCCCTTGGTCGGCCCCTCTCCCACACCACTCTCTCCGCCGCCTCCAAATCTCTCCCCACATATTATAAATATATATCTACTCTTTCCTCAAATCATCAAACTTAAAGGAAGAAAAAAAAAAGGAATTATTATTTCTGATTTTCCTTTCCTCCTCTGTGAAGACTTGAAATTTTTGTTTTTATTTCATCTCTCTGATCTCTTGCAAACATGAGTTCCGCTCAGCCTGCAGGTGTTTATCCTCCACCCTCCACCGTGCCGACATCTTATGCAGCTCCACCGCCGGCGGGGTATCCGACGAGAGACGGCGGAGACTTCTCTCAACCCGCCCCTGTTCCGGCTGAAACCAAGTCTAGAGGCGATGGCTTTTGGAAAGGCTGTTGTGCTGCGTTGTGTTGCTGCTGCGTGTTGGATGCATGCTTCTAATCACTAGAAGTTCAACCCAACAAATTCTTAGAGATGATCGATATATATATCAGCATATTTATTGTCATTTTAGTGTTTTAATTTTAATTTTTCCTTTTTTTTGTGAATTTTTGGATTAATTATGTGATGATGTTGTAATAATAAATTTGGGTGTTGAAAAATCATGCTGATGAAATCATATTGGACTTCTGTGATCATATTACATGCTCTGTTTTTTTTTTTAAATTAATTATAATTTTTCTTGTGTGGAGTAGTTTAGTTTGATTTGTTTAAATATCCTCATGACACGTGGCGAACCACACGTGTGCATGGAAGAAGATAACTGATAAGGATGAAAGAGAGAATTTATTTATTTATTTATTTATTTATTTATTTGTATTTTGCTTGCTTATTCAATTTGGTTACGCATATTATTATATTCCC

Coding sequence (CDS)

ATGAGTTCCGCTCAGCCTGCAGGTGTTTATCCTCCACCCTCCACCGTGCCGACATCTTATGCAGCTCCACCGCCGGCGGGGTATCCGACGAGAGACGGCGGAGACTTCTCTCAACCCGCCCCTGTTCCGGCTGAAACCAAGTCTAGAGGCGATGGCTTTTGGAAAGGCTGTTGTGCTGCGTTGTGTTGCTGCTGCGTGTTGGATGCATGCTTCTAA

Protein sequence

MSSAQPAGVYPPPSTVPTSYAAPPPAGYPTRDGGDFSQPAPVPAETKSRGDGFWKGCCAALCCCCVLDACF

Homology

[Close]

BLAST of Lsi04G019200 vs. ExPASy TrEMBL
Match: A0A6J1CBQ4 (cysteine-rich and transmembrane domain-containing protein WIH2-like OS=Momordica charantia OX=3673 GN=LOC111009227 PE=3 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 2.0e-30
Identity = 66/71 (92.96%), Postives = 67/71 (94.37%), Query Frame = 0


Query: 1  MSSAQPAGVYPPPSTVPTSYAAPPPAGYPTRDGGDFSQPAPVPAETKSRGDGFWKGCCAA 60
          MSSAQPA VYPPPST P SYAAPPPAGYPTRDGGDFSQP PVPAETKSRGDGFWKGCCAA
Sbjct: 1  MSSAQPAAVYPPPSTAPASYAAPPPAGYPTRDGGDFSQPPPVPAETKSRGDGFWKGCCAA 60

Query: 61 LCCCCVLDACF 72
          +CCCCVLDACF
Sbjct: 61 ICCCCVLDACF 71

[Close]

BLAST of Lsi04G019200 vs. ExPASy TrEMBL
Match: A0A0A0L4C6 (CYSTM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G618410 PE=3 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 3.8e-26
Identity = 66/73 (90.41%), Postives = 68/73 (93.15%), Query Frame = 0


Query: 1  MSSAQPAGV-YPPP-STVPTSYAAPPPAGYPTRDGGDFSQPAPVPAETKSRGDGFWKGCC 60
          MSSAQPAGV YPPP STVPTSY+APPPAGYPTR+GGDFS   PVPAETKSRGDGFWKGCC
Sbjct: 1  MSSAQPAGVNYPPPSSTVPTSYSAPPPAGYPTREGGDFS--TPVPAETKSRGDGFWKGCC 60

Query: 61 AALCCCCVLDACF 72
          AALCCCCVLDACF
Sbjct: 61 AALCCCCVLDACF 71

[Close]

BLAST of Lsi04G019200 vs. ExPASy TrEMBL
Match: A0A7N2R3F7 (CYSTM domain-containing protein OS=Quercus lobata OX=97700 PE=3 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 2.3e-23
Identity = 55/71 (77.46%), Postives = 59/71 (83.10%), Query Frame = 0


Query: 1  MSSAQPAGVYPPPSTVPTSYAAPPPAGYPTRDGGDFSQPAPVPAETKSRGDGFWKGCCAA 60
          MSS++PA  YPPPSTVP  Y APPPAGYPT+DG  + Q  P P ETKSRGDGFWKGCCAA
Sbjct: 1  MSSSEPAVAYPPPSTVPAYYVAPPPAGYPTKDGSGYFQNPPPPVETKSRGDGFWKGCCAA 60

Query: 61 LCCCCVLDACF 72
          LCCCCVLDACF
Sbjct: 61 LCCCCVLDACF 71

[Close]

BLAST of Lsi04G019200 vs. ExPASy TrEMBL
Match: A0A7N2LG73 (CYSTM domain-containing protein OS=Quercus lobata OX=97700 PE=3 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 3.0e-23
Identity = 54/71 (76.06%), Postives = 59/71 (83.10%), Query Frame = 0


Query: 1  MSSAQPAGVYPPPSTVPTSYAAPPPAGYPTRDGGDFSQPAPVPAETKSRGDGFWKGCCAA 60
          MSS++PA  YPPPST P  Y APPPAGYPT+DG  +SQ  P P ETKSRGDGFWKGCCAA
Sbjct: 1  MSSSEPAVAYPPPSTAPAYYVAPPPAGYPTKDGSGYSQNPPPPVETKSRGDGFWKGCCAA 60

Query: 61 LCCCCVLDACF 72
          LCCCCV+DACF
Sbjct: 61 LCCCCVVDACF 71

[Close]

BLAST of Lsi04G019200 vs. ExPASy TrEMBL
Match: A0A7N2LJ98 (CYSTM domain-containing protein OS=Quercus lobata OX=97700 PE=3 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 2.6e-22
Identity = 53/71 (74.65%), Postives = 57/71 (80.28%), Query Frame = 0


Query: 1  MSSAQPAGVYPPPSTVPTSYAAPPPAGYPTRDGGDFSQPAPVPAETKSRGDGFWKGCCAA 60
          MSS++PA  YPPPST PT Y A PPAGYPT+DG  +SQ  P P ETKSRGDGFWKGCCAA
Sbjct: 1  MSSSEPAVAYPPPSTAPTYYVAAPPAGYPTKDGSGYSQNPPPPVETKSRGDGFWKGCCAA 60

Query: 61 LCCCCVLDACF 72
          LCCCC LD CF
Sbjct: 61 LCCCCALDVCF 71

[Close]

BLAST of Lsi04G019200 vs. NCBI nr
Match: KAG6591814.1 (hypothetical protein SDJN03_14160, partial [Cucurbita argyrosperma subsp. sororia] >KAG7024679.1 hypothetical protein SDJN02_13497 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 144.4 bits (363), Expect = 3.7e-31
Identity = 68/71 (95.77%), Postives = 69/71 (97.18%), Query Frame = 0


Query: 1  MSSAQPAGVYPPPSTVPTSYAAPPPAGYPTRDGGDFSQPAPVPAETKSRGDGFWKGCCAA 60
          MSS QPA VYPPPST+PTSYAAPPPAGYPTRDGGDFSQPAPVPAETKSRGDGFWKGCCAA
Sbjct: 1  MSSGQPAAVYPPPSTMPTSYAAPPPAGYPTRDGGDFSQPAPVPAETKSRGDGFWKGCCAA 60

Query: 61 LCCCCVLDACF 72
          LCCCCVLDACF
Sbjct: 61 LCCCCVLDACF 71

[Close]

BLAST of Lsi04G019200 vs. NCBI nr
Match: XP_022137938.1 (cysteine-rich and transmembrane domain-containing protein WIH2-like [Momordica charantia])

HSP 1 Score: 141.0 bits (354), Expect = 4.0e-30
Identity = 66/71 (92.96%), Postives = 67/71 (94.37%), Query Frame = 0


Query: 1  MSSAQPAGVYPPPSTVPTSYAAPPPAGYPTRDGGDFSQPAPVPAETKSRGDGFWKGCCAA 60
          MSSAQPA VYPPPST P SYAAPPPAGYPTRDGGDFSQP PVPAETKSRGDGFWKGCCAA
Sbjct: 1  MSSAQPAAVYPPPSTAPASYAAPPPAGYPTRDGGDFSQPPPVPAETKSRGDGFWKGCCAA 60

Query: 61 LCCCCVLDACF 72
          +CCCCVLDACF
Sbjct: 61 ICCCCVLDACF 71

[Close]

BLAST of Lsi04G019200 vs. NCBI nr
Match: XP_031739667.1 (cysteine-rich and transmembrane domain-containing protein WIH1-like [Cucumis sativus] >KGN54976.1 hypothetical protein Csa_012002 [Cucumis sativus])

HSP 1 Score: 126.7 bits (317), Expect = 7.9e-26
Identity = 66/73 (90.41%), Postives = 68/73 (93.15%), Query Frame = 0


Query: 1  MSSAQPAGV-YPPP-STVPTSYAAPPPAGYPTRDGGDFSQPAPVPAETKSRGDGFWKGCC 60
          MSSAQPAGV YPPP STVPTSY+APPPAGYPTR+GGDFS   PVPAETKSRGDGFWKGCC
Sbjct: 1  MSSAQPAGVNYPPPSSTVPTSYSAPPPAGYPTREGGDFS--TPVPAETKSRGDGFWKGCC 60

Query: 61 AALCCCCVLDACF 72
          AALCCCCVLDACF
Sbjct: 61 AALCCCCVLDACF 71

[Close]

BLAST of Lsi04G019200 vs. NCBI nr
Match: KAF3972548.1 (hypothetical protein CMV_003960 [Castanea mollissima])

HSP 1 Score: 118.2 bits (295), Expect = 2.8e-23
Identity = 55/71 (77.46%), Postives = 59/71 (83.10%), Query Frame = 0


Query: 1  MSSAQPAGVYPPPSTVPTSYAAPPPAGYPTRDGGDFSQPAPVPAETKSRGDGFWKGCCAA 60
          MSS++PA  YPPPST P  Y APPPAGYPT+DG  +SQ  P P ETKSRGDGFWKGCCAA
Sbjct: 1  MSSSEPAVAYPPPSTAPAYYVAPPPAGYPTKDGSGYSQNPPPPVETKSRGDGFWKGCCAA 60

Query: 61 LCCCCVLDACF 72
          LCCCCVLDACF
Sbjct: 61 LCCCCVLDACF 71

[Close]

BLAST of Lsi04G019200 vs. NCBI nr
Match: KAF3953656.1 (hypothetical protein CMV_020922 [Castanea mollissima])

HSP 1 Score: 116.7 bits (291), Expect = 8.2e-23
Identity = 54/71 (76.06%), Postives = 59/71 (83.10%), Query Frame = 0


Query: 1  MSSAQPAGVYPPPSTVPTSYAAPPPAGYPTRDGGDFSQPAPVPAETKSRGDGFWKGCCAA 60
          MSS++PA  YPPPST P  Y APPPAGYPT+DG  +SQ  P P ETKSRG+GFWKGCCAA
Sbjct: 1  MSSSEPAVAYPPPSTAPAYYVAPPPAGYPTKDGSGYSQNPPPPVETKSRGEGFWKGCCAA 60

Query: 61 LCCCCVLDACF 72
          LCCCCVLDACF
Sbjct: 61 LCCCCVLDACF 71

[Close]

BLAST of Lsi04G019200 vs. TAIR 10
Match: AT3G22240.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G22235.2); Has 177 Blast hits to 177 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 177; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 78.2 bits (191), Expect = 3.0e-15
Identity = 41/65 (63.08%), Postives = 44/65 (67.69%), Query Frame = 0


Query: 9  VYPPPSTVPTSYAAPPPAGYPTRDG--GDFSQPAPVPAETKSRGDGFWKGCCAALCCCCV 68
          V  P  T    Y +PPP GYPTRD   GD   P     ETKS+GDGFWKGCCAA+CCCCV
Sbjct: 11 VEKPSQTSSGPYTSPPPIGYPTRDAMVGD---PPAAAVETKSKGDGFWKGCCAAICCCCV 70

Query: 69 LDACF 72
          LDACF
Sbjct: 71 LDACF 72

[Close]

BLAST of Lsi04G019200 vs. TAIR 10
Match: AT2G32190.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G32210.1); Has 218 Blast hits to 218 proteins in 24 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 16; Plants - 202; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 75.1 bits (183), Expect = 2.5e-14
Identity = 40/70 (57.14%), Postives = 43/70 (61.43%), Query Frame = 0


Query: 2  SSAQPAGVYPPPSTVPTSYAAPPPAGYPTRDGGDFSQPAPVPAETKSRGDGFWKGCCAAL 61
          S  Q +G YP P      Y  PPP GYPT    D S     P ETKS+GDGF KGC AA+
Sbjct: 5  SQNQSSGAYPTPPVSTGPYMTPPPLGYPT---SDISHATVAPVETKSKGDGFLKGCLAAM 64

Query: 62 CCCCVLDACF 72
          CCCCVLDACF
Sbjct: 65 CCCCVLDACF 71

[Close]

BLAST of Lsi04G019200 vs. TAIR 10
Match: AT2G32210.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G32190.1); Has 214 Blast hits to 214 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 10; Plants - 203; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 73.2 bits (178), Expect = 9.7e-14
Identity = 40/70 (57.14%), Postives = 43/70 (61.43%), Query Frame = 0


Query: 2  SSAQPAGVYPPPSTVPTSYAAPPPAGYPTRDGGDFSQPAPVPAETKSRGDGFWKGCCAAL 61
          S  Q +G YP P      Y APPP GYPT    D S       ETKS+GDGF KGC AA+
Sbjct: 5  SQNQSSGAYPTPPVSTGPYVAPPPLGYPT---NDTSHATVATVETKSKGDGFLKGCLAAM 64

Query: 62 CCCCVLDACF 72
          CCCCVLDACF
Sbjct: 65 CCCCVLDACF 71

[Close]

BLAST of Lsi04G019200 vs. TAIR 10
Match: AT1G05340.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 7 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G32210.1); Has 189 Blast hits to 189 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 21; Plants - 168; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 62.8 bits (151), Expect = 1.3e-10
Identity = 37/67 (55.22%), Postives = 42/67 (62.69%), Query Frame = 0


Query: 5  QPAGVYPPPSTVPTSYAAPPPAGYPTRDGGDFSQPAPVPAETKSRGDGFWKGCCAALCCC 64
          Q AG  PPP  + T  + PPP GYPT      S  A    ETKS+GDGF+KGC AA+CCC
Sbjct: 8  QSAGANPPP-PMSTCTSPPPPIGYPTNQPSHGS-VAQGKVETKSKGDGFFKGCLAAMCCC 67

Query: 65 CVLDACF 72
          C LD CF
Sbjct: 68 CALDICF 72

[Close]

BLAST of Lsi04G019200 vs. TAIR 10
Match: AT2G32200.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G32210.1); Has 131 Blast hits to 131 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 1; Plants - 130; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 58.9 bits (141), Expect = 1.9e-09
Identity = 37/72 (51.39%), Postives = 40/72 (55.56%), Query Frame = 0


Query: 2  SSAQPAGVYPPPSTVPTSYAAPPPAGYPTRDGGDFSQPAPVPAETKSRG---DGFWKGCC 61
          S  Q AG YP P      Y APPP GYPT    D +     P ETKS+G   DGF KGC 
Sbjct: 5  SQNQYAGAYPTPPVSTGPYVAPPPLGYPT---NDTTHATVAPVETKSKGEAADGFLKGCL 64

Query: 62 AALCCCCVLDAC 71
          A +  CCVLDAC
Sbjct: 65 ATMLACCVLDAC 73

The following BLAST results are available for this feature:

BLAST of Lsi04G019200 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi04G019200 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CBQ4	2.0e-30	92.96	cysteine-rich and transmembrane domain-containing protein WIH2-like OS=Momordica...	[more]
A0A0A0L4C6	3.8e-26	90.41	CYSTM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G618410 PE=3 ...	[more]
A0A7N2R3F7	2.3e-23	77.46	CYSTM domain-containing protein OS=Quercus lobata OX=97700 PE=3 SV=1	[more]
A0A7N2LG73	3.0e-23	76.06	CYSTM domain-containing protein OS=Quercus lobata OX=97700 PE=3 SV=1	[more]
A0A7N2LJ98	2.6e-22	74.65	CYSTM domain-containing protein OS=Quercus lobata OX=97700 PE=3 SV=1	[more]

BLAST of Lsi04G019200 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6591814.1	3.7e-31	95.77	hypothetical protein SDJN03_14160, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022137938.1	4.0e-30	92.96	cysteine-rich and transmembrane domain-containing protein WIH2-like [Momordica c...	[more]
XP_031739667.1	7.9e-26	90.41	cysteine-rich and transmembrane domain-containing protein WIH1-like [Cucumis sat...	[more]
KAF3972548.1	2.8e-23	77.46	hypothetical protein CMV_003960 [Castanea mollissima]	[more]
KAF3953656.1	8.2e-23	76.06	hypothetical protein CMV_020922 [Castanea mollissima]	[more]

BLAST of Lsi04G019200 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G22240.1	3.0e-15	63.08	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT2G32190.1	2.5e-14	57.14	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT2G32210.1	9.7e-14	57.14	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT1G05340.1	1.3e-10	55.22	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT2G32200.1	1.9e-09	51.39	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR028144	Cysteine-rich transmembrane CYSTM domain	PFAM	PF12734	CYSTM	coord: 23..71 e-value: 4.0E-12 score: 46.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..49
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 10..24
None	No IPR available	PANTHER	PTHR31568:SF60	CYSTEINE-RICH/TRANSMEMBRANE DOMAIN A-LIKE PROTEIN	coord: 4..71
IPR044850	Cysteine-rich and transmembrane domain-containing protein WIH1/2-like	PANTHER	PTHR31568	RCG49325, ISOFORM CRA_A	coord: 4..71

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi04G019200.1	Lsi04G019200.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005886	plasma membrane