Lsi04G018020 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi04G018020
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Small nuclear ribonucleoprotein Sm D3
Location	chr04: 25232725 .. 25235670 (+)
RNA-Seq Expression	Lsi04G018020
Synteny	Lsi04G018020

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTGCATTTTGCAAGTTCAAGGCTTAAAGAAGGTGAGGGGAGCGTTAGGGTTTTAGAGGGAGATTTGAGATTTGTGATTTGCAGAGAGTAGCCATGAGCAGGAGCTTGGGAATTCCAGTGAAGCTACTCCATGAGGCCGCGGGCCACGTTGTGTCGGTGGAGCTTAAAAGCGGTGAGCTTTACAGGGGAAGTATGATCGAGTGTGAGGATAACTGGAACTGCCAGCTCGAAAACATCACCTACACTGCTAAGGTTCCCCTCTTTTTTAGCTTTTGGTTGTTCATCATTAGATTATTCAATTTCTGTTTGTTAGTTGAATCTTTACGTTTTTTGGTTTTGGCTTTAGTTCATCTCGTTCAGTCTGCTTCTTTATCTCTACGGCTGCCTACTTTTTGAAATTTGTATGAAACCCTAATTTGGTGTAGTTTCCACGAATTTCTAGCTTCAAATGCTGTGATCCCTCTTTTTTTCTCTTTTCTTTGTCGTGTTTTTAATTTATACAAATTCTGCGTAGAAAATGAAATTAACATTGTTCGAACGCCAGAAAATTTCCGGGAATAGGAAACACTCTCCATATCGTTACTTTCAACATGTAAAAGGAACAATAATCGCATTTAAGCCCCACAGACCTGACATGTATGTTCCAACCCCAAAATGTAGCAATTGTCTAATGAGACTGAAAATCGGAGAAAACATGAAAAGAGGGCATTCACTGGTCAGCAATGGTGACCGCAACTTCATACCCAGGTTCAATGGTGATGGAGGTAAACTGGTTCACTACATCTGCAGAGCTGAATAAGTCAATAACTCAAATGTGGGTGCGAAGCTCAAATCTGTCACAGGTTGTAATGTGGGCATTTTTTACTGATTCCTTGACCCTCAATCTCTAGTCTTTGGCACCACGACTCAAGTCGGTGCAAACTTTCTCAAGGTTGTAACATTTTTGGAGGAGAGAATAATCCTGATCTTATGGATTTGCTTTTCCGTATCTTCCGACTTCTAGGCTTGGCTTCGTTGGTTTTGTTGCTGTGTACCATGCTTCTGGTTGTTCTGAATCTCAAAAGTGCATCTGGGACAGTATGTGAAAAGGAGATCTCTACGATTGAGTACCCAGCTTCATCTCTCTGGAAACCAAAATTTCATGATCTTGATTGCGAAATCAGGATTTATTAAATAAACTAGGGACTAATGTTAATTGTGCACGTCGATTCCTCCTGAGTGTGTCGTCTAATTGCAACTTTCTTGCTATGCAATTCACAACCACTAAATTGAATAGGAGAGATTGGCATAATCATAGATTCATATTTTGATTAATTGCAAAGAAAATGGTTTGTATAAAATTTTCTAATAGATTAGGTTTACTGATTTCCTTTGTTTAACCATCATGGGTTGGCCTAGTGGTAAAAAAGGAGACAAAGTCTCAATATATGGCTAAAAGAGGTCATGAGTTCAATCCATGGTAGTCACCTACCTAGGAATAAATTTCCTACGAGTTTTCTTGACACCCAAATGTTGTAGGGTCAGGCGGGTTGTCCCGTGAGTTTAGTCAAGGTGCGCGTAAGCTGGCCCGGATACTCACGGATATCAAAAAAAAAAAAAAATCTGTTGGTGTTTTGCTTATGTTATAGTTATTGCCCAATGTCTTGTTTTTTCCCTTTTGCTTGTGTGTATATAATTAAGAGTCATGTTCTTTGGGTTTACTTTATGGGTTTTCTTCTATAGGATGGGAAGGTCTCACAACTTGAGCATGTTTTCATCCGAGGCAGCAAAGTCAGGTATCTGTACCATCTCTTGTATTATAGATTATCCAATTACTTTCTTAGTTCTTATTCCAGGGTTTCTTTTAGGAATTGGTTGGCATGCTGACATCTGTTCATACATGACAGGTTTATGGTCATACCAGACATGCTAAAGAATGCTCCAATGTTCAAGCGTCTTGATGCTAGAATTAAAGTATTTCAACTTAATAAATCTTAATACCTATGAGTTTTAATTCGGATGGAATCCTTGTTTGTGTTCTCTTTTTCCTAACCCATGCTTTCTGGATCTTGAAGGGTAAGGGCGCCTCACTTGGTGTTGGCAGGGGCAGGGCTGTTGCTATGCGAGCTAAAGTAAGTCCTATGCATTTTAATTTTTGTACGGTGATTTATTTATTTCCTGGACACATTTTGAATCAGTACGAAGATCAACTTACATGCTGCGCTTTGAGTTTTTTTTCCACGCATGAGAGACAAGGATATGATCACTGCTTGTGTGTAAGAAATATAGGATTTACTTTAGTTGACAAGTTTCTTAATCATCAATTTGGAAGATATTAGGGATAGTGTAGGGGGAGTGATTGTAACTTGTGAAATTACATGTTAGTATTTATGTTTAAAAAATCAGGATGATAGATTACGATGGAAAACAACTAGAGTGTGTCACAAAATTTTTGTACATTTATAAATTTCTGAAAATTAACACGAATATCCTCTCTTTTCTAGGCCCAAGCTGCTGGCCGTGGAAGTGCACCTGGTCGGGGTGCTGCGCCATCTGGCCGAAGGTGATGAAACCATGAATATAGTTTGTTATATCCTTAGTTCAAGCCTAGAAAGTCATTGGAATATCGACCATCAAGTTTCATTAGTTCCGGTATTGACATCCTCAACATTGAACAAGGCTATGCATTGTTCATTTTGTTGAAAATGGGCGATTGACCATAATGTCATCAACTTGATAATCTACTTTTTCCTTGAGCCCATTTTATGTTGAGATCAAACTTTCCTTTACCCCCATTTACATCTTTGTTATGTATGTATCGAATGTTCTTTGCATCTTATCACCATAGAAGTATTGTCTTTGTGCCATTTATTCTACTTTAATCGTTGGCTGTTCAATTTACTTGGAGATATTACCTTCCTCAGAACAAATTCCCACTTTCACAATCATCACCATCATAGTTCGAAAA

mRNA sequence

TTGCATTTTGCAAGTTCAAGGCTTAAAGAAGGTGAGGGGAGCGTTAGGGTTTTAGAGGGAGATTTGAGATTTGTGATTTGCAGAGAGTAGCCATGAGCAGGAGCTTGGGAATTCCAGTGAAGCTACTCCATGAGGCCGCGGGCCACGTTGTGTCGGTGGAGCTTAAAAGCGGTGAGCTTTACAGGGGAAGTATGATCGAGTGTGAGGATAACTGGAACTGCCAGCTCGAAAACATCACCTACACTGCTAAGAAAATTTCCGGGAATAGGAAACACTCTCCATATCGTTACTTTCAACATGTAAAAGGAACAATAATCGCATTTAAGCCCCACAGACCTGACATGTATGTTCCAACCCCAAAATGTAGCAATTGTCTAATGAGACTGAAAATCGGAGAAAACATGAAAAGAGGGCATTCACTGGTCAGCAATGGTGACCGCAACTTCATACCCAGTCTTTGGCACCACGACTCAAGTCGGTGCAAACTTTCTCAAGGTTGTAACATTTTTGGAGGAGAGAATAATCCTGATCTTATGGATTTGCTTTTCCGTATCTTCCGACTTCTAGGCTTGGCTTCGTTGGTTTTGTTGCTGTGTACCATGCTTCTGGTTGTTCTGAATCTCAAAAGTGCATCTGGGACAGATGGGAAGGTCTCACAACTTGAGCATGTTTTCATCCGAGGCAGCAAAGTCAGGTTTATGGTCATACCAGACATGCTAAAGAATGCTCCAATGTTCAAGCGTCTTGATGCTAGAATTAAAGGTAAGGGCGCCTCACTTGGTGTTGGCAGGGGCAGGGCTGTTGCTATGCGAGCTAAAGCCCAAGCTGCTGGCCGTGGAAGTGCACCTGGTCGGGGTGCTGCGCCATCTGGCCGAAGGTGATGAAACCATGAATATAGTTTGTTATATCCTTAGTTCAAGCCTAGAAAGTCATTGGAATATCGACCATCAAGTTTCATTAGTTCCGGTATTGACATCCTCAACATTGAACAAGGCTATGCATTGTTCATTTTGTTGAAAATGGGCGATTGACCATAATGTCATCAACTTGATAATCTACTTTTTCCTTGAGCCCATTTTATGTTGAGATCAAACTTTCCTTTACCCCCATTTACATCTTTGTTATGTATGTATCGAATGTTCTTTGCATCTTATCACCATAGAAGTATTGTCTTTGTGCCATTTATTCTACTTTAATCGTTGGCTGTTCAATTTACTTGGAGATATTACCTTCCTCAGAACAAATTCCCACTTTCACAATCATCACCATCATAGTTCGAAAA

Coding sequence (CDS)

ATGAGCAGGAGCTTGGGAATTCCAGTGAAGCTACTCCATGAGGCCGCGGGCCACGTTGTGTCGGTGGAGCTTAAAAGCGGTGAGCTTTACAGGGGAAGTATGATCGAGTGTGAGGATAACTGGAACTGCCAGCTCGAAAACATCACCTACACTGCTAAGAAAATTTCCGGGAATAGGAAACACTCTCCATATCGTTACTTTCAACATGTAAAAGGAACAATAATCGCATTTAAGCCCCACAGACCTGACATGTATGTTCCAACCCCAAAATGTAGCAATTGTCTAATGAGACTGAAAATCGGAGAAAACATGAAAAGAGGGCATTCACTGGTCAGCAATGGTGACCGCAACTTCATACCCAGTCTTTGGCACCACGACTCAAGTCGGTGCAAACTTTCTCAAGGTTGTAACATTTTTGGAGGAGAGAATAATCCTGATCTTATGGATTTGCTTTTCCGTATCTTCCGACTTCTAGGCTTGGCTTCGTTGGTTTTGTTGCTGTGTACCATGCTTCTGGTTGTTCTGAATCTCAAAAGTGCATCTGGGACAGATGGGAAGGTCTCACAACTTGAGCATGTTTTCATCCGAGGCAGCAAAGTCAGGTTTATGGTCATACCAGACATGCTAAAGAATGCTCCAATGTTCAAGCGTCTTGATGCTAGAATTAAAGGTAAGGGCGCCTCACTTGGTGTTGGCAGGGGCAGGGCTGTTGCTATGCGAGCTAAAGCCCAAGCTGCTGGCCGTGGAAGTGCACCTGGTCGGGGTGCTGCGCCATCTGGCCGAAGGTGA

Protein sequence

MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKKISGNRKHSPYRYFQHVKGTIIAFKPHRPDMYVPTPKCSNCLMRLKIGENMKRGHSLVSNGDRNFIPSLWHHDSSRCKLSQGCNIFGGENNPDLMDLLFRIFRLLGLASLVLLLCTMLLVVLNLKSASGTDGKVSQLEHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGSAPGRGAAPSGRR

Homology

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BLAST of Lsi04G018020 vs. ExPASy Swiss-Prot
Match: Q9LM92 (Small nuclear ribonucleoprotein SmD3b OS=Arabidopsis thaliana OX=3702 GN=SMD3B PE=2 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 2.9e-36
Identity = 112/263 (42.59%), Postives = 120/263 (45.63%), Query Frame = 0


Query: 1   MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKKISGNRK 60
           MSRSLGIPVKLLHEA+GH+V+VELKSGELYRGSMIECEDNWNCQLE+ITYTAK       
Sbjct: 1   MSRSLGIPVKLLHEASGHIVTVELKSGELYRGSMIECEDNWNCQLEDITYTAK------- 60

Query: 61  HSPYRYFQHVKGTIIAFKPHRPDMYVPTPKCSNCLMRLKIGENMKRGHSLVSNGDRNFIP 120
                                                                       
Sbjct: 61  ------------------------------------------------------------ 120

Query: 121 SLWHHDSSRCKLSQGCNIFGGENNPDLMDLLFRIFRLLGLASLVLLLCTMLLVVLNLKSA 180
                                                                       
Sbjct: 121 ------------------------------------------------------------ 131

Query: 181 SGTDGKVSQLEHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMR 240
              DGKVSQLEHVFIRGSKVRFMVIPD+LK+APMFKRLDARIKGK +SLGVGRGR  AMR
Sbjct: 181 ---DGKVSQLEHVFIRGSKVRFMVIPDILKHAPMFKRLDARIKGKSSSLGVGRGRG-AMR 131

Query: 241 AK-AQAAGRGSAPGRGAAPSGRR 263
            K A   GRG+  GRGA P  RR
Sbjct: 241 GKPAAGPGRGTG-GRGAVPPVRR 131

[Close]

BLAST of Lsi04G018020 vs. ExPASy Swiss-Prot
Match: Q9S7E6 (Small nuclear ribonucleoprotein SmD3a OS=Arabidopsis thaliana OX=3702 GN=SMD3A PE=2 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 1.1e-35
Identity = 109/262 (41.60%), Postives = 115/262 (43.89%), Query Frame = 0


Query: 1   MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKKISGNRK 60
           MSRSLGIPVKLLHE++GH+VSVE+KSGELYRGSMIECEDNWNCQLENITYTAK       
Sbjct: 1   MSRSLGIPVKLLHESSGHIVSVEMKSGELYRGSMIECEDNWNCQLENITYTAK------- 60

Query: 61  HSPYRYFQHVKGTIIAFKPHRPDMYVPTPKCSNCLMRLKIGENMKRGHSLVSNGDRNFIP 120
                                                                       
Sbjct: 61  ------------------------------------------------------------ 120

Query: 121 SLWHHDSSRCKLSQGCNIFGGENNPDLMDLLFRIFRLLGLASLVLLLCTMLLVVLNLKSA 180
                                                                       
Sbjct: 121 ------------------------------------------------------------ 128

Query: 181 SGTDGKVSQLEHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMR 240
              DGKVSQLEHVFIRGS VRF+VIPDMLKNAPMFK  D R KGK ASLGVGRGR  AMR
Sbjct: 181 ---DGKVSQLEHVFIRGSLVRFLVIPDMLKNAPMFK--DVRGKGKSASLGVGRGRGAAMR 128

Query: 241 AKAQAAGRGSAPGRGAAPSGRR 263
           AK    GRG+  GRGA P  RR
Sbjct: 241 AK--GTGRGTGGGRGAVPPVRR 128

[Close]

BLAST of Lsi04G018020 vs. ExPASy Swiss-Prot
Match: P62318 (Small nuclear ribonucleoprotein Sm D3 OS=Homo sapiens OX=9606 GN=SNRPD3 PE=1 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 2.0e-16
Identity = 72/259 (27.80%), Postives = 94/259 (36.29%), Query Frame = 0


Query: 4   SLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKKISGNRKHSP 63
           S+G+P+K+LHEA GH+V+ E  +GE+YRG +IE EDN NCQ+ NIT T            
Sbjct: 2   SIGVPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVT------------ 61

Query: 64  YRYFQHVKGTIIAFKPHRPDMYVPTPKCSNCLMRLKIGENMKRGHSLVSNGDRNFIPSLW 123
           YR                                                          
Sbjct: 62  YR---------------------------------------------------------- 121

Query: 124 HHDSSRCKLSQGCNIFGGENNPDLMDLLFRIFRLLGLASLVLLLCTMLLVVLNLKSASGT 183
                                                                       
Sbjct: 122 ------------------------------------------------------------ 126

Query: 184 DGKVSQLEHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKA 243
           DG+V+QLE V+IRGSK+RF+++PDMLKNAPM K +    K K    G GRG+A  ++A+ 
Sbjct: 182 DGRVAQLEQVYIRGSKIRFLILPDMLKNAPMLKSM----KNKNQGSGAGRGKAAILKAQV 126

Query: 244 QAAGRGSAPGRGAAPSGRR 263
            A GRG   GRG     RR
Sbjct: 242 AARGRGRGMGRGNIFQKRR 126

[Close]

BLAST of Lsi04G018020 vs. ExPASy Swiss-Prot
Match: P62320 (Small nuclear ribonucleoprotein Sm D3 OS=Mus musculus OX=10090 GN=Snrpd3 PE=1 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 2.0e-16
Identity = 72/259 (27.80%), Postives = 94/259 (36.29%), Query Frame = 0


Query: 4   SLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKKISGNRKHSP 63
           S+G+P+K+LHEA GH+V+ E  +GE+YRG +IE EDN NCQ+ NIT T            
Sbjct: 2   SIGVPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVT------------ 61

Query: 64  YRYFQHVKGTIIAFKPHRPDMYVPTPKCSNCLMRLKIGENMKRGHSLVSNGDRNFIPSLW 123
           YR                                                          
Sbjct: 62  YR---------------------------------------------------------- 121

Query: 124 HHDSSRCKLSQGCNIFGGENNPDLMDLLFRIFRLLGLASLVLLLCTMLLVVLNLKSASGT 183
                                                                       
Sbjct: 122 ------------------------------------------------------------ 126

Query: 184 DGKVSQLEHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKA 243
           DG+V+QLE V+IRGSK+RF+++PDMLKNAPM K +    K K    G GRG+A  ++A+ 
Sbjct: 182 DGRVAQLEQVYIRGSKIRFLILPDMLKNAPMLKSM----KNKNQGSGAGRGKAAILKAQV 126

Query: 244 QAAGRGSAPGRGAAPSGRR 263
            A GRG   GRG     RR
Sbjct: 242 AARGRGRGMGRGNIFQKRR 126

[Close]

BLAST of Lsi04G018020 vs. ExPASy Swiss-Prot
Match: P62323 (Small nuclear ribonucleoprotein Sm D3 OS=Xenopus laevis OX=8355 GN=snrpd3 PE=2 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 2.0e-16
Identity = 72/259 (27.80%), Postives = 94/259 (36.29%), Query Frame = 0


Query: 4   SLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKKISGNRKHSP 63
           S+G+P+K+LHEA GH+V+ E  +GE+YRG +IE EDN NCQ+ NIT T            
Sbjct: 2   SIGVPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVT------------ 61

Query: 64  YRYFQHVKGTIIAFKPHRPDMYVPTPKCSNCLMRLKIGENMKRGHSLVSNGDRNFIPSLW 123
           YR                                                          
Sbjct: 62  YR---------------------------------------------------------- 121

Query: 124 HHDSSRCKLSQGCNIFGGENNPDLMDLLFRIFRLLGLASLVLLLCTMLLVVLNLKSASGT 183
                                                                       
Sbjct: 122 ------------------------------------------------------------ 126

Query: 184 DGKVSQLEHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKA 243
           DG+V+QLE V+IRGSK+RF+++PDMLKNAPM K +    K K    G GRG+A  ++A+ 
Sbjct: 182 DGRVAQLEQVYIRGSKIRFLILPDMLKNAPMLKSM----KNKNQGSGAGRGKAAILKAQV 126

Query: 244 QAAGRGSAPGRGAAPSGRR 263
            A GRG   GRG     RR
Sbjct: 242 AARGRGRGMGRGNIFQKRR 126

[Close]

BLAST of Lsi04G018020 vs. ExPASy TrEMBL
Match: A0A5D3D8Q1 (Small nuclear ribonucleoprotein Sm D3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold134G00680 PE=3 SV=1)

HSP 1 Score: 199.9 bits (507), Expect = 1.3e-47
Identity = 131/262 (50.00%), Postives = 131/262 (50.00%), Query Frame = 0


Query: 1   MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKKISGNRK 60
           MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAK       
Sbjct: 44  MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAK------- 103

Query: 61  HSPYRYFQHVKGTIIAFKPHRPDMYVPTPKCSNCLMRLKIGENMKRGHSLVSNGDRNFIP 120
                                                                       
Sbjct: 104 ------------------------------------------------------------ 163

Query: 121 SLWHHDSSRCKLSQGCNIFGGENNPDLMDLLFRIFRLLGLASLVLLLCTMLLVVLNLKSA 180
                                                                       
Sbjct: 164 ------------------------------------------------------------ 175

Query: 181 SGTDGKVSQLEHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMR 240
              DGKVSQLEHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMR
Sbjct: 224 ---DGKVSQLEHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMR 175

Query: 241 AKAQAAGRGSAPGRGAAPSGRR 263
           AKAQAAGRGSAPGRGA PSGRR
Sbjct: 284 AKAQAAGRGSAPGRGAPPSGRR 175

[Close]

BLAST of Lsi04G018020 vs. ExPASy TrEMBL
Match: A0A1S3BVV0 (Small nuclear ribonucleoprotein Sm D3 OS=Cucumis melo OX=3656 GN=LOC103493808 PE=3 SV=1)

HSP 1 Score: 199.9 bits (507), Expect = 1.3e-47
Identity = 131/262 (50.00%), Postives = 131/262 (50.00%), Query Frame = 0


Query: 1   MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKKISGNRK 60
           MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAK       
Sbjct: 1   MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAK------- 60

Query: 61  HSPYRYFQHVKGTIIAFKPHRPDMYVPTPKCSNCLMRLKIGENMKRGHSLVSNGDRNFIP 120
                                                                       
Sbjct: 61  ------------------------------------------------------------ 120

Query: 121 SLWHHDSSRCKLSQGCNIFGGENNPDLMDLLFRIFRLLGLASLVLLLCTMLLVVLNLKSA 180
                                                                       
Sbjct: 121 ------------------------------------------------------------ 132

Query: 181 SGTDGKVSQLEHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMR 240
              DGKVSQLEHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMR
Sbjct: 181 ---DGKVSQLEHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMR 132

Query: 241 AKAQAAGRGSAPGRGAAPSGRR 263
           AKAQAAGRGSAPGRGA PSGRR
Sbjct: 241 AKAQAAGRGSAPGRGAPPSGRR 132

[Close]

BLAST of Lsi04G018020 vs. ExPASy TrEMBL
Match: A0A4S8IYM3 (Small nuclear ribonucleoprotein Sm D3 OS=Musa balbisiana OX=52838 GN=C4D60_Mb10t21220 PE=3 SV=1)

HSP 1 Score: 198.7 bits (504), Expect = 2.9e-47
Identity = 137/263 (52.09%), Postives = 153/263 (58.17%), Query Frame = 0


Query: 1   MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKKISGNRK 60
           MSRSLGIPVKLLHEAAGHVV+VELKSGELYRGSMIECEDNWNCQLENITYTAK +     
Sbjct: 1   MSRSLGIPVKLLHEAAGHVVTVELKSGELYRGSMIECEDNWNCQLENITYTAKVL----- 60

Query: 61  HSPYRYFQHVKGTIIAFKPHRPDMYVPTPKCSNCLMRLKIGENMKRGHSLVSNGDRNFIP 120
                 F +    ++ F                                          P
Sbjct: 61  ----LLFVYRSDEVLGF---------------------------------------GLPP 120

Query: 121 SLWHHDSSRCKLSQGCNIFGGENNPDLMDLLFRIFRLLGLASLVLLLCTMLLVVLNLKSA 180
           S             G  I   + +P  + LL           LV +   + L +  L S+
Sbjct: 121 SF------------GAKI---KMHPPPIKLL-----------LVAITLGLFLFLSGLISS 180

Query: 181 SGTDGKVSQLEHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMR 240
           S  DGKVSQLEHVFIRGSKVRFMVIPDMLKNAPMFKRLDARI+GKG++LGVGRGRAVAMR
Sbjct: 181 S-QDGKVSQLEHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIRGKGSALGVGRGRAVAMR 188

Query: 241 AKAQAAGRGSAP-GRGAAPSGRR 263
           A+AQAAGRG AP GRG  P  RR
Sbjct: 241 ARAQAAGRGGAPTGRGVVPPIRR 188

[Close]

BLAST of Lsi04G018020 vs. ExPASy TrEMBL
Match: A0A0A0L5W4 (Small nuclear ribonucleoprotein Sm D3 OS=Cucumis sativus OX=3659 GN=Csa_4G658560 PE=3 SV=1)

HSP 1 Score: 197.6 bits (501), Expect = 6.5e-47
Identity = 130/262 (49.62%), Postives = 130/262 (49.62%), Query Frame = 0


Query: 1   MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKKISGNRK 60
           MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAK       
Sbjct: 1   MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAK------- 60

Query: 61  HSPYRYFQHVKGTIIAFKPHRPDMYVPTPKCSNCLMRLKIGENMKRGHSLVSNGDRNFIP 120
                                                                       
Sbjct: 61  ------------------------------------------------------------ 120

Query: 121 SLWHHDSSRCKLSQGCNIFGGENNPDLMDLLFRIFRLLGLASLVLLLCTMLLVVLNLKSA 180
                                                                       
Sbjct: 121 ------------------------------------------------------------ 132

Query: 181 SGTDGKVSQLEHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMR 240
              DGKVSQLEHVFIRGSKV FMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMR
Sbjct: 181 ---DGKVSQLEHVFIRGSKVSFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMR 132

Query: 241 AKAQAAGRGSAPGRGAAPSGRR 263
           AKAQAAGRGSAPGRGA PSGRR
Sbjct: 241 AKAQAAGRGSAPGRGAPPSGRR 132

[Close]

BLAST of Lsi04G018020 vs. ExPASy TrEMBL
Match: A0A6J1DDX8 (Small nuclear ribonucleoprotein Sm D3 OS=Momordica charantia OX=3673 GN=LOC111019638 PE=3 SV=1)

HSP 1 Score: 194.5 bits (493), Expect = 5.5e-46
Identity = 129/262 (49.24%), Postives = 129/262 (49.24%), Query Frame = 0


Query: 1   MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKKISGNRK 60
           MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAK       
Sbjct: 1   MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAK------- 60

Query: 61  HSPYRYFQHVKGTIIAFKPHRPDMYVPTPKCSNCLMRLKIGENMKRGHSLVSNGDRNFIP 120
                                                                       
Sbjct: 61  ------------------------------------------------------------ 120

Query: 121 SLWHHDSSRCKLSQGCNIFGGENNPDLMDLLFRIFRLLGLASLVLLLCTMLLVVLNLKSA 180
                                                                       
Sbjct: 121 ------------------------------------------------------------ 132

Query: 181 SGTDGKVSQLEHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMR 240
              DGKVSQLEHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMR
Sbjct: 181 ---DGKVSQLEHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMR 132

Query: 241 AKAQAAGRGSAPGRGAAPSGRR 263
           AKAQAAGRGSA GRGA PS RR
Sbjct: 241 AKAQAAGRGSATGRGAMPSARR 132

[Close]

BLAST of Lsi04G018020 vs. NCBI nr
Match: KAF3629783.1 (Small nuclear ribonucleoprotein Sm D3 [Capsicum annuum])

HSP 1 Score: 213.8 bits (543), Expect = 1.8e-51
Identity = 134/268 (50.00%), Postives = 162/268 (60.45%), Query Frame = 0


Query: 1   MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKKISGNRK 60
           MSRSLGIPVKLLHEA GH+V+VE+KSGELYRGSM+ECEDNWNCQLE+ITYTAK       
Sbjct: 1   MSRSLGIPVKLLHEATGHIVTVEMKSGELYRGSMVECEDNWNCQLESITYTAK------V 60

Query: 61  HSPYRYFQHVKGTIIAFKPHRPDMY----VPTPKCSNCLMRLKIGENMKRGHSLVSNGDR 120
            +  +Y    KG ++ + P  P ++     P PK    +  L           + S    
Sbjct: 61  RTALKYVTRDKG-LLTYVPSIPSVFCQCGTPYPKLGRYIYPL-----------MDSTSSL 120

Query: 121 NFIP--SLWHHDSSRCKLSQGCNIFGGENNPDLMDLLFRIFRLLGLASLVLLLCTMLLVV 180
            F P   +      R K  +        NN +    + +     G              V
Sbjct: 121 KFAPPNGICLDSGLRAKPYEPSISNNSNNNNNTYKNIPQSGIWKG-------------QV 180

Query: 181 LNLKSASGTDGKVSQLEHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRG 240
             +++    DG+VSQLEHVFIRGSKVRFM+IPDMLKNAPMFKRL+ARIKGKG+SLGVGRG
Sbjct: 181 YAVRTTISQDGRVSQLEHVFIRGSKVRFMIIPDMLKNAPMFKRLEARIKGKGSSLGVGRG 237

Query: 241 RAVAMRAKAQAAGRGSAPGRGAAPSGRR 263
           RA+AMRAKAQAAGRG+APGRG  P  RR
Sbjct: 241 RAMAMRAKAQAAGRGAAPGRGVVPPVRR 237

[Close]

BLAST of Lsi04G018020 vs. NCBI nr
Match: XP_038896140.1 (small nuclear ribonucleoprotein SmD3a-like [Benincasa hispida])

HSP 1 Score: 201.8 bits (512), Expect = 7.1e-48
Identity = 132/262 (50.38%), Postives = 132/262 (50.38%), Query Frame = 0


Query: 1   MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKKISGNRK 60
           MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAK       
Sbjct: 1   MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAK------- 60

Query: 61  HSPYRYFQHVKGTIIAFKPHRPDMYVPTPKCSNCLMRLKIGENMKRGHSLVSNGDRNFIP 120
                                                                       
Sbjct: 61  ------------------------------------------------------------ 120

Query: 121 SLWHHDSSRCKLSQGCNIFGGENNPDLMDLLFRIFRLLGLASLVLLLCTMLLVVLNLKSA 180
                                                                       
Sbjct: 121 ------------------------------------------------------------ 132

Query: 181 SGTDGKVSQLEHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMR 240
              DGKVSQLEHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMR
Sbjct: 181 ---DGKVSQLEHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMR 132

Query: 241 AKAQAAGRGSAPGRGAAPSGRR 263
           AKAQAAGRGSAPGRGAAPSGRR
Sbjct: 241 AKAQAAGRGSAPGRGAAPSGRR 132

[Close]

BLAST of Lsi04G018020 vs. NCBI nr
Match: KAA0064637.1 (small nuclear ribonucleoprotein SmD3a-like [Cucumis melo var. makuwa] >TYK19955.1 small nuclear ribonucleoprotein SmD3a-like [Cucumis melo var. makuwa])

HSP 1 Score: 199.9 bits (507), Expect = 2.7e-47
Identity = 131/262 (50.00%), Postives = 131/262 (50.00%), Query Frame = 0


Query: 1   MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKKISGNRK 60
           MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAK       
Sbjct: 44  MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAK------- 103

Query: 61  HSPYRYFQHVKGTIIAFKPHRPDMYVPTPKCSNCLMRLKIGENMKRGHSLVSNGDRNFIP 120
                                                                       
Sbjct: 104 ------------------------------------------------------------ 163

Query: 121 SLWHHDSSRCKLSQGCNIFGGENNPDLMDLLFRIFRLLGLASLVLLLCTMLLVVLNLKSA 180
                                                                       
Sbjct: 164 ------------------------------------------------------------ 175

Query: 181 SGTDGKVSQLEHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMR 240
              DGKVSQLEHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMR
Sbjct: 224 ---DGKVSQLEHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMR 175

Query: 241 AKAQAAGRGSAPGRGAAPSGRR 263
           AKAQAAGRGSAPGRGA PSGRR
Sbjct: 284 AKAQAAGRGSAPGRGAPPSGRR 175

[Close]

BLAST of Lsi04G018020 vs. NCBI nr
Match: XP_008452950.1 (PREDICTED: small nuclear ribonucleoprotein SmD3a-like [Cucumis melo])

HSP 1 Score: 199.9 bits (507), Expect = 2.7e-47
Identity = 131/262 (50.00%), Postives = 131/262 (50.00%), Query Frame = 0


Query: 1   MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKKISGNRK 60
           MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAK       
Sbjct: 1   MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAK------- 60

Query: 61  HSPYRYFQHVKGTIIAFKPHRPDMYVPTPKCSNCLMRLKIGENMKRGHSLVSNGDRNFIP 120
                                                                       
Sbjct: 61  ------------------------------------------------------------ 120

Query: 121 SLWHHDSSRCKLSQGCNIFGGENNPDLMDLLFRIFRLLGLASLVLLLCTMLLVVLNLKSA 180
                                                                       
Sbjct: 121 ------------------------------------------------------------ 132

Query: 181 SGTDGKVSQLEHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMR 240
              DGKVSQLEHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMR
Sbjct: 181 ---DGKVSQLEHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMR 132

Query: 241 AKAQAAGRGSAPGRGAAPSGRR 263
           AKAQAAGRGSAPGRGA PSGRR
Sbjct: 241 AKAQAAGRGSAPGRGAPPSGRR 132

[Close]

BLAST of Lsi04G018020 vs. NCBI nr
Match: THU54077.1 (hypothetical protein C4D60_Mb10t21220 [Musa balbisiana])

HSP 1 Score: 198.7 bits (504), Expect = 6.0e-47
Identity = 137/263 (52.09%), Postives = 153/263 (58.17%), Query Frame = 0


Query: 1   MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKKISGNRK 60
           MSRSLGIPVKLLHEAAGHVV+VELKSGELYRGSMIECEDNWNCQLENITYTAK +     
Sbjct: 1   MSRSLGIPVKLLHEAAGHVVTVELKSGELYRGSMIECEDNWNCQLENITYTAKVL----- 60

Query: 61  HSPYRYFQHVKGTIIAFKPHRPDMYVPTPKCSNCLMRLKIGENMKRGHSLVSNGDRNFIP 120
                 F +    ++ F                                          P
Sbjct: 61  ----LLFVYRSDEVLGF---------------------------------------GLPP 120

Query: 121 SLWHHDSSRCKLSQGCNIFGGENNPDLMDLLFRIFRLLGLASLVLLLCTMLLVVLNLKSA 180
           S             G  I   + +P  + LL           LV +   + L +  L S+
Sbjct: 121 SF------------GAKI---KMHPPPIKLL-----------LVAITLGLFLFLSGLISS 180

Query: 181 SGTDGKVSQLEHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMR 240
           S  DGKVSQLEHVFIRGSKVRFMVIPDMLKNAPMFKRLDARI+GKG++LGVGRGRAVAMR
Sbjct: 181 S-QDGKVSQLEHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIRGKGSALGVGRGRAVAMR 188

Query: 241 AKAQAAGRGSAP-GRGAAPSGRR 263
           A+AQAAGRG AP GRG  P  RR
Sbjct: 241 ARAQAAGRGGAPTGRGVVPPIRR 188

[Close]

BLAST of Lsi04G018020 vs. TAIR 10
Match: AT1G20580.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 153.7 bits (387), Expect = 2.1e-37
Identity = 112/263 (42.59%), Postives = 120/263 (45.63%), Query Frame = 0


Query: 1   MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKKISGNRK 60
           MSRSLGIPVKLLHEA+GH+V+VELKSGELYRGSMIECEDNWNCQLE+ITYTAK       
Sbjct: 1   MSRSLGIPVKLLHEASGHIVTVELKSGELYRGSMIECEDNWNCQLEDITYTAK------- 60

Query: 61  HSPYRYFQHVKGTIIAFKPHRPDMYVPTPKCSNCLMRLKIGENMKRGHSLVSNGDRNFIP 120
                                                                       
Sbjct: 61  ------------------------------------------------------------ 120

Query: 121 SLWHHDSSRCKLSQGCNIFGGENNPDLMDLLFRIFRLLGLASLVLLLCTMLLVVLNLKSA 180
                                                                       
Sbjct: 121 ------------------------------------------------------------ 131

Query: 181 SGTDGKVSQLEHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMR 240
              DGKVSQLEHVFIRGSKVRFMVIPD+LK+APMFKRLDARIKGK +SLGVGRGR  AMR
Sbjct: 181 ---DGKVSQLEHVFIRGSKVRFMVIPDILKHAPMFKRLDARIKGKSSSLGVGRGRG-AMR 131

Query: 241 AK-AQAAGRGSAPGRGAAPSGRR 263
            K A   GRG+  GRGA P  RR
Sbjct: 241 GKPAAGPGRGTG-GRGAVPPVRR 131

[Close]

BLAST of Lsi04G018020 vs. TAIR 10
Match: AT1G76300.1 (snRNP core protein SMD3 )

HSP 1 Score: 151.8 bits (382), Expect = 7.9e-37
Identity = 109/262 (41.60%), Postives = 115/262 (43.89%), Query Frame = 0


Query: 1   MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKKISGNRK 60
           MSRSLGIPVKLLHE++GH+VSVE+KSGELYRGSMIECEDNWNCQLENITYTAK       
Sbjct: 1   MSRSLGIPVKLLHESSGHIVSVEMKSGELYRGSMIECEDNWNCQLENITYTAK------- 60

Query: 61  HSPYRYFQHVKGTIIAFKPHRPDMYVPTPKCSNCLMRLKIGENMKRGHSLVSNGDRNFIP 120
                                                                       
Sbjct: 61  ------------------------------------------------------------ 120

Query: 121 SLWHHDSSRCKLSQGCNIFGGENNPDLMDLLFRIFRLLGLASLVLLLCTMLLVVLNLKSA 180
                                                                       
Sbjct: 121 ------------------------------------------------------------ 128

Query: 181 SGTDGKVSQLEHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMR 240
              DGKVSQLEHVFIRGS VRF+VIPDMLKNAPMFK  D R KGK ASLGVGRGR  AMR
Sbjct: 181 ---DGKVSQLEHVFIRGSLVRFLVIPDMLKNAPMFK--DVRGKGKSASLGVGRGRGAAMR 128

Query: 241 AKAQAAGRGSAPGRGAAPSGRR 263
           AK    GRG+  GRGA P  RR
Sbjct: 241 AK--GTGRGTGGGRGAVPPVRR 128

[Close]

BLAST of Lsi04G018020 vs. TAIR 10
Match: AT5G27720.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 44.7 bits (104), Expect = 1.4e-04
Identity = 19/47 (40.43%), Postives = 28/47 (59.57%), Query Frame = 0


Query: 7  IPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAK 54
          +P+ LL  A GH + VELK+GE Y G ++ C+   N  L  +  T+K
Sbjct: 2  LPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSK 48

[Close]

BLAST of Lsi04G018020 vs. TAIR 10
Match: AT1G20600.1 (AP2/B3-like transcriptional factor family protein )

HSP 1 Score: 42.0 bits (97), Expect = 8.8e-04
Identity = 19/19 (100.00%), Postives = 19/19 (100.00%), Query Frame = 0


Query: 183 TDGKVSQLEHVFIRGSKVR 202
           TDGKVSQLEHVFIRGSKVR
Sbjct: 214 TDGKVSQLEHVFIRGSKVR 232

The following BLAST results are available for this feature:

BLAST of Lsi04G018020 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LM92	2.9e-36	42.59	Small nuclear ribonucleoprotein SmD3b OS=Arabidopsis thaliana OX=3702 GN=SMD3B P...	[more]
Q9S7E6	1.1e-35	41.60	Small nuclear ribonucleoprotein SmD3a OS=Arabidopsis thaliana OX=3702 GN=SMD3A P...	[more]
P62318	2.0e-16	27.80	Small nuclear ribonucleoprotein Sm D3 OS=Homo sapiens OX=9606 GN=SNRPD3 PE=1 SV=...	[more]
P62320	2.0e-16	27.80	Small nuclear ribonucleoprotein Sm D3 OS=Mus musculus OX=10090 GN=Snrpd3 PE=1 SV...	[more]
P62323	2.0e-16	27.80	Small nuclear ribonucleoprotein Sm D3 OS=Xenopus laevis OX=8355 GN=snrpd3 PE=2 S...	[more]

BLAST of Lsi04G018020 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3D8Q1	1.3e-47	50.00	Small nuclear ribonucleoprotein Sm D3 OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]
A0A1S3BVV0	1.3e-47	50.00	Small nuclear ribonucleoprotein Sm D3 OS=Cucumis melo OX=3656 GN=LOC103493808 PE...	[more]
A0A4S8IYM3	2.9e-47	52.09	Small nuclear ribonucleoprotein Sm D3 OS=Musa balbisiana OX=52838 GN=C4D60_Mb10t...	[more]
A0A0A0L5W4	6.5e-47	49.62	Small nuclear ribonucleoprotein Sm D3 OS=Cucumis sativus OX=3659 GN=Csa_4G658560...	[more]
A0A6J1DDX8	5.5e-46	49.24	Small nuclear ribonucleoprotein Sm D3 OS=Momordica charantia OX=3673 GN=LOC11101...	[more]

BLAST of Lsi04G018020 vs. NCBI nr


Match Name	E-value	Identity	Description
KAF3629783.1	1.8e-51	50.00	Small nuclear ribonucleoprotein Sm D3 [Capsicum annuum]	[more]
XP_038896140.1	7.1e-48	50.38	small nuclear ribonucleoprotein SmD3a-like [Benincasa hispida]	[more]
KAA0064637.1	2.7e-47	50.00	small nuclear ribonucleoprotein SmD3a-like [Cucumis melo var. makuwa] >TYK19955....	[more]
XP_008452950.1	2.7e-47	50.00	PREDICTED: small nuclear ribonucleoprotein SmD3a-like [Cucumis melo]	[more]
THU54077.1	6.0e-47	52.09	hypothetical protein C4D60_Mb10t21220 [Musa balbisiana]	[more]

BLAST of Lsi04G018020 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G20580.1	2.1e-37	42.59	Small nuclear ribonucleoprotein family protein	[more]
AT1G76300.1	7.9e-37	41.60	snRNP core protein SMD3	[more]
AT5G27720.1	1.4e-04	40.43	Small nuclear ribonucleoprotein family protein	[more]
AT1G20600.1	8.8e-04	100.00	AP2/B3-like transcriptional factor family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001163	LSM domain, eukaryotic/archaea-type	SMART	SM00651	Sm3	coord: 10..205 e-value: 1.3E-6 score: 38.0
IPR001163	LSM domain, eukaryotic/archaea-type	PFAM	PF01423	LSM	coord: 11..56 e-value: 2.6E-7 score: 30.2
None	No IPR available	GENE3D	2.30.30.100		coord: 164..216 e-value: 5.1E-9 score: 37.5
None	No IPR available	GENE3D	2.30.30.100		coord: 3..77 e-value: 8.2E-17 score: 62.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 243..262
None	No IPR available	PANTHER	PTHR23338:SF54	SMALL NUCLEAR RIBONUCLEOPROTEIN SM D3	coord: 181..258
None	No IPR available	PANTHER	PTHR23338:SF54	SMALL NUCLEAR RIBONUCLEOPROTEIN SM D3	coord: 1..55
IPR027141	Like-Sm (LSM) domain containing protein, LSm4/SmD1/SmD3	PANTHER	PTHR23338	SMALL NUCLEAR RIBONUCLEOPROTEIN SM	coord: 181..258
IPR027141	Like-Sm (LSM) domain containing protein, LSm4/SmD1/SmD3	PANTHER	PTHR23338	SMALL NUCLEAR RIBONUCLEOPROTEIN SM	coord: 1..55
IPR034099	Small nuclear ribonucleoprotein Sm D3	CDD	cd01721	Sm_D3	coord: 8..54 e-value: 5.99808E-27 score: 97.5917
IPR010920	LSM domain superfamily	SUPERFAMILY	50182	Sm-like ribonucleoproteins	coord: 7..54
IPR010920	LSM domain superfamily	SUPERFAMILY	50182	Sm-like ribonucleoproteins	coord: 184..258

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi04G018020.1	Lsi04G018020.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000387	spliceosomal snRNP assembly
biological_process	GO:0006396	RNA processing
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005681	spliceosomal complex
cellular_component	GO:0097525	spliceosomal snRNP complex