Lsi04G017690 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi04G017690
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Actin-binding transcription modulator
Location	chr04: 24929281 .. 24931410 (-)
RNA-Seq Expression	Lsi04G017690
Synteny	Lsi04G017690

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGGTTTTATTGCTCTAACTAAACCCTAAACCCTTTAATTACTCTGACTAATTGGTCATCTGATTTCCAGATTTTATCAAGGAAGGTCATGATCAGTACGTTTACCGCCACGCAAACGGGTAACGATTTTGATATCTCTTTTAGTTTATCCGATGAACAATTTCCCGCTCATCGTATTTACTATTTTGCCTGTCTTTCTTATTCTAGCTTGTGTGTGATCGGCTTGGCTGCTACGCATATTGCATTCAAAGACAGTGGCGGTGTCACGGCCGTTGATTTCAATGTAGGGAAATCCGATCGCAGCAGCTTTAAAGTCACTGGGAAACGCAAGAAGGTATAGAAATGGTAATTACGGACTTGCGAACTGGTTCGTGTTACTTGGTGATTAAAGAAACAGTGTTGCTAGAAACTAACCTATATACATTGTGATAAAATCTCACTTACTCTTAAGGTGCTGGTTTCGCCTCGTGTGAGTTATGTTGCCTTGGATTTTATGAAATTATCGTCATTAGAAGATTATGTCAATTTCCTATATGATTGTTTATGAACTATATCATAATTCACCATATCACAGACAGTAACATGTTTCAGAACCAGCCTTGGCTTGTGGAGTTCTTTTGTCATAATGGAGGTTTCTTTTTAGTAGAATTTTGATGAACCATAAGAACTGGCATCAGTAGGTTTTACATATATGATAGCCAAACTTTTACTAAATTTCTTTTTGCACTTCTTTACACCTTCAACTTGAAATTTAAAACTCCTGTCCTGTTTGTGAATCTGGATACTGGGATTTAATTATCTGTGCTGAAGTCACTAGTGTTATTTTGCAGAATGCGCAATTCTTTGAGCCCAATTCTGCTCTATGTAAAGTCTGCACCAAAGAGGCTTCTTATATTGTAAGGTTGGATCTTTTGGCTTTTCACCAATTCTGATAACGACATGTCATTTAGCTTCTCTTCAATTGCAACTCAGATCTTTTATGTTATTGTTAGGTGTTCTGTTAAAGGTTCTCTATTGGAAGTAAATGATCGCTTAATAAAGCAGCCAGAGTTGCTCAACACTGTGGTGAGGATAACCTTTTAATTTTATGGCCAATTGGGGTTTAAGAATATTAATTGCTGATACTGTAGTTTGCAAAAACGTGGTTGTTATGCATTCCTATGAGCACGCTACATTACTAATATTTGTCTTATCCCAGATTTTAAAAATCACATGTGGAAGATAACGCTGATATAGTAGCAGATTTACTGTATTAGATCGGCTGAATGAAATTTTACACTGTTACTTCTTTATAGTTTGTGGGTAGATGAGTTCCCTTGTTAGATTTTTCTTTTTATTGTACTAACACAGGCAAGAAAAGCAACTGCTGTTGAAATTTCTAACTAATGCTTAAGCGGAAAATTTCCCAGAAACTTTTGGAGGAAAAGATTGTTCTGATTTTTACTATTGTCACCGATTATTACATATAGTATGAAATTATATTGAAGCAAATTAGAAGAAGGGAAAGAAAGCATGTCTTCCTTTCTTATTTGTAACTTTATGCTATGAAAACAAGAAGAGCCAGTCATCTTTAGTGTTCATTTTCGATTCGCTTACCTTAAGGGGAAAAAATACAAACAAGATTTATACATGTTCAAATGACTTGACTTTTTATATTATGACAGGCTCACAGAGAAGGGTATATTGCTATTGTTATGCCAAAAGCAGCAGACTGGCTTAAAGTGAAGGAGTCATTGCTGAGCCTTGAACAATACAAAAGATTGAGAGAGGTGCACTGAGTCATTCATCCGCATACAGAAACAAGTAACTTTTAGATTTCTTCCATTGATGCTTTCCTCCATCTGTTCTTTAACTCGCCAGGTTTATCTCGTAGCATATTTTAACAGGACTGCCGAGTGATAATAATTCACTCAATTCTGGTAAGCTTGAGAATATATTATATATAGGGTTTGAACTTTCAATCCTTATATCTTCCAGTTTTGGTAGTTGAACTTTATAAAAAGTCTTTGGTCCTTGCCACTTAATTTCAGCACTTCACTTAGCAAAAATCTCATGTAGCATCATCATCATGTAGCCTTTTATTCAAGATTTTTATTAAATAGAATATAAGACTTTGACAAAATGACC

mRNA sequence

ATGGAGGAAGGTCATGATCAGTACGTTTACCGCCACGCAAACGGCTTGTGTGTGATCGGCTTGGCTGCTACGCATATTGCATTCAAAGACAGTGGCGGTGTCACGGCCGTTGATTTCAATGTAGGGAAATCCGATCGCAGCAGCTTTAAAGTCACTGGGAAACGCAAGAAGGCTCACAGAGAAGGGTATATTGCTATTGTTATGCCAAAAGCAGCAGACTGGCTTAAAGTGAAGGAGTCATTGCTGAGCCTTGAACAATACAAAAGATTGAGAGAGGTGCACTGAGTCATTCATCCGCATACAGAAACAAGTAACTTTTAGATTTCTTCCATTGATGCTTTCCTCCATCTGTTCTTTAACTCGCCAGGTTTATCTCGTAGCATATTTTAACAGGACTGCCGAGTGATAATAATTCACTCAATTCTGGTAAGCTTGAGAATATATTATATATAGGGTTTGAACTTTCAATCCTTATATCTTCCAGTTTTGGTAGTTGAACTTTATAAAAAGTCTTTGGTCCTTGCCACTTAATTTCAGCACTTCACTTAGCAAAAATCTCATGTAGCATCATCATCATGTAGCCTTTTATTCAAGATTTTTATTAAATAGAATATAAGACTTTGACAAAATGACC

Coding sequence (CDS)

ATGGAGGAAGGTCATGATCAGTACGTTTACCGCCACGCAAACGGCTTGTGTGTGATCGGCTTGGCTGCTACGCATATTGCATTCAAAGACAGTGGCGGTGTCACGGCCGTTGATTTCAATGTAGGGAAATCCGATCGCAGCAGCTTTAAAGTCACTGGGAAACGCAAGAAGGCTCACAGAGAAGGGTATATTGCTATTGTTATGCCAAAAGCAGCAGACTGGCTTAAAGTGAAGGAGTCATTGCTGAGCCTTGAACAATACAAAAGATTGAGAGAGGTGCACTGA

Protein sequence

MEEGHDQYVYRHANGLCVIGLAATHIAFKDSGGVTAVDFNVGKSDRSSFKVTGKRKKAHREGYIAIVMPKAADWLKVKESLLSLEQYKRLREVH

Homology

[Close]

BLAST of Lsi04G017690 vs. ExPASy TrEMBL
Match: A0A1S4E5T9 (Actin-binding transcription modulator OS=Cucumis melo OX=3656 GN=LOC103503860 PE=3 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 3.5e-35
Identity = 87/142 (61.27%), Postives = 92/142 (64.79%), Query Frame = 0


Query: 1   MEEGHDQYVYRHANGLCVIGLAATHIAFKDSGGVTAVDFNVGKSDRSSFKVTGKRKK--- 60
           ++EGHDQYVYRHANGLCVIGLAATHIAFKD GGVTAVDFNVGKSDRSSFKVTGKRKK   
Sbjct: 82  IKEGHDQYVYRHANGLCVIGLAATHIAFKDGGGVTAVDFNVGKSDRSSFKVTGKRKKNAQ 141

Query: 61  ---------------------------------------------AHREGYIAIVMPKAA 95
                                                         HREGYIAIVMPKAA
Sbjct: 142 FFEPNSALCKVYTKDASYIVRCSVKGSLLEVNDRLIKQPELLNTVPHREGYIAIVMPKAA 201

[Close]

BLAST of Lsi04G017690 vs. ExPASy TrEMBL
Match: A0A5A7VCI3 (Actin-binding transcription modulator OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold205G001340 PE=3 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 3.5e-35
Identity = 87/142 (61.27%), Postives = 92/142 (64.79%), Query Frame = 0


Query: 1   MEEGHDQYVYRHANGLCVIGLAATHIAFKDSGGVTAVDFNVGKSDRSSFKVTGKRKK--- 60
           ++EGHDQYVYRHANGLCVIGLAATHIAFKD GGVTAVDFNVGKSDRSSFKVTGKRKK   
Sbjct: 82  IKEGHDQYVYRHANGLCVIGLAATHIAFKDGGGVTAVDFNVGKSDRSSFKVTGKRKKNAQ 141

Query: 61  ---------------------------------------------AHREGYIAIVMPKAA 95
                                                         HREGYIAIVMPKAA
Sbjct: 142 FFEPNSALCKVYTKDASYIVRCSVKGSLLEVNDRLIKQPELLNTVPHREGYIAIVMPKAA 201

[Close]

BLAST of Lsi04G017690 vs. ExPASy TrEMBL
Match: A0A5D3E6L9 (Actin-binding transcription modulator OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G007830 PE=3 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 3.5e-35
Identity = 87/142 (61.27%), Postives = 92/142 (64.79%), Query Frame = 0


Query: 1   MEEGHDQYVYRHANGLCVIGLAATHIAFKDSGGVTAVDFNVGKSDRSSFKVTGKRKK--- 60
           ++EGHDQYVYRHANGLCVIGLAATHIAFKD GGVTAVDFNVGKSDRSSFKVTGKRKK   
Sbjct: 82  IKEGHDQYVYRHANGLCVIGLAATHIAFKDGGGVTAVDFNVGKSDRSSFKVTGKRKKNAQ 141

Query: 61  ---------------------------------------------AHREGYIAIVMPKAA 95
                                                         HREGYIAIVMPKAA
Sbjct: 142 FFEPNSALCKVYTKDASYIVRCSVKGSLLEVNDRLIKQPELLNTVPHREGYIAIVMPKAA 201

[Close]

BLAST of Lsi04G017690 vs. ExPASy TrEMBL
Match: A0A6J1CMG0 (Actin-binding transcription modulator OS=Momordica charantia OX=3673 GN=LOC111012618 PE=3 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 3.5e-35
Identity = 86/141 (60.99%), Postives = 92/141 (65.25%), Query Frame = 0


Query: 1   MEEGHDQYVYRHANGLCVIGLAATHIAFKDSGGVTAVDFNVGKSDRSSFKVTGKRKK--- 60
           M++GHDQYVYRHANGLCVIGLA+THIAFKDSGG+TAVDFNVGKSDRSSFKVTGKRKK   
Sbjct: 79  MKQGHDQYVYRHANGLCVIGLASTHIAFKDSGGITAVDFNVGKSDRSSFKVTGKRKKNAQ 138

Query: 61  ---------------------------------------------AHREGYIAIVMPKAA 94
                                                        AHREGYIAIVMPK A
Sbjct: 139 FFEPNSALCKVVTKDASYIVRCSVKGSLLEVNDRLMKQPELLNTVAHREGYIAIVMPKPA 198

[Close]

BLAST of Lsi04G017690 vs. ExPASy TrEMBL
Match: A0A7J6H0B3 (Uncharacterized protein OS=Cannabis sativa OX=3483 GN=F8388_012438 PE=4 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 6.0e-35
Identity = 70/93 (75.27%), Postives = 83/93 (89.25%), Query Frame = 0


Query: 1   MEEGHDQYVYRHANGLCVIGLAATHIAFKDSGGVTAVDFNVGKSDRSSFKVTGKRKKAHR 60
           ++ GHDQYVYRHANGLCVIGLA TH+AFKD GG+TAVDFNVGKS+RS  KVTGKRKKA R
Sbjct: 63  LKPGHDQYVYRHANGLCVIGLATTHVAFKDEGGITAVDFNVGKSNRSEIKVTGKRKKADR 122

Query: 61  EGYIAIVMPKAADWLKVKESLLSLEQYKRLREV 94
           EGYI I+MP+ ADWLK+K+SL+  E+YK+LRE+
Sbjct: 123 EGYIGIIMPRPADWLKIKDSLMGSEEYKKLREI 155

[Close]

BLAST of Lsi04G017690 vs. NCBI nr
Match: XP_038896120.1 (protein Abitram [Benincasa hispida] >XP_038896121.1 protein Abitram [Benincasa hispida] >XP_038896122.1 protein Abitram [Benincasa hispida])

HSP 1 Score: 160.6 bits (405), Expect = 6.5e-36
Identity = 89/142 (62.68%), Postives = 94/142 (66.20%), Query Frame = 0


Query: 1   MEEGHDQYVYRHANGLCVIGLAATHIAFKDSGGVTAVDFNVGKSDRSSFKVTGKRKK--- 60
           ++EGHDQYVYRHANGLCVIGLAATHIAFKDSGGVTAVDFNVGKSDRSSFKVTGKRKK   
Sbjct: 80  IKEGHDQYVYRHANGLCVIGLAATHIAFKDSGGVTAVDFNVGKSDRSSFKVTGKRKKNAQ 139

Query: 61  ---------------------------------------------AHREGYIAIVMPKAA 95
                                                        AHREGYIAIVMPKAA
Sbjct: 140 FFEPNSALCKVCTKDASYIVRCSVKGSLLEVNDRLMKQPELLNTVAHREGYIAIVMPKAA 199

[Close]

BLAST of Lsi04G017690 vs. NCBI nr
Match: KAA0063309.1 (protein Simiate [Cucumis melo var. makuwa])

HSP 1 Score: 157.1 bits (396), Expect = 7.2e-35
Identity = 87/142 (61.27%), Postives = 92/142 (64.79%), Query Frame = 0


Query: 1   MEEGHDQYVYRHANGLCVIGLAATHIAFKDSGGVTAVDFNVGKSDRSSFKVTGKRKK--- 60
           ++EGHDQYVYRHANGLCVIGLAATHIAFKD GGVTAVDFNVGKSDRSSFKVTGKRKK   
Sbjct: 82  IKEGHDQYVYRHANGLCVIGLAATHIAFKDGGGVTAVDFNVGKSDRSSFKVTGKRKKNAQ 141

Query: 61  ---------------------------------------------AHREGYIAIVMPKAA 95
                                                         HREGYIAIVMPKAA
Sbjct: 142 FFEPNSALCKVYTKDASYIVRCSVKGSLLEVNDRLIKQPELLNTVPHREGYIAIVMPKAA 201

[Close]

BLAST of Lsi04G017690 vs. NCBI nr
Match: XP_022142526.1 (protein Simiate [Momordica charantia])

HSP 1 Score: 157.1 bits (396), Expect = 7.2e-35
Identity = 86/141 (60.99%), Postives = 92/141 (65.25%), Query Frame = 0


Query: 1   MEEGHDQYVYRHANGLCVIGLAATHIAFKDSGGVTAVDFNVGKSDRSSFKVTGKRKK--- 60
           M++GHDQYVYRHANGLCVIGLA+THIAFKDSGG+TAVDFNVGKSDRSSFKVTGKRKK   
Sbjct: 79  MKQGHDQYVYRHANGLCVIGLASTHIAFKDSGGITAVDFNVGKSDRSSFKVTGKRKKNAQ 138

Query: 61  ---------------------------------------------AHREGYIAIVMPKAA 94
                                                        AHREGYIAIVMPK A
Sbjct: 139 FFEPNSALCKVVTKDASYIVRCSVKGSLLEVNDRLMKQPELLNTVAHREGYIAIVMPKPA 198

[Close]

BLAST of Lsi04G017690 vs. NCBI nr
Match: XP_008466465.1 (PREDICTED: protein Simiate [Cucumis melo] >XP_016903582.1 PREDICTED: protein Simiate [Cucumis melo] >TYK31468.1 protein Simiate [Cucumis melo var. makuwa])

HSP 1 Score: 157.1 bits (396), Expect = 7.2e-35
Identity = 87/142 (61.27%), Postives = 92/142 (64.79%), Query Frame = 0


Query: 1   MEEGHDQYVYRHANGLCVIGLAATHIAFKDSGGVTAVDFNVGKSDRSSFKVTGKRKK--- 60
           ++EGHDQYVYRHANGLCVIGLAATHIAFKD GGVTAVDFNVGKSDRSSFKVTGKRKK   
Sbjct: 82  IKEGHDQYVYRHANGLCVIGLAATHIAFKDGGGVTAVDFNVGKSDRSSFKVTGKRKKNAQ 141

Query: 61  ---------------------------------------------AHREGYIAIVMPKAA 95
                                                         HREGYIAIVMPKAA
Sbjct: 142 FFEPNSALCKVYTKDASYIVRCSVKGSLLEVNDRLIKQPELLNTVPHREGYIAIVMPKAA 201

[Close]

BLAST of Lsi04G017690 vs. NCBI nr
Match: KAF4388461.1 (hypothetical protein F8388_012438 [Cannabis sativa])

HSP 1 Score: 156.4 bits (394), Expect = 1.2e-34
Identity = 70/93 (75.27%), Postives = 83/93 (89.25%), Query Frame = 0


Query: 1   MEEGHDQYVYRHANGLCVIGLAATHIAFKDSGGVTAVDFNVGKSDRSSFKVTGKRKKAHR 60
           ++ GHDQYVYRHANGLCVIGLA TH+AFKD GG+TAVDFNVGKS+RS  KVTGKRKKA R
Sbjct: 63  LKPGHDQYVYRHANGLCVIGLATTHVAFKDEGGITAVDFNVGKSNRSEIKVTGKRKKADR 122

Query: 61  EGYIAIVMPKAADWLKVKESLLSLEQYKRLREV 94
           EGYI I+MP+ ADWLK+K+SL+  E+YK+LRE+
Sbjct: 123 EGYIGIIMPRPADWLKIKDSLMGSEEYKKLREI 155

[Close]

BLAST of Lsi04G017690 vs. TAIR 10
Match: AT1G75980.1 (Single hybrid motif superfamily protein )

HSP 1 Score: 127.5 bits (319), Expect = 5.7e-30
Identity = 69/140 (49.29%), Postives = 81/140 (57.86%), Query Frame = 0


Query: 2   EEGHDQYVYRHANGLCVIGLAATHIAFKDSGGVTAVDFNVGKSDRSSFKVTGKRKK---- 61
           + GHDQY+YRHANGLCVIGLA THIAFKD GG+T+VDFNVGKSDRS  KV+GKRKK    
Sbjct: 84  KSGHDQYIYRHANGLCVIGLAPTHIAFKDEGGITSVDFNVGKSDRSVLKVSGKRKKNALR 143

Query: 62  --------------------------------------------AHREGYIAIVMPKAAD 94
                                                       A REGYIAI+MP+ AD
Sbjct: 144 SESNTALCKVSTAKDTYIVRCCVKGSLLEVNERLIKQPELLNSTADREGYIAIIMPRPAD 203

The following BLAST results are available for this feature:

BLAST of Lsi04G017690 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi04G017690 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S4E5T9	3.5e-35	61.27	Actin-binding transcription modulator OS=Cucumis melo OX=3656 GN=LOC103503860 PE...	[more]
A0A5A7VCI3	3.5e-35	61.27	Actin-binding transcription modulator OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]
A0A5D3E6L9	3.5e-35	61.27	Actin-binding transcription modulator OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]
A0A6J1CMG0	3.5e-35	60.99	Actin-binding transcription modulator OS=Momordica charantia OX=3673 GN=LOC11101...	[more]
A0A7J6H0B3	6.0e-35	75.27	Uncharacterized protein OS=Cannabis sativa OX=3483 GN=F8388_012438 PE=4 SV=1	[more]

BLAST of Lsi04G017690 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038896120.1	6.5e-36	62.68	protein Abitram [Benincasa hispida] >XP_038896121.1 protein Abitram [Benincasa h...	[more]
KAA0063309.1	7.2e-35	61.27	protein Simiate [Cucumis melo var. makuwa]	[more]
XP_022142526.1	7.2e-35	60.99	protein Simiate [Momordica charantia]	[more]
XP_008466465.1	7.2e-35	61.27	PREDICTED: protein Simiate [Cucumis melo] >XP_016903582.1 PREDICTED: protein Sim...	[more]
KAF4388461.1	1.2e-34	75.27	hypothetical protein F8388_012438 [Cannabis sativa]	[more]

BLAST of Lsi04G017690 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G75980.1	5.7e-30	49.29	Single hybrid motif superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR039169	Protein Abitram	PANTHER	PTHR13651	UNCHARACTERIZED	coord: 2..57 coord: 57..92

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi04G017690.1	Lsi04G017690.1	mRNA