Lsi04G017480 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi04G017480
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Transmembrane protein
Location	chr04: 24760013 .. 24760390 (-)
RNA-Seq Expression	Lsi04G017480
Synteny	Lsi04G017480

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTTGGGTGGTGGAGGAAAGAGGTCCCGAGTGGAAGTATGGATGGGCTGAGAGAACAATGGCTTCCATGTCTCTCCCACCTATGCCGCTGCTCGCATTTCTCGGCGTCGTCGTTCTTCTGCTTTCTTTGCAGTCTCAGCAGATGGTGTTCGACTTCAAGCTATTCCTTTTGGCTTTGCCATTTTTGCTGATCTTTGTTGCAAATTCTGTTGCTGTGTCTGGTACAGTTGGTTCTGCTGCCATGAGAACTAAGAACAGGTCGGCTCAGGAGGCCGAAAGGACCTCACCTTGGGGTGCCGCGGTGTTGCTGTTTCTGCTGCTGATATTGCTGTGGAACCGTCCTTACTTTAGGTCCAAGTGGTCACCTCCATCTTAA

mRNA sequence

ATGAGTTGGGTGGTGGAGGAAAGAGGTCCCGAGTGGAAGTATGGATGGGCTGAGAGAACAATGGCTTCCATGTCTCTCCCACCTATGCCGCTGCTCGCATTTCTCGGCGTCGTCGTTCTTCTGCTTTCTTTGCAGTCTCAGCAGATGGTGTTCGACTTCAAGCTATTCCTTTTGGCTTTGCCATTTTTGCTGATCTTTGTTGCAAATTCTGTTGCTGTGTCTGGTACAGTTGGTTCTGCTGCCATGAGAACTAAGAACAGGTCGGCTCAGGAGGCCGAAAGGACCTCACCTTGGGGTGCCGCGGTGTTGCTGTTTCTGCTGCTGATATTGCTGTGGAACCGTCCTTACTTTAGGTCCAAGTGGTCACCTCCATCTTAA

Coding sequence (CDS)

ATGAGTTGGGTGGTGGAGGAAAGAGGTCCCGAGTGGAAGTATGGATGGGCTGAGAGAACAATGGCTTCCATGTCTCTCCCACCTATGCCGCTGCTCGCATTTCTCGGCGTCGTCGTTCTTCTGCTTTCTTTGCAGTCTCAGCAGATGGTGTTCGACTTCAAGCTATTCCTTTTGGCTTTGCCATTTTTGCTGATCTTTGTTGCAAATTCTGTTGCTGTGTCTGGTACAGTTGGTTCTGCTGCCATGAGAACTAAGAACAGGTCGGCTCAGGAGGCCGAAAGGACCTCACCTTGGGGTGCCGCGGTGTTGCTGTTTCTGCTGCTGATATTGCTGTGGAACCGTCCTTACTTTAGGTCCAAGTGGTCACCTCCATCTTAA

Protein sequence

MSWVVEERGPEWKYGWAERTMASMSLPPMPLLAFLGVVVLLLSLQSQQMVFDFKLFLLALPFLLIFVANSVAVSGTVGSAAMRTKNRSAQEAERTSPWGAAVLLFLLLILLWNRPYFRSKWSPPS

Homology

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BLAST of Lsi04G017480 vs. ExPASy TrEMBL
Match: A0A5A7V8G0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold205G001100 PE=4 SV=1)

HSP 1 Score: 232.3 bits (591), Expect = 1.1e-57
Identity = 118/125 (94.40%), Postives = 120/125 (96.00%), Query Frame = 0


Query: 1   MSWVVEERGPEWKYGWAERTMASMSLPPMPLLAFLGVVVLLLSLQSQQMVFDFKLFLLAL 60
           MSWVVEERGPEWKYGW ER MASMSLPPMPLLAFLGVVVLLLSLQSQQMV DFKL LLAL
Sbjct: 1   MSWVVEERGPEWKYGWTERKMASMSLPPMPLLAFLGVVVLLLSLQSQQMVLDFKLLLLAL 60

Query: 61  PFLLIFVANSVAVSGTVGSAAMRTKNRSAQEAERTSPWGAAVLLFLLLILLWNRPYFRSK 120
           PFL+IF ANSVAVSGTVGSAAMRTK+RSAQEAERTSPWGAAVLLFLLLILLWNRPYFRSK
Sbjct: 61  PFLIIFFANSVAVSGTVGSAAMRTKSRSAQEAERTSPWGAAVLLFLLLILLWNRPYFRSK 120

Query: 121 WSPPS 126
           WSPPS
Sbjct: 121 WSPPS 125

[Close]

BLAST of Lsi04G017480 vs. ExPASy TrEMBL
Match: A0A0A0LE80 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G872200 PE=4 SV=1)

HSP 1 Score: 231.9 bits (590), Expect = 1.5e-57
Identity = 117/125 (93.60%), Postives = 121/125 (96.80%), Query Frame = 0


Query: 1   MSWVVEERGPEWKYGWAERTMASMSLPPMPLLAFLGVVVLLLSLQSQQMVFDFKLFLLAL 60
           MSWVVEERGPEWKYGW ER M+SMSLPPMPLLAFLGVVVLLLSLQSQQMV DFKL LLAL
Sbjct: 1   MSWVVEERGPEWKYGWTERKMSSMSLPPMPLLAFLGVVVLLLSLQSQQMVLDFKLLLLAL 60

Query: 61  PFLLIFVANSVAVSGTVGSAAMRTKNRSAQEAERTSPWGAAVLLFLLLILLWNRPYFRSK 120
           PFL+IFVANSVAVSGTVGSA+MRTK+RSAQEAERTSPWGAAVLLFLLLILLWNRPYFRSK
Sbjct: 61  PFLMIFVANSVAVSGTVGSASMRTKSRSAQEAERTSPWGAAVLLFLLLILLWNRPYFRSK 120

Query: 121 WSPPS 126
           WSPPS
Sbjct: 121 WSPPS 125

[Close]

BLAST of Lsi04G017480 vs. ExPASy TrEMBL
Match: A0A5D3E6P1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G008040 PE=4 SV=1)

HSP 1 Score: 230.7 bits (587), Expect = 3.3e-57
Identity = 117/125 (93.60%), Postives = 119/125 (95.20%), Query Frame = 0


Query: 1   MSWVVEERGPEWKYGWAERTMASMSLPPMPLLAFLGVVVLLLSLQSQQMVFDFKLFLLAL 60
           MSWVVEERGPEWKYGW ER MASMSLPPMPLLAFLGVVVLLLSLQSQQMV DFKL LLAL
Sbjct: 1   MSWVVEERGPEWKYGWTERKMASMSLPPMPLLAFLGVVVLLLSLQSQQMVLDFKLLLLAL 60

Query: 61  PFLLIFVANSVAVSGTVGSAAMRTKNRSAQEAERTSPWGAAVLLFLLLILLWNRPYFRSK 120
           PF +IF ANSVAVSGTVGSAAMRTK+RSAQEAERTSPWGAAVLLFLLLILLWNRPYFRSK
Sbjct: 61  PFFIIFFANSVAVSGTVGSAAMRTKSRSAQEAERTSPWGAAVLLFLLLILLWNRPYFRSK 120

Query: 121 WSPPS 126
           WSPPS
Sbjct: 121 WSPPS 125

[Close]

BLAST of Lsi04G017480 vs. ExPASy TrEMBL
Match: A0A6J1FL09 (uncharacterized protein LOC111446211 OS=Cucurbita moschata OX=3662 GN=LOC111446211 PE=4 SV=1)

HSP 1 Score: 190.7 bits (483), Expect = 3.8e-45
Identity = 98/114 (85.96%), Postives = 105/114 (92.11%), Query Frame = 0


Query: 1   MSWVVEERGPEWKYGWAERTMASMSLPPMPLLAFLGVVVLLLSLQSQQMVFDFKLFLLAL 60
           MSW  EER PEWKYGWAERT+ASMS PPMPLLAFLGVV+LLLSLQSQ+M  DFKLFLLAL
Sbjct: 1   MSWAEEERVPEWKYGWAERTIASMSPPPMPLLAFLGVVLLLLSLQSQEMALDFKLFLLAL 60

Query: 61  PFLLIFVANSVAVSGTVGSAAMRTKNRSAQEAERTSPWGAAVLLFLLLILLWNR 115
           PFLLIF+ANS+ VSG+V S AMRTKNRSAQEAE+TSPWGAAVLLFLLLILLWNR
Sbjct: 61  PFLLIFIANSLLVSGSVASTAMRTKNRSAQEAEKTSPWGAAVLLFLLLILLWNR 114

[Close]

BLAST of Lsi04G017480 vs. ExPASy TrEMBL
Match: W9RNV3 (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_016054 PE=4 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 2.0e-22
Identity = 65/134 (48.51%), Postives = 86/134 (64.18%), Query Frame = 0


Query: 1   MSWVVEE--RGPEWKYGWAERTMASMSLPPMPLLAFLGVVVLLLSL--------QSQQMV 60
           M W++ E   G  WK GW ERT+AS++ PP+PLLA +G+VV+LLS+        Q Q+ V
Sbjct: 1   MGWLIREDRSGSSWKLGWTERTLASLTAPPLPLLAIVGIVVVLLSVSSYANYKSQMQKTV 60

Query: 61  FDFKLFLLALPFLLIFVANSVAVSGTVGSAAMRTKNRSAQEAERTSPWGAAVLLFLLLIL 120
             F+LFLL LP +LIFVA+SV   GTV     RTK+ +  E   T PWG  VLL +L +L
Sbjct: 61  IGFRLFLLLLPLVLIFVAHSVTKYGTVLVVRPRTKHEAVSEGGGT-PWGVVVLLVVLAVL 120

Query: 121 LWNRPYFRSKWSPP 125
           +  + YF+SKW PP
Sbjct: 121 ISYQSYFQSKWWPP 133

[Close]

BLAST of Lsi04G017480 vs. NCBI nr
Match: KAA0063287.1 (hypothetical protein E6C27_scaffold205G001100 [Cucumis melo var. makuwa])

HSP 1 Score: 232.3 bits (591), Expect = 2.3e-57
Identity = 118/125 (94.40%), Postives = 120/125 (96.00%), Query Frame = 0


Query: 1   MSWVVEERGPEWKYGWAERTMASMSLPPMPLLAFLGVVVLLLSLQSQQMVFDFKLFLLAL 60
           MSWVVEERGPEWKYGW ER MASMSLPPMPLLAFLGVVVLLLSLQSQQMV DFKL LLAL
Sbjct: 1   MSWVVEERGPEWKYGWTERKMASMSLPPMPLLAFLGVVVLLLSLQSQQMVLDFKLLLLAL 60

Query: 61  PFLLIFVANSVAVSGTVGSAAMRTKNRSAQEAERTSPWGAAVLLFLLLILLWNRPYFRSK 120
           PFL+IF ANSVAVSGTVGSAAMRTK+RSAQEAERTSPWGAAVLLFLLLILLWNRPYFRSK
Sbjct: 61  PFLIIFFANSVAVSGTVGSAAMRTKSRSAQEAERTSPWGAAVLLFLLLILLWNRPYFRSK 120

Query: 121 WSPPS 126
           WSPPS
Sbjct: 121 WSPPS 125

[Close]

BLAST of Lsi04G017480 vs. NCBI nr
Match: KGN60038.1 (hypothetical protein Csa_001668 [Cucumis sativus])

HSP 1 Score: 231.9 bits (590), Expect = 3.1e-57
Identity = 117/125 (93.60%), Postives = 121/125 (96.80%), Query Frame = 0


Query: 1   MSWVVEERGPEWKYGWAERTMASMSLPPMPLLAFLGVVVLLLSLQSQQMVFDFKLFLLAL 60
           MSWVVEERGPEWKYGW ER M+SMSLPPMPLLAFLGVVVLLLSLQSQQMV DFKL LLAL
Sbjct: 1   MSWVVEERGPEWKYGWTERKMSSMSLPPMPLLAFLGVVVLLLSLQSQQMVLDFKLLLLAL 60

Query: 61  PFLLIFVANSVAVSGTVGSAAMRTKNRSAQEAERTSPWGAAVLLFLLLILLWNRPYFRSK 120
           PFL+IFVANSVAVSGTVGSA+MRTK+RSAQEAERTSPWGAAVLLFLLLILLWNRPYFRSK
Sbjct: 61  PFLMIFVANSVAVSGTVGSASMRTKSRSAQEAERTSPWGAAVLLFLLLILLWNRPYFRSK 120

Query: 121 WSPPS 126
           WSPPS
Sbjct: 121 WSPPS 125

[Close]

BLAST of Lsi04G017480 vs. NCBI nr
Match: TYK31488.1 (hypothetical protein E5676_scaffold455G008040 [Cucumis melo var. makuwa])

HSP 1 Score: 230.7 bits (587), Expect = 6.8e-57
Identity = 117/125 (93.60%), Postives = 119/125 (95.20%), Query Frame = 0


Query: 1   MSWVVEERGPEWKYGWAERTMASMSLPPMPLLAFLGVVVLLLSLQSQQMVFDFKLFLLAL 60
           MSWVVEERGPEWKYGW ER MASMSLPPMPLLAFLGVVVLLLSLQSQQMV DFKL LLAL
Sbjct: 1   MSWVVEERGPEWKYGWTERKMASMSLPPMPLLAFLGVVVLLLSLQSQQMVLDFKLLLLAL 60

Query: 61  PFLLIFVANSVAVSGTVGSAAMRTKNRSAQEAERTSPWGAAVLLFLLLILLWNRPYFRSK 120
           PF +IF ANSVAVSGTVGSAAMRTK+RSAQEAERTSPWGAAVLLFLLLILLWNRPYFRSK
Sbjct: 61  PFFIIFFANSVAVSGTVGSAAMRTKSRSAQEAERTSPWGAAVLLFLLLILLWNRPYFRSK 120

Query: 121 WSPPS 126
           WSPPS
Sbjct: 121 WSPPS 125

[Close]

BLAST of Lsi04G017480 vs. NCBI nr
Match: KAG7037914.1 (hypothetical protein SDJN02_01545, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 193.0 bits (489), Expect = 1.6e-45
Identity = 99/114 (86.84%), Postives = 106/114 (92.98%), Query Frame = 0


Query: 1   MSWVVEERGPEWKYGWAERTMASMSLPPMPLLAFLGVVVLLLSLQSQQMVFDFKLFLLAL 60
           MSW  EER PEWKYGWAERT+ASMS PPMPLLAFLGVV+LLLSLQSQ+M FDFKLFLLAL
Sbjct: 1   MSWAEEERVPEWKYGWAERTIASMSPPPMPLLAFLGVVLLLLSLQSQEMAFDFKLFLLAL 60

Query: 61  PFLLIFVANSVAVSGTVGSAAMRTKNRSAQEAERTSPWGAAVLLFLLLILLWNR 115
           PFLLIF+ANS+ VSG+V S AMRTKNRSAQEAE+TSPWGAAVLLFLLLILLWNR
Sbjct: 61  PFLLIFIANSLLVSGSVASTAMRTKNRSAQEAEKTSPWGAAVLLFLLLILLWNR 114

[Close]

BLAST of Lsi04G017480 vs. NCBI nr
Match: KAG6608597.1 (hypothetical protein SDJN03_01939, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 192.2 bits (487), Expect = 2.7e-45
Identity = 99/114 (86.84%), Postives = 105/114 (92.11%), Query Frame = 0


Query: 1   MSWVVEERGPEWKYGWAERTMASMSLPPMPLLAFLGVVVLLLSLQSQQMVFDFKLFLLAL 60
           MSW  EER  EWKYGWAERTMASMSLPPMPLLAFLGVV+LLLSLQSQ M FDFKLFLLAL
Sbjct: 1   MSWAEEERVQEWKYGWAERTMASMSLPPMPLLAFLGVVLLLLSLQSQDMAFDFKLFLLAL 60

Query: 61  PFLLIFVANSVAVSGTVGSAAMRTKNRSAQEAERTSPWGAAVLLFLLLILLWNR 115
           PFLLIF+ANS+ V+G+V S AMRTKNRSAQEAE+TSPWGAAVLLFLLLILLWNR
Sbjct: 61  PFLLIFIANSLLVAGSVASTAMRTKNRSAQEAEKTSPWGAAVLLFLLLILLWNR 114

[Close]

BLAST of Lsi04G017480 vs. TAIR 10
Match: AT5G42146.1 (unknown protein; Has 98 Blast hits to 98 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 98; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 79.3 bits (194), Expect = 2.4e-15
Identity = 49/135 (36.30%), Postives = 72/135 (53.33%), Query Frame = 0


Query: 1   MSWVVEE-RGPEWKYGWAERTMASMSLPPMPLLAFLGVVVLLLSLQS--------QQMVF 60
           M W ++E RG  WK GW E T+ + S PP+ LLA L ++ LLL L S        ++   
Sbjct: 1   MGWFIKERRGGSWKRGWLEETLLTSSAPPLTLLALLAIISLLLFLSSYPRYKYEVEKTAA 60

Query: 61  DFKLFLLALPFLLIFVANSVAVSGTV---GSAAMRTKNRSAQEAERTSPWGAAVLLFLLL 120
           + KLF+L LP L +FV  S++    +    S ++R     +   E   PWG  ++L LLL
Sbjct: 61  NLKLFMLFLPILFVFVLVSLSFVHRLLFKSSYSVRANQAKSLFGEGNFPWGVLLMLILLL 120

Query: 121 ILLWNRPYFRSKWSP 124
           +L+  + YF S W P
Sbjct: 121 LLVSKQSYFHSLWYP 135

The following BLAST results are available for this feature:

BLAST of Lsi04G017480 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi04G017480 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7V8G0	1.1e-57	94.40	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A0A0LE80	1.5e-57	93.60	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G872200 PE=4 SV=1	[more]
A0A5D3E6P1	3.3e-57	93.60	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A6J1FL09	3.8e-45	85.96	uncharacterized protein LOC111446211 OS=Cucurbita moschata OX=3662 GN=LOC1114462...	[more]
W9RNV3	2.0e-22	48.51	Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_016054 PE=4 SV=1	[more]

BLAST of Lsi04G017480 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0063287.1	2.3e-57	94.40	hypothetical protein E6C27_scaffold205G001100 [Cucumis melo var. makuwa]	[more]
KGN60038.1	3.1e-57	93.60	hypothetical protein Csa_001668 [Cucumis sativus]	[more]
TYK31488.1	6.8e-57	93.60	hypothetical protein E5676_scaffold455G008040 [Cucumis melo var. makuwa]	[more]
KAG7037914.1	1.6e-45	86.84	hypothetical protein SDJN02_01545, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6608597.1	2.7e-45	86.84	hypothetical protein SDJN03_01939, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Lsi04G017480 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G42146.1	2.4e-15	36.30	unknown protein; Has 98 Blast hits to 98 proteins in 12 species: Archae - 0; Bac...	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33306	EXPRESSED PROTEIN-RELATED-RELATED	coord: 1..124
None	No IPR available	PANTHER	PTHR33306:SF26	PROTEIN, PUTATIVE-RELATED	coord: 1..124

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi04G017480.1	Lsi04G017480.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane