Lsi04G017320 (gene) Bottle gourd (USVL1VR-Ls) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATTAAATTGGGTGTGATCCTAATTTGGCAGCCTCTTTATTTCTCAAATATTTTCCTACAATGGAAACTCAACTCTTTCAAACAACTACTACCAAACCTAGATTTAAACGAATTTGTGTCTTCTGTGGTAGCAGCCCCGGCAAGAACCCTTCCTATCAACTTGCTGCACTTCAACTAGCCCAACAACTGGTACGTCTAACTCGTCATAACTTCATACGTTACAGTAAATTTTATATAAGATTAATTTGATACTTTCACTAAATAGCAAGATTGGATTTGAGGTTTAGCATTGTTGTTAGATTATTTTATTTTGATGAGAATTATTTATGATCGAAGAATTTTTTTGGAGTGAAAAGAAAATTACGATATTTAAATTGAGAGAAGTTGAAGATTCAACGTTAGAAAAATTTTAAAAATCTCACACCCTTTATAAGATAGATATTATCTAATATGAGAAAAAGGTTAGAGTTTATCCCAACCTTTTATGACATAGATTTGAGTTTGTTGATCGGATGCACCCAAAATTTGAAATGAAGAGATAAGATGATTAATAATTTAATGATGTTTGTTTTCCATTAATATAATTTGTTTTAGAAATATGTTGTTTTGAATTTGAAGTATGGGGTATGAATAATTAATATTAATTAGAGTAAGGGTTGATTAAGGATAAATTAGTGCAGGTGGAAAGGAACATTGACTTGGTTTATGGAGGAGGCAGCATCGGCCTCATGGGTTTAGTCTCTCAAGCCGTGCATGATGGTGGTTGCCACGTCTTAGGGTAACTCTATTTCTTTCTTTTAAAACTATATATATATATAAAGAGAGTTCGGAATGTACCTAAAAGTATTGTTCTTCTATCATTCTTTTCTTTTATATTTTAACTTGTGTGATTAAGATATTTATTTTTTCCTTATAGTTCGCAAGGTTAAATACTTAAGTGGATGATAAGCTGTACATATTTCTTGTAATTCATTCATTTGGTCAACCATACATTATCATGTGCTGCATGACAAATTTTTATTTCTTCTTCTAATATTTTGTTTAGAGTTTTTTTTACTATATAATTGAAGTTGATTTTAAAAGATGAATGCAGGTCAAGATACACTCAAATATTTCTTAAATGTATATAACTAATTTGATAGTTTATTTTGGCTTTTATTTGCAGTGTGATTCCAAAGACTCTCATGTTAAGAGAGGTAAATTGATTTTTCTTTTCTTTCTGATAATTGTAACATATTTATATGATTTAATTAAAGTAATTGGATGAGAATCAAACATATGTCTGATTATTTTCAGCTGACCGGAGAAACGGTGGGAGAAGTGAGACCTGTATCCGGCATGCACCAACGTAAAGCTGAGATGGTCAAACAAGCTGACGCATTCATTGCCTTACCAGGTCTGCTTATAATTATTGCCCCATCTTAATATTTAATTAAAAGCCAACTCATAAGTTAAATTAAATGAAATTAATTTCTCCCAAGTTTTTAGTGAATTATATGATGATTATTATTATTATTTGCAGGTGGGTATGGCACTCTAGAGGAGCTACTGGAAGTAATCACTTGGGCTCAACTTGGAATCCATGAAAAACCTGTAAAAATATCTCACTTTTTCTTTTCCCCCTTTAAAATTAACTGCACCCAATTGAAGCTCAATTTCATGCCTCTTTCTATTATATATTAAATCCTTACGATAGAGCTTTCCACAAAAGTTAGTCAATAAAGCATATAAAAGGTAAAAACGTGAGTGTGCGTGTGTGTTCTTTTTTAATAATGGCCACTTCATAAGTAGGCCAACCATTATCCATAATACCAAAAGAAGTTTGTTGCTTTATCATCATTGCAACCAAGAAGAAGTTCATCAATAATAAAAATAATAATTACTTTTGTTGATGTCAAAATTTGGACAGTGAAAATCTACCTAGCCTTTATATGACGACACTAGTACTAAATTTGTTTAAAATAGAGAAGAACGTAGCTTGTAAAAAAGAAAATTTGCATACCGATGTGGTGCTCACCACATACACTCCGATGCTTAAGTTAGAGAATGAAAGAGTGTGGAAGCTAGGGAGTCGAGAGTAGGAATCAAGTTACCTCATATGAAACTATAATGATGTATTTATAGAGGAGCTTGACTAGGTTGTTCCGATAGGGCTTCAGAGTCGCTTTAGGATAGTCATACAAACTTACTGGGCTAAGGGGCGTCGCCCTGTTTTGCATTTGGCTAGGTTTGGCCTTGGCAAGGCTGAGCATCTTCCCCTAGGCCCATTTTGATCTTAGGCTAATGCTTTGGGCCGAGGTGTACGTGGGACATGCCCTATTAGCTATTTTGCTAGGCCCGACTGAAGCCAAGCACATTAATTTGAGCTTTGACGCAAACGAATCATTTTCTCCAAGTCCAGGTTGCTATCATTGGCTCAAACTTTATTATTTTCTCGACCTTGGCTTTTGTCTTTATTTCATGTTGATTATATCCTTTTGGTCCAAAATCATACTCTCTTTTAAAGTTGATGGTTGAATATTTGTTCGAGTAATTGTTGAATTAAAAAACGATTACTTATTAGTGATGTGTGGTGGTGCAGGTGGGGTTGTTGAACGTCGACGGCTATTACAACGCCCTTCTCTCTTTCATAGACAAAGCAGTAGCGGAAGGTTTTATTACACCGGCTGCCCGTAACATTATTGTTTCTGCCCAGACTGCCCAAGAACTCATGTCCAAGCTTGAGGTACATTTTCTATTTTGGTCAACCAATCATTTGTTTACACGTGGGGAGGATCTATTTGCAGGGCCCACAGAAATTAGTCAAATCAAAATGGAATTAACGGCAGGAACTTTTTTTTATTTTTTATTTTTTATTTTTTTTAAACGAAGGATTACAAGCCCAAGCACTGCGGAATTGAAGGCTGGATATGATGGGGAAATGGAGAAACAAATGGGTTTCAAATTCAATATCAGACATTGCTCGTTGACTTAGTCTCATTATTATTTTGGACCAGCAAAAGAAAAAAGACAACAATTTTTATGTCTGTTTGTGCTTTGAGCTTGTACCATCACAGTTGTGTTCTAGTTCGCTGTGTTGATCATATCAAGCCTCTCCATTTAATTTGTAAATATATCTGCAATAGATGATGGAACTGAATCTTATAATTGATGGGAATCAGTTAATTCTTCTTCGATGTCCACGTTACTTAATATAGGAATTCTGGCCTAATATCGTTTAATTCT ATTAAATTGGGTGTGATCCTAATTTGGCAGCCTCTTTATTTCTCAAATATTTTCCTACAATGGAAACTCAACTCTTTCAAACAACTACTACCAAACCTAGATTTAAACGAATTTGTGTCTTCTGTGGTAGCAGCCCCGGCAAGAACCCTTCCTATCAACTTGCTGCACTTCAACTAGCCCAACAACTGAAATATGTTGTTTTGAATTTGAAGTATGGGGTGGAAAGGAACATTGACTTGGTTTATGGAGGAGGCAGCATCGGCCTCATGGGTTTAGTCTCTCAAGCCGTGCATGATGGTGGTTGCCACGTCTTAGGTAATTGGATGAGAATCAAACATATGTCTGATTATTTTCAGCTGACCGGAGAAACGGTGGGAGAAGTGAGACCTGTATCCGGCATGCACCAACGTAAAGCTGAGATGGTCAAACAAGCTGACGCATTCATTGCCTTACCAGGTGGGTATGGCACTCTAGAGGAGCTACTGGAAGTAATCACTTGGGCTCAACTTGGAATCCATGAAAAACCTGTGGGGTTGTTGAACGTCGACGGCTATTACAACGCCCTTCTCTCTTTCATAGACAAAGCAGTAGCGGAAGGTTTTATTACACCGGCTGCCCGTAACATTATTGTTTCTGCCCAGACTGCCCAAGAACTCATGTCCAAGCTTGAGGATTACAAGCCCAAGCACTGCGGAATTGAAGGCTGGATATGATGGGGAAATGGAGAAACAAATGGGTTTCAAATTCAATATCAGACATTGCTCGTTGACTTAGTCTCATTATTATTTTGGACCAGCAAAAGAAAAAAGACAACAATTTTTATGTCTGTTTGTGCTTTGAGCTTGTACCATCACAGTTGTGTTCTAGTTCGCTGTGTTGATCATATCAAGCCTCTCCATTTAATTTGTAAATATATCTGCAATAGATGATGGAACTGAATCTTATAATTGATGGGAATCAGTTAATTCTTCTTCGATGTCCACGTTACTTAATATAGGAATTCTGGCCTAATATCGTTTAATTCT ATGGAAACTCAACTCTTTCAAACAACTACTACCAAACCTAGATTTAAACGAATTTGTGTCTTCTGTGGTAGCAGCCCCGGCAAGAACCCTTCCTATCAACTTGCTGCACTTCAACTAGCCCAACAACTGAAATATGTTGTTTTGAATTTGAAGTATGGGGTGGAAAGGAACATTGACTTGGTTTATGGAGGAGGCAGCATCGGCCTCATGGGTTTAGTCTCTCAAGCCGTGCATGATGGTGGTTGCCACGTCTTAGGTAATTGGATGAGAATCAAACATATGTCTGATTATTTTCAGCTGACCGGAGAAACGGTGGGAGAAGTGAGACCTGTATCCGGCATGCACCAACGTAAAGCTGAGATGGTCAAACAAGCTGACGCATTCATTGCCTTACCAGGTGGGTATGGCACTCTAGAGGAGCTACTGGAAGTAATCACTTGGGCTCAACTTGGAATCCATGAAAAACCTGTGGGGTTGTTGAACGTCGACGGCTATTACAACGCCCTTCTCTCTTTCATAGACAAAGCAGTAGCGGAAGGTTTTATTACACCGGCTGCCCGTAACATTATTGTTTCTGCCCAGACTGCCCAAGAACTCATGTCCAAGCTTGAGGATTACAAGCCCAAGCACTGCGGAATTGAAGGCTGGATATGA METQLFQTTTTKPRFKRICVFCGSSPGKNPSYQLAALQLAQQLKYVVLNLKYGVERNIDLVYGGGSIGLMGLVSQAVHDGGCHVLGNWMRIKHMSDYFQLTGETVGEVRPVSGMHQRKAEMVKQADAFIALPGGYGTLEELLEVITWAQLGIHEKPVGLLNVDGYYNALLSFIDKAVAEGFITPAARNIIVSAQTAQELMSKLEDYKPKHCGIEGWI Homology
BLAST of Lsi04G017320 vs. ExPASy Swiss-Prot
Match: Q8L8B8 (Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG3 OS=Arabidopsis thaliana OX=3702 GN=LOG3 PE=1 SV=1) HSP 1 Score: 273.5 bits (698), Expect = 2.1e-72 Identity = 143/199 (71.86%), Postives = 157/199 (78.89%), Query Frame = 0
BLAST of Lsi04G017320 vs. ExPASy Swiss-Prot
Match: Q8GW29 (Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG7 OS=Arabidopsis thaliana OX=3702 GN=LOG7 PE=1 SV=2) HSP 1 Score: 273.1 bits (697), Expect = 2.7e-72 Identity = 141/199 (70.85%), Postives = 159/199 (79.90%), Query Frame = 0
BLAST of Lsi04G017320 vs. ExPASy Swiss-Prot
Match: Q9LFH3 (Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG4 OS=Arabidopsis thaliana OX=3702 GN=LOG4 PE=1 SV=1) HSP 1 Score: 266.5 bits (680), Expect = 2.6e-70 Identity = 141/202 (69.80%), Postives = 156/202 (77.23%), Query Frame = 0
BLAST of Lsi04G017320 vs. ExPASy Swiss-Prot
Match: Q8H7U8 (Probable cytokinin riboside 5'-monophosphate phosphoribohydrolase LOGL3 OS=Oryza sativa subsp. japonica OX=39947 GN=LOGL3 PE=2 SV=1) HSP 1 Score: 266.5 bits (680), Expect = 2.6e-70 Identity = 140/204 (68.63%), Postives = 158/204 (77.45%), Query Frame = 0
BLAST of Lsi04G017320 vs. ExPASy Swiss-Prot
Match: Q7XDB8 (Probable cytokinin riboside 5'-monophosphate phosphoribohydrolase LOGL10 OS=Oryza sativa subsp. japonica OX=39947 GN=LOGL10 PE=2 SV=1) HSP 1 Score: 264.2 bits (674), Expect = 1.3e-69 Identity = 138/197 (70.05%), Postives = 154/197 (78.17%), Query Frame = 0
BLAST of Lsi04G017320 vs. ExPASy TrEMBL
Match: A0A0A0LGH1 (Cytokinin riboside 5'-monophosphate phosphoribohydrolase OS=Cucumis sativus OX=3659 GN=Csa_3G872060 PE=3 SV=1) HSP 1 Score: 357.1 bits (915), Expect = 5.3e-95 Identity = 184/217 (84.79%), Postives = 189/217 (87.10%), Query Frame = 0
BLAST of Lsi04G017320 vs. ExPASy TrEMBL
Match: A0A6J1ISJ1 (Cytokinin riboside 5'-monophosphate phosphoribohydrolase OS=Cucurbita maxima OX=3661 GN=LOC111480218 PE=3 SV=1) HSP 1 Score: 354.8 bits (909), Expect = 2.6e-94 Identity = 182/216 (84.26%), Postives = 187/216 (86.57%), Query Frame = 0
BLAST of Lsi04G017320 vs. ExPASy TrEMBL
Match: A0A1S3CSP0 (Cytokinin riboside 5'-monophosphate phosphoribohydrolase OS=Cucumis melo OX=3656 GN=LOC103503886 PE=3 SV=1) HSP 1 Score: 353.2 bits (905), Expect = 7.7e-94 Identity = 184/217 (84.79%), Postives = 189/217 (87.10%), Query Frame = 0
BLAST of Lsi04G017320 vs. ExPASy TrEMBL
Match: A0A6J1FK34 (Cytokinin riboside 5'-monophosphate phosphoribohydrolase OS=Cucurbita moschata OX=3662 GN=LOC111446042 PE=3 SV=1) HSP 1 Score: 352.4 bits (903), Expect = 1.3e-93 Identity = 181/223 (81.17%), Postives = 188/223 (84.30%), Query Frame = 0
BLAST of Lsi04G017320 vs. ExPASy TrEMBL
Match: A0A6J1C1J3 (Cytokinin riboside 5'-monophosphate phosphoribohydrolase OS=Momordica charantia OX=3673 GN=LOC111006568 PE=3 SV=1) HSP 1 Score: 318.9 bits (816), Expect = 1.6e-83 Identity = 168/212 (79.25%), Postives = 176/212 (83.02%), Query Frame = 0
BLAST of Lsi04G017320 vs. NCBI nr
Match: KGN60024.1 (hypothetical protein Csa_000706 [Cucumis sativus]) HSP 1 Score: 357.1 bits (915), Expect = 1.1e-94 Identity = 184/217 (84.79%), Postives = 189/217 (87.10%), Query Frame = 0
BLAST of Lsi04G017320 vs. NCBI nr
Match: XP_023525368.1 (cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG3-like [Cucurbita pepo subsp. pepo] >KAG6608588.1 Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG7, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 356.3 bits (913), Expect = 1.9e-94 Identity = 182/217 (83.87%), Postives = 188/217 (86.64%), Query Frame = 0
BLAST of Lsi04G017320 vs. NCBI nr
Match: XP_038898469.1 (cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG7-like [Benincasa hispida]) HSP 1 Score: 355.5 bits (911), Expect = 3.2e-94 Identity = 182/217 (83.87%), Postives = 188/217 (86.64%), Query Frame = 0
BLAST of Lsi04G017320 vs. NCBI nr
Match: XP_022980902.1 (cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG3-like [Cucurbita maxima]) HSP 1 Score: 354.8 bits (909), Expect = 5.4e-94 Identity = 182/216 (84.26%), Postives = 187/216 (86.57%), Query Frame = 0
BLAST of Lsi04G017320 vs. NCBI nr
Match: XP_008466494.1 (PREDICTED: cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG7-like isoform X1 [Cucumis melo]) HSP 1 Score: 353.2 bits (905), Expect = 1.6e-93 Identity = 184/217 (84.79%), Postives = 189/217 (87.10%), Query Frame = 0
BLAST of Lsi04G017320 vs. TAIR 10
Match: AT2G37210.1 (lysine decarboxylase family protein ) HSP 1 Score: 273.5 bits (698), Expect = 1.5e-73 Identity = 143/199 (71.86%), Postives = 157/199 (78.89%), Query Frame = 0
BLAST of Lsi04G017320 vs. TAIR 10
Match: AT5G06300.1 (Putative lysine decarboxylase family protein ) HSP 1 Score: 273.1 bits (697), Expect = 1.9e-73 Identity = 141/199 (70.85%), Postives = 159/199 (79.90%), Query Frame = 0
BLAST of Lsi04G017320 vs. TAIR 10
Match: AT3G53450.1 (Putative lysine decarboxylase family protein ) HSP 1 Score: 266.5 bits (680), Expect = 1.8e-71 Identity = 141/202 (69.80%), Postives = 156/202 (77.23%), Query Frame = 0
BLAST of Lsi04G017320 vs. TAIR 10
Match: AT2G28305.1 (Putative lysine decarboxylase family protein ) HSP 1 Score: 263.1 bits (671), Expect = 2.0e-70 Identity = 135/197 (68.53%), Postives = 157/197 (79.70%), Query Frame = 0
BLAST of Lsi04G017320 vs. TAIR 10
Match: AT2G35990.1 (Putative lysine decarboxylase family protein ) HSP 1 Score: 259.6 bits (662), Expect = 2.2e-69 Identity = 135/200 (67.50%), Postives = 154/200 (77.00%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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