
Lsi04G017250 (gene) Bottle gourd (USVL1VR-Ls) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATGAACGACTTGAGTGATGGCTTTTTAATCGGCGACCAGACGAGACGACTCGACGTCGGACGAAAGGGGTTCACTGATCTACCGTCGCGTCTGGTTTCTTCCTTCAATTAAAATTCATTATTCTATTGTTTTTCAATTACCGGTAAACCAGAGCCGATGCACGTCGTGGCATCGCGTAAGGCTTTTGGATTCTACGTGTCACTGTAAGAAGGGAAAGAAACGCTGCGTTGCTCTTCTGAGCCTCGGCCTCTACAATGACCCACATTTCCGATGGGCTTTCCCACTTTTATGGCATAATCTCATACGAAAAAAAAATAGTTGCAAATATAGCACTGAACGGAAAAATATTAGTGAATGTAGCATAATGAAAAAAAATATATATATAGAATTTCACTATATATATAGACCATTCTTTTTATCGTTATAAACTTAATTATTATGGTTAAAAATGTTACCTATTGTAATTTTAGATATTTAAACACTATTTTGGGTGTGTAAATCTCAAAATATTTTTTTTCTATAAGGAAATAAAATGTATTTTTTTTTCTTTTTGAGATAAATAGCAAACTAAAAATTAAATTGGGCTCTTTTCAAATATAAAATAATAAGTTAAATTATTTACAAATATAGAAAAATTTTAAGTGTATCAATGATAGACTGTAAAATTTTTCTATATTTGTAAATAGTTTGATATTTTTTTTGTTTATAGTAATTTTCCAATTAAATTTTATCTGAATTTGTGTATTATTTACCCTCTCATTTGACAGCCTCCTTCAACTTTTTTTTTTTTTTTTTTTTTTTCTTTGGTCTAGAGAAAAAGTCTTTCAACTTCTATACTAGATCACCAACGAAACGAGTGTTATTTAATTTGGTACTAGAAGAATAATTATAAGAATTTTACAATTTTAGACAGGGCAGGGAGGTCATTTACCAAAATTACCCTCGATTAGAGTTCGATATTCGGGCAGACGCACACGTCAGACTGTTAGAATTGATAGGTGACTCGGATCCAAAATTGCAGAGCAAATTAGGGTTCTACGATCCAGGTGGGAAACGGAAACTCATTGTCATTGGCATTCGAAGGAGGAGACGACTCCAAGCATTTCTGTGTTGTGACTGATAATCATCATTTACATCTAATGGCTCCACCTCCTGGCCCTTACTCCGGCACCAGCACCCTCGCTCTGGTATTTCCCCTTTCTTTTCCCCTTAGATTCTAATCATCTGCAGAACTACTTTCTCTTATATTTCCTTTTTTTATCCAGCTCGATCCTTGTGATGTCCCCTATCCACTTCAATACATCTAGATTTATCCGTTTCAAATCTTTTATTTTATTTTTCGAATTTTTTCATTATATTATTTTTAAATCCTGTCTTGTGAATTAAATGGATCGGTTCATTTTAGGTCCTAAAATTTTTGTCTCCTTTAATATCCTAATTTTTTGGGTATTGATTTCTACAGGTCGCTCGTGCATCAGCATTCACCTTTGGTTTGGTTTACGGAAGCATTAAGCTCAAGGTTCTGAAGGTAAATTGGAATCAACTATTGTCCAACCGTTGTTGTTATAGTAATACATTCGTTGAAATGTATTTTTGTAGGACATGGGTTTGATTGTATGGCGCCTCTGTTTACATCAACTCCATGTTTATTAATAATGTGACCATTTCACTCGTTCATTCACATGAATTAAACATTAAAACTAGATTTCATGTTATATGTTTCAAGGTTTTGACTGGTTTTCTTTTGGAGATGAGATTTGTTCATTTTCGTTTTTCATCGGCATTTCTAATTTATTGAAGAAGTCTTGTTGGAAACTTTAAAAGTTCAAATTTTGTGCCTCTTTATTGTCTCAAACGCGACATACTAATAAGTAATAATAATAAAAGAAACTGTTTACATCTATTCAGAGGCATTTAGATGAGACATGAGAGAGTTTCATCGGGTTCGTCAATTTCCATGCAATGTTATTTGTTTTTTAGATTAAATATGTGAAAAATTACAGCATGTAAGCACATGAAACATAGACAGCCTTATGTACCTTGATCGGTGAATTGTATAGAATATGAATTTGGTTGTGTAATAAGAATAACGTATCTTTTGGTTGTATTCTTTTGCAATCGCCAGGCAAAGGCCAAGTCACATGCAAAAGCTGAAGCCAAGGCCCATCATTGATGAACACATTTACTGATGTAGCTTGTAGCGATGGAAGAGATGGCAATTACCGCATAGGGAGAGACTCTGATCATTGGTTGGAGAAATGTGATTTTTGGCTTCATAATTTAGTAGATTCTGTTCTTTTACTGCTGAAACAAAAGAAAATTTTCTTTGTTTAGACGAGGTTGGTATTGCGAATACTGTATGGTGTATGCTTAGTTTTTCGGTTCCAGTTGGCAATTCTGCCTGTGAGAAGGATGTTCTTGAAATAAAGGCGATACACCATCCTGATAAATAAGACTCGTTTGAGATTTTTGTCCATCATGATACTTCTCTCGTTTACTTTAGAGTTTCAACTTTTGATTGGCTTTGATCTTTCTAAC ATGAACGACTTGAGTGATGGCTTTTTAATCGGCGACCAGACGAGACGACTCGACGTCGGACGAAAGGGGTTCACTGATCTACCGTCGCGTCTGGGCAGGGAGGTCATTTACCAAAATTACCCTCGATTAGAGTTCGATATTCGGGCAGACGCACACGTCAGACTGTTAGAATTGATAGGAGGAGACGACTCCAAGCATTTCTGTGTTGTGACTGATAATCATCATTTACATCTAATGGCTCCACCTCCTGGCCCTTACTCCGGCACCAGCACCCTCGCTCTGGTCGCTCGTGCATCAGCATTCACCTTTGGTTTGGTTTACGGAAGCATTAAGCTCAAGGTTCTGAAGGCAAAGGCCAAGTCACATGCAAAAGCTGAAGCCAAGGCCCATCATTGATGAACACATTTACTGATGTAGCTTGTAGCGATGGAAGAGATGGCAATTACCGCATAGGGAGAGACTCTGATCATTGGTTGGAGAAATGTGATTTTTGGCTTCATAATTTAGTAGATTCTGTTCTTTTACTGCTGAAACAAAAGAAAATTTTCTTTGTTTAGACGAGGTTGGTATTGCGAATACTGTATGGTGTATGCTTAGTTTTTCGGTTCCAGTTGGCAATTCTGCCTGTGAGAAGGATGTTCTTGAAATAAAGGCGATACACCATCCTGATAAATAAGACTCGTTTGAGATTTTTGTCCATCATGATACTTCTCTCGTTTACTTTAGAGTTTCAACTTTTGATTGGCTTTGATCTTTCTAAC ATGAACGACTTGAGTGATGGCTTTTTAATCGGCGACCAGACGAGACGACTCGACGTCGGACGAAAGGGGTTCACTGATCTACCGTCGCGTCTGGGCAGGGAGGTCATTTACCAAAATTACCCTCGATTAGAGTTCGATATTCGGGCAGACGCACACGTCAGACTGTTAGAATTGATAGGAGGAGACGACTCCAAGCATTTCTGTGTTGTGACTGATAATCATCATTTACATCTAATGGCTCCACCTCCTGGCCCTTACTCCGGCACCAGCACCCTCGCTCTGGTCGCTCGTGCATCAGCATTCACCTTTGGTTTGGTTTACGGAAGCATTAAGCTCAAGGTTCTGAAGGCAAAGGCCAAGTCACATGCAAAAGCTGAAGCCAAGGCCCATCATTGA MNDLSDGFLIGDQTRRLDVGRKGFTDLPSRLGREVIYQNYPRLEFDIRADAHVRLLELIGGDDSKHFCVVTDNHHLHLMAPPPGPYSGTSTLALVARASAFTFGLVYGSIKLKVLKAKAKSHAKAEAKAHH Homology
BLAST of Lsi04G017250 vs. ExPASy TrEMBL
Match: A0A5A7V6P3 (ATP synthase E chain OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G008240 PE=4 SV=1) HSP 1 Score: 104.8 bits (260), Expect = 2.9e-19 Identity = 52/69 (75.36%), Postives = 57/69 (82.61%), Query Frame = 0
BLAST of Lsi04G017250 vs. ExPASy TrEMBL
Match: A0A6J1BT37 (ATP synthase subunit e, mitochondrial OS=Momordica charantia OX=3673 GN=LOC111005275 PE=3 SV=1) HSP 1 Score: 101.7 bits (252), Expect = 2.4e-18 Identity = 52/53 (98.11%), Postives = 53/53 (100.00%), Query Frame = 0
BLAST of Lsi04G017250 vs. ExPASy TrEMBL
Match: A0A1S3CRK7 (uncharacterized protein LOC103503894 OS=Cucumis melo OX=3656 GN=LOC103503894 PE=4 SV=1) HSP 1 Score: 98.6 bits (244), Expect = 2.1e-17 Identity = 51/53 (96.23%), Postives = 52/53 (98.11%), Query Frame = 0
BLAST of Lsi04G017250 vs. ExPASy TrEMBL
Match: A0A0A0LH44 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G866500 PE=4 SV=1) HSP 1 Score: 98.2 bits (243), Expect = 2.7e-17 Identity = 51/53 (96.23%), Postives = 52/53 (98.11%), Query Frame = 0
BLAST of Lsi04G017250 vs. ExPASy TrEMBL
Match: A0A2N9G4U9 (ATP synthase subunit e, mitochondrial OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS25569 PE=3 SV=1) HSP 1 Score: 97.4 bits (241), Expect = 4.6e-17 Identity = 50/53 (94.34%), Postives = 51/53 (96.23%), Query Frame = 0
BLAST of Lsi04G017250 vs. NCBI nr
Match: KAA0063268.1 (ATP synthase E chain [Cucumis melo var. makuwa] >TYK31506.1 ATP synthase E chain [Cucumis melo var. makuwa]) HSP 1 Score: 104.8 bits (260), Expect = 5.9e-19 Identity = 52/69 (75.36%), Postives = 57/69 (82.61%), Query Frame = 0
BLAST of Lsi04G017250 vs. NCBI nr
Match: XP_022132454.1 (uncharacterized protein LOC111005275 [Momordica charantia]) HSP 1 Score: 101.7 bits (252), Expect = 5.0e-18 Identity = 52/53 (98.11%), Postives = 53/53 (100.00%), Query Frame = 0
BLAST of Lsi04G017250 vs. NCBI nr
Match: XP_038898502.1 (uncharacterized protein LOC120086120 [Benincasa hispida]) HSP 1 Score: 99.8 bits (247), Expect = 1.9e-17 Identity = 52/53 (98.11%), Postives = 52/53 (98.11%), Query Frame = 0
BLAST of Lsi04G017250 vs. NCBI nr
Match: XP_008466504.1 (PREDICTED: uncharacterized protein LOC103503894 [Cucumis melo]) HSP 1 Score: 98.6 bits (244), Expect = 4.2e-17 Identity = 51/53 (96.23%), Postives = 52/53 (98.11%), Query Frame = 0
BLAST of Lsi04G017250 vs. NCBI nr
Match: XP_004147837.1 (uncharacterized protein LOC101217057 [Cucumis sativus]) HSP 1 Score: 98.2 bits (243), Expect = 5.5e-17 Identity = 51/53 (96.23%), Postives = 52/53 (98.11%), Query Frame = 0
BLAST of Lsi04G017250 vs. TAIR 10
Match: AT3G01130.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: M germinated pollen stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G15320.1); Has 64 Blast hits to 64 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 64; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 80.1 bits (196), Expect = 1.5e-15 Identity = 42/53 (79.25%), Postives = 44/53 (83.02%), Query Frame = 0
BLAST of Lsi04G017250 vs. TAIR 10
Match: AT5G15320.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G01130.1); Has 64 Blast hits to 64 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 64; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 70.5 bits (171), Expect = 1.2e-12 Identity = 38/53 (71.70%), Postives = 42/53 (79.25%), Query Frame = 0
BLAST of Lsi04G017250 vs. TAIR 10
Match: AT3G01130.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: M germinated pollen stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G15320.1); Has 64 Blast hits to 64 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 64; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 65.1 bits (157), Expect = 4.8e-11 Identity = 33/40 (82.50%), Postives = 35/40 (87.50%), Query Frame = 0
BLAST of Lsi04G017250 vs. TAIR 10
Match: AT5G15320.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G01130.1); Has 64 Blast hits to 64 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 64; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 62.0 bits (149), Expect = 4.1e-10 Identity = 35/53 (66.04%), Postives = 40/53 (75.47%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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