Lsi04G017140 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi04G017140
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	S-type anion channel SLAH4-like
Location	chr04: 24497221 .. 24498663 (+)
RNA-Seq Expression	Lsi04G017140
Synteny	Lsi04G017140

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCATCATCTGCCTCCGAAACTACCATCCTCCAAATGGAGTCACCGGGTAACGTAACCGACGGTTACCAAGAAAACGGCGACGTTTCAAGTCCGGCGGTTGGGATGTTATCGGGGGTGGAGACGATGCTGGTGAAATTTCATGCAGGGTATTTCCGGATAGGAATGTCGGTGGGATGTCAAACGTTACTATGGAAAATCATGGCCGGTAAAAACGAGGATTTGCTTCATCCGACGGTTCTCCTTGTTCTGTGGTCCATGGCTTTCTTTCTTCTATTTTGCCTCTCTGTTTTTTACCTGTTGAGATGCTTGTTTCACTTTCGGTTGGTTCAGTGTGAATTTTTGCATCATGTTGGGGTTAATTACCTTTTCGCCCCTTGGATTTCCTGGTTCCTTTTGCTCCAATCCGCACCCTTTTTACCCCCCCGAGCTACTCTTTACAAGGTGCTTAATTCCTATTATAGCTTATAGTAAATTTAGTACTCAGTTATAAATTTCCCGCCGTTAAAACTCTCTAATTTACTACTATTTCCATTTCAAAATTATGGTTTTTAATAGACACAACAACCAACTCTGACTCCCTTTAGTAATGGTTTTATTTCTTGTTTTTAAAAATTAAAGCTCTCTAAACAATATTTTTATTTATAAGTTCTTTTGGTTACTCACTTTTCACTTAGTTAAAATACTATTTTCGTCTCTATACTTTGAAGTTTGTTTTATTTTAATTTTTATACTTTCAATTGTCCAATTTTAATCTCTATACTATCAATAAATCTTAAATTTAATCTCTAATGCTAGGTTATTGTTCATATCTTATTTTCTTGCATGAAAATTATGATTATTATTTAATCAATTTCGGTTAAAATTAAATTTGAGATAGTAAATTTAAAATTTATTAAAAGTATGAGGACCAAAATTGGACAATTGAAAGTATAGAGACTAAAAGTGAACAAACTTTAAAGATTATAATGATATTTTAACTTAAATAAAATTGTTATTATTTGTTTATTATTTTTTGTTATTGAAAATTAAGCTCATAAACTTTATTTTTATCTCTAAATTCGTATGTTATATTGGGATTTGTGAACAGGTATTGTGGTGGGTATTTGCGATACCAGTAGTGGTACTGGACGTGAAAATATATGGCCAATGGTTCACAAAAGGAAGGAGATTTTTGTGCAGTGTTGCGAATCCGACGAGCCAACTGTCGGTGATCGGAAACTTGGTGGGGGCTCAGGCGGCGGGCCGGATGGGGTGGAAGGAGAGCGCATTGTGCTTGTTTTCGCTGGGGATCGTTCATTATTTAGTGCTGTTTGTGACGCTTTATCAACGGTTCTCCGGCGTGGATCGGCTGCCGTCCATGCTCCGACCGGTGTTCTTTCTTTACATAGCAGCCCCAAGCTTCGCGAGCTTGGCTTGGGAATCCATAACTGGGGCCTTTGA

mRNA sequence

ATGGCATCATCTGCCTCCGAAACTACCATCCTCCAAATGGAGTCACCGGGTAACGTAACCGACGGTTACCAAGAAAACGGCGACGTTTCAAGTCCGGCGGTTGGGATGTTATCGGGGGTGGAGACGATGCTGGTGAAATTTCATGCAGGGTATTTCCGGATAGGAATGTCGGTGGGATGTCAAACGTTACTATGGAAAATCATGGCCGGTATTGTGGTGGGTATTTGCGATACCAGTAGTGGTACTGGACGTGAAAATATATGGCCAATGGTTCACAAAAGGAAGGAGATTTTTGTGCAGTGTTGCGAATCCGACGAGCCAACTGTCGGTGATCGGAAACTTGGTGGGGGCTCAGGCGGCGGGCCGGATGGGGTGGAAGGAGAGCGCATTGTGCTTGTTTTCGCTGGGGATCGTTCATTATTTAGTGCTGTTTGTGACGCTTTATCAACGGTTCTCCGGCGTGGATCGGCTGCCGTCCATGCTCCGACCGGTGTTCTTTCTTTACATAGCAGCCCCAAGCTTCGCGAGCTTGGCTTGGGAATCCATAACTGGGGCCTTTGA

Coding sequence (CDS)

ATGGCATCATCTGCCTCCGAAACTACCATCCTCCAAATGGAGTCACCGGGTAACGTAACCGACGGTTACCAAGAAAACGGCGACGTTTCAAGTCCGGCGGTTGGGATGTTATCGGGGGTGGAGACGATGCTGGTGAAATTTCATGCAGGGTATTTCCGGATAGGAATGTCGGTGGGATGTCAAACGTTACTATGGAAAATCATGGCCGGTATTGTGGTGGGTATTTGCGATACCAGTAGTGGTACTGGACGTGAAAATATATGGCCAATGGTTCACAAAAGGAAGGAGATTTTTGTGCAGTGTTGCGAATCCGACGAGCCAACTGTCGGTGATCGGAAACTTGGTGGGGGCTCAGGCGGCGGGCCGGATGGGGTGGAAGGAGAGCGCATTGTGCTTGTTTTCGCTGGGGATCGTTCATTATTTAGTGCTGTTTGTGACGCTTTATCAACGGTTCTCCGGCGTGGATCGGCTGCCGTCCATGCTCCGACCGGTGTTCTTTCTTTACATAGCAGCCCCAAGCTTCGCGAGCTTGGCTTGGGAATCCATAACTGGGGCCTTTGA

Protein sequence

MASSASETTILQMESPGNVTDGYQENGDVSSPAVGMLSGVETMLVKFHAGYFRIGMSVGCQTLLWKIMAGIVVGICDTSSGTGRENIWPMVHKRKEIFVQCCESDEPTVGDRKLGGGSGGGPDGVEGERIVLVFAGDRSLFSAVCDALSTVLRRGSAAVHAPTGVLSLHSSPKLRELGLGIHNWGL

Homology

[Close]

BLAST of Lsi04G017140 vs. ExPASy TrEMBL
Match: A0A5D3E5V8 (S-type anion channel SLAH4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G008380 PE=3 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 8.2e-20
Identity = 56/72 (77.78%), Postives = 60/72 (83.33%), Query Frame = 0


Query: 1  MASSASETTILQMESPGNVTDGYQENGDVSSP---AVGMLSGVETMLVKFHAGYFRIGMS 60
          MA+S SE TILQMESPGN +  Y+ENG VSSP     G+LS VETMLVKFHAGYFRIGMS
Sbjct: 1  MAASVSEITILQMESPGNGSTDYEENGGVSSPPGGGDGILSAVETMLVKFHAGYFRIGMS 60

Query: 61 VGCQTLLWKIMA 70
          VGCQTLLWKIMA
Sbjct: 61 VGCQTLLWKIMA 72

[Close]

BLAST of Lsi04G017140 vs. ExPASy TrEMBL
Match: A0A5A7V8D0 (S-type anion channel SLAH4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold205G00770 PE=3 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 8.2e-20
Identity = 56/72 (77.78%), Postives = 60/72 (83.33%), Query Frame = 0


Query: 1  MASSASETTILQMESPGNVTDGYQENGDVSSP---AVGMLSGVETMLVKFHAGYFRIGMS 60
          MA+S SE TILQMESPGN +  Y+ENG VSSP     G+LS VETMLVKFHAGYFRIGMS
Sbjct: 1  MAASVSEITILQMESPGNGSTDYEENGGVSSPPGGGDGILSAVETMLVKFHAGYFRIGMS 60

Query: 61 VGCQTLLWKIMA 70
          VGCQTLLWKIMA
Sbjct: 61 VGCQTLLWKIMA 72

[Close]

BLAST of Lsi04G017140 vs. ExPASy TrEMBL
Match: A0A1S3CRG8 (S-type anion channel SLAH4-like OS=Cucumis melo OX=3656 GN=LOC103503902 PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 8.2e-20
Identity = 56/72 (77.78%), Postives = 60/72 (83.33%), Query Frame = 0


Query: 1  MASSASETTILQMESPGNVTDGYQENGDVSSP---AVGMLSGVETMLVKFHAGYFRIGMS 60
          MA+S SE TILQMESPGN +  Y+ENG VSSP     G+LS VETMLVKFHAGYFRIGMS
Sbjct: 1  MAASVSEITILQMESPGNGSTDYEENGGVSSPPGGGDGILSAVETMLVKFHAGYFRIGMS 60

Query: 61 VGCQTLLWKIMA 70
          VGCQTLLWKIMA
Sbjct: 61 VGCQTLLWKIMA 72

[Close]

BLAST of Lsi04G017140 vs. ExPASy TrEMBL
Match: A0A0A0LJ39 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G865410 PE=4 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 1.4e-19
Identity = 55/71 (77.46%), Postives = 59/71 (83.10%), Query Frame = 0


Query: 1  MASSASETTILQMESPGNVTDGYQENGDVSSP--AVGMLSGVETMLVKFHAGYFRIGMSV 60
          MASSASE TILQMESPGN + GY+EN   SSP    G+ S VETMLVKFHAGYFRIGMSV
Sbjct: 1  MASSASEITILQMESPGNGSTGYEENSGASSPGDGDGIFSAVETMLVKFHAGYFRIGMSV 60

Query: 61 GCQTLLWKIMA 70
          GCQTLLWKI+A
Sbjct: 61 GCQTLLWKILA 71

[Close]

BLAST of Lsi04G017140 vs. ExPASy TrEMBL
Match: A0A151RQQ8 (Uncharacterized protein OS=Cajanus cajan OX=3821 GN=KK1_033658 PE=4 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 2.4e-19
Identity = 66/182 (36.26%), Postives = 92/182 (50.55%), Query Frame = 0


Query: 1   MASSASETTI-LQMESPGNVTDGYQENGDVSSPAVGMLSGVETMLVKFHAGYFRIGMSVG 60
           MAS  SE+ I L +++  +           S  A   +  + ++L KFHAGYFRI +S G
Sbjct: 1   MASQGSESEIELVVDTTTSRNSVKNRESTSSMVAKRSIMSLNSILTKFHAGYFRISLSFG 60

Query: 61  CQTLLWKIMA-----------------------------GIVVGICDTSSGTGRENIWPM 120
            Q LLWK +                              G VVG+C    G GRE++  +
Sbjct: 61  GQALLWKTLIEPTHDDTNTNTNTTTLLGAVRASQNGDVFGAVVGVCGAGGGAGREDLRAV 120

Query: 121 VHKRKEIFVQCCESDEPTVGDRKLGGGSGGGPDGVEGERIVLVFAGDRSLFSAVCDALST 153
           VH+ +E+ ++C E  EP VGDR+LGGG+     G+EGE   +VFAGD +L   VCDALS 
Sbjct: 121 VHEGEEVSIRCGEPHEPDVGDRELGGGTRRRAYGLEGECGWVVFAGDGALLGLVCDALSA 180

[Close]

BLAST of Lsi04G017140 vs. NCBI nr
Match: XP_038896582.1 (S-type anion channel SLAH4-like [Benincasa hispida])

HSP 1 Score: 109.4 bits (272), Expect = 3.4e-20
Identity = 52/66 (78.79%), Postives = 58/66 (87.88%), Query Frame = 0


Query: 5  ASETTILQMESPGNVTDGYQENGDVSSPAVGMLSGVETMLVKFHAGYFRIGMSVGCQTLL 64
          ASE TILQMESPGN + GYQ++G VSSP  G+ SG ETML+KFHAGYFRIGMSVGCQTLL
Sbjct: 2  ASEITILQMESPGNESAGYQQDGSVSSPGDGIFSGAETMLMKFHAGYFRIGMSVGCQTLL 61

Query: 65 WKIMAG 71
          WKI+AG
Sbjct: 62 WKILAG 67

[Close]

BLAST of Lsi04G017140 vs. NCBI nr
Match: TYK31517.1 (S-type anion channel SLAH4-like [Cucumis melo var. makuwa])

HSP 1 Score: 107.1 bits (266), Expect = 1.7e-19
Identity = 56/72 (77.78%), Postives = 60/72 (83.33%), Query Frame = 0


Query: 1  MASSASETTILQMESPGNVTDGYQENGDVSSP---AVGMLSGVETMLVKFHAGYFRIGMS 60
          MA+S SE TILQMESPGN +  Y+ENG VSSP     G+LS VETMLVKFHAGYFRIGMS
Sbjct: 1  MAASVSEITILQMESPGNGSTDYEENGGVSSPPGGGDGILSAVETMLVKFHAGYFRIGMS 60

Query: 61 VGCQTLLWKIMA 70
          VGCQTLLWKIMA
Sbjct: 61 VGCQTLLWKIMA 72

[Close]

BLAST of Lsi04G017140 vs. NCBI nr
Match: XP_008466511.1 (PREDICTED: S-type anion channel SLAH4-like [Cucumis melo])

HSP 1 Score: 107.1 bits (266), Expect = 1.7e-19
Identity = 56/72 (77.78%), Postives = 60/72 (83.33%), Query Frame = 0


Query: 1  MASSASETTILQMESPGNVTDGYQENGDVSSP---AVGMLSGVETMLVKFHAGYFRIGMS 60
          MA+S SE TILQMESPGN +  Y+ENG VSSP     G+LS VETMLVKFHAGYFRIGMS
Sbjct: 1  MAASVSEITILQMESPGNGSTDYEENGGVSSPPGGGDGILSAVETMLVKFHAGYFRIGMS 60

Query: 61 VGCQTLLWKIMA 70
          VGCQTLLWKIMA
Sbjct: 61 VGCQTLLWKIMA 72

[Close]

BLAST of Lsi04G017140 vs. NCBI nr
Match: KAA0063257.1 (S-type anion channel SLAH4-like [Cucumis melo var. makuwa])

HSP 1 Score: 107.1 bits (266), Expect = 1.7e-19
Identity = 56/72 (77.78%), Postives = 60/72 (83.33%), Query Frame = 0


Query: 1  MASSASETTILQMESPGNVTDGYQENGDVSSP---AVGMLSGVETMLVKFHAGYFRIGMS 60
          MA+S SE TILQMESPGN +  Y+ENG VSSP     G+LS VETMLVKFHAGYFRIGMS
Sbjct: 1  MAASVSEITILQMESPGNGSTDYEENGGVSSPPGGGDGILSAVETMLVKFHAGYFRIGMS 60

Query: 61 VGCQTLLWKIMA 70
          VGCQTLLWKIMA
Sbjct: 61 VGCQTLLWKIMA 72

[Close]

BLAST of Lsi04G017140 vs. NCBI nr
Match: XP_004147871.1 (S-type anion channel SLAH4 [Cucumis sativus] >KAE8651337.1 hypothetical protein Csa_001746 [Cucumis sativus])

HSP 1 Score: 106.3 bits (264), Expect = 2.9e-19
Identity = 55/71 (77.46%), Postives = 59/71 (83.10%), Query Frame = 0


Query: 1  MASSASETTILQMESPGNVTDGYQENGDVSSP--AVGMLSGVETMLVKFHAGYFRIGMSV 60
          MASSASE TILQMESPGN + GY+EN   SSP    G+ S VETMLVKFHAGYFRIGMSV
Sbjct: 1  MASSASEITILQMESPGNGSTGYEENSGASSPGDGDGIFSAVETMLVKFHAGYFRIGMSV 60

Query: 61 GCQTLLWKIMA 70
          GCQTLLWKI+A
Sbjct: 61 GCQTLLWKILA 71

The following BLAST results are available for this feature:

BLAST of Lsi04G017140 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi04G017140 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3E5V8	8.2e-20	77.78	S-type anion channel SLAH4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A5A7V8D0	8.2e-20	77.78	S-type anion channel SLAH4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_...	[more]
A0A1S3CRG8	8.2e-20	77.78	S-type anion channel SLAH4-like OS=Cucumis melo OX=3656 GN=LOC103503902 PE=4 SV=...	[more]
A0A0A0LJ39	1.4e-19	77.46	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G865410 PE=4 SV=1	[more]
A0A151RQQ8	2.4e-19	36.26	Uncharacterized protein OS=Cajanus cajan OX=3821 GN=KK1_033658 PE=4 SV=1	[more]

BLAST of Lsi04G017140 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038896582.1	3.4e-20	78.79	S-type anion channel SLAH4-like [Benincasa hispida]	[more]
TYK31517.1	1.7e-19	77.78	S-type anion channel SLAH4-like [Cucumis melo var. makuwa]	[more]
XP_008466511.1	1.7e-19	77.78	PREDICTED: S-type anion channel SLAH4-like [Cucumis melo]	[more]
KAA0063257.1	1.7e-19	77.78	S-type anion channel SLAH4-like [Cucumis melo var. makuwa]	[more]
XP_004147871.1	2.9e-19	77.46	S-type anion channel SLAH4 [Cucumis sativus] >KAE8651337.1 hypothetical protein ...	[more]

BLAST of Lsi04G017140 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..25

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi04G017140.1	Lsi04G017140.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006873	cellular ion homeostasis
biological_process	GO:0015698	inorganic anion transport
biological_process	GO:0034220	ion transmembrane transport
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005886	plasma membrane
molecular_function	GO:0008308	voltage-gated anion channel activity