Lsi04G017060 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi04G017060
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Thioredoxin
Location	chr04: 24424625 .. 24425783 (-)
RNA-Seq Expression	Lsi04G017060
Synteny	Lsi04G017060

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTTAGCCAAGATGGAAATGCTTACCTAGTTGCGTACCGCGTAGTGTAAACCGCATAATCTGATGCTGTTCTCTTTTCGCTTACCTTAGTTGTATTTGGTCTGTCCTAACGCACTTCCATCGTCAACCCTTTGCAGAAAAATTGTTCAGATTCTTGAAGATGACAAAGTGGGAGCTCTCGAAGCTTTCCGAATGGTTCGATTTCATATGCACCGCAAATGGGGCTTTCCAATTGCTTCTTCATTTCCTTATTGTCTTCTACTACTTCTACTATAAATGGAGCCATTCAGGTTTGCAGTACTTCAATTTCCTCGTTAGACGACGATCTTACAGGAGAAGAAATTCCAAATTACAACTCTCTTTGCTTTTGTGTTTAAGATAAAAAAAATGGCAGAAAAGAGCGAAGTGATTACGTGCCATACCGTTGGATCATGGAACCAGCAGCTCCTCAAAGGAAAACAATCCGATAAACTGGTATGCTTGATCCGAAATCAACTGATTTCTTCATGTGTTATTCCTCTTCCTTATAAGTGTATTTCTTCCTCTTTCTAAACAATTTTGATTCTACAGATTGTTGTGGACTTCACTGCCGCATGGTGCGGTCCGTGCCGTGCCATCGCTCCAGTTTTTGTAGAGTTGGCTAAGAAGATGAGTAATGTCATATTCTTGAAGGTCGATGTTGATAAATTGACTGTAAGTTGAATCAATTCAAGCTCTCTGCCCTACAAAACTTTTGTAATGTTAATTGAGTTATATTATAAAGACTTCAAACAAATTGAATTATTTTTCTGCAGACTGTTGCTGCGGAATGGGGAGTGAGTGCACTCCCTTGTTTCATGTTCTTGAAGAATGGGAAGGTGGTGAACAGGTTTGTAGGAGCAAGAAAAGATGAATTGCAGAAGCTTGTATTACAACATGCCTAATTTAAGGAGATACTAATACCATCATCTGTTTTTTTGGATTTCTATTAGAACTAGAAAAAGGTTTATGCAACTTTTGTGAGTTGCTATAAATTGATGCTTTTAGTTAGAACAACTTTGATTTTGCTTGTTTTGGATTGTTTTTTAATCATTTTTACTATTTCGAGGCTATCAGACTTGTTATGTAATGAATGAGCATCTATTCTTTTGTTGAATAAAGATGAGCACCTATTCAAAGTT

mRNA sequence

ATTTAGCCAAGATGGAAATGCTTACCTAGTTGCGTACCGCGTAGTGTAAACCGCATAATCTGATGCTGTTCTCTTTTCGCTTACCTTAGTTGTATTTGGTCTGTCCTAACGCACTTCCATCGTCAACCCTTTGCAGAAAAATTGTTCAGATTCTTGAAGATGACAAAGTGGGAGCTCTCGAAGCTTTCCGAATGGTTCGATTTCATATGCACCGCAAATGGGGCTTTCCAATTGCTTCTTCATTTCCTTATTGTCTTCTACTACTTCTACTATAAATGGAGCCATTCAGAAAAGAGCGAAGTGATTACGTGCCATACCGTTGGATCATGGAACCAGCAGCTCCTCAAAGGAAAACAATCCGATAAACTGATTGTTGTGGACTTCACTGCCGCATGGTGCGGTCCGTGCCGTGCCATCGCTCCAGTTTTTGTAGAGTTGGCTAAGAAGATGAGTAATGTCATATTCTTGAAGGTCGATGTTGATAAATTGACTACTGTTGCTGCGGAATGGGGAGTGAGTGCACTCCCTTGTTTCATGTTCTTGAAGAATGGGAAGGTGGTGAACAGGTTTGTAGGAGCAAGAAAAGATGAATTGCAGAAGCTTGTATTACAACATGCCTAATTTAAGGAGATACTAATACCATCATCTGTTTTTTTGGATTTCTATTAGAACTAGAAAAAGGTTTATGCAACTTTTGTGAGTTGCTATAAATTGATGCTTTTAGTTAGAACAACTTTGATTTTGCTTGTTTTGGATTGTTTTTTAATCATTTTTACTATTTCGAGGCTATCAGACTTGTTATGTAATGAATGAGCATCTATTCTTTTGTTGAATAAAGATGAGCACCTATTCAAAGTT

Coding sequence (CDS)

ATGACAAAGTGGGAGCTCTCGAAGCTTTCCGAATGGTTCGATTTCATATGCACCGCAAATGGGGCTTTCCAATTGCTTCTTCATTTCCTTATTGTCTTCTACTACTTCTACTATAAATGGAGCCATTCAGAAAAGAGCGAAGTGATTACGTGCCATACCGTTGGATCATGGAACCAGCAGCTCCTCAAAGGAAAACAATCCGATAAACTGATTGTTGTGGACTTCACTGCCGCATGGTGCGGTCCGTGCCGTGCCATCGCTCCAGTTTTTGTAGAGTTGGCTAAGAAGATGAGTAATGTCATATTCTTGAAGGTCGATGTTGATAAATTGACTACTGTTGCTGCGGAATGGGGAGTGAGTGCACTCCCTTGTTTCATGTTCTTGAAGAATGGGAAGGTGGTGAACAGGTTTGTAGGAGCAAGAAAAGATGAATTGCAGAAGCTTGTATTACAACATGCCTAA

Protein sequence

MTKWELSKLSEWFDFICTANGAFQLLLHFLIVFYYFYYKWSHSEKSEVITCHTVGSWNQQLLKGKQSDKLIVVDFTAAWCGPCRAIAPVFVELAKKMSNVIFLKVDVDKLTTVAAEWGVSALPCFMFLKNGKVVNRFVGARKDELQKLVLQHA

Homology

[Close]

BLAST of Lsi04G017060 vs. ExPASy Swiss-Prot
Match: P29448 (Thioredoxin H1 OS=Arabidopsis thaliana OX=3702 GN=TRX1 PE=1 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 4.5e-37
Identity = 65/110 (59.09%), Postives = 88/110 (80.00%), Query Frame = 0


Query: 43  SEKSEVITCHTVGSWNQQLLKGKQSDKLIVVDFTAAWCGPCRAIAPVFVELAKKMSNVIF 102
           SE+ +VI CHTV +WN+QL K  +S  L+VVDFTA+WCGPCR IAP F +LAKK+ NV+F
Sbjct: 3   SEEGQVIACHTVETWNEQLQKANESKTLVVVDFTASWCGPCRFIAPFFADLAKKLPNVLF 62

Query: 103 LKVDVDKLTTVAAEWGVSALPCFMFLKNGKVVNRFVGARKDELQKLVLQH 153
           LKVD D+L +VA++W + A+P FMFLK GK++++ VGA+KDELQ  + +H
Sbjct: 63  LKVDTDELKSVASDWAIQAMPTFMFLKEGKILDKVVGAKKDELQSTIAKH 112

[Close]

BLAST of Lsi04G017060 vs. ExPASy Swiss-Prot
Match: Q43636 (Thioredoxin H-type OS=Ricinus communis OX=3988 PE=3 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 1.0e-36
Identity = 68/110 (61.82%), Postives = 87/110 (79.09%), Query Frame = 0


Query: 43  SEKSEVITCHTVGSWNQQLLKGKQSDKLIVVDFTAAWCGPCRAIAPVFVELAKKMSNVIF 102
           +E+ +VI CHTV +WN+QL KG  +  LIVVDFTA+WCGPCR IAP   ELAKK+ NV F
Sbjct: 3   AEEGQVIGCHTVEAWNEQLQKGNDTKGLIVVDFTASWCGPCRFIAPFLAELAKKLPNVTF 62

Query: 103 LKVDVDKLTTVAAEWGVSALPCFMFLKNGKVVNRFVGARKDELQKLVLQH 153
           LKVDVD+L TVA EW V ++P FMFLK GK++++ VGA+KDELQ+ + +H
Sbjct: 63  LKVDVDELKTVAHEWAVESMPTFMFLKEGKIMDKVVGAKKDELQQTIAKH 112

[Close]

BLAST of Lsi04G017060 vs. ExPASy Swiss-Prot
Match: P29449 (Thioredoxin H-type 1 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 152.1 bits (383), Expect = 5.0e-36
Identity = 65/111 (58.56%), Postives = 89/111 (80.18%), Query Frame = 0


Query: 43  SEKSEVITCHTVGSWNQQLLKGKQSDKLIVVDFTAAWCGPCRAIAPVFVELAKKMSNVIF 102
           SE+ +V  CH V  WN+   KG ++ KL+VVDFTA+WCGPCR IAP+  ++AKKM +VIF
Sbjct: 9   SEEGQVFGCHKVEEWNEYFKKGVETKKLVVVDFTASWCGPCRFIAPILADIAKKMPHVIF 68

Query: 103 LKVDVDKLTTVAAEWGVSALPCFMFLKNGKVVNRFVGARKDELQKLVLQHA 154
           LKVDVD+L TV+AEW V A+P F+F+K+GK V+R VGA+K+ELQ+ +++HA
Sbjct: 69  LKVDVDELKTVSAEWSVEAMPTFVFIKDGKEVDRVVGAKKEELQQTIVKHA 119

[Close]

BLAST of Lsi04G017060 vs. ExPASy Swiss-Prot
Match: Q07090 (Thioredoxin H-type 2 OS=Nicotiana tabacum OX=4097 PE=3 SV=1)

HSP 1 Score: 146.4 bits (368), Expect = 2.7e-34
Identity = 65/110 (59.09%), Postives = 84/110 (76.36%), Query Frame = 0


Query: 43  SEKSEVITCHTVGSWNQQLLKGKQSDKLIVVDFTAAWCGPCRAIAPVFVELAKKMSNVIF 102
           +E+ +VI  HTV +WN+ L KG    KLIVVDFTA+WCGPC+ IA  + ELAKKM  V F
Sbjct: 2   AEEGQVIGVHTVDAWNEHLQKGIDDKKLIVVDFTASWCGPCKFIASFYAELAKKMPTVTF 61

Query: 103 LKVDVDKLTTVAAEWGVSALPCFMFLKNGKVVNRFVGARKDELQKLVLQH 153
           LKVDVD+L +VA +W V A+P FMFLK GK+V++ VGA+KDELQ+ + +H
Sbjct: 62  LKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKDELQQTIAKH 111

[Close]

BLAST of Lsi04G017060 vs. ExPASy Swiss-Prot
Match: Q39239 (Thioredoxin H4 OS=Arabidopsis thaliana OX=3702 GN=TRX4 PE=1 SV=2)

HSP 1 Score: 137.1 bits (344), Expect = 1.7e-31
Identity = 63/111 (56.76%), Postives = 87/111 (78.38%), Query Frame = 0


Query: 43  SEKSEVITCHTVGSWNQQLLKGKQSDKLIVVDFTAAWCGPCRAIAPVFVELAKK-MSNVI 102
           +E+ +VI CHT   W  QL K K+S+KLIV+DFTA+WC PCR IAP+F +LAKK MS+ I
Sbjct: 3   AEEGQVIGCHTNDVWTVQLDKAKESNKLIVIDFTASWCPPCRMIAPIFNDLAKKFMSSAI 62

Query: 103 FLKVDVDKLTTVAAEWGVSALPCFMFLKNGKVVNRFVGARKDELQKLVLQH 153
           F KVDVD+L +VA E+GV A+P F+F+K G+VV++ VGA K++LQ  +++H
Sbjct: 63  FFKVDVDELQSVAKEFGVEAMPTFVFIKAGEVVDKLVGANKEDLQAKIVKH 113

[Close]

BLAST of Lsi04G017060 vs. ExPASy TrEMBL
Match: A0A5A7V9W3 (Thioredoxin OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold556G00080 PE=3 SV=1)

HSP 1 Score: 211.5 bits (537), Expect = 2.5e-51
Identity = 101/111 (90.99%), Postives = 106/111 (95.50%), Query Frame = 0


Query: 43  SEKSEVITCHTVGSWNQQLLKGKQSDKLIVVDFTAAWCGPCRAIAPVFVELAKKMSNVIF 102
           +EKS+VITCHTV SW QQLLKGKQSDKLIVVDFTAAWCGPCRAIAPVFVELA+KMSNVIF
Sbjct: 2   AEKSQVITCHTVQSWKQQLLKGKQSDKLIVVDFTAAWCGPCRAIAPVFVELAEKMSNVIF 61

Query: 103 LKVDVDKLTTVAAEWGVSALPCFMFLKNGKVVNRFVGARKDELQKLVLQHA 154
           LKVDVDKLTTVAAEWGVSALPCFMFLKNG VV+RFVGARKD L+KLVL HA
Sbjct: 62  LKVDVDKLTTVAAEWGVSALPCFMFLKNGNVVDRFVGARKDALRKLVLHHA 112

[Close]

BLAST of Lsi04G017060 vs. ExPASy TrEMBL
Match: A0A1S3CSR4 (Thioredoxin OS=Cucumis melo OX=3656 GN=LOC103503910 PE=3 SV=1)

HSP 1 Score: 211.5 bits (537), Expect = 2.5e-51
Identity = 101/111 (90.99%), Postives = 106/111 (95.50%), Query Frame = 0


Query: 43  SEKSEVITCHTVGSWNQQLLKGKQSDKLIVVDFTAAWCGPCRAIAPVFVELAKKMSNVIF 102
           +EKS+VITCHTV SW QQLLKGKQSDKLIVVDFTAAWCGPCRAIAPVFVELA+KMSNVIF
Sbjct: 2   AEKSQVITCHTVQSWKQQLLKGKQSDKLIVVDFTAAWCGPCRAIAPVFVELAEKMSNVIF 61

Query: 103 LKVDVDKLTTVAAEWGVSALPCFMFLKNGKVVNRFVGARKDELQKLVLQHA 154
           LKVDVDKLTTVAAEWGVSALPCFMFLKNG VV+RFVGARKD L+KLVL HA
Sbjct: 62  LKVDVDKLTTVAAEWGVSALPCFMFLKNGNVVDRFVGARKDALRKLVLHHA 112

[Close]

BLAST of Lsi04G017060 vs. ExPASy TrEMBL
Match: A0A6J1IM69 (thioredoxin H-type-like OS=Cucurbita maxima OX=3661 GN=LOC111476523 PE=4 SV=1)

HSP 1 Score: 207.6 bits (527), Expect = 3.7e-50
Identity = 99/111 (89.19%), Postives = 102/111 (91.89%), Query Frame = 0


Query: 43  SEKSEVITCHTVGSWNQQLLKGKQSDKLIVVDFTAAWCGPCRAIAPVFVELAKKMSNVIF 102
           +E S VITCHTVGSW QQLLKGKQS+KLIVVDFTAAWCGPCRAIAP F ELAKKMSNVIF
Sbjct: 2   AENSGVITCHTVGSWKQQLLKGKQSNKLIVVDFTAAWCGPCRAIAPAFAELAKKMSNVIF 61

Query: 103 LKVDVDKLTTVAAEWGVSALPCFMFLKNGKVVNRFVGARKDELQKLVLQHA 154
           LKVDVDKL TVAAEWGV ALPCFMFLKNGKVV RFVGARKD LQK+VLQHA
Sbjct: 62  LKVDVDKLNTVAAEWGVGALPCFMFLKNGKVVARFVGARKDALQKIVLQHA 112

[Close]

BLAST of Lsi04G017060 vs. ExPASy TrEMBL
Match: A0A0A0LGF7 (Thioredoxin OS=Cucumis sativus OX=3659 GN=Csa_3G865340 PE=3 SV=1)

HSP 1 Score: 205.7 bits (522), Expect = 1.4e-49
Identity = 98/111 (88.29%), Postives = 104/111 (93.69%), Query Frame = 0


Query: 43  SEKSEVITCHTVGSWNQQLLKGKQSDKLIVVDFTAAWCGPCRAIAPVFVELAKKMSNVIF 102
           +EKS+VI CHTV SW QQLLKGKQ DKLIVVDFTAAWCGPCRAIAPVFVELA+KMSNVIF
Sbjct: 2   AEKSQVIACHTVESWKQQLLKGKQFDKLIVVDFTAAWCGPCRAIAPVFVELAEKMSNVIF 61

Query: 103 LKVDVDKLTTVAAEWGVSALPCFMFLKNGKVVNRFVGARKDELQKLVLQHA 154
           LKVDVDKLTTVAAEWGVSALPCFMFLKNGK+V+RFVGARKD L+KLV  HA
Sbjct: 62  LKVDVDKLTTVAAEWGVSALPCFMFLKNGKMVDRFVGARKDALRKLVSHHA 112

[Close]

BLAST of Lsi04G017060 vs. ExPASy TrEMBL
Match: A0A6J1IZB4 (thioredoxin H1-like OS=Cucurbita maxima OX=3661 GN=LOC111481260 PE=4 SV=1)

HSP 1 Score: 204.9 bits (520), Expect = 2.4e-49
Identity = 96/109 (88.07%), Postives = 103/109 (94.50%), Query Frame = 0


Query: 45  KSEVITCHTVGSWNQQLLKGKQSDKLIVVDFTAAWCGPCRAIAPVFVELAKKMSNVIFLK 104
           K EVI CHTVGSW QQLLKGKQS+KLIVVDFTAAWCGPCRA+APVF ELAKK+SNVIFLK
Sbjct: 4   KGEVIACHTVGSWKQQLLKGKQSNKLIVVDFTAAWCGPCRAMAPVFAELAKKISNVIFLK 63

Query: 105 VDVDKLTTVAAEWGVSALPCFMFLKNGKVVNRFVGARKDELQKLVLQHA 154
           VDVD+L  VAAEWGVSALPCFMFLKNGKVV+RFVGARKD+LQK+VLQHA
Sbjct: 64  VDVDELMAVAAEWGVSALPCFMFLKNGKVVDRFVGARKDQLQKIVLQHA 112

[Close]

BLAST of Lsi04G017060 vs. NCBI nr
Match: XP_038898480.1 (thioredoxin H1-like [Benincasa hispida])

HSP 1 Score: 216.1 bits (549), Expect = 2.1e-52
Identity = 103/110 (93.64%), Postives = 106/110 (96.36%), Query Frame = 0


Query: 44  EKSEVITCHTVGSWNQQLLKGKQSDKLIVVDFTAAWCGPCRAIAPVFVELAKKMSNVIFL 103
           +KSEVITCHTVGSW QQLLKGKQSDKLIVVDFTAAWCGPCRAIAPVF ELA+KMSNVIFL
Sbjct: 10  QKSEVITCHTVGSWKQQLLKGKQSDKLIVVDFTAAWCGPCRAIAPVFAELAEKMSNVIFL 69

Query: 104 KVDVDKLTTVAAEWGVSALPCFMFLKNGKVVNRFVGARKDELQKLVLQHA 154
           KVDVDKLTTVAAEWGVSALPCFMFLKNGKVV RFVGARKD L+KLVLQHA
Sbjct: 70  KVDVDKLTTVAAEWGVSALPCFMFLKNGKVVERFVGARKDALRKLVLQHA 119

[Close]

BLAST of Lsi04G017060 vs. NCBI nr
Match: XP_008466520.1 (PREDICTED: thioredoxin H-type-like [Cucumis melo] >KAA0063226.1 thioredoxin H-type-like [Cucumis melo var. makuwa] >TYK13476.1 thioredoxin H-type-like [Cucumis melo var. makuwa])

HSP 1 Score: 211.5 bits (537), Expect = 5.3e-51
Identity = 101/111 (90.99%), Postives = 106/111 (95.50%), Query Frame = 0


Query: 43  SEKSEVITCHTVGSWNQQLLKGKQSDKLIVVDFTAAWCGPCRAIAPVFVELAKKMSNVIF 102
           +EKS+VITCHTV SW QQLLKGKQSDKLIVVDFTAAWCGPCRAIAPVFVELA+KMSNVIF
Sbjct: 2   AEKSQVITCHTVQSWKQQLLKGKQSDKLIVVDFTAAWCGPCRAIAPVFVELAEKMSNVIF 61

Query: 103 LKVDVDKLTTVAAEWGVSALPCFMFLKNGKVVNRFVGARKDELQKLVLQHA 154
           LKVDVDKLTTVAAEWGVSALPCFMFLKNG VV+RFVGARKD L+KLVL HA
Sbjct: 62  LKVDVDKLTTVAAEWGVSALPCFMFLKNGNVVDRFVGARKDALRKLVLHHA 112

[Close]

BLAST of Lsi04G017060 vs. NCBI nr
Match: KAG6591291.1 (hypothetical protein SDJN03_13637, partial [Cucurbita argyrosperma subsp. sororia] >KAG7024175.1 hypothetical protein SDJN02_12989 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 210.7 bits (535), Expect = 9.0e-51
Identity = 101/111 (90.99%), Postives = 104/111 (93.69%), Query Frame = 0


Query: 43  SEKSEVITCHTVGSWNQQLLKGKQSDKLIVVDFTAAWCGPCRAIAPVFVELAKKMSNVIF 102
           +E S VITCHTVGSW QQLLKGKQS+KLIVVDFTAAWCGPCRAIAPVF ELAKKMSNVIF
Sbjct: 2   AENSGVITCHTVGSWKQQLLKGKQSNKLIVVDFTAAWCGPCRAIAPVFAELAKKMSNVIF 61

Query: 103 LKVDVDKLTTVAAEWGVSALPCFMFLKNGKVVNRFVGARKDELQKLVLQHA 154
           LKVDVDKL TVAAEWGVSALPCFMFLKNGKVV RFVGARKD LQK+VLQHA
Sbjct: 62  LKVDVDKLNTVAAEWGVSALPCFMFLKNGKVVARFVGARKDALQKIVLQHA 112

[Close]

BLAST of Lsi04G017060 vs. NCBI nr
Match: XP_022975984.1 (thioredoxin H-type-like [Cucurbita maxima] >XP_022975985.1 thioredoxin H-type-like [Cucurbita maxima])

HSP 1 Score: 207.6 bits (527), Expect = 7.6e-50
Identity = 99/111 (89.19%), Postives = 102/111 (91.89%), Query Frame = 0


Query: 43  SEKSEVITCHTVGSWNQQLLKGKQSDKLIVVDFTAAWCGPCRAIAPVFVELAKKMSNVIF 102
           +E S VITCHTVGSW QQLLKGKQS+KLIVVDFTAAWCGPCRAIAP F ELAKKMSNVIF
Sbjct: 2   AENSGVITCHTVGSWKQQLLKGKQSNKLIVVDFTAAWCGPCRAIAPAFAELAKKMSNVIF 61

Query: 103 LKVDVDKLTTVAAEWGVSALPCFMFLKNGKVVNRFVGARKDELQKLVLQHA 154
           LKVDVDKL TVAAEWGV ALPCFMFLKNGKVV RFVGARKD LQK+VLQHA
Sbjct: 62  LKVDVDKLNTVAAEWGVGALPCFMFLKNGKVVARFVGARKDALQKIVLQHA 112

[Close]

BLAST of Lsi04G017060 vs. NCBI nr
Match: XP_004147847.1 (thioredoxin H-type [Cucumis sativus] >KGN59999.1 hypothetical protein Csa_001620 [Cucumis sativus])

HSP 1 Score: 205.7 bits (522), Expect = 2.9e-49
Identity = 98/111 (88.29%), Postives = 104/111 (93.69%), Query Frame = 0


Query: 43  SEKSEVITCHTVGSWNQQLLKGKQSDKLIVVDFTAAWCGPCRAIAPVFVELAKKMSNVIF 102
           +EKS+VI CHTV SW QQLLKGKQ DKLIVVDFTAAWCGPCRAIAPVFVELA+KMSNVIF
Sbjct: 2   AEKSQVIACHTVESWKQQLLKGKQFDKLIVVDFTAAWCGPCRAIAPVFVELAEKMSNVIF 61

Query: 103 LKVDVDKLTTVAAEWGVSALPCFMFLKNGKVVNRFVGARKDELQKLVLQHA 154
           LKVDVDKLTTVAAEWGVSALPCFMFLKNGK+V+RFVGARKD L+KLV  HA
Sbjct: 62  LKVDVDKLTTVAAEWGVSALPCFMFLKNGKMVDRFVGARKDALRKLVSHHA 112

[Close]

BLAST of Lsi04G017060 vs. TAIR 10
Match: AT3G51030.1 (thioredoxin H-type 1 )

HSP 1 Score: 155.6 bits (392), Expect = 3.2e-38
Identity = 65/110 (59.09%), Postives = 88/110 (80.00%), Query Frame = 0


Query: 43  SEKSEVITCHTVGSWNQQLLKGKQSDKLIVVDFTAAWCGPCRAIAPVFVELAKKMSNVIF 102
           SE+ +VI CHTV +WN+QL K  +S  L+VVDFTA+WCGPCR IAP F +LAKK+ NV+F
Sbjct: 3   SEEGQVIACHTVETWNEQLQKANESKTLVVVDFTASWCGPCRFIAPFFADLAKKLPNVLF 62

Query: 103 LKVDVDKLTTVAAEWGVSALPCFMFLKNGKVVNRFVGARKDELQKLVLQH 153
           LKVD D+L +VA++W + A+P FMFLK GK++++ VGA+KDELQ  + +H
Sbjct: 63  LKVDTDELKSVASDWAIQAMPTFMFLKEGKILDKVVGAKKDELQSTIAKH 112

[Close]

BLAST of Lsi04G017060 vs. TAIR 10
Match: AT1G19730.1 (Thioredoxin superfamily protein )

HSP 1 Score: 137.1 bits (344), Expect = 1.2e-32
Identity = 63/111 (56.76%), Postives = 87/111 (78.38%), Query Frame = 0


Query: 43  SEKSEVITCHTVGSWNQQLLKGKQSDKLIVVDFTAAWCGPCRAIAPVFVELAKK-MSNVI 102
           +E+ +VI CHT   W  QL K K+S+KLIV+DFTA+WC PCR IAP+F +LAKK MS+ I
Sbjct: 3   AEEGQVIGCHTNDVWTVQLDKAKESNKLIVIDFTASWCPPCRMIAPIFNDLAKKFMSSAI 62

Query: 103 FLKVDVDKLTTVAAEWGVSALPCFMFLKNGKVVNRFVGARKDELQKLVLQH 153
           F KVDVD+L +VA E+GV A+P F+F+K G+VV++ VGA K++LQ  +++H
Sbjct: 63  FFKVDVDELQSVAKEFGVEAMPTFVFIKAGEVVDKLVGANKEDLQAKIVKH 113

[Close]

BLAST of Lsi04G017060 vs. TAIR 10
Match: AT1G45145.1 (thioredoxin H-type 5 )

HSP 1 Score: 137.1 bits (344), Expect = 1.2e-32
Identity = 57/108 (52.78%), Postives = 82/108 (75.93%), Query Frame = 0


Query: 45  KSEVITCHTVGSWNQQLLKGKQSDKLIVVDFTAAWCGPCRAIAPVFVELAKKMSNVIFLK 104
           + EVI CHT+  WN+++    +S KLIV+DFTA+WC PCR IAPVF E+AKK +NV+F K
Sbjct: 4   EGEVIACHTLEVWNEKVKDANESKKLIVIDFTASWCPPCRFIAPVFAEMAKKFTNVVFFK 63

Query: 105 VDVDKLTTVAAEWGVSALPCFMFLKNGKVVNRFVGARKDELQKLVLQH 153
           +DVD+L  VA E+ V A+P F+F+K G +++R VGA KDE+ + +++H
Sbjct: 64  IDVDELQAVAQEFKVEAMPTFVFMKEGNIIDRVVGAAKDEINEKLMKH 111

[Close]

BLAST of Lsi04G017060 vs. TAIR 10
Match: AT5G42980.1 (thioredoxin 3 )

HSP 1 Score: 125.9 bits (315), Expect = 2.7e-29
Identity = 56/101 (55.45%), Postives = 73/101 (72.28%), Query Frame = 0


Query: 45  KSEVITCHTVGSWNQQLLKGKQSDKLIVVDFTAAWCGPCRAIAPVFVELAKKMSNVIFLK 104
           + EVI CHTV  W ++L    +S KLIV+DFTA WC PCR IAPVF +LAKK  +V+F K
Sbjct: 4   EGEVIACHTVEDWTEKLKAANESKKLIVIDFTATWCPPCRFIAPVFADLAKKHLDVVFFK 63

Query: 105 VDVDKLTTVAAEWGVSALPCFMFLKNGKVVNRFVGARKDEL 146
           VDVD+L TVA E+ V A+P F+F+K G++    VGA K+E+
Sbjct: 64  VDVDELNTVAEEFKVQAMPTFIFMKEGEIKETVVGAAKEEI 104

[Close]

BLAST of Lsi04G017060 vs. TAIR 10
Match: AT5G39950.1 (thioredoxin 2 )

HSP 1 Score: 110.9 bits (276), Expect = 9.0e-25
Identity = 50/109 (45.87%), Postives = 74/109 (67.89%), Query Frame = 0


Query: 41  SHSEKSEVITCHTVGSWNQQLLKGKQSDKLIVVDFTAAWCGPCRAIAPVFVELAKKMSNV 100
           + SE S V+   +   W     + K+S+KL+VVDF+A+WCGPCR I P    +A K ++V
Sbjct: 20  TESEPSRVLKFSSSARWQLHFNEIKESNKLLVVDFSASWCGPCRMIEPAIHAMADKFNDV 79

Query: 101 IFLKVDVDKLTTVAAEWGVSALPCFMFLKNGKVVNRFVGARKDELQKLV 150
            F+K+DVD+L  VA E+ V+A+P F+ +K GK + R +GA+KDEL+K V
Sbjct: 80  DFVKLDVDELPDVAKEFNVTAMPTFVLVKRGKEIERIIGAKKDELEKKV 128

The following BLAST results are available for this feature:

BLAST of Lsi04G017060 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P29448	4.5e-37	59.09	Thioredoxin H1 OS=Arabidopsis thaliana OX=3702 GN=TRX1 PE=1 SV=1	[more]
Q43636	1.0e-36	61.82	Thioredoxin H-type OS=Ricinus communis OX=3988 PE=3 SV=1	[more]
P29449	5.0e-36	58.56	Thioredoxin H-type 1 OS=Nicotiana tabacum OX=4097 PE=2 SV=1	[more]
Q07090	2.7e-34	59.09	Thioredoxin H-type 2 OS=Nicotiana tabacum OX=4097 PE=3 SV=1	[more]
Q39239	1.7e-31	56.76	Thioredoxin H4 OS=Arabidopsis thaliana OX=3702 GN=TRX4 PE=1 SV=2	[more]

BLAST of Lsi04G017060 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7V9W3	2.5e-51	90.99	Thioredoxin OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold556G00080 PE...	[more]
A0A1S3CSR4	2.5e-51	90.99	Thioredoxin OS=Cucumis melo OX=3656 GN=LOC103503910 PE=3 SV=1	[more]
A0A6J1IM69	3.7e-50	89.19	thioredoxin H-type-like OS=Cucurbita maxima OX=3661 GN=LOC111476523 PE=4 SV=1	[more]
A0A0A0LGF7	1.4e-49	88.29	Thioredoxin OS=Cucumis sativus OX=3659 GN=Csa_3G865340 PE=3 SV=1	[more]
A0A6J1IZB4	2.4e-49	88.07	thioredoxin H1-like OS=Cucurbita maxima OX=3661 GN=LOC111481260 PE=4 SV=1	[more]

BLAST of Lsi04G017060 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038898480.1	2.1e-52	93.64	thioredoxin H1-like [Benincasa hispida]	[more]
XP_008466520.1	5.3e-51	90.99	PREDICTED: thioredoxin H-type-like [Cucumis melo] >KAA0063226.1 thioredoxin H-ty...	[more]
KAG6591291.1	9.0e-51	90.99	hypothetical protein SDJN03_13637, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022975984.1	7.6e-50	89.19	thioredoxin H-type-like [Cucurbita maxima] >XP_022975985.1 thioredoxin H-type-li...	[more]
XP_004147847.1	2.9e-49	88.29	thioredoxin H-type [Cucumis sativus] >KGN59999.1 hypothetical protein Csa_001620...	[more]

BLAST of Lsi04G017060 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G51030.1	3.2e-38	59.09	thioredoxin H-type 1	[more]
AT1G19730.1	1.2e-32	56.76	Thioredoxin superfamily protein	[more]
AT1G45145.1	1.2e-32	52.78	thioredoxin H-type 5	[more]
AT5G42980.1	2.7e-29	55.45	thioredoxin 3	[more]
AT5G39950.1	9.0e-25	45.87	thioredoxin 2	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PRINTS	PR00421	THIOREDOXIN	coord: 118..129 score: 31.9 coord: 79..88 score: 67.0 coord: 71..79 score: 51.98
None	No IPR available	GENE3D	3.40.30.10	Glutaredoxin	coord: 32..153 e-value: 1.5E-38 score: 133.5
None	No IPR available	PANTHER	PTHR10438:SF431	THIOREDOXIN	coord: 44..153
None	No IPR available	PANTHER	PTHR10438	THIOREDOXIN	coord: 44..153
None	No IPR available	CDD	cd02947	TRX_family	coord: 66..149 e-value: 3.69834E-35 score: 115.733
IPR013766	Thioredoxin domain	PFAM	PF00085	Thioredoxin	coord: 51..149 e-value: 1.7E-28 score: 98.6
IPR013766	Thioredoxin domain	PROSITE	PS51352	THIOREDOXIN_2	coord: 40..153 score: 13.090872
IPR017937	Thioredoxin, conserved site	PROSITE	PS00194	THIOREDOXIN_1	coord: 72..90
IPR036249	Thioredoxin-like superfamily	SUPERFAMILY	52833	Thioredoxin-like	coord: 40..152

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi04G017060.1	Lsi04G017060.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006662	glycerol ether metabolic process
molecular_function	GO:0015035	protein-disulfide reductase activity