Lsi04G016710 (gene) Bottle gourd (USVL1VR-Ls) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.CGTCTCTCTCTCTCTTTTTTCTTCCTTTCTTTTCTGTACTCTCAACTTTTTTCCATCATTTTTTATTCCCATTAATATCACCCACTTCATCTTCTTCCTGCCACCTTCTGATCTCTTTCACTTCTTCCTCTTTGGTTTCACTTCCATGGCGGTGAGTTTTCTTTTTCCTTTTTTTTTTCTCATTAATTTCTTTTCTTTTTCTTCATCTGCACGACCAAACACCCCAGCTCACACTTTTGTTTTGTATTTCATTTCTTCAATAATTATCTATTTTTGTCTTGTTCAGATTCTATTTAAGACTTAATCATCATTAATTTCATACTTTGATACATCAAGAACAATTCACAAGCAAATGAAAACATCTAAAAAAAACAAAGTAGAAACCCATAAAACTTGATCTCTTTCAACCTATTCTTGTCATGGAGCCACAATAGTTCATATGAAGTTTTTGTTTATGTGGTGCTTGAATTTTAAAATGTGTTTAATTAAGTTTCTGAATTTGTTATTCTTTCTGTTTCTAATAAATTAAATTATGCATTTAATAAAGTTCTTAAAATTTCTATATTTGCGTGTAATACTTCCCTGAATTTTTTATTTTATATTTAATTGGTCTTAACCCATTTGAAATTGGTTAAAATTTTGGGCTCTTTTCAAATATAGAAAAATGAGTCAAACTATTTACAAATATAGAAAAAATTTCTAGTATATCACTGATAGATCGCGATAGAATTCTATCACTTTCTATCACTCAGGCGATAGAATTTATTTGCTTGAGCGATAGAAAGCGATAGAATTCTATCGCGGTCCATCACTGATAGACAGTGAAATTTTTCTATATTTGTAAATAGTTTGATATTTTTTCTGTTTATAGTAAGTTCCCTAAAATTTTTATATATCTATTAAATAAAAATTAAAAAAAATGATCATTTTCAAATATAGGAATATAAGTTAAATTATTTATAAATATAGAAATTTTTTACTATCTATCAGTGATAGACCACGATAGAATTATATTACAGTCTATCGCTGAATAAACATTGAAATTTTTCTTTATTTGTTAATAACTTTGATATATTTTTTTTGTAGTAATATTTCTAAAAAAAATAAAAATTTGGGGTCTAATTAACTGCAAATTTAAATTTTGTCTAATAGGAGTGTGGGTAATTTTTTAAAATTCAGAATACTTAGAGACCAATTAGATACAAAATTGAAAGTTAAACAACCTATTAAACATAGACTTTATTTATTTATTAGTATTATTTTAAGTTTAGAAATTTATTGCCATACAAAAGTTAAACTTCATATACTTATTTGAAAGTTATGAGACTACACTTGTAATATTTAACCTTCATAAACATTAAAACAAGAGATATATTTTCTCAAAAGAAAAAGAAAGTTATATATATATATATATATAGTTGAAACTTGAAACACAGGTGGTGGTGGACACTAGGATTTTAGATGGGATGGATGGTTATCAATCTTATTAAGAGTGTGAGGTCCATGATACCATATCAAAGGTTCATCTAAAAACTAATTGGCAATGAGAGAAGTAACCCATCTATCTTATTAAGAGGATAAGATCTCATGATTTTTTCAATGTAGGATCCTCAACTATGGTATCTCTTTTGTGTTCATCATTCTTGGGTTCTATCTCAAAATTAATTGACAATAAGAGAAGTAACTCATCTATTTTCGAAAGTAGAATTCTCAACCTTGACAACTTGAAAGTGATTATGACACTAGCATTCACGGTTTTGTTGGTGCAGGCAGACGGCGAAGGTTCCTCCACCTCCATGACGACCGTGAAGTTTCCGGTTCATGGATTTCAAATGGAGAGTGTTTGGAATGATGGAGTTCATTCCCAAGTCAAAGGGTTCAGGATTGTTTATGCCAGCAAATACATCTGGTCTGTTCATATTGAGTATATTAATAAAGATGGGGAAACGAAATGGGGTCCCATTCATGGCAGACCTGTAAACCCTGACTTTACTAAAAGCGAGGTAGCCCTTTTTTTACGACCTGACTAGTATCTAATAAAAATGTGCTATGTGACAATTTTTTTTTTCAAATTTTATTATTTGTGTGTAAAGAAAAAGGAGCATGAAATTAGTTAGAGCTAAATCATTTAATTATAATCCTATATGATGTTGTTCAGTTTCTTCAATCTACTCTACTCATGATAATTGCAGTTTATTAAGTTTGCTTCTCCCACCGAGTATCTCACTTCAATTCACGGCTCCATAGGCGACAAAAAGATTGATTCGCTGAGTTTTGAAACCAATAAGGGACAAACTTATGGGCCATATGGTGATGATCAGAATGCTACAGAAACCAAATTTTCAATCCCACTCAGACCGGCTAAGATTGTGGGCTTTCATGGCTGGAGTGATAGGGATGGTTTCCTCACAGCAATTGGACTATACGTTCAACCAATTACCGAGTATACTATATTATATATTCTTTCTACATAACGCCAATTATTACGCTGCAACTAATTCTGTACTTTTTTTTTTTTTTAATTGCTATCTCGACTGCACAAGAGATGGGAAGAAAATATATGTATTAGTAAACAAGTTTAATAAGAAGAAGATTTCCCTCATGCAGAACCATGCCCCAGCCCCAGCCCCAGCCCAAGCCTGATCCGCAGCCGCAGCCACAGCCCAAGGCTGATGAGAATTGTTTTAGCTTGGGACAATATGGAAATGAAGATGGGGAATATTGGGTGGAGAATTTTCGAGCAATGAAACGATTGATAATTTGCAGTGATGAGGAGTGGATCATTTCCATACAAATGGATTATGAGGATGAAAATGGGAACATAGTATCGTCCAAGAAGCATGGTGGAGATGGAGGTTCCGAAAATGAGGTTACTACCCCCAAATCCTTCCTAATATATATTTCTAGGGTAATTTATACAAAATAGTAAAATTTTTAAGTAGTTGGGATAGAATTCTAAAATAGTAAAATTTTTAAATAGTTGTGATAGACGCAGATAGAATTCTATCACAGTCTATCGATGATAGAAATTATATAAGTCTATCATCATTGATAGGTATGGATTAATATAATGTAGGTTGTTTTGGAAGATGCAGACGAATATCTTATTACAATTAAAGGATACTATGACAACTCACTTCACTCCGAATCTGATACCAACAAGATTCGCTCGCTGACTGTGATAACCAATAATGCTGCTTATGGGCCATATGGGGTTGAAGATGGAACCGAATTTTCATTCCCAACTAATGCGCGGTTGAAGGTTGTTGGCATTCATGGCAGATCTGATTTGTATCTCAATGCCATTGGACTTAACGTAGTCCGTGTCCGTTCCTATTATTAGAACCTAAGCTACAAAATATTGTTATTTTATTAGTATTATGAAGTTTTATGCATGGAAAATTATTATTATTATGCATGATTTTAAAGCATGTGTGTTATTCAATTTGCAATTAATGATGCTATATATATATATATATATATATATATATATATATATATATATATATATATATATATATGATTCTTAGGTGATACTATATGATATTAATTATAAGTATTTGCTACACATAAAATGTTATGATAATTTGACAATTATTGGAAACTTTACGTTTATTATAAATTAATATCTTGAAATTAAAGGATATGGTCTCTATTATGTTTCAAAAATGGCAAGCATGTCTCAAGAGTTGATTTTTTTTTATCACTGAAGTTGTATATTCATGGTGATTTTCCATTACGCTCATGTTAATTAAATTGCACTTATTTTATCTCTAGTATTTGTGGTTTAATTGTGACTTCATGAATTTAAAACTCTTATAAAAGTATGATCATAAAGTAGGACACATAATTAACGCAAGTGCAAACGTCAAGTAATAGTAATTGTCAAAAGATCGAATATCATCCTCAGGAGATCAAACTCATAGACTAATTTAGCTATTCTAGGAGTTTGTCGACTTTATTTAAGAATTCGAAACAAGATGTGTGATAATTGTAAACTAATAAGAACTAAAAACACAAAGATTGAATTTCAAGAGTAAAAGTATTTCAGAGTGTTGATTTCATTGTTCAATTCATTAAGTCATGCATAGATTCTATGGAATCTTGTGTCATTAAGCAAATTCATAATCAAGCCTAATTTATTCTTAATCTCTTTAAATTAAGTTAAGAAGCATGACATTAAGCAAATTCATAAGCAATTTTTATCATTAACCTAACTATTTTCATCTTTTCTCATTAGCCTAATTGCGTGTCGGTGCTTATAGGTGCCAGAAGTGAGTCGGTGGTTTCAACTTTTGGTAAGTCATTTTTCTTTTAGGAAGAGTTTGGTGAAATAGAGAACTTGAAGATAGTTGATGGGTTTCTTTCATTTTGTTAA CGTCTCTCTCTCTCTTTTTTCTTCCTTTCTTTTCTGTACTCTCAACTTTTTTCCATCATTTTTTATTCCCATTAATATCACCCACTTCATCTTCTTCCTGCCACCTTCTGATCTCTTTCACTTCTTCCTCTTTGGTTTCACTTCCATGGCGGCAGACGGCGAAGGTTCCTCCACCTCCATGACGACCGTGAAGTTTCCGGTTCATGGATTTCAAATGGAGAGTGTTTGGAATGATGGAGTTCATTCCCAAGTCAAAGGGTTCAGGATTTTTGCTTCTCCCACCGAGTATCTCACTTCAATTCACGGCTCCATAGGCGACAAAAAGATTGATTCGCTGAGTTTTGAAACCAATAAGGGACAAACTTATGGGCCATATGGTGATGATCAGAATGCTACAGAAACCAAATTTTCAATCCCACTCAGACCGGCTAAGATTGTGGGCTTTCATGGCTGGAGTGATAGGGATGGTTTCCTCACAGCAATTGGACTATACGTTCAACCAATTACCGAAACCATGCCCCAGCCCCAGCCCCAGCCCAAGCCTGATCCGCAGCCGCAGCCACAGCCCAAGGCTGATGAGAATTGTTTTAGCTTGGGACAATATGGAAATGAAGATGGGGAATATTGGGTGGAGAATTTTCGAGCAATGAAACGATTGATAATTTGCAGTGATGAGGAGTGGATCATTTCCATACAAATGGATTATGAGGATGAAAATGGGAACATAGTATCGTCCAAGAAGCATGGTGGAGATGGAGGATACTATGACAACTCACTTCACTCCGAATCTGATACCAACAAGATTCGCTCGCTGACTGTGATAACCAATAATGCTGCTTATGGGCCATATGGGGTTGAAGATGGAACCGAATTTTCATTCCCAACTAATGCGCGGTTGAAGGTTGTTGGCATTCATGGCAGATCTGATTTGTATCTCAATGCCATTGGACTTAACGAAGAGTTTGGTGAAATAGAGAACTTGAAGATAGTTGATGGGTTTCTTTCATTTTGTTAA ATGGCGGCAGACGGCGAAGGTTCCTCCACCTCCATGACGACCGTGAAGTTTCCGGTTCATGGATTTCAAATGGAGAGTGTTTGGAATGATGGAGTTCATTCCCAAGTCAAAGGGTTCAGGATTTTTGCTTCTCCCACCGAGTATCTCACTTCAATTCACGGCTCCATAGGCGACAAAAAGATTGATTCGCTGAGTTTTGAAACCAATAAGGGACAAACTTATGGGCCATATGGTGATGATCAGAATGCTACAGAAACCAAATTTTCAATCCCACTCAGACCGGCTAAGATTGTGGGCTTTCATGGCTGGAGTGATAGGGATGGTTTCCTCACAGCAATTGGACTATACGTTCAACCAATTACCGAAACCATGCCCCAGCCCCAGCCCCAGCCCAAGCCTGATCCGCAGCCGCAGCCACAGCCCAAGGCTGATGAGAATTGTTTTAGCTTGGGACAATATGGAAATGAAGATGGGGAATATTGGGTGGAGAATTTTCGAGCAATGAAACGATTGATAATTTGCAGTGATGAGGAGTGGATCATTTCCATACAAATGGATTATGAGGATGAAAATGGGAACATAGTATCGTCCAAGAAGCATGGTGGAGATGGAGGATACTATGACAACTCACTTCACTCCGAATCTGATACCAACAAGATTCGCTCGCTGACTGTGATAACCAATAATGCTGCTTATGGGCCATATGGGGTTGAAGATGGAACCGAATTTTCATTCCCAACTAATGCGCGGTTGAAGGTTGTTGGCATTCATGGCAGATCTGATTTGTATCTCAATGCCATTGGACTTAACGAAGAGTTTGGTGAAATAGAGAACTTGAAGATAGTTGATGGGTTTCTTTCATTTTGTTAA MAADGEGSSTSMTTVKFPVHGFQMESVWNDGVHSQVKGFRIFASPTEYLTSIHGSIGDKKIDSLSFETNKGQTYGPYGDDQNATETKFSIPLRPAKIVGFHGWSDRDGFLTAIGLYVQPITETMPQPQPQPKPDPQPQPQPKADENCFSLGQYGNEDGEYWVENFRAMKRLIICSDEEWIISIQMDYEDENGNIVSSKKHGGDGGYYDNSLHSESDTNKIRSLTVITNNAAYGPYGVEDGTEFSFPTNARLKVVGIHGRSDLYLNAIGLNEEFGEIENLKIVDGFLSFC Homology
BLAST of Lsi04G016710 vs. ExPASy Swiss-Prot
Match: P82859 (Agglutinin OS=Castanea crenata OX=103480 PE=1 SV=1) HSP 1 Score: 113.6 bits (283), Expect = 3.7e-24 Identity = 88/253 (34.78%), Postives = 121/253 (47.83%), Query Frame = 0
BLAST of Lsi04G016710 vs. ExPASy Swiss-Prot
Match: P83304 (Mannose/glucose-specific lectin (Fragment) OS=Parkia platycephala OX=185447 PE=1 SV=1) HSP 1 Score: 94.7 bits (234), Expect = 1.8e-18 Identity = 89/260 (34.23%), Postives = 119/260 (45.77%), Query Frame = 0
BLAST of Lsi04G016710 vs. ExPASy Swiss-Prot
Match: C0HLR9 (Mannose/glucose-specific lectin OS=Parkia pendula OX=1905032 PE=1 SV=1) HSP 1 Score: 85.5 bits (210), Expect = 1.1e-15 Identity = 86/260 (33.08%), Postives = 116/260 (44.62%), Query Frame = 0
BLAST of Lsi04G016710 vs. ExPASy Swiss-Prot
Match: Q9LTY2 (Jacalin-related lectin 48 OS=Arabidopsis thaliana OX=3702 GN=JAL48 PE=2 SV=1) HSP 1 Score: 84.0 bits (206), Expect = 3.1e-15 Identity = 69/249 (27.71%), Postives = 107/249 (42.97%), Query Frame = 0
BLAST of Lsi04G016710 vs. ExPASy Swiss-Prot
Match: Q9LTA8 (Jacalin-related lectin 46 OS=Arabidopsis thaliana OX=3702 GN=JAL46 PE=2 SV=1) HSP 1 Score: 78.2 bits (191), Expect = 1.7e-13 Identity = 68/250 (27.20%), Postives = 108/250 (43.20%), Query Frame = 0
BLAST of Lsi04G016710 vs. ExPASy TrEMBL
Match: A0A0A0LDY3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G858120 PE=3 SV=1) HSP 1 Score: 189.1 bits (479), Expect = 2.6e-44 Identity = 131/280 (46.79%), Postives = 164/280 (58.57%), Query Frame = 0
BLAST of Lsi04G016710 vs. ExPASy TrEMBL
Match: A0A1S3CSU0 (jacalin-related lectin 3-like OS=Cucumis melo OX=3656 GN=LOC103503936 PE=3 SV=1) HSP 1 Score: 184.5 bits (467), Expect = 6.3e-43 Identity = 128/280 (45.71%), Postives = 165/280 (58.93%), Query Frame = 0
BLAST of Lsi04G016710 vs. ExPASy TrEMBL
Match: A0A6J1C6X3 (jacalin-related lectin 3-like OS=Momordica charantia OX=3673 GN=LOC111008958 PE=3 SV=1) HSP 1 Score: 183.7 bits (465), Expect = 1.1e-42 Identity = 119/277 (42.96%), Postives = 152/277 (54.87%), Query Frame = 0
BLAST of Lsi04G016710 vs. ExPASy TrEMBL
Match: A0A5A7TE69 (Jacalin-related lectin 3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold242G00580 PE=3 SV=1) HSP 1 Score: 181.8 bits (460), Expect = 4.1e-42 Identity = 121/254 (47.64%), Postives = 155/254 (61.02%), Query Frame = 0
BLAST of Lsi04G016710 vs. ExPASy TrEMBL
Match: A0A1S3CRN3 (agglutinin-like OS=Cucumis melo OX=3656 GN=LOC103503934 PE=3 SV=1) HSP 1 Score: 179.1 bits (453), Expect = 2.6e-41 Identity = 113/250 (45.20%), Postives = 145/250 (58.00%), Query Frame = 0
BLAST of Lsi04G016710 vs. NCBI nr
Match: XP_038898651.1 (jacalin-related lectin 3-like isoform X1 [Benincasa hispida]) HSP 1 Score: 194.5 bits (493), Expect = 1.3e-45 Identity = 131/280 (46.79%), Postives = 164/280 (58.57%), Query Frame = 0
BLAST of Lsi04G016710 vs. NCBI nr
Match: XP_004147880.1 (jacalin-related lectin 3 isoform X1 [Cucumis sativus] >KGN59973.1 hypothetical protein Csa_002668 [Cucumis sativus]) HSP 1 Score: 189.1 bits (479), Expect = 5.3e-44 Identity = 131/280 (46.79%), Postives = 164/280 (58.57%), Query Frame = 0
BLAST of Lsi04G016710 vs. NCBI nr
Match: XP_008466550.1 (PREDICTED: jacalin-related lectin 3-like [Cucumis melo]) HSP 1 Score: 184.5 bits (467), Expect = 1.3e-42 Identity = 128/280 (45.71%), Postives = 165/280 (58.93%), Query Frame = 0
BLAST of Lsi04G016710 vs. NCBI nr
Match: XP_022137535.1 (jacalin-related lectin 3-like [Momordica charantia]) HSP 1 Score: 183.7 bits (465), Expect = 2.2e-42 Identity = 119/277 (42.96%), Postives = 152/277 (54.87%), Query Frame = 0
BLAST of Lsi04G016710 vs. NCBI nr
Match: KAA0041590.1 (jacalin-related lectin 3-like [Cucumis melo var. makuwa] >TYK19666.1 jacalin-related lectin 3-like [Cucumis melo var. makuwa]) HSP 1 Score: 181.8 bits (460), Expect = 8.4e-42 Identity = 121/254 (47.64%), Postives = 155/254 (61.02%), Query Frame = 0
BLAST of Lsi04G016710 vs. TAIR 10
Match: AT1G52110.1 (Mannose-binding lectin superfamily protein ) HSP 1 Score: 87.4 bits (215), Expect = 2.0e-17 Identity = 71/248 (28.63%), Postives = 111/248 (44.76%), Query Frame = 0
BLAST of Lsi04G016710 vs. TAIR 10
Match: AT5G49870.1 (Mannose-binding lectin superfamily protein ) HSP 1 Score: 84.0 bits (206), Expect = 2.2e-16 Identity = 69/249 (27.71%), Postives = 107/249 (42.97%), Query Frame = 0
BLAST of Lsi04G016710 vs. TAIR 10
Match: AT1G19715.1 (Mannose-binding lectin superfamily protein ) HSP 1 Score: 78.6 bits (192), Expect = 9.4e-15 Identity = 50/142 (35.21%), Postives = 76/142 (53.52%), Query Frame = 0
BLAST of Lsi04G016710 vs. TAIR 10
Match: AT1G19715.3 (Mannose-binding lectin superfamily protein ) HSP 1 Score: 78.6 bits (192), Expect = 9.4e-15 Identity = 50/142 (35.21%), Postives = 76/142 (53.52%), Query Frame = 0
BLAST of Lsi04G016710 vs. TAIR 10
Match: AT5G49850.1 (Mannose-binding lectin superfamily protein ) HSP 1 Score: 78.2 bits (191), Expect = 1.2e-14 Identity = 68/250 (27.20%), Postives = 108/250 (43.20%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
Relationships
The following mRNA feature(s) are a part of this gene:
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