Lsi04G016660 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi04G016660
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Descriptionprotein RADIALIS-like 3
Locationchr04: 24095584 .. 24100837 (+)
RNA-Seq ExpressionLsi04G016660
SyntenyLsi04G016660
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAAACGTGAGGGCCCAAAAAAGCAGCTCTAAAATCGGATTTCTAAACTAACTTTCTCGGTTAAAGTTTGAACTTTGAAGGCGTGAGTAGAGTTGCGTCCCATGAAAATCACATTTTACTCCATTCTTTTAGATATAATTTTAAGAGATGCGATTTTATTTTGAAAAATTACTCTAAATAGAAAAAAATATCAAATTATATATAAATTAGAAAAAATTTATTGTCTATATATACCGCGACAGAATTATATTAGTTAAGCGCTCTATATTTGTAAATAATTTACTTATTTTTCTATATTTAAAAACAACCTTTTTATTTTACTCTCTCTATTTTTGTTTAGGTACTTCTTGCTAAATATAAACTTAGTCTACTTCTAGTAAATCTAAAATTAGTTTTTCAAAATAATAATTTTTACACAATATAATTTTTTTTTTATATAAATGTAATTTTCAAGACTATTTTTTTTTTGTTGAGAAAAATAAAAATAAGTCAAGTGGAGTGACTAATTTTAAGATTTATTAAAAACTACCTAAGCTAAAATTAAGATTAAATTACAAAAAATGCCTTTAAATTTTGCAATTTAGGTAAAAAATACCTTTAAACTTTCAAAAATAGTTAAAGAAAAAAATACCCTTACCGTTATTTTTTAATGGAAACGTTAATGTTTTGTTTAAAAAATAACATTAAACTTTCAAAAGTTTCATAAATACCCTCAAACTTACAAAAAAAAAAAAATTAAAAATATCCTTGCTATTAATATATGAACATAAACTATTAATATCTCTTTGCAAAAATACATTTAAACTTTAAAAAATTTACATTAGTATCCTTATCTGTTTTTTTTTTTAATTATTTATCTACGCCCCCATTACCTCCTTTCATTTCCTCTCACACTCCTACTTCAATAACATTTCTATATTCTATCTATTTTTTTGCCCTCTTACTCTTTTTTTATTATTATTTGTCATTTGTTTATCTCATAAAAAAAAAAAAAAACTACCCCTTCAATTAAGGCATATAGACATACCAAAATAATACCTTTCATGATTTGACCAATTATCCAATAAATTCATTAACTCTCCGATTTACATCTAATTAAAAATTGAACTTCCTTTTTATATTTAAACACAAAATTAAAAGTGAGATATTTATTGTACATTTTTTTAACATTTATTTTCTTTAGCAAATATGTAGGTGAGTGAATCAAATTTCTAACCTCAAAAAAGAGATAGCATACCTTTTATGCCACATAAGCTAGACTCTTAATAACTAAGAATTTGTTTGGATTGAATAGATAAAAAAATATTTTTCTAAAAATTCATTTTTATTTAAATTATTTTAATAAAATTTAGTTAAAATACACTTCAAAGTTGTTAAACATTCAATTTTTTTTCTAAAATGGCTTATTTTTAAAATTAAACACGTAAAAAAAGTTTGGATCCCTAACATATTAACAGGGTAAAATTTAAAAATTCTATTAAACTTAGCTTACAACTAAAACTGTAATTTAACTTAAAATGCAAAACCAAATGATCACTTATATGTTTCCAAAAAAGAAAAAAGAAAAAAAAAATCATCTCACCGTGTTTTCCGCGGAAAGCAACAGGTAAAAGGCAAATAAGGTTGAAGCCACTTGCCCCATATTCTCTTCACTAGTATTTAAACATCAGAAATGGCAGCAAAAAATCAACCACTGATCTGAAATTTGATATTGCGATGGGGTCTGGGTCGAATTGGACGGCGAAGCAGAACAAAGTCTTTGAAAATGCTTTAGCCATCTACGACAAAGACACGCCGGAGCGGTGGCACAACCTCGCCAGAGCCGTCGGCGGCAAGACGGCGGAGGAAGTGAAACGCCACTACGAAAGGCTCGTTGAAGATGTCAACAAGATCGAGACCGGCCAGGTTCCTTTCCCTAATTACAGAAGATCCGGACCTGCCGGCAGAGGATTTTGCTTTGTTGACGAAGAACAACGGTAATTAAAACGCCCCACCCCTTTTTTTTTTTTTTTCTTTTTTCTTTTCCAATTATTATTTTTTCGGGTAATGTATTTTTAAAATCGCCCTGTAATTATCGTTTGTTTTCTTGATTAAAACAACAAGATTAGCTGTTTACCACTCAAATTTTTGTTCTCTGTTTTCTAAATGTAGCCAAAGTTTTCCAGAGTATTTCAAAGAAAAACTAATAAAGAAAGTCTGTATACTTGTTTATATTGTTAAAAACCACAAATAAAATAAATGCTAGGATTATGGTATTAAATTCAATTGACATATCGGTATTTTCATCAAATTCAATCGACATTTTCATAATATTTTAAGAAAATTCATTATGAAAAAAAAATAACAAAATCGACTTTGTCATTGATATACACATCTATAAAATTGAGATATTGGCATTTTAAGGACCTGATTGGGAATTATTTTAGAATAACCCACTTTTATCATTTTTAAAATCACCATGATTAAAAATTGCATTCAAAAGTGTAAATTTGAAAATTAAATTGATTTTGAGTGATTTTAAAAGTGACAAACATGCCCTAAATTTTCAGAAGTGTAATGGTTGGTTTTTTAAATTTTTTATAAAATTTAGGTTTAAATCTTATTTTGGTCCCTGAACTTTGAATAATATTCTATTTTGGTCCCTAAACTTTTAAAAATGTCCATTTTAGTCCTTGAACTTTGAATATTGTTTTATTTTGGTCCCTAAACTTTTAAAAATGTTTGTTTAAATACTTGAACTTTTGAAAAATGCTTATTTTAGTTGAATAGTAAGATTTTGTTAACTTAACAAAATGGTGAGGTGACCTGTATTTTTGGATGACTAGGCTACCAAATAAGTTAGCTACAAGTTTCAAGTTTGAACAAGGTGGCAAATTAAGAGAATTTAAAAGACATTTTTAGTTCAAAATTTTGACGTGTTGGTGGTTGATATTTTACTTCATCTTCATCTTGTTCAATACATCTAGAGCCTAGTCATCCAAAAATACAACATTTATTTTAATAGTAGACATTAAAATAAACACTTTTTTAAAGTTTAGAGACTAAAATAGAACAAGGTTCAAAGTTCATGGACTAAAATAAGATTTAAACCTAAAATTTAATTGAGAAACGATTATTTTGAACCACGGCTTTTAAAAGGGTAAATAGCTTGTAAATATGAAGTACAACTACATATATTTTGGTTAACTTAGAGCAAAAGTTAGTGGATTAAGCATTGGGTTAATTAAAATCTATGGATTATTTATTTAAATTATAAATTGTAATATAATTTAATCCAAGTCTATTTTAAGAAGAATTTATTATGATCAATGCAGGATGAGGAGTCTACGATTGCACTGAAGTACGAAATGTGGGAAGACGAGAGTTCTATCTCTCCATTAACTTTTTTCAACTAAAACTTTTAACGTCCAACTACCAAATGTTACTGATATATGAAGGCCAAATGTAGCTAGTTTTTTTCACCCATCTTTATTGTAATTTTTAGTTTTTCATCTTTTATCATTAACCGTTGAAATTTATTTTATATGGAATAAATATCGATACACCAAGGTTTAAGACATAAAACGTGTACTCTCAATCAAAATGATTACATGTTAAAATTTCTCACCTTATATATATTGTTGAATTGAAAAATAATAATAATAATATTTAGGACAGATAAGAGTTATTATTATACTTACAATATTGATTATTAAATTTACTATAGAATTGATTGTTTAAACGTTAGTTAGTATTGTTTGTTAGTTTAAAAAAACGTTAATTTAATTGAAAATACTTGCGCATTTTAAATAGCATACGGAGAAATTTGTCATTGTATATGTAAAATTGAAATTATTTTAACTATGTAGAAATGAAATTTCAACTTGAAATTGGAATTATTAGATTTTAAACTTAAAAAGAAGTTTGGTTAAAAACTTAAATCATAAATGATAGTTCAAATGATTGATTATGTTAATTTTTTAAGTTTAATAATGAAAGAGCGAGAAATTGAACCTTTAACTCTTTAAGTTGTATGAAGTTTTTAACTAGTTAAGATGTGTTTAAGTTAGTATGATTTTTTTAAAAATAAAATATTGACAAAGCAAACCGTAACTCCTAAAATTCATGAAAATTGTATACATATGTTTAACCGTTTAAGTATAAGAGTGTGTTCTTAGTAGTACAGATGAAAAAAAAAAATCTAGTACTACCATAGTACAAACTCTTTCCATTCATTATTTGACACGTTATTAAATAATTTATTTATTTTGTAGACTCCACGTAATTTTAAAATAGTACTCTTATGGCAAACAATGAATGGAGGTAGTATAGAAAATTTTTCATATTACCATAGTCCTAGAAATTTCCTTGTGATACAAATGAGATATAATAAATATAAAAAATTTAAGAACAATCTTATAGTGTACAACTTCAACTTTTACTTGAATTCCATTTATCTCGCTTGCATTGCTTCACAAACTTACACTATAGTCACAAACTTACATTGCTTCATATCAACATTGTGTCACAAACTCATACTATAGTTACTAAAGTAAGCGAAATTTAATTGACAAATAGATATATTAACGATCAAAAGGTCTATGGTTCAAATCACATACTCCTATTATACTAAAAAACTCACAATATAGATTTTTTTTTTAAAAATAAATATTTTATGTATATCCATCAATATTTAGATATTTACATCTATATTTTTGTAAATTCGAGATCATGACATTAGCATGTTAAACCTTACACGATCCAACTCAGCTATCTCCAATATAATTTGGGCCGAAATTGGGAAAAGAGCCCATTTGCATTGAAGCCCGTTTAAGAAAAGCCCACACGAACTGGTTCAAGTCCAGAGACCCGAAAGACTCGAAGATAAAGTTTCGTCCCGCCGAGAGAAGGTAGTGATCGCACCATTCAATATTTCATCAGTTACGAGCTTCAACTTTCAACTGATTGGTGAAGCAGGGAGTCATGGATGCTAATTCGTCTTCGTGTAAGGTGCGGCCCGTTTTCAATCTTTCCTGCTTGCACGGTTGAATTACTTGCCCTTTCCGGCTTTGATGAAACCGAAATCTCTGGATGCGTACTTTCTCTCATGGACGAATCTATCTTTTTCATTTTTCCATCTTCTGCACAATGTGTTAAAGTTCAGGAACTCGTTTCAAATTGTTTGCTCGTTTTTTTTGGCTGTTCATGTGATAAGATTCTTCGAGTCTGCTTTCGTGGAATCGGCATGTCGATTGCGGACACCGATATATAG

mRNA sequence

ATGGGAAACCAAATATGTAGAAATGGCAGCAAAAAATCAACCACTGATCTGAAATTTGATATTGCGATGGGGTCTGGGTCGAATTGGACGGCGAAGCAGAACAAAGTCTTTGAAAATGCTTTAGCCATCTACGACAAAGACACGCCGGAGCGGTGGCACAACCTCGCCAGAGCCGTCGGCGGCAAGACGGCGGAGGAAGTGAAACGCCACTACGAAAGGCTCGTTGAAGATGTCAACAAGATCGAGACCGGCCAGGTTCCTTTCCCTAATTACAGAAGATCCGGACCTGCCGGCAGAGGATTTTGCTTTGTTGACGAAGAACAACGCCAAAGTTTTCCAGAGTATTTCAAAGAAAAACTAATAAAGAAAGATGAGGAGTCTACGATTGCACTGAAGTACGAAATGTGGGAAGACGAGAAGCCCATTTGCATTGAAGCCCGTTTAAGAAAAGCCCACACGAACTGGTTCAAGTCCAGAGACCCGAAAGACTCGAAGATAAAGTTTCGTCCCGCCGAGAGAAGGGAGTCATGGATGCTAATTCGTCTTCGTGTAAGGTGCGGCCCGTTTTCAATCTTTCCTGCTTGCACGGTTGAATTACTTGCCCTTTCCGGCTTTGATGAAACCGAAATCTCTGGATGCGTACTTTCTCTCATGGACGAATCTATCTTTTTCATTTTTCCATCTTCTGCACAATGTGTTAAAGTTCAGGAACTCGTTTCAAATTGTTTGCTCGTTTTTTTTGGCTGTTCATGTGATAAGATTCTTCGAGTCTGCTTTCGTGGAATCGGCATGTCGATTGCGGACACCGATATATAG

Coding sequence (CDS)

ATGGGAAACCAAATATGTAGAAATGGCAGCAAAAAATCAACCACTGATCTGAAATTTGATATTGCGATGGGGTCTGGGTCGAATTGGACGGCGAAGCAGAACAAAGTCTTTGAAAATGCTTTAGCCATCTACGACAAAGACACGCCGGAGCGGTGGCACAACCTCGCCAGAGCCGTCGGCGGCAAGACGGCGGAGGAAGTGAAACGCCACTACGAAAGGCTCGTTGAAGATGTCAACAAGATCGAGACCGGCCAGGTTCCTTTCCCTAATTACAGAAGATCCGGACCTGCCGGCAGAGGATTTTGCTTTGTTGACGAAGAACAACGCCAAAGTTTTCCAGAGTATTTCAAAGAAAAACTAATAAAGAAAGATGAGGAGTCTACGATTGCACTGAAGTACGAAATGTGGGAAGACGAGAAGCCCATTTGCATTGAAGCCCGTTTAAGAAAAGCCCACACGAACTGGTTCAAGTCCAGAGACCCGAAAGACTCGAAGATAAAGTTTCGTCCCGCCGAGAGAAGGGAGTCATGGATGCTAATTCGTCTTCGTGTAAGGTGCGGCCCGTTTTCAATCTTTCCTGCTTGCACGGTTGAATTACTTGCCCTTTCCGGCTTTGATGAAACCGAAATCTCTGGATGCGTACTTTCTCTCATGGACGAATCTATCTTTTTCATTTTTCCATCTTCTGCACAATGTGTTAAAGTTCAGGAACTCGTTTCAAATTGTTTGCTCGTTTTTTTTGGCTGTTCATGTGATAAGATTCTTCGAGTCTGCTTTCGTGGAATCGGCATGTCGATTGCGGACACCGATATATAG

Protein sequence

MGNQICRNGSKKSTTDLKFDIAMGSGSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTAEEVKRHYERLVEDVNKIETGQVPFPNYRRSGPAGRGFCFVDEEQRQSFPEYFKEKLIKKDEESTIALKYEMWEDEKPICIEARLRKAHTNWFKSRDPKDSKIKFRPAERRESWMLIRLRVRCGPFSIFPACTVELLALSGFDETEISGCVLSLMDESIFFIFPSSAQCVKVQELVSNCLLVFFGCSCDKILRVCFRGIGMSIADTDI
Homology
[Close]
BLAST of Lsi04G016660 vs. ExPASy Swiss-Prot
Match: F4JVB8 (Protein RADIALIS-like 1 OS=Arabidopsis thaliana OX=3702 GN=RL1 PE=2 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 3.1e-25
Identity = 53/87 (60.92%), Postives = 64/87 (73.56%), Query Frame = 0 

Query: 25  SGSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTAEEVKRHYERLVEDVNKIETG 84
           S  +WTAKQNK FE ALA YD+DTP RW N+A+ VGGKT EEVKRHYE LV+D+N IE G
Sbjct: 10  SSGSWTAKQNKAFEQALATYDQDTPNRWQNVAKVVGGKTTEEVKRHYELLVQDINSIENG 69

Query: 85  QVPFPNYRRSGPAGRGFCFVDEEQRQS 112
            VPFPNYR SG    G    +E++ ++
Sbjct: 70  HVPFPNYRTSGGCTNGRLSQEEKRMRN 96

[Close]
BLAST of Lsi04G016660 vs. ExPASy Swiss-Prot
Match: Q6NNN0 (Protein RADIALIS-like 3 OS=Arabidopsis thaliana OX=3702 GN=RL3 PE=2 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 1.6e-24
Identity = 49/74 (66.22%), Postives = 63/74 (85.14%), Query Frame = 0 

Query: 22 AMGSGSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTAEEVKRHYERLVEDVNKI 81
          +M S ++WT K+NK+FE ALA YD+DTP+RWHN+ARAVGGK+AEEV+RHYE L+ DVN I
Sbjct: 5  SMSSSASWTRKENKLFERALATYDQDTPDRWHNVARAVGGKSAEEVRRHYELLIRDVNDI 64

Query: 82 ETGQVPFPNYRRSG 96
          E+G+ P PNYR +G
Sbjct: 65 ESGRYPHPNYRSNG 78

[Close]
BLAST of Lsi04G016660 vs. ExPASy Swiss-Prot
Match: Q58FS3 (Transcription factor RADIALIS OS=Antirrhinum majus OX=4151 GN=RAD PE=1 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 4.5e-24
Identity = 50/72 (69.44%), Postives = 61/72 (84.72%), Query Frame = 0 

Query: 24 GSGSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTAEEVKRHYERLVEDVNKIET 83
          GSG  W+AK+NK FE ALA+YDKDTP+RW N+ARAV G+T EEVK+HYE LVED+  IE+
Sbjct: 6  GSGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDIKYIES 65

Query: 84 GQVPFPNYRRSG 96
          G+VPFPNYR +G
Sbjct: 66 GKVPFPNYRTTG 77

[Close]
BLAST of Lsi04G016660 vs. ExPASy Swiss-Prot
Match: Q9SIJ5 (Protein RADIALIS-like 2 OS=Arabidopsis thaliana OX=3702 GN=RL2 PE=2 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 2.9e-23
Identity = 55/87 (63.22%), Postives = 66/87 (75.86%), Query Frame = 0 

Query: 24  GSGSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTAEEVKRHYERLVEDVNKIET 83
           GSGS WT KQNK FE ALA+YD+DTP+RWHN+ARAVGGKT EE KR Y+ LV D+  IE 
Sbjct: 10  GSGS-WTVKQNKAFERALAVYDQDTPDRWHNVARAVGGKTPEEAKRQYDLLVRDIESIEN 69

Query: 84  GQVPFPNYR-RSGPAGRGFCFVDEEQR 110
           G VPFP+Y+  +G + RG    DEE+R
Sbjct: 70  GHVPFPDYKTTTGNSNRG-RLRDEEKR 94

[Close]
BLAST of Lsi04G016660 vs. ExPASy Swiss-Prot
Match: Q1A173 (Protein RADIALIS-like 6 OS=Arabidopsis thaliana OX=3702 GN=RL6 PE=2 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 5.0e-23
Identity = 48/66 (72.73%), Postives = 57/66 (86.36%), Query Frame = 0 

Query: 27 SNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTAEEVKRHYERLVEDVNKIETGQV 86
          S WT  QNK+FE ALA+YDKDTP+RWHN+A+AVGGKT EEVKRHY+ LVED+  IETG+V
Sbjct: 10 SPWTFSQNKMFERALAVYDKDTPDRWHNVAKAVGGKTVEEVKRHYDILVEDLINIETGRV 69

Query: 87 PFPNYR 93
          P PNY+
Sbjct: 70 PLPNYK 75

[Close]
BLAST of Lsi04G016660 vs. ExPASy TrEMBL
Match: A0A5D3D7Z0 (Protein RADIALIS-like 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold242G00440 PE=4 SV=1)

HSP 1 Score: 181.4 bits (459), Expect = 5.0e-42
Identity = 84/87 (96.55%), Postives = 86/87 (98.85%), Query Frame = 0 

Query: 23  MGSGSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTAEEVKRHYERLVEDVNKIE 82
           MGSGSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTAEEVKRHYERLVEDVNKIE
Sbjct: 1   MGSGSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTAEEVKRHYERLVEDVNKIE 60

Query: 83  TGQVPFPNYRRSGPAGRGFCFVDEEQR 110
           TGQVPFPNYRRSGPA RGFCF+D+EQR
Sbjct: 61  TGQVPFPNYRRSGPAARGFCFLDQEQR 87

[Close]
BLAST of Lsi04G016660 vs. ExPASy TrEMBL
Match: A0A1S3CPA0 (protein RADIALIS-like 3 OS=Cucumis melo OX=3656 GN=LOC103503253 PE=4 SV=1)

HSP 1 Score: 181.4 bits (459), Expect = 5.0e-42
Identity = 84/87 (96.55%), Postives = 86/87 (98.85%), Query Frame = 0 

Query: 23  MGSGSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTAEEVKRHYERLVEDVNKIE 82
           MGSGSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTAEEVKRHYERLVEDVNKIE
Sbjct: 1   MGSGSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTAEEVKRHYERLVEDVNKIE 60

Query: 83  TGQVPFPNYRRSGPAGRGFCFVDEEQR 110
           TGQVPFPNYRRSGPA RGFCF+D+EQR
Sbjct: 61  TGQVPFPNYRRSGPAARGFCFLDQEQR 87

[Close]
BLAST of Lsi04G016660 vs. ExPASy TrEMBL
Match: A0A0A0LGK8 (SANT domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G857030 PE=4 SV=1)

HSP 1 Score: 170.6 bits (431), Expect = 8.8e-39
Identity = 81/87 (93.10%), Postives = 83/87 (95.40%), Query Frame = 0 

Query: 23  MGSGSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTAEEVKRHYERLVEDVNKIE 82
           MGSGSNWTAKQNKVFENALAIYDKDTPERW NLARAVGGKTAEEVKRHYERLVEDVNKIE
Sbjct: 1   MGSGSNWTAKQNKVFENALAIYDKDTPERWQNLARAVGGKTAEEVKRHYERLVEDVNKIE 60

Query: 83  TGQVPFPNYRRSGPAGRGFCFVDEEQR 110
           TGQVPFPNYRRS PA RGF F+D+EQR
Sbjct: 61  TGQVPFPNYRRSVPAARGFYFLDQEQR 87

[Close]
BLAST of Lsi04G016660 vs. ExPASy TrEMBL
Match: A0A6J1CC55 (protein RADIALIS-like 3 OS=Momordica charantia OX=3673 GN=LOC111009358 PE=4 SV=1)

HSP 1 Score: 168.3 bits (425), Expect = 4.4e-38
Identity = 82/109 (75.23%), Postives = 92/109 (84.40%), Query Frame = 0 

Query: 6   CRNGSKKSTTDLK----FDIAMGS-GSNWTAKQNKVFENALAIYDKDTPERWHNLARAVG 65
           C    +K++ D K     + AMGS GSNWTAKQNKVFENALA+YDKDTP+RWHNLARAVG
Sbjct: 5   CVTRREKTSADPKELTEIETAMGSGGSNWTAKQNKVFENALAVYDKDTPDRWHNLARAVG 64

Query: 66  GKTAEEVKRHYERLVEDVNKIETGQVPFPNYRRSGPAGRGFCFVDEEQR 110
           GKTAEEVKRHYERLV+DVNKIETGQVPFPNYR+S    RGFCF+DEE+R
Sbjct: 65  GKTAEEVKRHYERLVDDVNKIETGQVPFPNYRKSAHGPRGFCFIDEEKR 113

[Close]
BLAST of Lsi04G016660 vs. ExPASy TrEMBL
Match: A0A6J1IJ89 (protein RADIALIS-like 3 OS=Cucurbita maxima OX=3661 GN=LOC111476785 PE=4 SV=1)

HSP 1 Score: 156.8 bits (395), Expect = 1.3e-34
Identity = 72/87 (82.76%), Postives = 80/87 (91.95%), Query Frame = 0 

Query: 21  IAMGSGSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTAEEVKRHYERLVEDVNK 80
           +AMGSG NWTA+QNK FENALAIYDK+TP RWH LA+AVG KTAEEVKRHY+RLVEDVN+
Sbjct: 1   MAMGSGPNWTAQQNKAFENALAIYDKNTPGRWHILAKAVGSKTAEEVKRHYDRLVEDVNR 60

Query: 81  IETGQVPFPNYRRSGPAGRGFCFVDEE 108
           IETGQVPFPNYR+ GPAGRGF FVD+E
Sbjct: 61  IETGQVPFPNYRKPGPAGRGFRFVDDE 87

[Close]
BLAST of Lsi04G016660 vs. NCBI nr
Match: XP_008465612.1 (PREDICTED: protein RADIALIS-like 3 [Cucumis melo] >KAA0041605.1 protein RADIALIS-like 3 [Cucumis melo var. makuwa] >TYK19652.1 protein RADIALIS-like 3 [Cucumis melo var. makuwa])

HSP 1 Score: 181.4 bits (459), Expect = 1.0e-41
Identity = 84/87 (96.55%), Postives = 86/87 (98.85%), Query Frame = 0 

Query: 23  MGSGSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTAEEVKRHYERLVEDVNKIE 82
           MGSGSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTAEEVKRHYERLVEDVNKIE
Sbjct: 1   MGSGSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTAEEVKRHYERLVEDVNKIE 60

Query: 83  TGQVPFPNYRRSGPAGRGFCFVDEEQR 110
           TGQVPFPNYRRSGPA RGFCF+D+EQR
Sbjct: 61  TGQVPFPNYRRSGPAARGFCFLDQEQR 87

[Close]
BLAST of Lsi04G016660 vs. NCBI nr
Match: XP_038905673.1 (protein RADIALIS-like 3 [Benincasa hispida])

HSP 1 Score: 180.6 bits (457), Expect = 1.8e-41
Identity = 85/87 (97.70%), Postives = 86/87 (98.85%), Query Frame = 0 

Query: 23  MGSGSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTAEEVKRHYERLVEDVNKIE 82
           MGSGS+WTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTAEEVKRHYERLVEDVNKIE
Sbjct: 1   MGSGSHWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTAEEVKRHYERLVEDVNKIE 60

Query: 83  TGQVPFPNYRRSGPAGRGFCFVDEEQR 110
           TGQVPFPNYRRSGPA RGFCFVDEEQR
Sbjct: 61  TGQVPFPNYRRSGPAVRGFCFVDEEQR 87

[Close]
BLAST of Lsi04G016660 vs. NCBI nr
Match: XP_004147867.1 (protein RADIALIS-like 3 [Cucumis sativus] >KGN59962.1 hypothetical protein Csa_001999 [Cucumis sativus])

HSP 1 Score: 170.6 bits (431), Expect = 1.8e-38
Identity = 81/87 (93.10%), Postives = 83/87 (95.40%), Query Frame = 0 

Query: 23  MGSGSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTAEEVKRHYERLVEDVNKIE 82
           MGSGSNWTAKQNKVFENALAIYDKDTPERW NLARAVGGKTAEEVKRHYERLVEDVNKIE
Sbjct: 1   MGSGSNWTAKQNKVFENALAIYDKDTPERWQNLARAVGGKTAEEVKRHYERLVEDVNKIE 60

Query: 83  TGQVPFPNYRRSGPAGRGFCFVDEEQR 110
           TGQVPFPNYRRS PA RGF F+D+EQR
Sbjct: 61  TGQVPFPNYRRSVPAARGFYFLDQEQR 87

[Close]
BLAST of Lsi04G016660 vs. NCBI nr
Match: XP_022138113.1 (protein RADIALIS-like 3 [Momordica charantia])

HSP 1 Score: 168.3 bits (425), Expect = 9.0e-38
Identity = 82/109 (75.23%), Postives = 92/109 (84.40%), Query Frame = 0 

Query: 6   CRNGSKKSTTDLK----FDIAMGS-GSNWTAKQNKVFENALAIYDKDTPERWHNLARAVG 65
           C    +K++ D K     + AMGS GSNWTAKQNKVFENALA+YDKDTP+RWHNLARAVG
Sbjct: 5   CVTRREKTSADPKELTEIETAMGSGGSNWTAKQNKVFENALAVYDKDTPDRWHNLARAVG 64

Query: 66  GKTAEEVKRHYERLVEDVNKIETGQVPFPNYRRSGPAGRGFCFVDEEQR 110
           GKTAEEVKRHYERLV+DVNKIETGQVPFPNYR+S    RGFCF+DEE+R
Sbjct: 65  GKTAEEVKRHYERLVDDVNKIETGQVPFPNYRKSAHGPRGFCFIDEEKR 113

[Close]
BLAST of Lsi04G016660 vs. NCBI nr
Match: KAG6591315.1 (Protein RADIALIS-like 1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 158.7 bits (400), Expect = 7.2e-35
Identity = 73/87 (83.91%), Postives = 81/87 (93.10%), Query Frame = 0 

Query: 21  IAMGSGSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTAEEVKRHYERLVEDVNK 80
           +AMGSGSNWTA+QNK FENALAIYDK+TP RWH LA+AVG KTAEEVKRHY+RLVEDVN+
Sbjct: 1   MAMGSGSNWTAQQNKAFENALAIYDKNTPGRWHILAKAVGSKTAEEVKRHYDRLVEDVNR 60

Query: 81  IETGQVPFPNYRRSGPAGRGFCFVDEE 108
           IETGQVPFPNYR+ GPAGRGF FVD+E
Sbjct: 61  IETGQVPFPNYRKPGPAGRGFRFVDDE 87

[Close]
BLAST of Lsi04G016660 vs. TAIR 10
Match: AT4G39250.1 (RAD-like 1 )

HSP 1 Score: 117.1 bits (292), Expect = 2.2e-26
Identity = 53/87 (60.92%), Postives = 64/87 (73.56%), Query Frame = 0 

Query: 25  SGSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTAEEVKRHYERLVEDVNKIETG 84
           S  +WTAKQNK FE ALA YD+DTP RW N+A+ VGGKT EEVKRHYE LV+D+N IE G
Sbjct: 10  SSGSWTAKQNKAFEQALATYDQDTPNRWQNVAKVVGGKTTEEVKRHYELLVQDINSIENG 69

Query: 85  QVPFPNYRRSGPAGRGFCFVDEEQRQS 112
            VPFPNYR SG    G    +E++ ++
Sbjct: 70  HVPFPNYRTSGGCTNGRLSQEEKRMRN 96

[Close]
BLAST of Lsi04G016660 vs. TAIR 10
Match: AT2G21650.1 (Homeodomain-like superfamily protein )

HSP 1 Score: 110.5 bits (275), Expect = 2.1e-24
Identity = 55/87 (63.22%), Postives = 66/87 (75.86%), Query Frame = 0 

Query: 24  GSGSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTAEEVKRHYERLVEDVNKIET 83
           GSGS WT KQNK FE ALA+YD+DTP+RWHN+ARAVGGKT EE KR Y+ LV D+  IE 
Sbjct: 10  GSGS-WTVKQNKAFERALAVYDQDTPDRWHNVARAVGGKTPEEAKRQYDLLVRDIESIEN 69

Query: 84  GQVPFPNYR-RSGPAGRGFCFVDEEQR 110
           G VPFP+Y+  +G + RG    DEE+R
Sbjct: 70  GHVPFPDYKTTTGNSNRG-RLRDEEKR 94

[Close]
BLAST of Lsi04G016660 vs. TAIR 10
Match: AT1G75250.1 (RAD-like 6 )

HSP 1 Score: 109.8 bits (273), Expect = 3.6e-24
Identity = 48/66 (72.73%), Postives = 57/66 (86.36%), Query Frame = 0 

Query: 27 SNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTAEEVKRHYERLVEDVNKIETGQV 86
          S WT  QNK+FE ALA+YDKDTP+RWHN+A+AVGGKT EEVKRHY+ LVED+  IETG+V
Sbjct: 10 SPWTFSQNKMFERALAVYDKDTPDRWHNVAKAVGGKTVEEVKRHYDILVEDLINIETGRV 69

Query: 87 PFPNYR 93
          P PNY+
Sbjct: 70 PLPNYK 75

[Close]
BLAST of Lsi04G016660 vs. TAIR 10
Match: AT1G75250.2 (RAD-like 6 )

HSP 1 Score: 109.8 bits (273), Expect = 3.6e-24
Identity = 48/66 (72.73%), Postives = 57/66 (86.36%), Query Frame = 0 

Query: 27 SNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTAEEVKRHYERLVEDVNKIETGQV 86
          S WT  QNK+FE ALA+YDKDTP+RWHN+A+AVGGKT EEVKRHY+ LVED+  IETG+V
Sbjct: 10 SPWTFSQNKMFERALAVYDKDTPDRWHNVAKAVGGKTVEEVKRHYDILVEDLINIETGRV 69

Query: 87 PFPNYR 93
          P PNY+
Sbjct: 70 PLPNYK 75

[Close]
BLAST of Lsi04G016660 vs. TAIR 10
Match: AT1G19510.1 (RAD-like 5 )

HSP 1 Score: 104.4 bits (259), Expect = 1.5e-22
Identity = 46/71 (64.79%), Postives = 58/71 (81.69%), Query Frame = 0 

Query: 22 AMGSGSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTAEEVKRHYERLVEDVNKI 81
          +M S S+WT+KQNK+FE ALA+YDKDTP+RW N+A+AVG K+AEEVKRHY+ LVED+  I
Sbjct: 5  SMSSSSSWTSKQNKMFERALAVYDKDTPDRWQNVAKAVGSKSAEEVKRHYDILVEDLMNI 64

Query: 82 ETGQVPFPNYR 93
          E   VP P Y+
Sbjct: 65 EQDLVPLPKYK 75

The following BLAST results are available for this feature:
BLAST of Lsi04G016660 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
F4JVB83.1e-2560.92Protein RADIALIS-like 1 OS=Arabidopsis thaliana OX=3702 GN=RL1 PE=2 SV=1[more]
Q6NNN01.6e-2466.22Protein RADIALIS-like 3 OS=Arabidopsis thaliana OX=3702 GN=RL3 PE=2 SV=1[more]
Q58FS34.5e-2469.44Transcription factor RADIALIS OS=Antirrhinum majus OX=4151 GN=RAD PE=1 SV=1[more]
Q9SIJ52.9e-2363.22Protein RADIALIS-like 2 OS=Arabidopsis thaliana OX=3702 GN=RL2 PE=2 SV=1[more]
Q1A1735.0e-2372.73Protein RADIALIS-like 6 OS=Arabidopsis thaliana OX=3702 GN=RL6 PE=2 SV=1[more]
BLAST of Lsi04G016660 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3D7Z05.0e-4296.55Protein RADIALIS-like 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A1S3CPA05.0e-4296.55protein RADIALIS-like 3 OS=Cucumis melo OX=3656 GN=LOC103503253 PE=4 SV=1[more]
A0A0A0LGK88.8e-3993.10SANT domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G857030 PE=4 S... [more]
A0A6J1CC554.4e-3875.23protein RADIALIS-like 3 OS=Momordica charantia OX=3673 GN=LOC111009358 PE=4 SV=1[more]
A0A6J1IJ891.3e-3482.76protein RADIALIS-like 3 OS=Cucurbita maxima OX=3661 GN=LOC111476785 PE=4 SV=1[more]
BLAST of Lsi04G016660 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008465612.11.0e-4196.55PREDICTED: protein RADIALIS-like 3 [Cucumis melo] >KAA0041605.1 protein RADIALIS... [more]
XP_038905673.11.8e-4197.70protein RADIALIS-like 3 [Benincasa hispida][more]
XP_004147867.11.8e-3893.10protein RADIALIS-like 3 [Cucumis sativus] >KGN59962.1 hypothetical protein Csa_0... [more]
XP_022138113.19.0e-3875.23protein RADIALIS-like 3 [Momordica charantia][more]
KAG6591315.17.2e-3583.91Protein RADIALIS-like 1, partial [Cucurbita argyrosperma subsp. sororia][more]
BLAST of Lsi04G016660 vs. TAIR 10
Match NameE-valueIdentityDescription
AT4G39250.12.2e-2660.92RAD-like 1 [more]
AT2G21650.12.1e-2463.22Homeodomain-like superfamily protein [more]
AT1G75250.13.6e-2472.73RAD-like 6 [more]
AT1G75250.23.6e-2472.73RAD-like 6 [more]
AT1G19510.11.5e-2264.79RAD-like 5 [more]
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001005SANT/Myb domainSMARTSM00717santcoord: 25..77
e-value: 2.7E-7
score: 40.2
IPR001005SANT/Myb domainPROSITEPS50090MYB_LIKEcoord: 27..75
score: 6.214041
IPR001005SANT/Myb domainCDDcd00167SANTcoord: 28..75
e-value: 7.7306E-6
score: 40.2514
NoneNo IPR availableGENE3D1.10.10.60coord: 22..88
e-value: 4.7E-23
score: 82.7
NoneNo IPR availablePANTHERPTHR43952:SF52MYB FAMILY TRANSCRIPTION FACTORcoord: 23..110
IPR044636Transcription factor RADIALIS-likePANTHERPTHR43952MYB FAMILY TRANSCRIPTION FACTOR-RELATEDcoord: 23..110
IPR017884SANT domainPROSITEPS51293SANTcoord: 24..79
score: 10.283418
IPR009057Homeobox-like domain superfamilySUPERFAMILY46689Homeodomain-likecoord: 28..82

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi04G016660.1Lsi04G016660.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0006412 translation
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005840 ribosome
molecular_function GO:0003700 DNA-binding transcription factor activity
molecular_function GO:0047429 nucleoside-triphosphate diphosphatase activity
molecular_function GO:0019843 rRNA binding
molecular_function GO:0003735 structural constituent of ribosome