Lsi04G016620 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi04G016620
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
DescriptionTRASH domain-containing protein
Locationchr04: 24063684 .. 24064645 (+)
RNA-Seq ExpressionLsi04G016620
SyntenyLsi04G016620
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGGTTAGAGAAGTGTTGGTTCTGTTCTTCCACTATATATCCAGGACATGGTATTCAGTTTGTTCGCAATGATGCGAAGGTAAGGACGTAGGTTGCAAACCTTCATGATTTGTATGGCTTGTTCTACTCATTGCTTGTATGTATTTGCTTGCAGTAAATGTCTCTCAATCTCATCTAATGCTTGCGGATTGACGAGATGACATTGTTCTGTTCTCTATAGGCCTGTTTGTGATGCATATTAGCCTGTAGAAATAGATAATCGTTCTCACTGGGCTTGTAAATTAGTGATGGTGGGCGGGGAGCCCCATCTTCCTATTTATTAATATGATTTTTTTATTGCAGATTTTTAGATTTTGTCGGTCAAAATGCCACAAGAACTTCAAGATGAAGAGAAATCCCCGTAAAGTAAAATGGACTAAGGCATATAGGAGGTTGCATGGAAAGGATATGACACAGGTAAACTTTCTTCATTTATTTGTGGAGCAAATGGGATTTTGTAAATACAAACTTTCTGTTGTCTTTGTCTCCTTAATTCTTGTTTCATTTGTATTATCCAGGACTCAACTTTTGAGTTCGAGAGGAAGCGCAATAGGCCAGAGAGATATGACAGGAATCTCGCAGAAGAGACATTGAGAGCTATTAAGAAAATTGATAAAGTCAGAGCGGATAGGGAGTCGAGACATATTGCACGCAGGTTGAAAATTTCTTCCATTGCCATTTGTTGTATGCCTATATATTTTTTGAATACTGCTTCAGTTGTAACTGGGGATCGTTCACATTTGCAGACATCAAGGAAAGAAAGCAAAGGAGCTCAGAGAGGCACAGAAGGAATTGGATCAAAGCATCAGTTTGGTCAAAGCACCTTCTGCTCTCAAGGAGGATCCTTCGCTCACTCTTCCAAAGATCAAAGTCAAGGTGTCACCATCACAAGCAGAGCAAAATCAGCGTATGGAAGAATGA

mRNA sequence

ATGAGGTTAGAGAAGTGTTGGTTCTGTTCTTCCACTATATATCCAGGACATGGTATTCAGTTTGTTCGCAATGATGCGAAGATTTTTAGATTTTGTCGGTCAAAATGCCACAAGAACTTCAAGATGAAGAGAAATCCCCGTAAAGTAAAATGGACTAAGGCATATAGGAGGTTGCATGGAAAGGATATGACACAGGACTCAACTTTTGAGTTCGAGAGGAAGCGCAATAGGCCAGAGAGATATGACAGGAATCTCGCAGAAGAGACATTGAGAGCTATTAAGAAAATTGATAAAGTCAGAGCGGATAGGGAGTCGAGACATATTGCACGCAGACATCAAGGAAAGAAAGCAAAGGAGCTCAGAGAGGCACAGAAGGAATTGGATCAAAGCATCAGTTTGGTCAAAGCACCTTCTGCTCTCAAGGAGGATCCTTCGCTCACTCTTCCAAAGATCAAAGTCAAGGTGTCACCATCACAAGCAGAGCAAAATCAGCGTATGGAAGAATGA

Coding sequence (CDS)

ATGAGGTTAGAGAAGTGTTGGTTCTGTTCTTCCACTATATATCCAGGACATGGTATTCAGTTTGTTCGCAATGATGCGAAGATTTTTAGATTTTGTCGGTCAAAATGCCACAAGAACTTCAAGATGAAGAGAAATCCCCGTAAAGTAAAATGGACTAAGGCATATAGGAGGTTGCATGGAAAGGATATGACACAGGACTCAACTTTTGAGTTCGAGAGGAAGCGCAATAGGCCAGAGAGATATGACAGGAATCTCGCAGAAGAGACATTGAGAGCTATTAAGAAAATTGATAAAGTCAGAGCGGATAGGGAGTCGAGACATATTGCACGCAGACATCAAGGAAAGAAAGCAAAGGAGCTCAGAGAGGCACAGAAGGAATTGGATCAAAGCATCAGTTTGGTCAAAGCACCTTCTGCTCTCAAGGAGGATCCTTCGCTCACTCTTCCAAAGATCAAAGTCAAGGTGTCACCATCACAAGCAGAGCAAAATCAGCGTATGGAAGAATGA

Protein sequence

MRLEKCWFCSSTIYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHGKDMTQDSTFEFERKRNRPERYDRNLAEETLRAIKKIDKVRADRESRHIARRHQGKKAKELREAQKELDQSISLVKAPSALKEDPSLTLPKIKVKVSPSQAEQNQRMEE
Homology
[Close]
BLAST of Lsi04G016620 vs. ExPASy Swiss-Prot
Match: O22165 (Probable ribosome biogenesis protein RLP24 OS=Arabidopsis thaliana OX=3702 GN=At2g44860 PE=1 SV=1)

HSP 1 Score: 227.6 bits (579), Expect = 1.0e-58
Identity = 117/168 (69.64%), Postives = 134/168 (79.76%), Query Frame = 0 

Query: 1   MRLEKCWFCSSTIYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60
           MRLEKCWFCSSTIYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKA+R  HG
Sbjct: 1   MRLEKCWFCSSTIYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAFRAAHG 60

Query: 61  KDMTQDSTFEFERKRNRPERYDRNLAEETLRAIKKIDKVRADRESRHIARRHQGKKAKEL 120
           KDMT+D+TFEFE+KRNRPERYDRN+ E TL AIKKI K+R  RE++HI  R +  K K+L
Sbjct: 61  KDMTKDTTFEFEKKRNRPERYDRNVTENTLMAIKKIAKIRTAREAKHIENRLKPNKQKKL 120

Query: 121 REAQKELDQSISLVKAPSALKEDPSLTLPKIKVKVSPSQAEQNQRMEE 169
            +  KELDQ+I +V+AP A          KIKV VS  ++ QN+ MEE
Sbjct: 121 NDDMKELDQNIHMVQAPGA---------QKIKVDVSEKKSVQNEAMEE 159

[Close]
BLAST of Lsi04G016620 vs. ExPASy Swiss-Prot
Match: Q86B05 (Probable ribosome biogenesis protein RLP24 OS=Dictyostelium discoideum OX=44689 GN=rlp24 PE=2 SV=1)

HSP 1 Score: 174.1 bits (440), Expect = 1.3e-42
Identity = 79/142 (55.63%), Postives = 108/142 (76.06%), Query Frame = 0 

Query: 1   MRLEKCWFCSSTIYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60
           MR+EKC+FCS  +YPGHG+ FVRND K FRFCRSKCHKNFK+KRNPRK +WTKA+R+L+G
Sbjct: 1   MRIEKCYFCSGPVYPGHGVMFVRNDCKQFRFCRSKCHKNFKLKRNPRKTRWTKAFRKLNG 60

Query: 61  KDMTQDSTFEFERKRNRPERYDRNLAEETLRAIKKIDKVRADRESRHIARRHQGKKAKEL 120
           K+MT D T EFE+KRNRP +YDR L   T+ A+ ++ K++  RE      R +G K  + 
Sbjct: 61  KEMTVDKTLEFEKKRNRPVKYDRELINNTIIAMARVQKIKERREKTFYKNRMEGVKGMQK 120

Query: 121 REAQKELDQSISLVKAPSALKE 143
           ++  KE++Q++SL++ PSAL +
Sbjct: 121 KQKLKEINQNLSLIRGPSALNK 142

[Close]
BLAST of Lsi04G016620 vs. ExPASy Swiss-Prot
Match: Q3SZ12 (Probable ribosome biogenesis protein RLP24 OS=Bos taurus OX=9913 GN=RSL24D1 PE=2 SV=1)

HSP 1 Score: 163.3 bits (412), Expect = 2.4e-39
Identity = 79/143 (55.24%), Postives = 112/143 (78.32%), Query Frame = 0 

Query: 1   MRLEKCWFCSSTIYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60
           MR+EKC+FCS  IYPGHG+ FVRND K+FRFC+SKCHKNFK KRNPRKV+WTKA+R+  G
Sbjct: 1   MRIEKCYFCSGPIYPGHGMMFVRNDCKVFRFCKSKCHKNFKKKRNPRKVRWTKAFRKAAG 60

Query: 61  KDMTQDSTFEFERKRNRPERYDRNLAEETLRAIKKIDKVRADRESRHIARRHQGKKAKEL 120
           K++T D++FEFE++RN P +Y R L  +T+ A+K++++++  R+++ I  R   KK KEL
Sbjct: 61  KELTVDNSFEFEKRRNEPVKYQRELWNKTIDAMKRVEEIKQKRQAKFIMNRL--KKNKEL 120

Query: 121 REAQ--KELDQSISLVKAPSALK 142
           ++ Q  KE+ Q+I L++AP A K
Sbjct: 121 QKVQDVKEVKQNIHLIRAPLAGK 141

[Close]
BLAST of Lsi04G016620 vs. ExPASy Swiss-Prot
Match: Q99L28 (Probable ribosome biogenesis protein RLP24 OS=Mus musculus OX=10090 GN=Rsl24d1 PE=2 SV=1)

HSP 1 Score: 163.3 bits (412), Expect = 2.4e-39
Identity = 79/143 (55.24%), Postives = 112/143 (78.32%), Query Frame = 0 

Query: 1   MRLEKCWFCSSTIYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60
           MR+EKC+FCS  IYPGHG+ FVRND K+FRFC+SKCHKNFK KRNPRKV+WTKA+R+  G
Sbjct: 1   MRIEKCYFCSGPIYPGHGMMFVRNDCKVFRFCKSKCHKNFKKKRNPRKVRWTKAFRKAAG 60

Query: 61  KDMTQDSTFEFERKRNRPERYDRNLAEETLRAIKKIDKVRADRESRHIARRHQGKKAKEL 120
           K++T D++FEFE++RN P +Y R L  +T+ A+K++++++  R+++ I  R   KK KEL
Sbjct: 61  KELTVDNSFEFEKRRNEPVKYQRELWNKTIDAMKRVEEIKQKRQAKFIMNRL--KKNKEL 120

Query: 121 REAQ--KELDQSISLVKAPSALK 142
           ++ Q  KE+ Q+I L++AP A K
Sbjct: 121 QKVQDIKEVKQNIHLIRAPLAGK 141

[Close]
BLAST of Lsi04G016620 vs. ExPASy Swiss-Prot
Match: Q9UHA3 (Probable ribosome biogenesis protein RLP24 OS=Homo sapiens OX=9606 GN=RSL24D1 PE=1 SV=1)

HSP 1 Score: 162.9 bits (411), Expect = 3.1e-39
Identity = 79/143 (55.24%), Postives = 112/143 (78.32%), Query Frame = 0 

Query: 1   MRLEKCWFCSSTIYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60
           MR+EKC+FCS  IYPGHG+ FVRND K+FRFC+SKCHKNFK KRNPRKV+WTKA+R+  G
Sbjct: 1   MRIEKCYFCSGPIYPGHGMMFVRNDCKVFRFCKSKCHKNFKKKRNPRKVRWTKAFRKAAG 60

Query: 61  KDMTQDSTFEFERKRNRPERYDRNLAEETLRAIKKIDKVRADRESRHIARRHQGKKAKEL 120
           K++T D++FEFE++RN P +Y R L  +T+ A+K++++++  R+++ I  R   KK KEL
Sbjct: 61  KELTVDNSFEFEKRRNEPIKYQRELWNKTIDAMKRVEEIKQKRQAKFIMNRL--KKNKEL 120

Query: 121 REAQ--KELDQSISLVKAPSALK 142
           ++ Q  KE+ Q+I L++AP A K
Sbjct: 121 QKVQDIKEVKQNIHLIRAPLAGK 141

[Close]
BLAST of Lsi04G016620 vs. ExPASy TrEMBL
Match: A0A6J1ILW2 (probable ribosome biogenesis protein RLP24 OS=Cucurbita maxima OX=3661 GN=LOC111476784 PE=3 SV=1)

HSP 1 Score: 312.8 bits (800), Expect = 8.9e-82
Identity = 160/168 (95.24%), Postives = 162/168 (96.43%), Query Frame = 0 

Query: 1   MRLEKCWFCSSTIYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60
           MRLEKCWFCSSTIYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG
Sbjct: 1   MRLEKCWFCSSTIYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60

Query: 61  KDMTQDSTFEFERKRNRPERYDRNLAEETLRAIKKIDKVRADRESRHIARRHQGKKAKEL 120
           KDMTQDSTFEFERKRNRPERYDRNL EETLRAIKKIDKVRA+RESRHIARR QGKKAKEL
Sbjct: 61  KDMTQDSTFEFERKRNRPERYDRNLTEETLRAIKKIDKVRAERESRHIARRMQGKKAKEL 120

Query: 121 REAQKELDQSISLVKAPSALKEDPSLTLPKIKVKVSPSQAEQNQRMEE 169
           REA+KELDQSISLVKAP ALKEDPSLTLPKIKV V PSQAEQNQ MEE
Sbjct: 121 REAKKELDQSISLVKAPLALKEDPSLTLPKIKVSVEPSQAEQNQSMEE 168

[Close]
BLAST of Lsi04G016620 vs. ExPASy TrEMBL
Match: A0A6J1C1W9 (probable ribosome biogenesis protein RLP24 OS=Momordica charantia OX=3673 GN=LOC111007521 PE=3 SV=1)

HSP 1 Score: 309.3 bits (791), Expect = 9.8e-81
Identity = 158/168 (94.05%), Postives = 163/168 (97.02%), Query Frame = 0 

Query: 1   MRLEKCWFCSSTIYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60
           MRLEKCWFCSSTIYPGHGIQFVRNDAKIF+FCRSKCHKNFKMKRNPRKVKWTKAYRRL+G
Sbjct: 1   MRLEKCWFCSSTIYPGHGIQFVRNDAKIFKFCRSKCHKNFKMKRNPRKVKWTKAYRRLNG 60

Query: 61  KDMTQDSTFEFERKRNRPERYDRNLAEETLRAIKKIDKVRADRESRHIARRHQGKKAKEL 120
           KDMTQDSTFEFERKRNRPERYDRNL EETLRAIKKIDKVRADRESRHIARR QGKKAKEL
Sbjct: 61  KDMTQDSTFEFERKRNRPERYDRNLTEETLRAIKKIDKVRADRESRHIARRMQGKKAKEL 120

Query: 121 REAQKELDQSISLVKAPSALKEDPSLTLPKIKVKVSPSQAEQNQRMEE 169
           +EA+KELDQSISLVKAPS LKEDPSLTLPKIKVKV+ SQAEQNQ MEE
Sbjct: 121 KEARKELDQSISLVKAPSVLKEDPSLTLPKIKVKVAQSQAEQNQAMEE 168

[Close]
BLAST of Lsi04G016620 vs. ExPASy TrEMBL
Match: A0A6J1D3M8 (probable ribosome biogenesis protein RLP24 OS=Momordica charantia OX=3673 GN=LOC111017299 PE=3 SV=1)

HSP 1 Score: 307.8 bits (787), Expect = 2.9e-80
Identity = 157/168 (93.45%), Postives = 162/168 (96.43%), Query Frame = 0 

Query: 1   MRLEKCWFCSSTIYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60
           MRLEKCWFCSSTIYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRL+G
Sbjct: 1   MRLEKCWFCSSTIYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLNG 60

Query: 61  KDMTQDSTFEFERKRNRPERYDRNLAEETLRAIKKIDKVRADRESRHIARRHQGKKAKEL 120
           KDMTQDSTFEFERKRNRPERYDRNL EETLRAIKKIDKVRADRESRHIARR QGKK KEL
Sbjct: 61  KDMTQDSTFEFERKRNRPERYDRNLTEETLRAIKKIDKVRADRESRHIARRMQGKKGKEL 120

Query: 121 REAQKELDQSISLVKAPSALKEDPSLTLPKIKVKVSPSQAEQNQRMEE 169
           +EA+KELDQSISLVKAPS LKEDPSLTLPKIKVKV+ SQAEQNQ ME+
Sbjct: 121 KEARKELDQSISLVKAPSVLKEDPSLTLPKIKVKVAQSQAEQNQAMEQ 168

[Close]
BLAST of Lsi04G016620 vs. ExPASy TrEMBL
Match: A0A6J1F7I9 (probable ribosome biogenesis protein RLP24 OS=Cucurbita moschata OX=3662 GN=LOC111443073 PE=3 SV=1)

HSP 1 Score: 304.3 bits (778), Expect = 3.2e-79
Identity = 156/168 (92.86%), Postives = 159/168 (94.64%), Query Frame = 0 

Query: 1   MRLEKCWFCSSTIYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60
           MRLEKCWFCSSTIYPGHGIQFVRND KIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG
Sbjct: 1   MRLEKCWFCSSTIYPGHGIQFVRNDTKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60

Query: 61  KDMTQDSTFEFERKRNRPERYDRNLAEETLRAIKKIDKVRADRESRHIARRHQGKKAKEL 120
           KDMTQDSTFEFERKRNRPER DRNL EETLRAIKKIDKVRA+RESRHIARR QGKKAKEL
Sbjct: 61  KDMTQDSTFEFERKRNRPERCDRNLTEETLRAIKKIDKVRAERESRHIARRMQGKKAKEL 120

Query: 121 REAQKELDQSISLVKAPSALKEDPSLTLPKIKVKVSPSQAEQNQRMEE 169
           REA+KELDQSISLVKAP ALKEDPSL LPKIK+ V PSQAEQNQ MEE
Sbjct: 121 REAKKELDQSISLVKAPLALKEDPSLILPKIKLNVEPSQAEQNQSMEE 168

[Close]
BLAST of Lsi04G016620 vs. ExPASy TrEMBL
Match: A0A6J1KWV2 (probable ribosome biogenesis protein RLP24 OS=Cucurbita maxima OX=3661 GN=LOC111498315 PE=3 SV=1)

HSP 1 Score: 297.7 bits (761), Expect = 3.0e-77
Identity = 149/168 (88.69%), Postives = 161/168 (95.83%), Query Frame = 0 

Query: 1   MRLEKCWFCSSTIYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60
           MRLEKCWFCSST+YPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG
Sbjct: 1   MRLEKCWFCSSTVYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60

Query: 61  KDMTQDSTFEFERKRNRPERYDRNLAEETLRAIKKIDKVRADRESRHIARRHQGKKAKEL 120
           KDMTQDSTFEFERKRNRPERYDRNL EETLRAIKKIDKVRA+RE+RHIARR +GKK KEL
Sbjct: 61  KDMTQDSTFEFERKRNRPERYDRNLTEETLRAIKKIDKVRAEREARHIARRMKGKKGKEL 120

Query: 121 REAQKELDQSISLVKAPSALKEDPSLTLPKIKVKVSPSQAEQNQRMEE 169
           +EA+KEL+QSIS+VK P+ LKEDPSLTLPKI+VKV+ SQAE+NQ MEE
Sbjct: 121 KEARKELEQSISMVKPPALLKEDPSLTLPKIQVKVAQSQAEKNQPMEE 168

[Close]
BLAST of Lsi04G016620 vs. NCBI nr
Match: XP_038905540.1 (probable ribosome biogenesis protein RLP24 isoform X1 [Benincasa hispida])

HSP 1 Score: 317.4 bits (812), Expect = 7.5e-83
Identity = 162/168 (96.43%), Postives = 164/168 (97.62%), Query Frame = 0 

Query: 1   MRLEKCWFCSSTIYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60
           MRLEKCWFCSSTIYPGHGIQFVRNDA IFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG
Sbjct: 29  MRLEKCWFCSSTIYPGHGIQFVRNDATIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 88

Query: 61  KDMTQDSTFEFERKRNRPERYDRNLAEETLRAIKKIDKVRADRESRHIARRHQGKKAKEL 120
           KDMTQDSTFEFERKRNRPERYDRNL EETL+AIKKIDKVRA+RESRHIARRHQGKKAKEL
Sbjct: 89  KDMTQDSTFEFERKRNRPERYDRNLTEETLKAIKKIDKVRANRESRHIARRHQGKKAKEL 148

Query: 121 REAQKELDQSISLVKAPSALKEDPSLTLPKIKVKVSPSQAEQNQRMEE 169
            EAQKELDQSISLVKAPSALKEDPSLTLPKIKVKV PSQAEQNQRMEE
Sbjct: 149 GEAQKELDQSISLVKAPSALKEDPSLTLPKIKVKVVPSQAEQNQRMEE 196

[Close]
BLAST of Lsi04G016620 vs. NCBI nr
Match: XP_038905541.1 (probable ribosome biogenesis protein RLP24 isoform X2 [Benincasa hispida] >XP_038905542.1 probable ribosome biogenesis protein RLP24 isoform X2 [Benincasa hispida] >XP_038905544.1 probable ribosome biogenesis protein RLP24 isoform X2 [Benincasa hispida] >XP_038905545.1 probable ribosome biogenesis protein RLP24 isoform X2 [Benincasa hispida])

HSP 1 Score: 317.4 bits (812), Expect = 7.5e-83
Identity = 162/168 (96.43%), Postives = 164/168 (97.62%), Query Frame = 0 

Query: 1   MRLEKCWFCSSTIYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60
           MRLEKCWFCSSTIYPGHGIQFVRNDA IFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG
Sbjct: 1   MRLEKCWFCSSTIYPGHGIQFVRNDATIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60

Query: 61  KDMTQDSTFEFERKRNRPERYDRNLAEETLRAIKKIDKVRADRESRHIARRHQGKKAKEL 120
           KDMTQDSTFEFERKRNRPERYDRNL EETL+AIKKIDKVRA+RESRHIARRHQGKKAKEL
Sbjct: 61  KDMTQDSTFEFERKRNRPERYDRNLTEETLKAIKKIDKVRANRESRHIARRHQGKKAKEL 120

Query: 121 REAQKELDQSISLVKAPSALKEDPSLTLPKIKVKVSPSQAEQNQRMEE 169
            EAQKELDQSISLVKAPSALKEDPSLTLPKIKVKV PSQAEQNQRMEE
Sbjct: 121 GEAQKELDQSISLVKAPSALKEDPSLTLPKIKVKVVPSQAEQNQRMEE 168

[Close]
BLAST of Lsi04G016620 vs. NCBI nr
Match: XP_038903115.1 (probable ribosome biogenesis protein RLP24 [Benincasa hispida])

HSP 1 Score: 315.8 bits (808), Expect = 2.2e-82
Identity = 160/168 (95.24%), Postives = 163/168 (97.02%), Query Frame = 0 

Query: 1   MRLEKCWFCSSTIYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60
           MRLEKCWFCSSTIYPGHGIQFVRNDA IFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG
Sbjct: 1   MRLEKCWFCSSTIYPGHGIQFVRNDATIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60

Query: 61  KDMTQDSTFEFERKRNRPERYDRNLAEETLRAIKKIDKVRADRESRHIARRHQGKKAKEL 120
           KDMTQDSTFEFERKRNRPERYDRNL EETL+AI+KIDKVRADRESRHIARRHQGKKAKEL
Sbjct: 61  KDMTQDSTFEFERKRNRPERYDRNLTEETLKAIRKIDKVRADRESRHIARRHQGKKAKEL 120

Query: 121 REAQKELDQSISLVKAPSALKEDPSLTLPKIKVKVSPSQAEQNQRMEE 169
            EAQKELDQSISLVKAPSALKEDPSLTLPKIK+KV PSQAEQ QRMEE
Sbjct: 121 SEAQKELDQSISLVKAPSALKEDPSLTLPKIKIKVVPSQAEQTQRMEE 168

[Close]
BLAST of Lsi04G016620 vs. NCBI nr
Match: XP_022976358.1 (probable ribosome biogenesis protein RLP24 [Cucurbita maxima] >XP_022976359.1 probable ribosome biogenesis protein RLP24 [Cucurbita maxima])

HSP 1 Score: 312.8 bits (800), Expect = 1.8e-81
Identity = 160/168 (95.24%), Postives = 162/168 (96.43%), Query Frame = 0 

Query: 1   MRLEKCWFCSSTIYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60
           MRLEKCWFCSSTIYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG
Sbjct: 1   MRLEKCWFCSSTIYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60

Query: 61  KDMTQDSTFEFERKRNRPERYDRNLAEETLRAIKKIDKVRADRESRHIARRHQGKKAKEL 120
           KDMTQDSTFEFERKRNRPERYDRNL EETLRAIKKIDKVRA+RESRHIARR QGKKAKEL
Sbjct: 61  KDMTQDSTFEFERKRNRPERYDRNLTEETLRAIKKIDKVRAERESRHIARRMQGKKAKEL 120

Query: 121 REAQKELDQSISLVKAPSALKEDPSLTLPKIKVKVSPSQAEQNQRMEE 169
           REA+KELDQSISLVKAP ALKEDPSLTLPKIKV V PSQAEQNQ MEE
Sbjct: 121 REAKKELDQSISLVKAPLALKEDPSLTLPKIKVSVEPSQAEQNQSMEE 168

[Close]
BLAST of Lsi04G016620 vs. NCBI nr
Match: KAG6591317.1 (putative ribosome biogenesis protein RLP24, partial [Cucurbita argyrosperma subsp. sororia] >KAG7024200.1 putative ribosome biogenesis protein RLP24, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 310.1 bits (793), Expect = 1.2e-80
Identity = 158/168 (94.05%), Postives = 162/168 (96.43%), Query Frame = 0 

Query: 1   MRLEKCWFCSSTIYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60
           MRLEKCWFCSSTIYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG
Sbjct: 1   MRLEKCWFCSSTIYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60

Query: 61  KDMTQDSTFEFERKRNRPERYDRNLAEETLRAIKKIDKVRADRESRHIARRHQGKKAKEL 120
           KDMTQDSTFEFERKRNRPERYDRNL EETLRAIKKIDKVRA+RESRHIARR QGKKA+EL
Sbjct: 61  KDMTQDSTFEFERKRNRPERYDRNLTEETLRAIKKIDKVRAERESRHIARRMQGKKAQEL 120

Query: 121 REAQKELDQSISLVKAPSALKEDPSLTLPKIKVKVSPSQAEQNQRMEE 169
           REA+KELDQSISLVKAP ALKEDPSLTLPKIK+ V PSQAEQNQ MEE
Sbjct: 121 REAKKELDQSISLVKAPLALKEDPSLTLPKIKLNVEPSQAEQNQSMEE 168

[Close]
BLAST of Lsi04G016620 vs. TAIR 10
Match: AT2G44860.1 (Ribosomal protein L24e family protein )

HSP 1 Score: 227.6 bits (579), Expect = 7.2e-60
Identity = 117/168 (69.64%), Postives = 134/168 (79.76%), Query Frame = 0 

Query: 1   MRLEKCWFCSSTIYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60
           MRLEKCWFCSSTIYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKA+R  HG
Sbjct: 1   MRLEKCWFCSSTIYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAFRAAHG 60

Query: 61  KDMTQDSTFEFERKRNRPERYDRNLAEETLRAIKKIDKVRADRESRHIARRHQGKKAKEL 120
           KDMT+D+TFEFE+KRNRPERYDRN+ E TL AIKKI K+R  RE++HI  R +  K K+L
Sbjct: 61  KDMTKDTTFEFEKKRNRPERYDRNVTENTLMAIKKIAKIRTAREAKHIENRLKPNKQKKL 120

Query: 121 REAQKELDQSISLVKAPSALKEDPSLTLPKIKVKVSPSQAEQNQRMEE 169
            +  KELDQ+I +V+AP A          KIKV VS  ++ QN+ MEE
Sbjct: 121 NDDMKELDQNIHMVQAPGA---------QKIKVDVSEKKSVQNEAMEE 159

[Close]
BLAST of Lsi04G016620 vs. TAIR 10
Match: AT2G44860.2 (Ribosomal protein L24e family protein )

HSP 1 Score: 227.6 bits (579), Expect = 7.2e-60
Identity = 117/168 (69.64%), Postives = 134/168 (79.76%), Query Frame = 0 

Query: 1   MRLEKCWFCSSTIYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60
           MRLEKCWFCSSTIYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKA+R  HG
Sbjct: 1   MRLEKCWFCSSTIYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAFRAAHG 60

Query: 61  KDMTQDSTFEFERKRNRPERYDRNLAEETLRAIKKIDKVRADRESRHIARRHQGKKAKEL 120
           KDMT+D+TFEFE+KRNRPERYDRN+ E TL AIKKI K+R  RE++HI  R +  K K+L
Sbjct: 61  KDMTKDTTFEFEKKRNRPERYDRNVTENTLMAIKKIAKIRTAREAKHIENRLKPNKQKKL 120

Query: 121 REAQKELDQSISLVKAPSALKEDPSLTLPKIKVKVSPSQAEQNQRMEE 169
            +  KELDQ+I +V+AP A          KIKV VS  ++ QN+ MEE
Sbjct: 121 NDDMKELDQNIHMVQAPGA---------QKIKVDVSEKKSVQNEAMEE 159

[Close]
BLAST of Lsi04G016620 vs. TAIR 10
Match: AT3G53020.1 (Ribosomal protein L24e family protein )

HSP 1 Score: 74.7 bits (182), Expect = 7.8e-14
Identity = 51/152 (33.55%), Postives = 75/152 (49.34%), Query Frame = 0 

Query: 1   MRLEKCWFCSSTIYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60
           ++ E C F    IYPG GI+F+R+D+++F F  SKC + F  K  P K+ WT  YR+ H 
Sbjct: 3   LKTELCRFSGQKIYPGRGIRFIRSDSQVFLFLNSKCKRYFHNKLKPSKLAWTAMYRKQHK 62

Query: 61  KDMTQDSTFEFERKRNRPERYDRNLAEETLRAI--KKIDKVRADRESRHIARRH------ 120
           KD  Q++     R   +P  Y R++   TL  I  K+ +K      +R  A R       
Sbjct: 63  KDAAQEAVKRRRRATKKP--YSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK 122

Query: 121 ---QGKKAKELREAQKELDQSISLVKAPSALK 142
                KKAK++  A K+     +  KA +A K
Sbjct: 123 KTKDEKKAKKVEFASKQQKVKANFPKAAAASK 152

[Close]
BLAST of Lsi04G016620 vs. TAIR 10
Match: AT2G36620.1 (ribosomal protein L24 )

HSP 1 Score: 71.6 bits (174), Expect = 6.6e-13
Identity = 53/162 (32.72%), Postives = 79/162 (48.77%), Query Frame = 0 

Query: 1   MRLEKCWFCSSTIYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60
           ++ E C F    IYPG GI+F+R+D+++F F  SKC + F  K  P K+ WT  YR+ H 
Sbjct: 3   LKTELCRFSGQKIYPGRGIRFIRSDSQVFLFLNSKCKRYFHNKLKPSKLCWTAMYRKQHK 62

Query: 61  KDMTQDSTFEFERKRNRPERYDRNLAEETLRAIKKIDKVRADR-ESRHIARRHQGKKAKE 120
           KD  Q++     R   +P  Y R++   TL  I+   K RA++ E R  AR       +E
Sbjct: 63  KDAAQEAVKRRRRATKKP--YSRSIVGATLEVIQ---KKRAEKPEVRDAARE---AALRE 122

Query: 121 LREAQKELDQSISLVKAPSALKEDPSLTLPKIKVKVSPSQAE 162
           ++E  K+        K   A K+  S     I    +P  A+
Sbjct: 123 IKERIKKTKDEKKAKKVEYASKQQKSQVKGNIPKSAAPKAAK 156

The following BLAST results are available for this feature:
BLAST of Lsi04G016620 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
O221651.0e-5869.64Probable ribosome biogenesis protein RLP24 OS=Arabidopsis thaliana OX=3702 GN=At... [more]
Q86B051.3e-4255.63Probable ribosome biogenesis protein RLP24 OS=Dictyostelium discoideum OX=44689 ... [more]
Q3SZ122.4e-3955.24Probable ribosome biogenesis protein RLP24 OS=Bos taurus OX=9913 GN=RSL24D1 PE=2... [more]
Q99L282.4e-3955.24Probable ribosome biogenesis protein RLP24 OS=Mus musculus OX=10090 GN=Rsl24d1 P... [more]
Q9UHA33.1e-3955.24Probable ribosome biogenesis protein RLP24 OS=Homo sapiens OX=9606 GN=RSL24D1 PE... [more]
BLAST of Lsi04G016620 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1ILW28.9e-8295.24probable ribosome biogenesis protein RLP24 OS=Cucurbita maxima OX=3661 GN=LOC111... [more]
A0A6J1C1W99.8e-8194.05probable ribosome biogenesis protein RLP24 OS=Momordica charantia OX=3673 GN=LOC... [more]
A0A6J1D3M82.9e-8093.45probable ribosome biogenesis protein RLP24 OS=Momordica charantia OX=3673 GN=LOC... [more]
A0A6J1F7I93.2e-7992.86probable ribosome biogenesis protein RLP24 OS=Cucurbita moschata OX=3662 GN=LOC1... [more]
A0A6J1KWV23.0e-7788.69probable ribosome biogenesis protein RLP24 OS=Cucurbita maxima OX=3661 GN=LOC111... [more]
BLAST of Lsi04G016620 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038905540.17.5e-8396.43probable ribosome biogenesis protein RLP24 isoform X1 [Benincasa hispida][more]
XP_038905541.17.5e-8396.43probable ribosome biogenesis protein RLP24 isoform X2 [Benincasa hispida] >XP_03... [more]
XP_038903115.12.2e-8295.24probable ribosome biogenesis protein RLP24 [Benincasa hispida][more]
XP_022976358.11.8e-8195.24probable ribosome biogenesis protein RLP24 [Cucurbita maxima] >XP_022976359.1 pr... [more]
KAG6591317.11.2e-8094.05putative ribosome biogenesis protein RLP24, partial [Cucurbita argyrosperma subs... [more]
BLAST of Lsi04G016620 vs. TAIR 10
Match NameE-valueIdentityDescription
AT2G44860.17.2e-6069.64Ribosomal protein L24e family protein [more]
AT2G44860.27.2e-6069.64Ribosomal protein L24e family protein [more]
AT3G53020.17.8e-1433.55Ribosomal protein L24e family protein [more]
AT2G36620.16.6e-1332.72ribosomal protein L24 [more]
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 159..168
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 103..168
NoneNo IPR availablePANTHERPTHR10792:SF36BNAA04G10330D PROTEINcoord: 1..168
NoneNo IPR availableSUPERFAMILY57716Glucocorticoid receptor-like (DNA-binding domain)coord: 4..56
IPR011017TRASH domainSMARTSM007464TRASHcoord: 6..44
e-value: 2.6E-12
score: 56.9
IPR038630Ribosomal protein L24e/L24 superfamilyGENE3D2.30.170.20Ribosomal protein L24ecoord: 1..68
e-value: 2.9E-35
score: 122.1
IPR000988Ribosomal protein L24e-relatedPFAMPF01246Ribosomal_L24ecoord: 1..65
e-value: 2.1E-34
score: 117.6
IPR000988Ribosomal protein L24e-relatedPANTHERPTHR1079260S RIBOSOMAL PROTEIN L24coord: 1..168
IPR000988Ribosomal protein L24e-relatedCDDcd00472Ribosomal_L24e_L24coord: 1..54
e-value: 5.90291E-31
score: 104.577
IPR023442Ribosomal protein L24e, conserved sitePROSITEPS01073RIBOSOMAL_L24Ecoord: 8..25

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi04G016620.1Lsi04G016620.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042273 ribosomal large subunit biogenesis
cellular_component GO:0005730 nucleolus
molecular_function GO:0003824 catalytic activity