Lsi04G015900 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi04G015900
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Photosystem I P700 chlorophyll a apoprotein A1
Location	chr04: 23417640 .. 23420653 (+)
RNA-Seq Expression	Lsi04G015900
Synteny	Lsi04G015900

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTTGGAATGCCACAATAGTAAAAGAGGCTGGGTGTGTATCCAAATATGTTTGAAGTAATTAGTTTCTTAAGATGTCCTGCAATTATTCAAGGAAAAAATGTAAACTTATTCCATCTCAAAATAACACCATACCAAGATAACTATCACTTTTATCTTATTCACAATGTACAAAATGTATCCACTTTCCTCACAGAGAGATGAGACATTCATGACACACCAGGACTTCATTTAAAAGCTATACTTCATCAACTAAGACACTTTTGTTCTGAAAATCATACCCGAAATCAGCACAAATCACGGTAGTAATTTATTATGTATAAGCTTCATACAAATTTGTACACGCAAGGGAAATATATGCATACCATTACTTTTCTAGCCATCAAGCTTACTAACGCAGTTATGGTAATTCGACTCAACCTACTTTGATCCACGTCCATCTATCAAAACAAAATAAATTAGCACGATTACATTATGGTCTAAAAAGGATGAATATGTTGATAACAAAGAATTCCTGAATTCCTGAAACTATGCGAAATGTTGTACCTTCTGAATGGTAATAAAATGACAATCAAACACCTCATCTGCATAACTGACCGATGGGCCACCCCCACCGTAATTGGGGAGGTGAATCTACTTGCCAGACTATAAGAGTGTAGACTGATCGACAGTATGTTCACCATCTGAATTTAAGAAATATGCTTGTAGAGTCTGTGATTTGATACCAGTCATTCGAAAAGACAACAATGTCAGCGTCGTATTACTGTGTTGTCATGTTGTGTTTCGCAATGGAAGCTCCTTCGGGGTGATGTCAATATGTTAATCCCTTATCTTCTCCGATTCCTTGACAAACGCTCACTGTTTGAACCATTTTAAACAGAATAACACCCAACTGTATTTGAATATCTTGAGTTGTCGAAGTGAAGATTAGTTTCGTATTATTTAATGAGCATTAGGTCCACTTACTTTTTATTTTTTTTGTTGATTTCGAATCTTTATAATTGATTGGAATAATGGAAAATAGGAATATTTTTTAATTCAAGGAAACAACTTATCATGATTCATGACTTTGCGGAGACCTGTGTTTTTGGTAAACAGTCGCCCGGGCTTGGTCACTGCGACCCCCTTTGTGAGGAGGCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCGAGTTCCTTAGAGAGAGTTGTCTCGCGCCCCTAAGTATTCTCTACCTACCCACCTGTGTCGGTTTCGGGTACAGGTACCCTTTTGTTGAAGGTCGTTCGAGCTTTTCCTGGGAGTATGGCATGGGTTACTTCAGCGCCGTAGCGCCTGGTACTCAAACATTGGCTCGAGGTATTTTCTGACTCGTACCGATCAGAATCTGACCCCACGAGAAATTGAGCAAAAGGTTGCCGAATTGGCCTATTTCTTGCGTGTACCAATTGAAGTTTTTTGAAAAATGAAGTTTAGAATGAATTTAGTTCGTAACAAGAGGGATAAAACTGGAATGAAAGAATAGTCTTTTTTTATAGACCATAGTAATAGTATAACTTAACTGGAATTTCTTCAGAATGCTCATTTGACCCAAAGCATATGGGGAACAGTGGTAGAGCGCGCCCCGGATAATTGCGTCGTTGTGCCTGGGCTGTGAGGGCTCTCAGCCACATGGATAGTTCAATGTGCTCATCAGCGCCTGACCCTAAGATGTGGATCATCCAAGGCATATTAGCATGGCGTACTTCTCTTGTTTGAACCGGGGTTTGAAACCAAACTTCTCCTCAGGAGGATAGATGGGGCGATTCAGGTGAGATCCAATCTATATACTGCTTTTGGGCAACCCTCTCAACAACTAAGAGATCCATTCGAGGAACACGGGGACTAGTTAAAATGAAGTTTTCCGAAAAAACCTGCTAGTGGAGGAAGATCTCCTAAGGATAAGAGACATAGGGCTAAAGAGAGAGCCAAAAAAGGATGTTTTGTGTATAATCCTGCATAATCTCGAATGTTATCAGTTTCGATACGTAGACCAAATGATACAATGCGAGCAAAAGTTCATGTTCTTACCACAAGCTTTTAATAATATGGTTGTGATCTGTCATTACGTGCGACTATCTCCACTATAGAAAGAAAAAAAAAAGAGCAAATTCGCTAATAAATACTAAAAAAAAAATAGGCTTTCTACATATGTATTGTCCAAAAAAATAGGTTTTCTACATATGTATTGTCCAAACTAACGATTTGTATCAGCTGTAGCAAAGAAAGAAACTTCATAGAAGTAGAAATATGAAGAAATAGGTATGCCTAGATACTTTATTCTATGGATAAAGGATCTAATTGATAGAAGAAGCACCGTAAAGATCAATTAGTCAGGTTAAAACTGCTTACTTATATCATGATATAAGATCAAAATGAAGGAATCCACAGAAAAAAAATACTCGGGTTTCACACACCATTTAAGAGAGAGAGAATAAGAGAGGCGAGGGCTTTCGCATTTCTTAAATGCATCATTATAAGAAAATAAGAAAGAACAATCACATTCGATCTATATCTAATACTAGACTCTTAAGCATAAGGTTGTTTAAAAGGGCAATCTTTAGTCTGATATGATATCGAATATTTTTCTATATATCTTAGAATATACTATTATTATATATAATAATAATACTCTGGGACGGAAGGATTCGAACCTCCGAATAGCGAGACCAAAACCCGTTGCCTTACCCAATAGATCGTGTACTTAGGCATCGTGATGCAATCATATCACATCTGAACTGGGTGTGTATATTTTTAGGCTTTCACAGTTTTGGTTTGTATATTCATAATGATACCATGAGTGCTTTAGGGCGTCCCCAAGATATGTTTTCAGATACCGCTATACAATTACAACCCGTCTTTGCTCAATGGATACAAAACACCCATGCTTTAGCACCTAGTATAACGGCCCCCGGTGCAACAACAGGCACCAGTTTGACTTGGGGGCGGCATCCTGGACTTAATCACTACAAATTGTTTAGCAAACCCTAA

mRNA sequence

ATGAGTTGGAATGCCACAATAGTAAAAGAGGCTGGAGTCTGTGATTTGATACCAGTCATTCGAAAAGACAACAATGTCAGCGTCGTATTACTGTGTTGTCATGTTGTGTTTCGCAATGGAAGCTCCTTCGGGTCGCCCGGGCTTGGTCACTGCGACCCCCTTTGTGAGGAGGCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCGAGTTCCTTAGAGAGAGTTGTCTCGCGCCCCTAAGTATTCTCTACCTACCCACCTGTGTCGGTTTCGGGTACAGGTACCCTTTTGTTGAAGGTCGTTCGAGCTTTTCCTGGGAGTATGGCATGGGTTACTTCAGCGCCGTAGCGCCTGGTACTCAAACATTGGCTCGAGATCGTGTACTTAGGCATCGTGATGCAATCATATCACATCTGAACTGGGTGTGTATATTTTTAGGCTTTCACAGTTTTGGTTTGTATATTCATAATGATACCATGAGTGCTTTAGGGCGTCCCCAAGATATGTTTTCAGATACCGCTATACAATTACAACCCGTCTTTGCTCAATGGATACAAAACACCCATGCTTTAGCACCTAGTATAACGGCCCCCGGTGCAACAACAGGCACCAGTTTGACTTGGGGGCGGCATCCTGGACTTAATCACTACAAATTGTTTAGCAAACCCTAA

Coding sequence (CDS)

ATGAGTTGGAATGCCACAATAGTAAAAGAGGCTGGAGTCTGTGATTTGATACCAGTCATTCGAAAAGACAACAATGTCAGCGTCGTATTACTGTGTTGTCATGTTGTGTTTCGCAATGGAAGCTCCTTCGGGTCGCCCGGGCTTGGTCACTGCGACCCCCTTTGTGAGGAGGCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCGAGTTCCTTAGAGAGAGTTGTCTCGCGCCCCTAAGTATTCTCTACCTACCCACCTGTGTCGGTTTCGGGTACAGGTACCCTTTTGTTGAAGGTCGTTCGAGCTTTTCCTGGGAGTATGGCATGGGTTACTTCAGCGCCGTAGCGCCTGGTACTCAAACATTGGCTCGAGATCGTGTACTTAGGCATCGTGATGCAATCATATCACATCTGAACTGGGTGTGTATATTTTTAGGCTTTCACAGTTTTGGTTTGTATATTCATAATGATACCATGAGTGCTTTAGGGCGTCCCCAAGATATGTTTTCAGATACCGCTATACAATTACAACCCGTCTTTGCTCAATGGATACAAAACACCCATGCTTTAGCACCTAGTATAACGGCCCCCGGTGCAACAACAGGCACCAGTTTGACTTGGGGGCGGCATCCTGGACTTAATCACTACAAATTGTTTAGCAAACCCTAA

Protein sequence

MSWNATIVKEAGVCDLIPVIRKDNNVSVVLLCCHVVFRNGSSFGSPGLGHCDPLCEEAPLLPKLRGYFAEFLRESCLAPLSILYLPTCVGFGYRYPFVEGRSSFSWEYGMGYFSAVAPGTQTLARDRVLRHRDAIISHLNWVCIFLGFHSFGLYIHNDTMSALGRPQDMFSDTAIQLQPVFAQWIQNTHALAPSITAPGATTGTSLTWGRHPGLNHYKLFSKP

Homology

[Close]

BLAST of Lsi04G015900 vs. ExPASy Swiss-Prot
Match: Q2QD89 (Photosystem I P700 chlorophyll a apoprotein A1 OS=Cucumis sativus OX=3659 GN=psaA PE=3 SV=1)

HSP 1 Score: 177.9 bits (450), Expect = 1.2e-43
Identity = 83/84 (98.81%), Postives = 83/84 (98.81%), Query Frame = 0


Query: 126 DRVLRHRDAIISHLNWVCIFLGFHSFGLYIHNDTMSALGRPQDMFSDTAIQLQPVFAQWI 185
           DRVLRHRDAIISHLNWVCIFLGFHSFGLYIHNDTMSALGRPQDMFSDTAIQLQPVFAQWI
Sbjct: 425 DRVLRHRDAIISHLNWVCIFLGFHSFGLYIHNDTMSALGRPQDMFSDTAIQLQPVFAQWI 484

Query: 186 QNTHALAPSITAPGATTGTSLTWG 210
           QNTHALAP ITAPGATTGTSLTWG
Sbjct: 485 QNTHALAPRITAPGATTGTSLTWG 508

[Close]

BLAST of Lsi04G015900 vs. ExPASy Swiss-Prot
Match: P58310 (Photosystem I P700 chlorophyll a apoprotein A1 OS=Lotus japonicus OX=34305 GN=psaA PE=3 SV=1)

HSP 1 Score: 177.9 bits (450), Expect = 1.2e-43
Identity = 82/84 (97.62%), Postives = 83/84 (98.81%), Query Frame = 0


Query: 126 DRVLRHRDAIISHLNWVCIFLGFHSFGLYIHNDTMSALGRPQDMFSDTAIQLQPVFAQWI 185
           DRVLRHRDAIISHLNWVCIFLGFHSFGLYIHNDTMSALGRPQDMFSDTAIQLQP+FAQWI
Sbjct: 425 DRVLRHRDAIISHLNWVCIFLGFHSFGLYIHNDTMSALGRPQDMFSDTAIQLQPIFAQWI 484

Query: 186 QNTHALAPSITAPGATTGTSLTWG 210
           QNTHALAP ITAPGATTGTSLTWG
Sbjct: 485 QNTHALAPGITAPGATTGTSLTWG 508

[Close]

BLAST of Lsi04G015900 vs. ExPASy Swiss-Prot
Match: Q06FW5 (Photosystem I P700 chlorophyll a apoprotein A1 OS=Pelargonium hortorum OX=4031 GN=psaA PE=3 SV=1)

HSP 1 Score: 176.0 bits (445), Expect = 4.7e-43
Identity = 82/84 (97.62%), Postives = 82/84 (97.62%), Query Frame = 0


Query: 126 DRVLRHRDAIISHLNWVCIFLGFHSFGLYIHNDTMSALGRPQDMFSDTAIQLQPVFAQWI 185
           DRVLRHRDAIISHLNWVCIFLGFHSFGLYIHNDTMSALGRPQDMFSDTAIQLQPVFAQWI
Sbjct: 425 DRVLRHRDAIISHLNWVCIFLGFHSFGLYIHNDTMSALGRPQDMFSDTAIQLQPVFAQWI 484

Query: 186 QNTHALAPSITAPGATTGTSLTWG 210
           QNTHALAP  TAPGATTGTSLTWG
Sbjct: 485 QNTHALAPGSTAPGATTGTSLTWG 508

[Close]

BLAST of Lsi04G015900 vs. ExPASy Swiss-Prot
Match: Q6EW48 (Photosystem I P700 chlorophyll a apoprotein A1 OS=Nymphaea alba OX=34301 GN=psaA PE=3 SV=1)

HSP 1 Score: 175.6 bits (444), Expect = 6.1e-43
Identity = 81/84 (96.43%), Postives = 82/84 (97.62%), Query Frame = 0


Query: 126 DRVLRHRDAIISHLNWVCIFLGFHSFGLYIHNDTMSALGRPQDMFSDTAIQLQPVFAQWI 185
           DRVLRHRDAIISHLNWVCIFLGFHSFGLYIHNDTMSALGRPQDMFSDTAIQLQP+FAQWI
Sbjct: 425 DRVLRHRDAIISHLNWVCIFLGFHSFGLYIHNDTMSALGRPQDMFSDTAIQLQPIFAQWI 484

Query: 186 QNTHALAPSITAPGATTGTSLTWG 210
           QNTHALAPS TAPGAT GTSLTWG
Sbjct: 485 QNTHALAPSATAPGATAGTSLTWG 508

[Close]

BLAST of Lsi04G015900 vs. ExPASy Swiss-Prot
Match: Q0G9W2 (Photosystem I P700 chlorophyll a apoprotein A1 OS=Daucus carota OX=4039 GN=psaA PE=3 SV=1)

HSP 1 Score: 174.1 bits (440), Expect = 1.8e-42
Identity = 81/84 (96.43%), Postives = 81/84 (96.43%), Query Frame = 0


Query: 126 DRVLRHRDAIISHLNWVCIFLGFHSFGLYIHNDTMSALGRPQDMFSDTAIQLQPVFAQWI 185
           DRVLRHRDAIISHLNW CIFLGFHSFGLYIHNDTMSALGRPQDMFSDTAIQLQPVFAQWI
Sbjct: 425 DRVLRHRDAIISHLNWACIFLGFHSFGLYIHNDTMSALGRPQDMFSDTAIQLQPVFAQWI 484

Query: 186 QNTHALAPSITAPGATTGTSLTWG 210
           QNTHALAPS TAPGATT TSLTWG
Sbjct: 485 QNTHALAPSATAPGATTSTSLTWG 508

[Close]

BLAST of Lsi04G015900 vs. ExPASy TrEMBL
Match: A0A410HF85 (Photosystem I P700 chlorophyll a apoprotein A1 OS=Trichosanthes kirilowii OX=3677 GN=psaA PE=3 SV=1)

HSP 1 Score: 179.9 bits (455), Expect = 1.2e-41
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 0


Query: 126 DRVLRHRDAIISHLNWVCIFLGFHSFGLYIHNDTMSALGRPQDMFSDTAIQLQPVFAQWI 185
           DRVLRHRDAIISHLNWVCIFLGFHSFGLYIHNDTMSALGRPQDMFSDTAIQLQPVFAQWI
Sbjct: 425 DRVLRHRDAIISHLNWVCIFLGFHSFGLYIHNDTMSALGRPQDMFSDTAIQLQPVFAQWI 484

Query: 186 QNTHALAPSITAPGATTGTSLTWG 210
           QNTHALAPSITAPGATTGTSLTWG
Sbjct: 485 QNTHALAPSITAPGATTGTSLTWG 508

[Close]

BLAST of Lsi04G015900 vs. ExPASy TrEMBL
Match: A0A1P8LDX9 (Photosystem I P700 chlorophyll a apoprotein A1 OS=Citrullus mucosospermus OX=519315 GN=psaA PE=3 SV=1)

HSP 1 Score: 179.9 bits (455), Expect = 1.2e-41
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 0


Query: 126 DRVLRHRDAIISHLNWVCIFLGFHSFGLYIHNDTMSALGRPQDMFSDTAIQLQPVFAQWI 185
           DRVLRHRDAIISHLNWVCIFLGFHSFGLYIHNDTMSALGRPQDMFSDTAIQLQPVFAQWI
Sbjct: 425 DRVLRHRDAIISHLNWVCIFLGFHSFGLYIHNDTMSALGRPQDMFSDTAIQLQPVFAQWI 484

Query: 186 QNTHALAPSITAPGATTGTSLTWG 210
           QNTHALAPSITAPGATTGTSLTWG
Sbjct: 485 QNTHALAPSITAPGATTGTSLTWG 508

[Close]

BLAST of Lsi04G015900 vs. ExPASy TrEMBL
Match: A0A6M3RWM8 (Photosystem I P700 chlorophyll a apoprotein A1 OS=Trichosanthes kirilowii var. japonica OX=61011 GN=psaA PE=3 SV=1)

HSP 1 Score: 179.9 bits (455), Expect = 1.2e-41
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 0


Query: 126 DRVLRHRDAIISHLNWVCIFLGFHSFGLYIHNDTMSALGRPQDMFSDTAIQLQPVFAQWI 185
           DRVLRHRDAIISHLNWVCIFLGFHSFGLYIHNDTMSALGRPQDMFSDTAIQLQPVFAQWI
Sbjct: 425 DRVLRHRDAIISHLNWVCIFLGFHSFGLYIHNDTMSALGRPQDMFSDTAIQLQPVFAQWI 484

Query: 186 QNTHALAPSITAPGATTGTSLTWG 210
           QNTHALAPSITAPGATTGTSLTWG
Sbjct: 485 QNTHALAPSITAPGATTGTSLTWG 508

[Close]

BLAST of Lsi04G015900 vs. ExPASy TrEMBL
Match: A0A2Z2CGB0 (Photosystem I P700 chlorophyll a apoprotein A1 OS=Coccinia grandis OX=387127 GN=psaA PE=3 SV=1)

HSP 1 Score: 179.9 bits (455), Expect = 1.2e-41
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 0


Query: 126 DRVLRHRDAIISHLNWVCIFLGFHSFGLYIHNDTMSALGRPQDMFSDTAIQLQPVFAQWI 185
           DRVLRHRDAIISHLNWVCIFLGFHSFGLYIHNDTMSALGRPQDMFSDTAIQLQPVFAQWI
Sbjct: 425 DRVLRHRDAIISHLNWVCIFLGFHSFGLYIHNDTMSALGRPQDMFSDTAIQLQPVFAQWI 484

Query: 186 QNTHALAPSITAPGATTGTSLTWG 210
           QNTHALAPSITAPGATTGTSLTWG
Sbjct: 485 QNTHALAPSITAPGATTGTSLTWG 508

[Close]

BLAST of Lsi04G015900 vs. ExPASy TrEMBL
Match: X2F5B1 (Photosystem I P700 chlorophyll a apoprotein A1 OS=Lagenaria siceraria OX=3668 GN=psaA PE=3 SV=1)

HSP 1 Score: 179.9 bits (455), Expect = 1.2e-41
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 0


Query: 126 DRVLRHRDAIISHLNWVCIFLGFHSFGLYIHNDTMSALGRPQDMFSDTAIQLQPVFAQWI 185
           DRVLRHRDAIISHLNWVCIFLGFHSFGLYIHNDTMSALGRPQDMFSDTAIQLQPVFAQWI
Sbjct: 425 DRVLRHRDAIISHLNWVCIFLGFHSFGLYIHNDTMSALGRPQDMFSDTAIQLQPVFAQWI 484

Query: 186 QNTHALAPSITAPGATTGTSLTWG 210
           QNTHALAPSITAPGATTGTSLTWG
Sbjct: 485 QNTHALAPSITAPGATTGTSLTWG 508

[Close]

BLAST of Lsi04G015900 vs. NCBI nr
Match: YP_009751738.1 (photosystem I P700 apoprotein A1 [Herpetospermum pedunculosum] >QIT04471.1 photosystem I P700 apoprotein A1 [Herpetospermum pedunculosum] >QJR52956.1 photosystem I P700 apoprotein A1 [Herpetospermum pedunculosum])

HSP 1 Score: 179.9 bits (455), Expect = 2.5e-41
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 0


Query: 126 DRVLRHRDAIISHLNWVCIFLGFHSFGLYIHNDTMSALGRPQDMFSDTAIQLQPVFAQWI 185
           DRVLRHRDAIISHLNWVCIFLGFHSFGLYIHNDTMSALGRPQDMFSDTAIQLQPVFAQWI
Sbjct: 425 DRVLRHRDAIISHLNWVCIFLGFHSFGLYIHNDTMSALGRPQDMFSDTAIQLQPVFAQWI 484

Query: 186 QNTHALAPSITAPGATTGTSLTWG 210
           QNTHALAPSITAPGATTGTSLTWG
Sbjct: 485 QNTHALAPSITAPGATTGTSLTWG 508

[Close]

BLAST of Lsi04G015900 vs. NCBI nr
Match: YP_009752243.1 (photosystem I P700 apoprotein A1 [Trichosanthes baviensis] >YP_009753789.1 photosystem I P700 apoprotein A1 [Trichosanthes pilosa] >QIT04217.1 photosystem I P700 apoprotein A1 [Trichosanthes baviensis] >QIT05653.1 photosystem I P700 apoprotein A1 [Trichosanthes pilosa])

HSP 1 Score: 179.9 bits (455), Expect = 2.5e-41
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 0


Query: 126 DRVLRHRDAIISHLNWVCIFLGFHSFGLYIHNDTMSALGRPQDMFSDTAIQLQPVFAQWI 185
           DRVLRHRDAIISHLNWVCIFLGFHSFGLYIHNDTMSALGRPQDMFSDTAIQLQPVFAQWI
Sbjct: 425 DRVLRHRDAIISHLNWVCIFLGFHSFGLYIHNDTMSALGRPQDMFSDTAIQLQPVFAQWI 484

Query: 186 QNTHALAPSITAPGATTGTSLTWG 210
           QNTHALAPSITAPGATTGTSLTWG
Sbjct: 485 QNTHALAPSITAPGATTGTSLTWG 508

[Close]

BLAST of Lsi04G015900 vs. NCBI nr
Match: YP_009753174.1 (photosystem I P700 apoprotein A1 [Trichosanthes truncata] >QIT06246.1 photosystem I P700 apoprotein A1 [Trichosanthes truncata])

HSP 1 Score: 179.9 bits (455), Expect = 2.5e-41
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 0


Query: 126 DRVLRHRDAIISHLNWVCIFLGFHSFGLYIHNDTMSALGRPQDMFSDTAIQLQPVFAQWI 185
           DRVLRHRDAIISHLNWVCIFLGFHSFGLYIHNDTMSALGRPQDMFSDTAIQLQPVFAQWI
Sbjct: 425 DRVLRHRDAIISHLNWVCIFLGFHSFGLYIHNDTMSALGRPQDMFSDTAIQLQPVFAQWI 484

Query: 186 QNTHALAPSITAPGATTGTSLTWG 210
           QNTHALAPSITAPGATTGTSLTWG
Sbjct: 485 QNTHALAPSITAPGATTGTSLTWG 508

[Close]

BLAST of Lsi04G015900 vs. NCBI nr
Match: YP_009447450.1 (photosystem I P700 chlorophyll a apoprotein A1 [Cucurbita maxima] >ALO22061.1 PsaA [Cucurbita ecuadorensis] >ALO22332.1 PsaA [Cucurbita maxima subsp. andreana] >ATY69900.1 photosystem I P700 chlorophyll a apoprotein A1 [Cucurbita maxima])

HSP 1 Score: 179.9 bits (455), Expect = 2.5e-41
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 0


Query: 126 DRVLRHRDAIISHLNWVCIFLGFHSFGLYIHNDTMSALGRPQDMFSDTAIQLQPVFAQWI 185
           DRVLRHRDAIISHLNWVCIFLGFHSFGLYIHNDTMSALGRPQDMFSDTAIQLQPVFAQWI
Sbjct: 425 DRVLRHRDAIISHLNWVCIFLGFHSFGLYIHNDTMSALGRPQDMFSDTAIQLQPVFAQWI 484

Query: 186 QNTHALAPSITAPGATTGTSLTWG 210
           QNTHALAPSITAPGATTGTSLTWG
Sbjct: 485 QNTHALAPSITAPGATTGTSLTWG 508

[Close]

BLAST of Lsi04G015900 vs. NCBI nr
Match: YP_009447535.1 (photosystem I P700 chlorophyll a apoprotein A1 [Cucurbita moschata] >YP_009505080.1 photosystem I P700 chlorophyll a apoprotein A1 [Cucurbita pepo] >ALO21767.1 PsaA [Cucurbita argyrosperma] >ALO21803.1 PsaA [Cucurbita argyrosperma var. palmeri] >ALO21842.1 PsaA [Cucurbita argyrosperma subsp. sororia] >ALO21919.1 PsaA [Cucurbita cordata] >ALO21989.1 PsaA [Cucurbita digitata] >ALO22130.1 PsaA [Cucurbita ficifolia] >ALO22171.1 PsaA [Cucurbita foetidissima] >ALO22221.1 PsaA [Cucurbita lundelliana] >ALO22468.1 PsaA [Cucurbita okeechobeensis] >ALO22517.1 PsaA [Cucurbita okeechobeensis subsp. martinezii] >ALO22544.1 PsaA [Cucurbita pepo subsp. fraterna] >ALO22638.1 PsaA [Cucurbita pepo subsp. ovifera] >ALO22714.1 PsaA [Cucurbita pepo var. ozarkana] >ALO22742.1 PsaA [Cucurbita pepo subsp. pepo] >ALO22858.1 PsaA [Cucurbita pepo var. texana] >ALO22905.1 PsaA [Cucurbita pedatifolia])

HSP 1 Score: 179.9 bits (455), Expect = 2.5e-41
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 0


Query: 126 DRVLRHRDAIISHLNWVCIFLGFHSFGLYIHNDTMSALGRPQDMFSDTAIQLQPVFAQWI 185
           DRVLRHRDAIISHLNWVCIFLGFHSFGLYIHNDTMSALGRPQDMFSDTAIQLQPVFAQWI
Sbjct: 425 DRVLRHRDAIISHLNWVCIFLGFHSFGLYIHNDTMSALGRPQDMFSDTAIQLQPVFAQWI 484

Query: 186 QNTHALAPSITAPGATTGTSLTWG 210
           QNTHALAPSITAPGATTGTSLTWG
Sbjct: 485 QNTHALAPSITAPGATTGTSLTWG 508

[Close]

BLAST of Lsi04G015900 vs. TAIR 10
Match: ATCG00350.1 (Photosystem I, PsaA/PsaB protein )

HSP 1 Score: 171.8 bits (434), Expect = 6.3e-43
Identity = 79/84 (94.05%), Postives = 80/84 (95.24%), Query Frame = 0


Query: 126 DRVLRHRDAIISHLNWVCIFLGFHSFGLYIHNDTMSALGRPQDMFSDTAIQLQPVFAQWI 185
           DRVLRHRDAIISHLNWVCIFLGFHSFGLYIHNDTMSALGRPQDMFSDTAIQLQPVFAQWI
Sbjct: 425 DRVLRHRDAIISHLNWVCIFLGFHSFGLYIHNDTMSALGRPQDMFSDTAIQLQPVFAQWI 484

Query: 186 QNTHALAPSITAPGATTGTSLTWG 210
           QNTHALAP +TAPG T  TSLTWG
Sbjct: 485 QNTHALAPGVTAPGETASTSLTWG 508

[Close]

BLAST of Lsi04G015900 vs. TAIR 10
Match: ATCG00340.1 (Photosystem I, PsaA/PsaB protein )

HSP 1 Score: 81.3 bits (199), Expect = 1.1e-15
Identity = 39/88 (44.32%), Postives = 53/88 (60.23%), Query Frame = 0


Query: 127 RVLRHRDAIISHLNWVCIFLGFHSFGLYIHNDTMSALGRPQDMFSDTAIQLQPVFAQWIQ 186
           R+L H++AIISHL+W  +FLGFH+ GLY+HND M A G P+       I ++P+FAQWIQ
Sbjct: 410 RMLDHKEAIISHLSWASLFLGFHTLGLYVHNDVMLAFGTPEKQ-----ILIEPIFAQWIQ 469

Query: 187 NTH--------ALAPSITAPGATTGTSL 207
           + H         L  S + P    G S+
Sbjct: 470 SAHGKTSYGFDVLLSSTSGPAFNAGRSI 492

The following BLAST results are available for this feature:

BLAST of Lsi04G015900 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q2QD89	1.2e-43	98.81	Photosystem I P700 chlorophyll a apoprotein A1 OS=Cucumis sativus OX=3659 GN=psa...	[more]
P58310	1.2e-43	97.62	Photosystem I P700 chlorophyll a apoprotein A1 OS=Lotus japonicus OX=34305 GN=ps...	[more]
Q06FW5	4.7e-43	97.62	Photosystem I P700 chlorophyll a apoprotein A1 OS=Pelargonium hortorum OX=4031 G...	[more]
Q6EW48	6.1e-43	96.43	Photosystem I P700 chlorophyll a apoprotein A1 OS=Nymphaea alba OX=34301 GN=psaA...	[more]
Q0G9W2	1.8e-42	96.43	Photosystem I P700 chlorophyll a apoprotein A1 OS=Daucus carota OX=4039 GN=psaA ...	[more]

BLAST of Lsi04G015900 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A410HF85	1.2e-41	100.00	Photosystem I P700 chlorophyll a apoprotein A1 OS=Trichosanthes kirilowii OX=367...	[more]
A0A1P8LDX9	1.2e-41	100.00	Photosystem I P700 chlorophyll a apoprotein A1 OS=Citrullus mucosospermus OX=519...	[more]
A0A6M3RWM8	1.2e-41	100.00	Photosystem I P700 chlorophyll a apoprotein A1 OS=Trichosanthes kirilowii var. j...	[more]
A0A2Z2CGB0	1.2e-41	100.00	Photosystem I P700 chlorophyll a apoprotein A1 OS=Coccinia grandis OX=387127 GN=...	[more]
X2F5B1	1.2e-41	100.00	Photosystem I P700 chlorophyll a apoprotein A1 OS=Lagenaria siceraria OX=3668 GN...	[more]

BLAST of Lsi04G015900 vs. NCBI nr


Match Name	E-value	Identity	Description
YP_009751738.1	2.5e-41	100.00	photosystem I P700 apoprotein A1 [Herpetospermum pedunculosum] >QIT04471.1 photo...	[more]
YP_009752243.1	2.5e-41	100.00	photosystem I P700 apoprotein A1 [Trichosanthes baviensis] >YP_009753789.1 photo...	[more]
YP_009753174.1	2.5e-41	100.00	photosystem I P700 apoprotein A1 [Trichosanthes truncata] >QIT06246.1 photosyste...	[more]
YP_009447450.1	2.5e-41	100.00	photosystem I P700 chlorophyll a apoprotein A1 [Cucurbita maxima] >ALO22061.1 Ps...	[more]
YP_009447535.1	2.5e-41	100.00	photosystem I P700 chlorophyll a apoprotein A1 [Cucurbita moschata] >YP_00950508...	[more]

BLAST of Lsi04G015900 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00350.1	6.3e-43	94.05	Photosystem I, PsaA/PsaB protein	[more]
ATCG00340.1	1.1e-15	44.32	Photosystem I, PsaA/PsaB protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036408	Photosystem I PsaA/PsaB superfamily	GENE3D	1.20.1130.10	Photosystem I PsaA/PsaB	coord: 116..217 e-value: 2.6E-45 score: 156.4
IPR036408	Photosystem I PsaA/PsaB superfamily	SUPERFAMILY	81558	Photosystem I subunits PsaA/PsaB	coord: 125..218
IPR001280	Photosystem I PsaA/PsaB	PFAM	PF00223	PsaA_PsaB	coord: 126..191 e-value: 5.0E-36 score: 124.2
IPR006243	Photosystem I PsaA	PANTHER	PTHR30128:SF60	PHOTOSYSTEM I P700 CHLOROPHYLL A APOPROTEIN A1	coord: 126..215
None	No IPR available	PANTHER	PTHR30128	OUTER MEMBRANE PROTEIN, OMPA-RELATED	coord: 126..215

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi04G015900.1	Lsi04G015900.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0022900	electron transport chain
biological_process	GO:0015979	photosynthesis
biological_process	GO:0018298	protein-chromophore linkage
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0009522	photosystem I
cellular_component	GO:0009579	thylakoid
molecular_function	GO:0051539	4 iron, 4 sulfur cluster binding
molecular_function	GO:0016168	chlorophyll binding
molecular_function	GO:0009055	electron transfer activity
molecular_function	GO:0000287	magnesium ion binding
molecular_function	GO:0046872	metal ion binding