Lsi04G015820 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi04G015820
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	polyadenylate-binding protein RBP47-like
Location	chr04: 23379924 .. 23380307 (+)
RNA-Seq Expression	Lsi04G015820
Synteny	Lsi04G015820

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAGAGCAACGGTTCTGATTCGCAGCCGCAGGAACCAAATCAACGGCACCAACAGCCGCAGCAGCCGTGGATACCAATGCAGTACCCGCCGCCAACCATGGTAATGCCGCACCATATGATGACGCCGCAGCATTATATGGCACCGCCGCTCCCGCCTCCTTATATGCATTATCACCACCAATATCAGCATCATCATCTCCCTATTCAGCATTCGCAACCGCTACCGGGATCTGGCGGCGAAAATAAGACGATTTGGGTCGGTGACTTGCATCATTGGATGGACGAGAGTTACCTCAATTCCTGCTTTTCTTCCATCGGCGAGGTTCAATTTTCTCTCTTCTTTTTTCACTTATCTCTACGTTTGTACGCGTTTTTATTTTGA

mRNA sequence

ATGCAGAGCAACGGTTCTGATTCGCAGCCGCAGGAACCAAATCAACGGCACCAACAGCCGCAGCAGCCGTGGATACCAATGCAGTACCCGCCGCCAACCATGGTAATGCCGCACCATATGATGACGCCGCAGCATTATATGGCACCGCCGCTCCCGCCTCCTTATATGCATTATCACCACCAATATCAGCATCATCATCTCCCTATTCAGCATTCGCAACCGCTACCGGGATCTGGCGGCGAAAATAAGACGATTTGGGTCGGTGACTTGCATCATTGGATGGACGAGAGTTACCTCAATTCCTGCTTTTCTTCCATCGGCGAGGTTCAATTTTCTCTCTTCTTTTTTCACTTATCTCTACGTTTGTACGCGTTTTTATTTTGA

Coding sequence (CDS)

ATGCAGAGCAACGGTTCTGATTCGCAGCCGCAGGAACCAAATCAACGGCACCAACAGCCGCAGCAGCCGTGGATACCAATGCAGTACCCGCCGCCAACCATGGTAATGCCGCACCATATGATGACGCCGCAGCATTATATGGCACCGCCGCTCCCGCCTCCTTATATGCATTATCACCACCAATATCAGCATCATCATCTCCCTATTCAGCATTCGCAACCGCTACCGGGATCTGGCGGCGAAAATAAGACGATTTGGGTCGGTGACTTGCATCATTGGATGGACGAGAGTTACCTCAATTCCTGCTTTTCTTCCATCGGCGAGGTTCAATTTTCTCTCTTCTTTTTTCACTTATCTCTACGTTTGTACGCGTTTTTATTTTGA

Protein sequence

MQSNGSDSQPQEPNQRHQQPQQPWIPMQYPPPTMVMPHHMMTPQHYMAPPLPPPYMHYHHQYQHHHLPIQHSQPLPGSGGENKTIWVGDLHHWMDESYLNSCFSSIGEVQFSLFFFHLSLRLYAFLF

Homology

[Close]

BLAST of Lsi04G015820 vs. ExPASy Swiss-Prot
Match: Q9SX79 (Polyadenylate-binding protein RBP47C OS=Arabidopsis thaliana OX=3702 GN=RBP47C PE=2 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 2.9e-13
Identity = 49/97 (50.52%), Postives = 58/97 (59.79%), Query Frame = 0


Query: 11  QEPNQRHQQPQQPWIPMQYPPPTMVMPHHMMTPQHYMAPPLPPPYMHYHHQYQHHHLPIQ 70
           +E NQ    P  P   M+Y PPT+++PH MM    Y  PP PP    YH    HHHL  Q
Sbjct: 36  EEENQPKTSPTPPPHWMRY-PPTVIIPHQMM----YAPPPFPP----YHQYPNHHHLHHQ 95

Query: 71  H--SQPLPGSGGENKTIWVGDLHHWMDESYLNSCFSS 106
              ++      GENKTIWVGDLHHWMDE+YLNS F+S
Sbjct: 96  SRGNKHQNAFNGENKTIWVGDLHHWMDEAYLNSSFAS 123

[Close]

BLAST of Lsi04G015820 vs. ExPASy Swiss-Prot
Match: Q9LEB3 (Polyadenylate-binding protein RBP47 OS=Nicotiana plumbaginifolia OX=4092 GN=RBP47 PE=1 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 3.2e-12
Identity = 52/118 (44.07%), Postives = 59/118 (50.00%), Query Frame = 0


Query: 4   NGSD--SQPQEPNQRHQQPQQPWI----------PMQYPPPTMVMPHHMMTPQHYMAPPL 63
           NG D   Q Q+  Q+HQQ QQ W+           MQYP   M M   MM  Q YM    
Sbjct: 2   NGGDMNQQQQQQQQQHQQQQQQWLAMQQYQQQWMAMQYPAAAMAMQQQMMYGQQYM---- 61

Query: 64  PPPYMHYHHQYQHHHLPIQHSQPLPGSGGENKTIWVGDLHHWMDESYLNSCFSSIGEV 110
             PY   H Q Q      Q    +  S  +NKTIW+GDL  WMDESYL+SCFS  GEV
Sbjct: 62  --PYYQQHQQQQKMQ---QSPTQIQSSSEDNKTIWIGDLQQWMDESYLHSCFSQAGEV 110

[Close]

BLAST of Lsi04G015820 vs. ExPASy Swiss-Prot
Match: Q0WW84 (Polyadenylate-binding protein RBP47B OS=Arabidopsis thaliana OX=3702 GN=RBP47B PE=1 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 2.1e-11
Identity = 51/110 (46.36%), Postives = 60/110 (54.55%), Query Frame = 0


Query: 10  PQEPNQRHQQPQQPWIPMQYPPPT---MVMPHHMMTPQHYMAPPLPPPYMHYH---HQY- 69
           PQ+  Q+ QQ QQ    MQYPP     M+    M+   H   P    PY  +H   HQY 
Sbjct: 27  PQQWQQQQQQQQQWMAAMQYPPAAAMMMMQQQQMLMYPHQYVPYNQGPYQQHHPQLHQYG 86

Query: 70  ---QHHHLPIQHSQPLPGSGGENKTIWVGDLHHWMDESYLNSCFSSIGEV 110
              QH H   QH     GSG + KT+WVGDL HWMDE+YL+SCFS  GEV
Sbjct: 87  SYQQHQHQ--QHKAIDRGSGDDVKTLWVGDLLHWMDETYLHSCFSHTGEV 134

[Close]

BLAST of Lsi04G015820 vs. ExPASy Swiss-Prot
Match: Q9SX80 (Polyadenylate-binding protein RBP47C' OS=Arabidopsis thaliana OX=3702 GN=RBP47C' PE=2 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 1.5e-09
Identity = 45/102 (44.12%), Postives = 54/102 (52.94%), Query Frame = 0


Query: 12  EPNQRHQQPQQP---WIPMQYPPPTMVMPHHMMTPQHYMAPPLPPPYMHYHHQYQHHHLP 71
           E NQ    P  P   W  M+YPP        ++ PQ   APP P P+  YH    HHH  
Sbjct: 37  EENQPKTSPTPPPPHW--MRYPP--------VLMPQMMYAPPPPMPFSPYHQYPNHHHFH 96

Query: 72  IQH--SQPLPGSGGENKTIWVGDLHHWMDESYLNSCFSSIGE 109
            Q   ++      GENKTIWVGDL +WMDE+YLNS F+S  E
Sbjct: 97  HQSRGNKHQNAFNGENKTIWVGDLQNWMDEAYLNSAFTSAEE 128

[Close]

BLAST of Lsi04G015820 vs. ExPASy Swiss-Prot
Match: F4I3B3 (Polyadenylate-binding protein RBP47A OS=Arabidopsis thaliana OX=3702 GN=RBP47A PE=2 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 1.9e-09
Identity = 49/118 (41.53%), Postives = 61/118 (51.69%), Query Frame = 0


Query: 6   SDSQPQEPNQRHQQPQQPWIP--MQYPPPTMVM---------PHHMMTPQHYMAPPLPPP 65
           S   PQ+  Q+  Q QQ W+    QYP   M M         PH    P +  A    P 
Sbjct: 30  STPPPQQQQQQQWQQQQQWMAAMQQYPAAAMAMMQQQQMMMYPHPQYAPYNQAAYQQHPQ 89

Query: 66  YMH--YHHQYQHHHLPIQHSQPLPGSGGEN-KTIWVGDLHHWMDESYLNSCFSSIGEV 110
           + +  Y  Q Q HH   Q  QP  GSGG++ KT+WVGDL HWMDE+YL++CFS   EV
Sbjct: 90  FQYAAYQQQQQQHHQSQQ--QPRGGSGGDDVKTLWVGDLLHWMDETYLHTCFSHTNEV 145

[Close]

BLAST of Lsi04G015820 vs. ExPASy TrEMBL
Match: A0A1S3BUU0 (polyadenylate-binding protein RBP47-like OS=Cucumis melo OX=3656 GN=LOC103493523 PE=4 SV=1)

HSP 1 Score: 211.1 bits (536), Expect = 2.8e-51
Identity = 100/110 (90.91%), Postives = 103/110 (93.64%), Query Frame = 0


Query: 1   MQSNGSDSQPQEPNQRHQQPQQPWI-PMQYPPPTMVMPHHMMTPQHYMAPPLPPPYMHYH 60
           MQSNGSDSQPQEPNQRHQQ  QPWI PMQYPPP MVMPHHMMTPQHYMAPPLPPPYMHYH
Sbjct: 1   MQSNGSDSQPQEPNQRHQQQPQPWIPPMQYPPPPMVMPHHMMTPQHYMAPPLPPPYMHYH 60

Query: 61  HQYQHHHLPIQHSQPLPGSGGENKTIWVGDLHHWMDESYLNSCFSSIGEV 110
           HQY HHHLPIQHSQPL GSG ENKTIWVGDLHHWMDESYL+SCFSS+GE+
Sbjct: 61  HQYHHHHLPIQHSQPLKGSGSENKTIWVGDLHHWMDESYLHSCFSSVGEI 110

[Close]

BLAST of Lsi04G015820 vs. ExPASy TrEMBL
Match: A0A0A0L4T7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G639100 PE=4 SV=1)

HSP 1 Score: 204.1 bits (518), Expect = 3.4e-49
Identity = 97/110 (88.18%), Postives = 101/110 (91.82%), Query Frame = 0


Query: 1   MQSNGSDSQPQEPNQRHQQPQQPWI-PMQYPPPTMVMPHHMMTPQHYMAPPLPPPYMHYH 60
           MQ+NGSDSQPQEPNQRHQQ   PWI PMQYPPP MVMPHHMMTPQHYMAPPLPPPYMHYH
Sbjct: 1   MQNNGSDSQPQEPNQRHQQQPHPWIPPMQYPPPPMVMPHHMMTPQHYMAPPLPPPYMHYH 60

Query: 61  HQYQHHHLPIQHSQPLPGSGGENKTIWVGDLHHWMDESYLNSCFSSIGEV 110
           HQY HHHLPIQ SQPL GSG ENKTIWVGDLHHWMDESYL+SCFSS+GE+
Sbjct: 61  HQYHHHHLPIQPSQPLKGSGSENKTIWVGDLHHWMDESYLHSCFSSVGEI 110

[Close]

BLAST of Lsi04G015820 vs. ExPASy TrEMBL
Match: A0A6J1ILR0 (polyadenylate-binding protein RBP47C-like OS=Cucurbita maxima OX=3661 GN=LOC111476746 PE=4 SV=1)

HSP 1 Score: 200.3 bits (508), Expect = 4.9e-48
Identity = 97/110 (88.18%), Postives = 102/110 (92.73%), Query Frame = 0


Query: 1   MQSNGSDSQPQEPNQRHQQPQQPWIPMQYPPPTMVMPHHMMTPQHYMAPPL-PPPYMHYH 60
           MQSNGSDSQPQEPNQRHQQPQ  W+ MQYPPP MVMPHHMMTP HYMAPPL PPPYMHYH
Sbjct: 1   MQSNGSDSQPQEPNQRHQQPQS-WMSMQYPPPAMVMPHHMMTPPHYMAPPLPPPPYMHYH 60

Query: 61  HQYQHHHLPIQHSQPLPGSGGENKTIWVGDLHHWMDESYLNSCFSSIGEV 110
            QYQHHHLPIQHSQPL GSGGENKTIWVGDLHHWMDESYL++CF+SIGE+
Sbjct: 61  PQYQHHHLPIQHSQPLQGSGGENKTIWVGDLHHWMDESYLHTCFASIGEI 109

[Close]

BLAST of Lsi04G015820 vs. ExPASy TrEMBL
Match: A0A6J1FCI8 (polyadenylate-binding protein RBP47C-like OS=Cucurbita moschata OX=3662 GN=LOC111442850 PE=4 SV=1)

HSP 1 Score: 200.3 bits (508), Expect = 4.9e-48
Identity = 97/110 (88.18%), Postives = 102/110 (92.73%), Query Frame = 0


Query: 1   MQSNGSDSQPQEPNQRHQQPQQPWIPMQYPPPTMVMPHHMMTPQHYMAPPL-PPPYMHYH 60
           MQSNGSDSQPQEPNQRHQQPQ  W+ MQYPPP MVMPHHMMTP HYMAPPL PPPYMHYH
Sbjct: 1   MQSNGSDSQPQEPNQRHQQPQS-WMSMQYPPPAMVMPHHMMTPPHYMAPPLPPPPYMHYH 60

Query: 61  HQYQHHHLPIQHSQPLPGSGGENKTIWVGDLHHWMDESYLNSCFSSIGEV 110
            QYQHHHLPIQHSQPL GSGGENKTIWVGDLHHWMDESYL++CF+SIGE+
Sbjct: 61  PQYQHHHLPIQHSQPLQGSGGENKTIWVGDLHHWMDESYLHNCFASIGEI 109

[Close]

BLAST of Lsi04G015820 vs. ExPASy TrEMBL
Match: A0A6J1CHT5 (polyadenylate-binding protein RBP47-like OS=Momordica charantia OX=3673 GN=LOC111011304 PE=4 SV=1)

HSP 1 Score: 196.1 bits (497), Expect = 9.2e-47
Identity = 95/109 (87.16%), Postives = 100/109 (91.74%), Query Frame = 0


Query: 1   MQSNGSDSQPQEPNQRHQQPQQPWIPMQYPPPTMVMPHHMMTPQHYMAPPLPPPYMHYHH 60
           MQSNGSDSQPQEPNQR QQPQQ W+PMQYPP  MVMP HMMTPQ YM PPLPP YMHYHH
Sbjct: 1   MQSNGSDSQPQEPNQRLQQPQQ-WMPMQYPPAAMVMPPHMMTPQPYMPPPLPPQYMHYHH 60

Query: 61  QYQHHHLPIQHSQPLPGSGGENKTIWVGDLHHWMDESYLNSCFSSIGEV 110
           QYQHHHLPIQHSQPL GSGGENKTIWVGDLHHWMDESYL++CF+SIGE+
Sbjct: 61  QYQHHHLPIQHSQPLQGSGGENKTIWVGDLHHWMDESYLHNCFASIGEI 108

[Close]

BLAST of Lsi04G015820 vs. NCBI nr
Match: XP_008452518.1 (PREDICTED: polyadenylate-binding protein RBP47-like [Cucumis melo])

HSP 1 Score: 211.1 bits (536), Expect = 5.7e-51
Identity = 100/110 (90.91%), Postives = 103/110 (93.64%), Query Frame = 0


Query: 1   MQSNGSDSQPQEPNQRHQQPQQPWI-PMQYPPPTMVMPHHMMTPQHYMAPPLPPPYMHYH 60
           MQSNGSDSQPQEPNQRHQQ  QPWI PMQYPPP MVMPHHMMTPQHYMAPPLPPPYMHYH
Sbjct: 1   MQSNGSDSQPQEPNQRHQQQPQPWIPPMQYPPPPMVMPHHMMTPQHYMAPPLPPPYMHYH 60

Query: 61  HQYQHHHLPIQHSQPLPGSGGENKTIWVGDLHHWMDESYLNSCFSSIGEV 110
           HQY HHHLPIQHSQPL GSG ENKTIWVGDLHHWMDESYL+SCFSS+GE+
Sbjct: 61  HQYHHHHLPIQHSQPLKGSGSENKTIWVGDLHHWMDESYLHSCFSSVGEI 110

[Close]

BLAST of Lsi04G015820 vs. NCBI nr
Match: XP_004141245.1 (polyadenylate-binding protein RBP47 [Cucumis sativus] >KAE8649857.1 hypothetical protein Csa_012060 [Cucumis sativus])

HSP 1 Score: 204.1 bits (518), Expect = 7.0e-49
Identity = 97/110 (88.18%), Postives = 101/110 (91.82%), Query Frame = 0


Query: 1   MQSNGSDSQPQEPNQRHQQPQQPWI-PMQYPPPTMVMPHHMMTPQHYMAPPLPPPYMHYH 60
           MQ+NGSDSQPQEPNQRHQQ   PWI PMQYPPP MVMPHHMMTPQHYMAPPLPPPYMHYH
Sbjct: 1   MQNNGSDSQPQEPNQRHQQQPHPWIPPMQYPPPPMVMPHHMMTPQHYMAPPLPPPYMHYH 60

Query: 61  HQYQHHHLPIQHSQPLPGSGGENKTIWVGDLHHWMDESYLNSCFSSIGEV 110
           HQY HHHLPIQ SQPL GSG ENKTIWVGDLHHWMDESYL+SCFSS+GE+
Sbjct: 61  HQYHHHHLPIQPSQPLKGSGSENKTIWVGDLHHWMDESYLHSCFSSVGEI 110

[Close]

BLAST of Lsi04G015820 vs. NCBI nr
Match: KAG6591362.1 (Polyadenylate-binding protein RBP47C, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 200.3 bits (508), Expect = 1.0e-47
Identity = 97/110 (88.18%), Postives = 102/110 (92.73%), Query Frame = 0


Query: 1   MQSNGSDSQPQEPNQRHQQPQQPWIPMQYPPPTMVMPHHMMTPQHYMAPPL-PPPYMHYH 60
           MQSNGSDSQPQEPNQRHQQPQ  W+ MQYPPP MVMPHHMMTP HYMAPPL PPPYMHYH
Sbjct: 1   MQSNGSDSQPQEPNQRHQQPQS-WMSMQYPPPAMVMPHHMMTPPHYMAPPLPPPPYMHYH 60

Query: 61  HQYQHHHLPIQHSQPLPGSGGENKTIWVGDLHHWMDESYLNSCFSSIGEV 110
            QYQHHHLPIQHSQPL GSGGENKTIWVGDLHHWMDESYL++CF+SIGE+
Sbjct: 61  PQYQHHHLPIQHSQPLQGSGGENKTIWVGDLHHWMDESYLHNCFASIGEI 109

[Close]

BLAST of Lsi04G015820 vs. NCBI nr
Match: XP_022976308.1 (polyadenylate-binding protein RBP47C-like [Cucurbita maxima])

HSP 1 Score: 200.3 bits (508), Expect = 1.0e-47
Identity = 97/110 (88.18%), Postives = 102/110 (92.73%), Query Frame = 0


Query: 1   MQSNGSDSQPQEPNQRHQQPQQPWIPMQYPPPTMVMPHHMMTPQHYMAPPL-PPPYMHYH 60
           MQSNGSDSQPQEPNQRHQQPQ  W+ MQYPPP MVMPHHMMTP HYMAPPL PPPYMHYH
Sbjct: 1   MQSNGSDSQPQEPNQRHQQPQS-WMSMQYPPPAMVMPHHMMTPPHYMAPPLPPPPYMHYH 60

Query: 61  HQYQHHHLPIQHSQPLPGSGGENKTIWVGDLHHWMDESYLNSCFSSIGEV 110
            QYQHHHLPIQHSQPL GSGGENKTIWVGDLHHWMDESYL++CF+SIGE+
Sbjct: 61  PQYQHHHLPIQHSQPLQGSGGENKTIWVGDLHHWMDESYLHTCFASIGEI 109

[Close]

BLAST of Lsi04G015820 vs. NCBI nr
Match: XP_022936173.1 (polyadenylate-binding protein RBP47C-like [Cucurbita moschata])

HSP 1 Score: 200.3 bits (508), Expect = 1.0e-47
Identity = 97/110 (88.18%), Postives = 102/110 (92.73%), Query Frame = 0


Query: 1   MQSNGSDSQPQEPNQRHQQPQQPWIPMQYPPPTMVMPHHMMTPQHYMAPPL-PPPYMHYH 60
           MQSNGSDSQPQEPNQRHQQPQ  W+ MQYPPP MVMPHHMMTP HYMAPPL PPPYMHYH
Sbjct: 1   MQSNGSDSQPQEPNQRHQQPQS-WMSMQYPPPAMVMPHHMMTPPHYMAPPLPPPPYMHYH 60

Query: 61  HQYQHHHLPIQHSQPLPGSGGENKTIWVGDLHHWMDESYLNSCFSSIGEV 110
            QYQHHHLPIQHSQPL GSGGENKTIWVGDLHHWMDESYL++CF+SIGE+
Sbjct: 61  PQYQHHHLPIQHSQPLQGSGGENKTIWVGDLHHWMDESYLHNCFASIGEI 109

[Close]

BLAST of Lsi04G015820 vs. TAIR 10
Match: AT1G47490.2 (RNA-binding protein 47C )

HSP 1 Score: 76.3 bits (186), Expect = 2.0e-14
Identity = 49/97 (50.52%), Postives = 58/97 (59.79%), Query Frame = 0


Query: 11  QEPNQRHQQPQQPWIPMQYPPPTMVMPHHMMTPQHYMAPPLPPPYMHYHHQYQHHHLPIQ 70
           +E NQ    P  P   M+Y PPT+++PH MM    Y  PP PP    YH    HHHL  Q
Sbjct: 36  EEENQPKTSPTPPPHWMRY-PPTVIIPHQMM----YAPPPFPP----YHQYPNHHHLHHQ 95

Query: 71  H--SQPLPGSGGENKTIWVGDLHHWMDESYLNSCFSS 106
              ++      GENKTIWVGDLHHWMDE+YLNS F+S
Sbjct: 96  SRGNKHQNAFNGENKTIWVGDLHHWMDEAYLNSSFAS 123

[Close]

BLAST of Lsi04G015820 vs. TAIR 10
Match: AT1G47490.1 (RNA-binding protein 47C )

HSP 1 Score: 76.3 bits (186), Expect = 2.0e-14
Identity = 49/97 (50.52%), Postives = 58/97 (59.79%), Query Frame = 0


Query: 11  QEPNQRHQQPQQPWIPMQYPPPTMVMPHHMMTPQHYMAPPLPPPYMHYHHQYQHHHLPIQ 70
           +E NQ    P  P   M+Y PPT+++PH MM    Y  PP PP    YH    HHHL  Q
Sbjct: 36  EEENQPKTSPTPPPHWMRY-PPTVIIPHQMM----YAPPPFPP----YHQYPNHHHLHHQ 95

Query: 71  H--SQPLPGSGGENKTIWVGDLHHWMDESYLNSCFSS 106
              ++      GENKTIWVGDLHHWMDE+YLNS F+S
Sbjct: 96  SRGNKHQNAFNGENKTIWVGDLHHWMDEAYLNSSFAS 123

[Close]

BLAST of Lsi04G015820 vs. TAIR 10
Match: AT3G19130.1 (RNA-binding protein 47B )

HSP 1 Score: 70.1 bits (170), Expect = 1.5e-12
Identity = 51/110 (46.36%), Postives = 60/110 (54.55%), Query Frame = 0


Query: 10  PQEPNQRHQQPQQPWIPMQYPPPT---MVMPHHMMTPQHYMAPPLPPPYMHYH---HQY- 69
           PQ+  Q+ QQ QQ    MQYPP     M+    M+   H   P    PY  +H   HQY 
Sbjct: 27  PQQWQQQQQQQQQWMAAMQYPPAAAMMMMQQQQMLMYPHQYVPYNQGPYQQHHPQLHQYG 86

Query: 70  ---QHHHLPIQHSQPLPGSGGENKTIWVGDLHHWMDESYLNSCFSSIGEV 110
              QH H   QH     GSG + KT+WVGDL HWMDE+YL+SCFS  GEV
Sbjct: 87  SYQQHQHQ--QHKAIDRGSGDDVKTLWVGDLLHWMDETYLHSCFSHTGEV 134

[Close]

BLAST of Lsi04G015820 vs. TAIR 10
Match: AT1G47500.1 (RNA-binding protein 47C' )

HSP 1 Score: 63.9 bits (154), Expect = 1.0e-10
Identity = 45/102 (44.12%), Postives = 54/102 (52.94%), Query Frame = 0


Query: 12  EPNQRHQQPQQP---WIPMQYPPPTMVMPHHMMTPQHYMAPPLPPPYMHYHHQYQHHHLP 71
           E NQ    P  P   W  M+YPP        ++ PQ   APP P P+  YH    HHH  
Sbjct: 37  EENQPKTSPTPPPPHW--MRYPP--------VLMPQMMYAPPPPMPFSPYHQYPNHHHFH 96

Query: 72  IQH--SQPLPGSGGENKTIWVGDLHHWMDESYLNSCFSSIGE 109
            Q   ++      GENKTIWVGDL +WMDE+YLNS F+S  E
Sbjct: 97  HQSRGNKHQNAFNGENKTIWVGDLQNWMDEAYLNSAFTSAEE 128

[Close]

BLAST of Lsi04G015820 vs. TAIR 10
Match: AT1G49600.1 (RNA-binding protein 47A )

HSP 1 Score: 63.5 bits (153), Expect = 1.4e-10
Identity = 49/118 (41.53%), Postives = 61/118 (51.69%), Query Frame = 0


Query: 6   SDSQPQEPNQRHQQPQQPWIP--MQYPPPTMVM---------PHHMMTPQHYMAPPLPPP 65
           S   PQ+  Q+  Q QQ W+    QYP   M M         PH    P +  A    P 
Sbjct: 30  STPPPQQQQQQQWQQQQQWMAAMQQYPAAAMAMMQQQQMMMYPHPQYAPYNQAAYQQHPQ 89

Query: 66  YMH--YHHQYQHHHLPIQHSQPLPGSGGEN-KTIWVGDLHHWMDESYLNSCFSSIGEV 110
           + +  Y  Q Q HH   Q  QP  GSGG++ KT+WVGDL HWMDE+YL++CFS   EV
Sbjct: 90  FQYAAYQQQQQQHHQSQQ--QPRGGSGGDDVKTLWVGDLLHWMDETYLHTCFSHTNEV 145

The following BLAST results are available for this feature:

BLAST of Lsi04G015820 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SX79	2.9e-13	50.52	Polyadenylate-binding protein RBP47C OS=Arabidopsis thaliana OX=3702 GN=RBP47C P...	[more]
Q9LEB3	3.2e-12	44.07	Polyadenylate-binding protein RBP47 OS=Nicotiana plumbaginifolia OX=4092 GN=RBP4...	[more]
Q0WW84	2.1e-11	46.36	Polyadenylate-binding protein RBP47B OS=Arabidopsis thaliana OX=3702 GN=RBP47B P...	[more]
Q9SX80	1.5e-09	44.12	Polyadenylate-binding protein RBP47C' OS=Arabidopsis thaliana OX=3702 GN=RBP47C'...	[more]
F4I3B3	1.9e-09	41.53	Polyadenylate-binding protein RBP47A OS=Arabidopsis thaliana OX=3702 GN=RBP47A P...	[more]

BLAST of Lsi04G015820 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BUU0	2.8e-51	90.91	polyadenylate-binding protein RBP47-like OS=Cucumis melo OX=3656 GN=LOC103493523...	[more]
A0A0A0L4T7	3.4e-49	88.18	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G639100 PE=4 SV=1	[more]
A0A6J1ILR0	4.9e-48	88.18	polyadenylate-binding protein RBP47C-like OS=Cucurbita maxima OX=3661 GN=LOC1114...	[more]
A0A6J1FCI8	4.9e-48	88.18	polyadenylate-binding protein RBP47C-like OS=Cucurbita moschata OX=3662 GN=LOC11...	[more]
A0A6J1CHT5	9.2e-47	87.16	polyadenylate-binding protein RBP47-like OS=Momordica charantia OX=3673 GN=LOC11...	[more]

BLAST of Lsi04G015820 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008452518.1	5.7e-51	90.91	PREDICTED: polyadenylate-binding protein RBP47-like [Cucumis melo]	[more]
XP_004141245.1	7.0e-49	88.18	polyadenylate-binding protein RBP47 [Cucumis sativus] >KAE8649857.1 hypothetical...	[more]
KAG6591362.1	1.0e-47	88.18	Polyadenylate-binding protein RBP47C, partial [Cucurbita argyrosperma subsp. sor...	[more]
XP_022976308.1	1.0e-47	88.18	polyadenylate-binding protein RBP47C-like [Cucurbita maxima]	[more]
XP_022936173.1	1.0e-47	88.18	polyadenylate-binding protein RBP47C-like [Cucurbita moschata]	[more]

BLAST of Lsi04G015820 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G47490.2	2.0e-14	50.52	RNA-binding protein 47C	[more]
AT1G47490.1	2.0e-14	50.52	RNA-binding protein 47C	[more]
AT3G19130.1	1.5e-12	46.36	RNA-binding protein 47B	[more]
AT1G47500.1	1.0e-10	44.12	RNA-binding protein 47C'	[more]
AT1G49600.1	1.4e-10	41.53	RNA-binding protein 47A	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..28
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..23
None	No IPR available	PANTHER	PTHR47640:SF16	POLYADENYLATE-BINDING PROTEIN RBP47C-RELATED	coord: 16..110
None	No IPR available	PANTHER	PTHR47640	TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED	coord: 16..110
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 59..125

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi04G015820.1	Lsi04G015820.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005829	cytosol
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003676	nucleic acid binding