Lsi04G015500 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi04G015500
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	BHLH transcription factor
Location	chr04: 23061836 .. 23062519 (+)
RNA-Seq Expression	Lsi04G015500
Synteny	Lsi04G015500

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAAATGATGATCTAAAATCGGAGGATCAGATGGAGATTATGATGATGATGCAACAAATGGAAAAAATCCCTGAATTTTACAATGATTTCTCACCGCCGTCCTCTGATTTCAGCTCAAGCAGCACCGATCACCCACATTGCCACCTGGACTCTTCCTCATCGCCTTCCTTATTCATCAACCAACCCCCTTATAATTTCCCCCAAACTACTGTTCCATTCCCGGCAACCACTTCACGGTGGCGAAACTCCGGTGGTGAAACAGAGAGTTTGCAGAAACAGAGATCAGTAGCGGCGATGAGGGAGATGATATTCCGAATAGCAGTGATGCAACCAATTCACATAGACCCAGAAGCGGTGAAGCCACCAAAAAGAAGGAACGTCAAAATTTCAACTGACCCACAAAGCGTAGCGGCTCGGCATAGGAGAGAAAGAATTAGTGAGAGAATTAGAATACTTCAAAGACTGGTTCCTGGTGGTACTAAAATGGACACTGCTTCCATGTTGGATGAAGCTATTCATTACGTTAAATTCTTAAAGACTCAAGTTCAGTCCCTTGAAAGAGCTGCCGGCGCCGGCGGGAACCGCCCAATCACTGGTGGTGGTGGTGCAGAAGCACCTAGCGTTGGGTTCCCTTTGGAAATGTCAACTGGGAGCTACATCCCGAATCACTCACAACCTTGA

mRNA sequence

ATGGAAAATGATGATCTAAAATCGGAGGATCAGATGGAGATTATGATGATGATGCAACAAATGGAAAAAATCCCTGAATTTTACAATGATTTCTCACCGCCGTCCTCTGATTTCAGCTCAAGCAGCACCGATCACCCACATTGCCACCTGGACTCTTCCTCATCGCCTTCCTTATTCATCAACCAACCCCCTTATAATTTCCCCCAAACTACTGTTCCATTCCCGGCAACCACTTCACGGTGGCGAAACTCCGGTGGTGAAACAGAGAGTTTGCAGAAACAGAGATCAGTAGCGGCGATGAGGGAGATGATATTCCGAATAGCAGTGATGCAACCAATTCACATAGACCCAGAAGCGGTGAAGCCACCAAAAAGAAGGAACGTCAAAATTTCAACTGACCCACAAAGCGTAGCGGCTCGGCATAGGAGAGAAAGAATTAGTGAGAGAATTAGAATACTTCAAAGACTGGTTCCTGGTGGTACTAAAATGGACACTGCTTCCATGTTGGATGAAGCTATTCATTACGTTAAATTCTTAAAGACTCAAGTTCAGTCCCTTGAAAGAGCTGCCGGCGCCGGCGGGAACCGCCCAATCACTGGTGGTGGTGGTGCAGAAGCACCTAGCGTTGGGTTCCCTTTGGAAATGTCAACTGGGAGCTACATCCCGAATCACTCACAACCTTGA

Coding sequence (CDS)

ATGGAAAATGATGATCTAAAATCGGAGGATCAGATGGAGATTATGATGATGATGCAACAAATGGAAAAAATCCCTGAATTTTACAATGATTTCTCACCGCCGTCCTCTGATTTCAGCTCAAGCAGCACCGATCACCCACATTGCCACCTGGACTCTTCCTCATCGCCTTCCTTATTCATCAACCAACCCCCTTATAATTTCCCCCAAACTACTGTTCCATTCCCGGCAACCACTTCACGGTGGCGAAACTCCGGTGGTGAAACAGAGAGTTTGCAGAAACAGAGATCAGTAGCGGCGATGAGGGAGATGATATTCCGAATAGCAGTGATGCAACCAATTCACATAGACCCAGAAGCGGTGAAGCCACCAAAAAGAAGGAACGTCAAAATTTCAACTGACCCACAAAGCGTAGCGGCTCGGCATAGGAGAGAAAGAATTAGTGAGAGAATTAGAATACTTCAAAGACTGGTTCCTGGTGGTACTAAAATGGACACTGCTTCCATGTTGGATGAAGCTATTCATTACGTTAAATTCTTAAAGACTCAAGTTCAGTCCCTTGAAAGAGCTGCCGGCGCCGGCGGGAACCGCCCAATCACTGGTGGTGGTGGTGCAGAAGCACCTAGCGTTGGGTTCCCTTTGGAAATGTCAACTGGGAGCTACATCCCGAATCACTCACAACCTTGA

Protein sequence

MENDDLKSEDQMEIMMMMQQMEKIPEFYNDFSPPSSDFSSSSTDHPHCHLDSSSSPSLFINQPPYNFPQTTVPFPATTSRWRNSGGETESLQKQRSVAAMREMIFRIAVMQPIHIDPEAVKPPKRRNVKISTDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKTQVQSLERAAGAGGNRPITGGGGAEAPSVGFPLEMSTGSYIPNHSQP

Homology

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BLAST of Lsi04G015500 vs. ExPASy Swiss-Prot
Match: Q9FHA7 (Transcription factor HEC1 OS=Arabidopsis thaliana OX=3702 GN=HEC1 PE=1 SV=1)

HSP 1 Score: 196.4 bits (498), Expect = 3.4e-49
Identity = 123/211 (58.29%), Postives = 143/211 (67.77%), Query Frame = 0


Query: 16  MMMQQMEKIPEFYNDFSPPSSDFSSSSTDHPHCHLDSSS---SPSLFINQPPYNF----- 75
           MMM QMEK+PEF N    P+S F S   ++ +  L +S+   S     N+P + +     
Sbjct: 8   MMMHQMEKLPEFCN----PNSSFFSPDHNNTYPFLFNSTHYQSDHSMTNEPGFRYGSGLL 67

Query: 76  --PQTTVPFPATTSRWRNSGGETESLQKQRSVAAMREMIFRIAVMQPIHIDPEAVKPPKR 135
             P +  P  A +S + +    + +     ++AAMREMIFRIAVMQPIHIDPEAVKPPKR
Sbjct: 68  TNPSSISPNTAYSSVFLDKRNNSNNNNNGTNMAAMREMIFRIAVMQPIHIDPEAVKPPKR 127

Query: 136 RNVKISTDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKTQVQS 195
           RNV+IS DPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLK QVQS
Sbjct: 128 RNVRISKDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKKQVQS 187

Query: 196 LERAA------GAGGNRPITGGGGAEAPSVG 211
           LE  A      G GG R + GGGG  A S G
Sbjct: 188 LEEQAVVTGGGGGGGGRVLIGGGGMTAASGG 214

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BLAST of Lsi04G015500 vs. ExPASy Swiss-Prot
Match: Q9SND4 (Transcription factor HEC2 OS=Arabidopsis thaliana OX=3702 GN=HEC2 PE=1 SV=1)

HSP 1 Score: 186.4 bits (472), Expect = 3.5e-46
Identity = 119/218 (54.59%), Postives = 143/218 (65.60%), Query Frame = 0


Query: 1   MENDDLKSEDQMEIMMMMQQMEKIPEFYNDFSPPSSDFSSSSTDHPHCHLDSSSSPSLFI 60
           M+N D+       + MMMQQMEK+PE +++ +P       +   H    L  S++   F 
Sbjct: 1   MDNSDIL------MNMMMQQMEKLPEHFSNSNP-------NPNPHNIMMLSESNTHPFFF 60

Query: 61  NQPPYNFP-QTTVPFPATTSRWRNSGGETESLQKQR-------SVAAMREMIFRIAVMQP 120
           N    + P   T+P       +R +   + SL ++R       ++AAMREMIFRIAVMQP
Sbjct: 61  NPTHSHLPFDQTMPHHQPGLNFRYAPSPSSSLPEKRGGCSDNANMAAMREMIFRIAVMQP 120

Query: 121 IHIDPEAVKPPKRRNVKISTDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEA 180
           IHIDPE+VKPPKR+NV+IS DPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEA
Sbjct: 121 IHIDPESVKPPKRKNVRISKDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEA 180

Query: 181 IHYVKFLKTQVQSLERAAGAGGNRPITGGGGAEAPSVG 211
           IHYVKFLK QVQSLE  A   G       GGA A +VG
Sbjct: 181 IHYVKFLKKQVQSLEEHAVVNGGGMTAVAGGALAGTVG 205

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BLAST of Lsi04G015500 vs. ExPASy Swiss-Prot
Match: Q9LXD8 (Transcription factor HEC3 OS=Arabidopsis thaliana OX=3702 GN=HEC3 PE=1 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 1.3e-32
Identity = 83/165 (50.30%), Postives = 105/165 (63.64%), Query Frame = 0


Query: 35  SSDFSSSSTDHPHCH--------LDSSSSPSLFINQPPYNFPQTTVPFPATTSRWRNSGG 94
           SS+ ++ + DH H H        +D  +   +F      +FP  +     TT    +   
Sbjct: 22  SSNNNNKNDDHHHQHNNDPIGMAMDQYTQLHIFNPFSSSHFPPLSSSLTTTTLLSGDQED 81

Query: 95  ETESLQKQRSVAAMREMIFRIAVMQPIHIDPEAVKPPKRRNVKISTDPQSVAARHRRERI 154
           + +  +    + AM+EM+++IA MQ + IDP  VK PKRRNV+IS DPQSVAARHRRERI
Sbjct: 82  DEDEEEPLEELGAMKEMMYKIAAMQSVDIDPATVKKPKRRNVRISDDPQSVAARHRRERI 141

Query: 155 SERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKTQVQSLERAAG 192
           SERIRILQRLVPGGTKMDTASMLDEAI YVKFLK Q++ L    G
Sbjct: 142 SERIRILQRLVPGGTKMDTASMLDEAIRYVKFLKRQIRLLNNNTG 186

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BLAST of Lsi04G015500 vs. ExPASy Swiss-Prot
Match: Q8S3D2 (Transcription factor bHLH87 OS=Arabidopsis thaliana OX=3702 GN=BHLH87 PE=1 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 2.5e-28
Identity = 62/92 (67.39%), Postives = 79/92 (85.87%), Query Frame = 0


Query: 96  SVAAMREMIFRIAVMQPIHIDPEAVKPPKRRNVKISTDPQSVAARHRRERISERIRILQR 155
           ++A M+EMI+R A  +P++   E V+ PKR+NVKISTDPQ+VAAR RRERISE+IR+LQ 
Sbjct: 241 AIAQMKEMIYRAAAFRPVNFGLEIVEKPKRKNVKISTDPQTVAARQRRERISEKIRVLQT 300

Query: 156 LVPGGTKMDTASMLDEAIHYVKFLKTQVQSLE 188
           LVPGGTKMDTASMLDEA +Y+KFL+ QV++LE
Sbjct: 301 LVPGGTKMDTASMLDEAANYLKFLRAQVKALE 332

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BLAST of Lsi04G015500 vs. ExPASy Swiss-Prot
Match: O81313 (Transcription factor IND OS=Arabidopsis thaliana OX=3702 GN=IND PE=1 SV=3)

HSP 1 Score: 124.8 bits (312), Expect = 1.3e-27
Identity = 64/99 (64.65%), Postives = 76/99 (76.77%), Query Frame = 0


Query: 89  ESLQKQRSVAAMREMIFRIAVMQPIHIDPEAVKPPKRRNVKISTDPQSVAARHRRERISE 148
           E  +    + AM+EM + IAVMQP+ IDP  V  P RRNV+IS DPQ+V AR RRERISE
Sbjct: 77  EDEEYDEDMDAMKEMQYMIAVMQPVDIDPATVPKPNRRNVRISDDPQTVVARRRRERISE 136

Query: 149 RIRILQRLVPGGTKMDTASMLDEAIHYVKFLKTQVQSLE 188
           +IRIL+R+VPGG KMDTASMLDEAI Y KFLK QV+ L+
Sbjct: 137 KIRILKRIVPGGAKMDTASMLDEAIRYTKFLKRQVRILQ 175

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BLAST of Lsi04G015500 vs. ExPASy TrEMBL
Match: A0A1S3BU58 (transcription factor HEC2-like OS=Cucumis melo OX=3656 GN=LOC103493551 PE=4 SV=1)

HSP 1 Score: 382.9 bits (982), Expect = 9.5e-103
Identity = 211/237 (89.03%), Postives = 218/237 (91.98%), Query Frame = 0


Query: 1   MENDDLKSEDQMEIMMMMQQMEKIPEFYNDFSPPSSDFSSSSTDHPHCHLDSSSSPSLFI 60
           MENDDLKSEDQMEIMMMMQQMEKIPEFYNDFSPPSSDFSS++TD+PHCHLDSSSSP LFI
Sbjct: 1   MENDDLKSEDQMEIMMMMQQMEKIPEFYNDFSPPSSDFSSTTTDNPHCHLDSSSSPPLFI 60

Query: 61  ------NQPPYNFP-QTTVPFPATT-SRWRNSGG-ETESLQKQRSVAAMREMIFRIAVMQ 120
                 N PPYNFP Q+TVPFP T+ SRWRNSG  ETESLQKQRSVAAMREMIFRIAVMQ
Sbjct: 61  NNNNSNNNPPYNFPQQSTVPFPGTSPSRWRNSGSCETESLQKQRSVAAMREMIFRIAVMQ 120

Query: 121 PIHIDPEAVKPPKRRNVKISTDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDE 180
           PIHIDPEAVKPPKRRNVKISTDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDE
Sbjct: 121 PIHIDPEAVKPPKRRNVKISTDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDE 180

Query: 181 AIHYVKFLKTQVQSLERAAGAGGNRPITGGGGAEAPSVGFPLEMSTGSYIPNH-SQP 228
           AIHYVKFLKTQVQSLERAA + GNRPITGGG   APSVGFPLEMS+GSYIPNH SQP
Sbjct: 181 AIHYVKFLKTQVQSLERAAVSTGNRPITGGG---APSVGFPLEMSSGSYIPNHQSQP 234

[Close]

BLAST of Lsi04G015500 vs. ExPASy TrEMBL
Match: A0A0A0L0B3 (BHLH domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G639900 PE=4 SV=1)

HSP 1 Score: 379.4 bits (973), Expect = 1.0e-101
Identity = 208/237 (87.76%), Postives = 213/237 (89.87%), Query Frame = 0


Query: 1   MENDDLKSEDQMEIMMMMQQMEKIPEFYNDFSPPSSDFSSSSTDHPHCHLDSSSSPSLFI 60
           MENDDLKSEDQMEIMMMMQQMEKIPEFYNDFSPPSSDFSS++TDHPHCHLDSSSSP LFI
Sbjct: 1   MENDDLKSEDQMEIMMMMQQMEKIPEFYNDFSPPSSDFSSTTTDHPHCHLDSSSSPPLFI 60

Query: 61  --------NQPPYNFP-QTTVPFPAT-TSRWRNSGG-ETESLQKQRSVAAMREMIFRIAV 120
                   N PPYNFP Q+TVPFP T +SRWRNSG  ETESLQKQRSVAAMREMIFRIAV
Sbjct: 61  NNNSNNNSNNPPYNFPQQSTVPFPGTSSSRWRNSGSCETESLQKQRSVAAMREMIFRIAV 120

Query: 121 MQPIHIDPEAVKPPKRRNVKISTDPQSVAARHRRERISERIRILQRLVPGGTKMDTASML 180
           MQPIHIDPEAVKPPKRRNVKISTDPQSVAARHRRERISERIRILQRLVPGGTKMDTASML
Sbjct: 121 MQPIHIDPEAVKPPKRRNVKISTDPQSVAARHRRERISERIRILQRLVPGGTKMDTASML 180

Query: 181 DEAIHYVKFLKTQVQSLERAAGAGGNRPITGGGGAEAPSVGFPLEMSTGSYIPNHSQ 227
           DEAIHYVKFLKTQVQSLERAA + GNRPITG G     SVGFPLEMSTGSYIPNH Q
Sbjct: 181 DEAIHYVKFLKTQVQSLERAAVSAGNRPITGVGAPS--SVGFPLEMSTGSYIPNHHQ 235

[Close]

BLAST of Lsi04G015500 vs. ExPASy TrEMBL
Match: A0A5A7V7R5 (Transcription factor HEC2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold134G003280 PE=4 SV=1)

HSP 1 Score: 363.2 bits (931), Expect = 7.8e-97
Identity = 200/226 (88.50%), Postives = 207/226 (91.59%), Query Frame = 0


Query: 12  MEIMMMMQQMEKIPEFYNDFSPPSSDFSSSSTDHPHCHLDSSSSPSLFI------NQPPY 71
           MEIMMMMQQMEKIPEFYNDFSPPSSDFSS++TD+PHCHLDSSSSP LFI      N PPY
Sbjct: 1   MEIMMMMQQMEKIPEFYNDFSPPSSDFSSTTTDNPHCHLDSSSSPPLFINNNNSNNNPPY 60

Query: 72  NFP-QTTVPFPATT-SRWRNSGG-ETESLQKQRSVAAMREMIFRIAVMQPIHIDPEAVKP 131
           NFP Q+TVPFP T+ SRWRNSG  ETESLQKQRSVAAMREMIFRIAVMQPIHIDPEAVKP
Sbjct: 61  NFPQQSTVPFPGTSPSRWRNSGSCETESLQKQRSVAAMREMIFRIAVMQPIHIDPEAVKP 120

Query: 132 PKRRNVKISTDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKTQ 191
           PKRRNVKISTDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKTQ
Sbjct: 121 PKRRNVKISTDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKTQ 180

Query: 192 VQSLERAAGAGGNRPITGGGGAEAPSVGFPLEMSTGSYIPNH-SQP 228
           VQSLERAA + GNRPITGGG   APSVGFPLEMS+GSYIPNH SQP
Sbjct: 181 VQSLERAAVSTGNRPITGGG---APSVGFPLEMSSGSYIPNHQSQP 223

[Close]

BLAST of Lsi04G015500 vs. ExPASy TrEMBL
Match: A0A6J1FE54 (transcription factor HEC2-like OS=Cucurbita moschata OX=3662 GN=LOC111443152 PE=4 SV=1)

HSP 1 Score: 318.2 bits (814), Expect = 2.9e-83
Identity = 186/231 (80.52%), Postives = 192/231 (83.12%), Query Frame = 0


Query: 1   MENDDLKSEDQMEIMMMMQQMEKIPEFYNDFSPPSSDFSSSSTDHPHC-----HLDSSSS 60
           MENDDLKSEDQMEIMMMMQQMEKIPEFYN  SPPS  FSSS+TD PHC         SSS
Sbjct: 1   MENDDLKSEDQMEIMMMMQQMEKIPEFYNHLSPPSDHFSSSTTD-PHCLETLQQAAESSS 60

Query: 61  PSLFINQPPYNFPQTTVPFPATTSRWRNSGGETESLQKQRSVAAMREMIFRIAVMQPIHI 120
           P  F N  PYN PQ TVPFP T+SRWRNSGGET+ LQKQRSVAAMREMIFRIAVMQPI I
Sbjct: 61  PP-FTNNLPYNLPQ-TVPFP-TSSRWRNSGGETD-LQKQRSVAAMREMIFRIAVMQPIQI 120

Query: 121 DPEAVKPPKRRNVKISTDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHY 180
           DPEAVKPPKRRNVKISTDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHY
Sbjct: 121 DPEAVKPPKRRNVKISTDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHY 180

Query: 181 VKFLKTQVQSLERAAGAGGNRPI----TGGGGAEAPSVGFPLEMSTGSYIP 223
           VKFLKTQVQSLERAA    NRP+         A AP VGFPLEMS+GSY+P
Sbjct: 181 VKFLKTQVQSLERAA---TNRPLPDAAAAAAAAAAPGVGFPLEMSSGSYVP 223

[Close]

BLAST of Lsi04G015500 vs. ExPASy TrEMBL
Match: A0A6J1IKS0 (transcription factor HEC2-like OS=Cucurbita maxima OX=3661 GN=LOC111476512 PE=4 SV=1)

HSP 1 Score: 316.2 bits (809), Expect = 1.1e-82
Identity = 185/227 (81.50%), Postives = 191/227 (84.14%), Query Frame = 0


Query: 1   MENDDLKSEDQMEIMMMMQQMEKIPEFYNDFSPPSSDFSSSSTDHPHC-----HLDSSSS 60
           MENDDLKSEDQMEIMMMMQQMEKIPEFYN  SPPS  FSSS+TD PHC         SSS
Sbjct: 1   MENDDLKSEDQMEIMMMMQQMEKIPEFYNHLSPPSDHFSSSTTD-PHCLETLQQAAESSS 60

Query: 61  PSLFINQPPYNFPQTTVPFPATTSRWRNSGGETESLQKQRSVAAMREMIFRIAVMQPIHI 120
           P  F N  PYN PQ TVPFP T+SRWRNSGGET+ LQKQRSVAAMREMIFRIAVMQPI I
Sbjct: 61  PP-FTNNLPYNLPQ-TVPFP-TSSRWRNSGGETD-LQKQRSVAAMREMIFRIAVMQPIQI 120

Query: 121 DPEAVKPPKRRNVKISTDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHY 180
           DPEAVKPPKRRNVKISTDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHY
Sbjct: 121 DPEAVKPPKRRNVKISTDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHY 180

Query: 181 VKFLKTQVQSLERAAGAGGNRPITGGGGAEAPSVGFPLEMSTGSYIP 223
           VKFLKTQVQSLERAA    NRP+     A A  VGFPLEMS+GSY+P
Sbjct: 181 VKFLKTQVQSLERAA---TNRPLP-DAAAPASGVGFPLEMSSGSYVP 218

[Close]

BLAST of Lsi04G015500 vs. NCBI nr
Match: XP_038899834.1 (transcription factor HEC2-like [Benincasa hispida])

HSP 1 Score: 404.4 bits (1038), Expect = 6.3e-109
Identity = 217/232 (93.53%), Postives = 220/232 (94.83%), Query Frame = 0


Query: 1   MENDDLKSEDQMEIMMMMQQMEKIPEFYNDFSPPSSDFSSSSTDHPHCHLDSSSS-PSLF 60
           MENDDLKSEDQMEIMMMMQQMEKIPEFYNDFSPPSSDFSSS+TDHPHCHLDSSSS P LF
Sbjct: 17  MENDDLKSEDQMEIMMMMQQMEKIPEFYNDFSPPSSDFSSSTTDHPHCHLDSSSSPPPLF 76

Query: 61  INQPPYNFP-QTTVPFPATTSRWRNSGGETESLQKQRSVAAMREMIFRIAVMQPIHIDPE 120
           IN PPYNFP Q+TVPFPATTSRWRNSGGETESL+KQRSVAAMREMIFRIAVMQPIHIDPE
Sbjct: 77  INNPPYNFPQQSTVPFPATTSRWRNSGGETESLRKQRSVAAMREMIFRIAVMQPIHIDPE 136

Query: 121 AVKPPKRRNVKISTDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKF 180
           AVKPPKRRNVKISTDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKF
Sbjct: 137 AVKPPKRRNVKISTDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKF 196

Query: 181 LKTQVQSLERAAGAG---GNRPITGGGGAEAPSVGFPLEMSTGSYIPNHSQP 228
           LKTQVQSLERAA AG   GNRPIT GG A APSVGFPLE STGSYIPNHSQP
Sbjct: 197 LKTQVQSLERAAAAGAGAGNRPIT-GGAAIAPSVGFPLETSTGSYIPNHSQP 247

[Close]

BLAST of Lsi04G015500 vs. NCBI nr
Match: XP_008452566.1 (PREDICTED: transcription factor HEC2-like [Cucumis melo])

HSP 1 Score: 382.9 bits (982), Expect = 2.0e-102
Identity = 211/237 (89.03%), Postives = 218/237 (91.98%), Query Frame = 0


Query: 1   MENDDLKSEDQMEIMMMMQQMEKIPEFYNDFSPPSSDFSSSSTDHPHCHLDSSSSPSLFI 60
           MENDDLKSEDQMEIMMMMQQMEKIPEFYNDFSPPSSDFSS++TD+PHCHLDSSSSP LFI
Sbjct: 1   MENDDLKSEDQMEIMMMMQQMEKIPEFYNDFSPPSSDFSSTTTDNPHCHLDSSSSPPLFI 60

Query: 61  ------NQPPYNFP-QTTVPFPATT-SRWRNSGG-ETESLQKQRSVAAMREMIFRIAVMQ 120
                 N PPYNFP Q+TVPFP T+ SRWRNSG  ETESLQKQRSVAAMREMIFRIAVMQ
Sbjct: 61  NNNNSNNNPPYNFPQQSTVPFPGTSPSRWRNSGSCETESLQKQRSVAAMREMIFRIAVMQ 120

Query: 121 PIHIDPEAVKPPKRRNVKISTDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDE 180
           PIHIDPEAVKPPKRRNVKISTDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDE
Sbjct: 121 PIHIDPEAVKPPKRRNVKISTDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDE 180

Query: 181 AIHYVKFLKTQVQSLERAAGAGGNRPITGGGGAEAPSVGFPLEMSTGSYIPNH-SQP 228
           AIHYVKFLKTQVQSLERAA + GNRPITGGG   APSVGFPLEMS+GSYIPNH SQP
Sbjct: 181 AIHYVKFLKTQVQSLERAAVSTGNRPITGGG---APSVGFPLEMSSGSYIPNHQSQP 234

[Close]

BLAST of Lsi04G015500 vs. NCBI nr
Match: XP_004141382.1 (transcription factor HEC2 [Cucumis sativus] >KGN55203.1 hypothetical protein Csa_012883 [Cucumis sativus])

HSP 1 Score: 379.4 bits (973), Expect = 2.2e-101
Identity = 208/237 (87.76%), Postives = 213/237 (89.87%), Query Frame = 0


Query: 1   MENDDLKSEDQMEIMMMMQQMEKIPEFYNDFSPPSSDFSSSSTDHPHCHLDSSSSPSLFI 60
           MENDDLKSEDQMEIMMMMQQMEKIPEFYNDFSPPSSDFSS++TDHPHCHLDSSSSP LFI
Sbjct: 1   MENDDLKSEDQMEIMMMMQQMEKIPEFYNDFSPPSSDFSSTTTDHPHCHLDSSSSPPLFI 60

Query: 61  --------NQPPYNFP-QTTVPFPAT-TSRWRNSGG-ETESLQKQRSVAAMREMIFRIAV 120
                   N PPYNFP Q+TVPFP T +SRWRNSG  ETESLQKQRSVAAMREMIFRIAV
Sbjct: 61  NNNSNNNSNNPPYNFPQQSTVPFPGTSSSRWRNSGSCETESLQKQRSVAAMREMIFRIAV 120

Query: 121 MQPIHIDPEAVKPPKRRNVKISTDPQSVAARHRRERISERIRILQRLVPGGTKMDTASML 180
           MQPIHIDPEAVKPPKRRNVKISTDPQSVAARHRRERISERIRILQRLVPGGTKMDTASML
Sbjct: 121 MQPIHIDPEAVKPPKRRNVKISTDPQSVAARHRRERISERIRILQRLVPGGTKMDTASML 180

Query: 181 DEAIHYVKFLKTQVQSLERAAGAGGNRPITGGGGAEAPSVGFPLEMSTGSYIPNHSQ 227
           DEAIHYVKFLKTQVQSLERAA + GNRPITG G     SVGFPLEMSTGSYIPNH Q
Sbjct: 181 DEAIHYVKFLKTQVQSLERAAVSAGNRPITGVGAPS--SVGFPLEMSTGSYIPNHHQ 235

[Close]

BLAST of Lsi04G015500 vs. NCBI nr
Match: KAA0064392.1 (transcription factor HEC2-like [Cucumis melo var. makuwa] >TYK20194.1 transcription factor HEC2-like [Cucumis melo var. makuwa])

HSP 1 Score: 363.2 bits (931), Expect = 1.6e-96
Identity = 200/226 (88.50%), Postives = 207/226 (91.59%), Query Frame = 0


Query: 12  MEIMMMMQQMEKIPEFYNDFSPPSSDFSSSSTDHPHCHLDSSSSPSLFI------NQPPY 71
           MEIMMMMQQMEKIPEFYNDFSPPSSDFSS++TD+PHCHLDSSSSP LFI      N PPY
Sbjct: 1   MEIMMMMQQMEKIPEFYNDFSPPSSDFSSTTTDNPHCHLDSSSSPPLFINNNNSNNNPPY 60

Query: 72  NFP-QTTVPFPATT-SRWRNSGG-ETESLQKQRSVAAMREMIFRIAVMQPIHIDPEAVKP 131
           NFP Q+TVPFP T+ SRWRNSG  ETESLQKQRSVAAMREMIFRIAVMQPIHIDPEAVKP
Sbjct: 61  NFPQQSTVPFPGTSPSRWRNSGSCETESLQKQRSVAAMREMIFRIAVMQPIHIDPEAVKP 120

Query: 132 PKRRNVKISTDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKTQ 191
           PKRRNVKISTDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKTQ
Sbjct: 121 PKRRNVKISTDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKTQ 180

Query: 192 VQSLERAAGAGGNRPITGGGGAEAPSVGFPLEMSTGSYIPNH-SQP 228
           VQSLERAA + GNRPITGGG   APSVGFPLEMS+GSYIPNH SQP
Sbjct: 181 VQSLERAAVSTGNRPITGGG---APSVGFPLEMSSGSYIPNHQSQP 223

[Close]

BLAST of Lsi04G015500 vs. NCBI nr
Match: XP_023536625.1 (transcription factor HEC2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 320.1 bits (819), Expect = 1.6e-83
Identity = 185/227 (81.50%), Postives = 191/227 (84.14%), Query Frame = 0


Query: 1   MENDDLKSEDQMEIMMMMQQMEKIPEFYNDFSPPSSDFSSSSTDHPHC-----HLDSSSS 60
           MENDDLKSEDQMEIMMMMQQMEKIPEFYN  SPPS  FSSS+TD PHC         SSS
Sbjct: 1   MENDDLKSEDQMEIMMMMQQMEKIPEFYNHLSPPSDHFSSSTTD-PHCLETLQQAAESSS 60

Query: 61  PSLFINQPPYNFPQTTVPFPATTSRWRNSGGETESLQKQRSVAAMREMIFRIAVMQPIHI 120
           P  F N  PYN PQ TVPFP T+SRWRNSGGET+ LQKQRSVAAMREMIFRIAVMQPI I
Sbjct: 61  PP-FTNNLPYNLPQ-TVPFP-TSSRWRNSGGETD-LQKQRSVAAMREMIFRIAVMQPIQI 120

Query: 121 DPEAVKPPKRRNVKISTDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHY 180
           DPEAVKPPKRRNVKISTDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHY
Sbjct: 121 DPEAVKPPKRRNVKISTDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHY 180

Query: 181 VKFLKTQVQSLERAAGAGGNRPITGGGGAEAPSVGFPLEMSTGSYIP 223
           VKFLKTQVQSLERAA    NRP+     A A  VGFPLEMS+GSY+P
Sbjct: 181 VKFLKTQVQSLERAA---TNRPLPDAAAAAASGVGFPLEMSSGSYVP 219

[Close]

BLAST of Lsi04G015500 vs. TAIR 10
Match: AT5G67060.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 196.4 bits (498), Expect = 2.4e-50
Identity = 123/211 (58.29%), Postives = 143/211 (67.77%), Query Frame = 0


Query: 16  MMMQQMEKIPEFYNDFSPPSSDFSSSSTDHPHCHLDSSS---SPSLFINQPPYNF----- 75
           MMM QMEK+PEF N    P+S F S   ++ +  L +S+   S     N+P + +     
Sbjct: 8   MMMHQMEKLPEFCN----PNSSFFSPDHNNTYPFLFNSTHYQSDHSMTNEPGFRYGSGLL 67

Query: 76  --PQTTVPFPATTSRWRNSGGETESLQKQRSVAAMREMIFRIAVMQPIHIDPEAVKPPKR 135
             P +  P  A +S + +    + +     ++AAMREMIFRIAVMQPIHIDPEAVKPPKR
Sbjct: 68  TNPSSISPNTAYSSVFLDKRNNSNNNNNGTNMAAMREMIFRIAVMQPIHIDPEAVKPPKR 127

Query: 136 RNVKISTDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKTQVQS 195
           RNV+IS DPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLK QVQS
Sbjct: 128 RNVRISKDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKKQVQS 187

Query: 196 LERAA------GAGGNRPITGGGGAEAPSVG 211
           LE  A      G GG R + GGGG  A S G
Sbjct: 188 LEEQAVVTGGGGGGGGRVLIGGGGMTAASGG 214

[Close]

BLAST of Lsi04G015500 vs. TAIR 10
Match: AT3G50330.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 186.4 bits (472), Expect = 2.5e-47
Identity = 119/218 (54.59%), Postives = 143/218 (65.60%), Query Frame = 0


Query: 1   MENDDLKSEDQMEIMMMMQQMEKIPEFYNDFSPPSSDFSSSSTDHPHCHLDSSSSPSLFI 60
           M+N D+       + MMMQQMEK+PE +++ +P       +   H    L  S++   F 
Sbjct: 1   MDNSDIL------MNMMMQQMEKLPEHFSNSNP-------NPNPHNIMMLSESNTHPFFF 60

Query: 61  NQPPYNFP-QTTVPFPATTSRWRNSGGETESLQKQR-------SVAAMREMIFRIAVMQP 120
           N    + P   T+P       +R +   + SL ++R       ++AAMREMIFRIAVMQP
Sbjct: 61  NPTHSHLPFDQTMPHHQPGLNFRYAPSPSSSLPEKRGGCSDNANMAAMREMIFRIAVMQP 120

Query: 121 IHIDPEAVKPPKRRNVKISTDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEA 180
           IHIDPE+VKPPKR+NV+IS DPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEA
Sbjct: 121 IHIDPESVKPPKRKNVRISKDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEA 180

Query: 181 IHYVKFLKTQVQSLERAAGAGGNRPITGGGGAEAPSVG 211
           IHYVKFLK QVQSLE  A   G       GGA A +VG
Sbjct: 181 IHYVKFLKKQVQSLEEHAVVNGGGMTAVAGGALAGTVG 205

[Close]

BLAST of Lsi04G015500 vs. TAIR 10
Match: AT5G09750.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 141.4 bits (355), Expect = 9.2e-34
Identity = 83/165 (50.30%), Postives = 105/165 (63.64%), Query Frame = 0


Query: 35  SSDFSSSSTDHPHCH--------LDSSSSPSLFINQPPYNFPQTTVPFPATTSRWRNSGG 94
           SS+ ++ + DH H H        +D  +   +F      +FP  +     TT    +   
Sbjct: 22  SSNNNNKNDDHHHQHNNDPIGMAMDQYTQLHIFNPFSSSHFPPLSSSLTTTTLLSGDQED 81

Query: 95  ETESLQKQRSVAAMREMIFRIAVMQPIHIDPEAVKPPKRRNVKISTDPQSVAARHRRERI 154
           + +  +    + AM+EM+++IA MQ + IDP  VK PKRRNV+IS DPQSVAARHRRERI
Sbjct: 82  DEDEEEPLEELGAMKEMMYKIAAMQSVDIDPATVKKPKRRNVRISDDPQSVAARHRRERI 141

Query: 155 SERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKTQVQSLERAAG 192
           SERIRILQRLVPGGTKMDTASMLDEAI YVKFLK Q++ L    G
Sbjct: 142 SERIRILQRLVPGGTKMDTASMLDEAIRYVKFLKRQIRLLNNNTG 186

[Close]

BLAST of Lsi04G015500 vs. TAIR 10
Match: AT3G21330.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 127.1 bits (318), Expect = 1.8e-29
Identity = 62/92 (67.39%), Postives = 79/92 (85.87%), Query Frame = 0


Query: 96  SVAAMREMIFRIAVMQPIHIDPEAVKPPKRRNVKISTDPQSVAARHRRERISERIRILQR 155
           ++A M+EMI+R A  +P++   E V+ PKR+NVKISTDPQ+VAAR RRERISE+IR+LQ 
Sbjct: 241 AIAQMKEMIYRAAAFRPVNFGLEIVEKPKRKNVKISTDPQTVAARQRRERISEKIRVLQT 300

Query: 156 LVPGGTKMDTASMLDEAIHYVKFLKTQVQSLE 188
           LVPGGTKMDTASMLDEA +Y+KFL+ QV++LE
Sbjct: 301 LVPGGTKMDTASMLDEAANYLKFLRAQVKALE 332

[Close]

BLAST of Lsi04G015500 vs. TAIR 10
Match: AT4G00120.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 124.8 bits (312), Expect = 8.9e-29
Identity = 64/99 (64.65%), Postives = 76/99 (76.77%), Query Frame = 0


Query: 89  ESLQKQRSVAAMREMIFRIAVMQPIHIDPEAVKPPKRRNVKISTDPQSVAARHRRERISE 148
           E  +    + AM+EM + IAVMQP+ IDP  V  P RRNV+IS DPQ+V AR RRERISE
Sbjct: 77  EDEEYDEDMDAMKEMQYMIAVMQPVDIDPATVPKPNRRNVRISDDPQTVVARRRRERISE 136

Query: 149 RIRILQRLVPGGTKMDTASMLDEAIHYVKFLKTQVQSLE 188
           +IRIL+R+VPGG KMDTASMLDEAI Y KFLK QV+ L+
Sbjct: 137 KIRILKRIVPGGAKMDTASMLDEAIRYTKFLKRQVRILQ 175

The following BLAST results are available for this feature:

BLAST of Lsi04G015500 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FHA7	3.4e-49	58.29	Transcription factor HEC1 OS=Arabidopsis thaliana OX=3702 GN=HEC1 PE=1 SV=1	[more]
Q9SND4	3.5e-46	54.59	Transcription factor HEC2 OS=Arabidopsis thaliana OX=3702 GN=HEC2 PE=1 SV=1	[more]
Q9LXD8	1.3e-32	50.30	Transcription factor HEC3 OS=Arabidopsis thaliana OX=3702 GN=HEC3 PE=1 SV=1	[more]
Q8S3D2	2.5e-28	67.39	Transcription factor bHLH87 OS=Arabidopsis thaliana OX=3702 GN=BHLH87 PE=1 SV=1	[more]
O81313	1.3e-27	64.65	Transcription factor IND OS=Arabidopsis thaliana OX=3702 GN=IND PE=1 SV=3	[more]

BLAST of Lsi04G015500 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BU58	9.5e-103	89.03	transcription factor HEC2-like OS=Cucumis melo OX=3656 GN=LOC103493551 PE=4 SV=1	[more]
A0A0A0L0B3	1.0e-101	87.76	BHLH domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G639900 PE=4 S...	[more]
A0A5A7V7R5	7.8e-97	88.50	Transcription factor HEC2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A6J1FE54	2.9e-83	80.52	transcription factor HEC2-like OS=Cucurbita moschata OX=3662 GN=LOC111443152 PE=...	[more]
A0A6J1IKS0	1.1e-82	81.50	transcription factor HEC2-like OS=Cucurbita maxima OX=3661 GN=LOC111476512 PE=4 ...	[more]

BLAST of Lsi04G015500 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038899834.1	6.3e-109	93.53	transcription factor HEC2-like [Benincasa hispida]	[more]
XP_008452566.1	2.0e-102	89.03	PREDICTED: transcription factor HEC2-like [Cucumis melo]	[more]
XP_004141382.1	2.2e-101	87.76	transcription factor HEC2 [Cucumis sativus] >KGN55203.1 hypothetical protein Csa...	[more]
KAA0064392.1	1.6e-96	88.50	transcription factor HEC2-like [Cucumis melo var. makuwa] >TYK20194.1 transcript...	[more]
XP_023536625.1	1.6e-83	81.50	transcription factor HEC2-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of Lsi04G015500 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G67060.1	2.4e-50	58.29	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT3G50330.1	2.5e-47	54.59	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT5G09750.1	9.2e-34	50.30	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT3G21330.1	1.8e-29	67.39	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT4G00120.1	8.9e-29	64.65	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	SMART	SM00353	finulus	coord: 136..185 e-value: 1.4E-13 score: 61.1
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	PFAM	PF00010	HLH	coord: 140..179 e-value: 1.4E-6 score: 28.2
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	PROSITE	PS50888	BHLH	coord: 130..179 score: 15.217952
IPR036638	Helix-loop-helix DNA-binding domain superfamily	GENE3D	4.10.280.10		coord: 133..192 e-value: 2.6E-12 score: 48.7
IPR036638	Helix-loop-helix DNA-binding domain superfamily	SUPERFAMILY	47459	HLH, helix-loop-helix DNA-binding domain	coord: 135..188
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 32..50
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 190..227
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 31..50
None	No IPR available	PANTHER	PTHR45914:SF29	BASIC HELIX-LOOP-HELIX (BHLH)-LIKE PROTEIN	coord: 1..222
None	No IPR available	PANTHER	PTHR45914	TRANSCRIPTION FACTOR HEC3-RELATED	coord: 1..222
None	No IPR available	CDD	cd11454	bHLH_AtIND_like	coord: 131..187 e-value: 1.03724E-27 score: 98.2329

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi04G015500.1	Lsi04G015500.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005634	nucleus
molecular_function	GO:0046983	protein dimerization activity