Lsi04G015140 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi04G015140
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	F-box protein GID2-like
Location	chr04: 22773692 .. 22774216 (+)
RNA-Seq Expression	Lsi04G015140
Synteny	Lsi04G015140

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGCGAGTTGTTCCAGATGGGGATGGGGATCGGAAGATGGGGAAGAAACCTAAGGCAGCGGACACCCAAGATTGTGCCGGAGAAGGAGATTCCTCCGACAAGACTGGATTTGTGAATTTGGATGATAATTTGCTGTTTGAGGTTTTTAAGCATGTGGATGCCAGGACTTTGGCCATGGCGGCATGTGTGAGCAAGCAATGGCACAAAACCGCCGAAGATGAGCGGCTTTGGGAGCTGATCTGCACCAGACACTGGGCCAACACCGGCTGCGGCAACCAACAACTCCGATCTGTAGTTCTGGCCCTCGGTGGCTTCCGTCGCCTTCACTCCCTTTTCATCTGGCCTCTTACCAAGCCCCAATCCTCCTCCTCCACATCTTCGTCGACATCTTGGTCTCCGTTTCCAGCGATGATGGGATCGAAGCCACCAGCCCGGTGGGGGAAAGATGAGGTCCATCTCTCACTCTCCCTTCTCTCAATTCGTTACTACGAGAAGATGAATTTCAGCAACAGAGGCAGATGA

mRNA sequence

ATGAAGCGAGTTGTTCCAGATGGGGATGGGGATCGGAAGATGGGGAAGAAACCTAAGGCAGCGGACACCCAAGATTGTGCCGGAGAAGGAGATTCCTCCGACAAGACTGGATTTGTGAATTTGGATGATAATTTGCTGTTTGAGGTTTTTAAGCATGTGGATGCCAGGACTTTGGCCATGGCGGCATGTGTGAGCAAGCAATGGCACAAAACCGCCGAAGATGAGCGGCTTTGGGAGCTGATCTGCACCAGACACTGGGCCAACACCGGCTGCGGCAACCAACAACTCCGATCTGTAGTTCTGGCCCTCGGTGGCTTCCGTCGCCTTCACTCCCTTTTCATCTGGCCTCTTACCAAGCCCCAATCCTCCTCCTCCACATCTTCGTCGACATCTTGGTCTCCGTTTCCAGCGATGATGGGATCGAAGCCACCAGCCCGGTGGGGGAAAGATGAGGTCCATCTCTCACTCTCCCTTCTCTCAATTCGTTACTACGAGAAGATGAATTTCAGCAACAGAGGCAGATGA

Coding sequence (CDS)

ATGAAGCGAGTTGTTCCAGATGGGGATGGGGATCGGAAGATGGGGAAGAAACCTAAGGCAGCGGACACCCAAGATTGTGCCGGAGAAGGAGATTCCTCCGACAAGACTGGATTTGTGAATTTGGATGATAATTTGCTGTTTGAGGTTTTTAAGCATGTGGATGCCAGGACTTTGGCCATGGCGGCATGTGTGAGCAAGCAATGGCACAAAACCGCCGAAGATGAGCGGCTTTGGGAGCTGATCTGCACCAGACACTGGGCCAACACCGGCTGCGGCAACCAACAACTCCGATCTGTAGTTCTGGCCCTCGGTGGCTTCCGTCGCCTTCACTCCCTTTTCATCTGGCCTCTTACCAAGCCCCAATCCTCCTCCTCCACATCTTCGTCGACATCTTGGTCTCCGTTTCCAGCGATGATGGGATCGAAGCCACCAGCCCGGTGGGGGAAAGATGAGGTCCATCTCTCACTCTCCCTTCTCTCAATTCGTTACTACGAGAAGATGAATTTCAGCAACAGAGGCAGATGA

Protein sequence

MKRVVPDGDGDRKMGKKPKAADTQDCAGEGDSSDKTGFVNLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPLTKPQSSSSTSSSTSWSPFPAMMGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNRGR

Homology

[Close]

BLAST of Lsi04G015140 vs. ExPASy Swiss-Prot
Match: Q9STX3 (F-box protein GID2 OS=Arabidopsis thaliana OX=3702 GN=GID2 PE=1 SV=1)

HSP 1 Score: 189.1 bits (479), Expect = 4.2e-47
Identity = 98/176 (55.68%), Postives = 118/176 (67.05%), Query Frame = 0


Query: 1   MKRVVPD----GDGDRKMGKKPKAADTQDCAGEGDSSDKTGFVNLDDNLLFEVFKHVDAR 60
           MKR   D    GD   +  KK K+ +           ++ GF NLD+NL++EV KHVDA+
Sbjct: 1   MKRSTTDSDLAGDAHNETNKKMKSTE----------EEEIGFSNLDENLVYEVLKHVDAK 60

Query: 61  TLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWP 120
           TLAM++CVSK WHKTA+DERLWELICTRHW N GCG  QLRSVVLALGGFRRLHSL++WP
Sbjct: 61  TLAMSSCVSKIWHKTAQDERLWELICTRHWTNIGCGQNQLRSVVLALGGFRRLHSLYLWP 120

Query: 121 LTKPQSSSSTSSSTSWSPFPAMMGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNR 173
           L+KP                      P AR+GKDE+ L+LSLLSIRYYEKM+F+ R
Sbjct: 121 LSKP---------------------NPRARFGKDELKLTLSLLSIRYYEKMSFTKR 145

[Close]

BLAST of Lsi04G015140 vs. ExPASy Swiss-Prot
Match: Q7XAK4 (F-box protein GID2 OS=Oryza sativa subsp. japonica OX=39947 GN=GID2 PE=1 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 9.6e-28
Identity = 68/144 (47.22%), Postives = 91/144 (63.19%), Query Frame = 0


Query: 27  AGEGDSSDKTGFVNLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHW 86
           AGEG   ++    +L ++L+FEV +  +ARTLA AACVS+ W + AEDERLWE  C R W
Sbjct: 65  AGEG---EQPRVPDLGEDLVFEVLRRAEARTLAAAACVSRGWRQLAEDERLWEAACVREW 124

Query: 87  ANTGCGNQQLRSVVLALGGFRRLHSLFIWPLTKPQSSSSTSSSTSW--SPFPAMMGSK-P 146
           AN G   +QLR+VVL+LGGFRRLH+++I PL              W  +  P   G + P
Sbjct: 125 ANLGFSERQLRAVVLSLGGFRRLHAVYIRPL-------------QWRGAGVPRQQGRRQP 184

Query: 147 PARWGKDEVHLSLSLLSIRYYEKM 168
           P R G+D+V LSLSL SI +++ M
Sbjct: 185 PVRLGRDQVQLSLSLFSIGFFQNM 192

[Close]

BLAST of Lsi04G015140 vs. ExPASy Swiss-Prot
Match: Q9LUB6 (F-box protein SNE OS=Arabidopsis thaliana OX=3702 GN=SNE PE=1 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 3.7e-11
Identity = 40/129 (31.01%), Postives = 64/129 (49.61%), Query Frame = 0


Query: 39  VNLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRS 98
           +N   ++L E+ + +D  +L  AACV + W   A ++ +WE +C R  +     +  LRS
Sbjct: 28  INDHHDVLVEILRRLDGSSLCSAACVCRLWSAVARNDSIWEELCFRQVSPR--PSLSLRS 87

Query: 99  VVLALGGFRRLHSLFIWPLTKPQSSSSTSSSTSWSPFPAMMGSKPPARWGKDEVHLSLSL 158
           VV ALGG+R L+ L I P                     ++   P   W +D++ LSLSL
Sbjct: 88  VVSALGGYRCLYFLCIRP---------------------VLARLPKLLWTRDQLQLSLSL 133

Query: 159 LSIRYYEKM 168
             + YYE++
Sbjct: 148 YCVHYYERL 133

[Close]

BLAST of Lsi04G015140 vs. ExPASy TrEMBL
Match: A0A0A0L2H5 (F-box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G641710 PE=4 SV=1)

HSP 1 Score: 315.5 bits (807), Expect = 1.4e-82
Identity = 162/191 (84.82%), Postives = 167/191 (87.43%), Query Frame = 0


Query: 1   MKRVVPDGDGDRKMGKKPKAADTQDC---AGEGDSSDKTGFVNLDDNLLFEVFKHVDART 60
           MKRVVPDG GDRKMGKKPK A+TQD     G  D SDKTGF+NLDDNLLFEVFKHVDART
Sbjct: 1   MKRVVPDGVGDRKMGKKPK-AETQDFTRGGGGEDCSDKTGFMNLDDNLLFEVFKHVDART 60

Query: 61  LAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPL 120
           LAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPL
Sbjct: 61  LAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPL 120

Query: 121 TKPQSSSSTSSST--------------SWSPFPAMMGSKPPARWGKDEVHLSLSLLSIRY 175
           TKPQSSSS+SSS+              SWSPFPAM+GSKPPARWGKDEVHLSLSLLSIRY
Sbjct: 121 TKPQSSSSSSSSSSSSSSSSASSSSSASWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRY 180

[Close]

BLAST of Lsi04G015140 vs. ExPASy TrEMBL
Match: A0A5A7VFE5 (F-box protein GID2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold134G002980 PE=4 SV=1)

HSP 1 Score: 312.4 bits (799), Expect = 1.2e-81
Identity = 161/191 (84.29%), Postives = 166/191 (86.91%), Query Frame = 0


Query: 1   MKRVVPDGDGDRKMGKKPKAADTQDC--AGEGDSSDKTGFVNLDDNLLFEVFKHVDARTL 60
           MKRVV DG GDRKMGKKPK A+TQD    G  D SDKTGF+NLDDNLLFEVFKHVDARTL
Sbjct: 1   MKRVVSDGVGDRKMGKKPK-AETQDFTRGGGEDCSDKTGFMNLDDNLLFEVFKHVDARTL 60

Query: 61  AMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPLT 120
           AMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPLT
Sbjct: 61  AMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPLT 120

Query: 121 KPQSSSSTSSST---------------SWSPFPAMMGSKPPARWGKDEVHLSLSLLSIRY 175
           KPQSSSS+SSS+               SWSPFPAM+GSKPPARWGKDEVHLSLSLLSIRY
Sbjct: 121 KPQSSSSSSSSSSPSSTSSSASSSSSASWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRY 180

[Close]

BLAST of Lsi04G015140 vs. ExPASy TrEMBL
Match: A0A1S3BV18 (F-box protein GID2-like OS=Cucumis melo OX=3656 GN=LOC103493580 PE=4 SV=1)

HSP 1 Score: 312.4 bits (799), Expect = 1.2e-81
Identity = 161/191 (84.29%), Postives = 166/191 (86.91%), Query Frame = 0


Query: 1   MKRVVPDGDGDRKMGKKPKAADTQDC--AGEGDSSDKTGFVNLDDNLLFEVFKHVDARTL 60
           MKRVV DG GDRKMGKKPK A+TQD    G  D SDKTGF+NLDDNLLFEVFKHVDARTL
Sbjct: 1   MKRVVSDGVGDRKMGKKPK-AETQDFTRGGGEDCSDKTGFMNLDDNLLFEVFKHVDARTL 60

Query: 61  AMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPLT 120
           AMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPLT
Sbjct: 61  AMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPLT 120

Query: 121 KPQSSSSTSSST---------------SWSPFPAMMGSKPPARWGKDEVHLSLSLLSIRY 175
           KPQSSSS+SSS+               SWSPFPAM+GSKPPARWGKDEVHLSLSLLSIRY
Sbjct: 121 KPQSSSSSSSSSSPSSTSSSASSSSSASWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRY 180

[Close]

BLAST of Lsi04G015140 vs. ExPASy TrEMBL
Match: A0A6J1ILD7 (F-box protein GID2-like OS=Cucurbita maxima OX=3661 GN=LOC111477283 PE=4 SV=1)

HSP 1 Score: 309.7 bits (792), Expect = 7.8e-81
Identity = 156/182 (85.71%), Postives = 163/182 (89.56%), Query Frame = 0


Query: 1   MKRVVPDGDGDRKMGKKPKAADTQDCAGEGDSSDKTGFVNLDDNLLFEVFKHVDARTLAM 60
           MKRVVP+G GDRK  KKP+A  + DC G G  SDKTGF+NLDDNLLFEVFKHVDARTLAM
Sbjct: 1   MKRVVPEGKGDRKTEKKPRAV-SHDCDG-GGVSDKTGFLNLDDNLLFEVFKHVDARTLAM 60

Query: 61  AACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPLTKP 120
           AACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPLTKP
Sbjct: 61  AACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPLTKP 120

Query: 121 QSSSSTSSSTS--------WSPFPAMMGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNR 175
           QSSSS+SSSTS        WSPFPAM+GSKPPARWGKDEVHLSLSLLSIRYYEKMNF +R
Sbjct: 121 QSSSSSSSSTSSSTSSSSPWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFGSR 180

[Close]

BLAST of Lsi04G015140 vs. ExPASy TrEMBL
Match: A0A6J1FA22 (F-box protein GID2-like OS=Cucurbita moschata OX=3662 GN=LOC111443649 PE=4 SV=1)

HSP 1 Score: 308.9 bits (790), Expect = 1.3e-80
Identity = 155/179 (86.59%), Postives = 163/179 (91.06%), Query Frame = 0


Query: 1   MKRVVPDGDGDRKMGKKPKAADTQDCAGEGDSSDKTGFVNLDDNLLFEVFKHVDARTLAM 60
           MKRVVP+G GDRK  KKP+A  + DC G G  SDKTGF+NLDDNLLFEVFKHVDARTLAM
Sbjct: 1   MKRVVPEGKGDRKTEKKPRAV-SHDCDG-GGVSDKTGFMNLDDNLLFEVFKHVDARTLAM 60

Query: 61  AACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPLTKP 120
           AACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPLTKP
Sbjct: 61  AACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPLTKP 120

Query: 121 QSSSST-----SSSTSWSPFPAMMGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNRGR 175
           QSSSS+     SSS+ WSPFPAM+GSKPPARWGKDEVHLSLSLLSIRYYEKMNFS+RGR
Sbjct: 121 QSSSSSTSSSASSSSPWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSSRGR 177

[Close]

BLAST of Lsi04G015140 vs. NCBI nr
Match: XP_038900230.1 (F-box protein GID2 [Benincasa hispida])

HSP 1 Score: 328.2 bits (840), Expect = 4.4e-86
Identity = 162/182 (89.01%), Postives = 168/182 (92.31%), Query Frame = 0


Query: 1   MKRVVPDGDGDRKMGKKPKAADTQDCAGEGDSSDKTGFVNLDDNLLFEVFKHVDARTLAM 60
           MKRVVPDGDGDRK GKKP+ A+TQDCAG GD SD+TGF+NLDDNLLFEVFKHVDARTLAM
Sbjct: 1   MKRVVPDGDGDRKTGKKPR-AETQDCAGGGDPSDRTGFMNLDDNLLFEVFKHVDARTLAM 60

Query: 61  AACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPLTKP 120
           AACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPLTKP
Sbjct: 61  AACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPLTKP 120

Query: 121 QSSS---------STSSSTSWSPFPAMMGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSN 174
           QSSS         S+SSS SWSPFPAM+GSKPPARWGKDEVHLSLSLLSIRYYEKMNFSN
Sbjct: 121 QSSSSSSSTSSSASSSSSASWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSN 180

[Close]

BLAST of Lsi04G015140 vs. NCBI nr
Match: XP_011654137.1 (F-box protein GID2 [Cucumis sativus] >KGN55239.1 hypothetical protein Csa_012230 [Cucumis sativus])

HSP 1 Score: 315.5 bits (807), Expect = 2.9e-82
Identity = 162/191 (84.82%), Postives = 167/191 (87.43%), Query Frame = 0


Query: 1   MKRVVPDGDGDRKMGKKPKAADTQDC---AGEGDSSDKTGFVNLDDNLLFEVFKHVDART 60
           MKRVVPDG GDRKMGKKPK A+TQD     G  D SDKTGF+NLDDNLLFEVFKHVDART
Sbjct: 1   MKRVVPDGVGDRKMGKKPK-AETQDFTRGGGGEDCSDKTGFMNLDDNLLFEVFKHVDART 60

Query: 61  LAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPL 120
           LAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPL
Sbjct: 61  LAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPL 120

Query: 121 TKPQSSSSTSSST--------------SWSPFPAMMGSKPPARWGKDEVHLSLSLLSIRY 175
           TKPQSSSS+SSS+              SWSPFPAM+GSKPPARWGKDEVHLSLSLLSIRY
Sbjct: 121 TKPQSSSSSSSSSSSSSSSSASSSSSASWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRY 180

[Close]

BLAST of Lsi04G015140 vs. NCBI nr
Match: XP_008452610.1 (PREDICTED: F-box protein GID2-like [Cucumis melo] >KAA0064421.1 F-box protein GID2-like [Cucumis melo var. makuwa] >TYK20166.1 F-box protein GID2-like [Cucumis melo var. makuwa])

HSP 1 Score: 312.4 bits (799), Expect = 2.5e-81
Identity = 161/191 (84.29%), Postives = 166/191 (86.91%), Query Frame = 0


Query: 1   MKRVVPDGDGDRKMGKKPKAADTQDC--AGEGDSSDKTGFVNLDDNLLFEVFKHVDARTL 60
           MKRVV DG GDRKMGKKPK A+TQD    G  D SDKTGF+NLDDNLLFEVFKHVDARTL
Sbjct: 1   MKRVVSDGVGDRKMGKKPK-AETQDFTRGGGEDCSDKTGFMNLDDNLLFEVFKHVDARTL 60

Query: 61  AMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPLT 120
           AMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPLT
Sbjct: 61  AMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPLT 120

Query: 121 KPQSSSSTSSST---------------SWSPFPAMMGSKPPARWGKDEVHLSLSLLSIRY 175
           KPQSSSS+SSS+               SWSPFPAM+GSKPPARWGKDEVHLSLSLLSIRY
Sbjct: 121 KPQSSSSSSSSSSPSSTSSSASSSSSASWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRY 180

[Close]

BLAST of Lsi04G015140 vs. NCBI nr
Match: XP_022977120.1 (F-box protein GID2-like [Cucurbita maxima])

HSP 1 Score: 309.7 bits (792), Expect = 1.6e-80
Identity = 156/182 (85.71%), Postives = 163/182 (89.56%), Query Frame = 0


Query: 1   MKRVVPDGDGDRKMGKKPKAADTQDCAGEGDSSDKTGFVNLDDNLLFEVFKHVDARTLAM 60
           MKRVVP+G GDRK  KKP+A  + DC G G  SDKTGF+NLDDNLLFEVFKHVDARTLAM
Sbjct: 1   MKRVVPEGKGDRKTEKKPRAV-SHDCDG-GGVSDKTGFLNLDDNLLFEVFKHVDARTLAM 60

Query: 61  AACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPLTKP 120
           AACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPLTKP
Sbjct: 61  AACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPLTKP 120

Query: 121 QSSSSTSSSTS--------WSPFPAMMGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNR 175
           QSSSS+SSSTS        WSPFPAM+GSKPPARWGKDEVHLSLSLLSIRYYEKMNF +R
Sbjct: 121 QSSSSSSSSTSSSTSSSSPWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFGSR 180

[Close]

BLAST of Lsi04G015140 vs. NCBI nr
Match: XP_022937325.1 (F-box protein GID2-like [Cucurbita moschata] >XP_022937326.1 F-box protein GID2-like [Cucurbita moschata])

HSP 1 Score: 308.9 bits (790), Expect = 2.7e-80
Identity = 155/179 (86.59%), Postives = 163/179 (91.06%), Query Frame = 0


Query: 1   MKRVVPDGDGDRKMGKKPKAADTQDCAGEGDSSDKTGFVNLDDNLLFEVFKHVDARTLAM 60
           MKRVVP+G GDRK  KKP+A  + DC G G  SDKTGF+NLDDNLLFEVFKHVDARTLAM
Sbjct: 1   MKRVVPEGKGDRKTEKKPRAV-SHDCDG-GGVSDKTGFMNLDDNLLFEVFKHVDARTLAM 60

Query: 61  AACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPLTKP 120
           AACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPLTKP
Sbjct: 61  AACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPLTKP 120

Query: 121 QSSSST-----SSSTSWSPFPAMMGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNRGR 175
           QSSSS+     SSS+ WSPFPAM+GSKPPARWGKDEVHLSLSLLSIRYYEKMNFS+RGR
Sbjct: 121 QSSSSSTSSSASSSSPWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSSRGR 177

[Close]

BLAST of Lsi04G015140 vs. TAIR 10
Match: AT4G24210.1 (F-box family protein )

HSP 1 Score: 189.1 bits (479), Expect = 3.0e-48
Identity = 98/176 (55.68%), Postives = 118/176 (67.05%), Query Frame = 0


Query: 1   MKRVVPD----GDGDRKMGKKPKAADTQDCAGEGDSSDKTGFVNLDDNLLFEVFKHVDAR 60
           MKR   D    GD   +  KK K+ +           ++ GF NLD+NL++EV KHVDA+
Sbjct: 1   MKRSTTDSDLAGDAHNETNKKMKSTE----------EEEIGFSNLDENLVYEVLKHVDAK 60

Query: 61  TLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWP 120
           TLAM++CVSK WHKTA+DERLWELICTRHW N GCG  QLRSVVLALGGFRRLHSL++WP
Sbjct: 61  TLAMSSCVSKIWHKTAQDERLWELICTRHWTNIGCGQNQLRSVVLALGGFRRLHSLYLWP 120

Query: 121 LTKPQSSSSTSSSTSWSPFPAMMGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNR 173
           L+KP                      P AR+GKDE+ L+LSLLSIRYYEKM+F+ R
Sbjct: 121 LSKP---------------------NPRARFGKDELKLTLSLLSIRYYEKMSFTKR 145

[Close]

BLAST of Lsi04G015140 vs. TAIR 10
Match: AT5G48170.1 (F-box family protein )

HSP 1 Score: 69.7 bits (169), Expect = 2.6e-12
Identity = 40/129 (31.01%), Postives = 64/129 (49.61%), Query Frame = 0


Query: 39  VNLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRS 98
           +N   ++L E+ + +D  +L  AACV + W   A ++ +WE +C R  +     +  LRS
Sbjct: 28  INDHHDVLVEILRRLDGSSLCSAACVCRLWSAVARNDSIWEELCFRQVSPR--PSLSLRS 87

Query: 99  VVLALGGFRRLHSLFIWPLTKPQSSSSTSSSTSWSPFPAMMGSKPPARWGKDEVHLSLSL 158
           VV ALGG+R L+ L I P                     ++   P   W +D++ LSLSL
Sbjct: 88  VVSALGGYRCLYFLCIRP---------------------VLARLPKLLWTRDQLQLSLSL 133

Query: 159 LSIRYYEKM 168
             + YYE++
Sbjct: 148 YCVHYYERL 133

[Close]

BLAST of Lsi04G015140 vs. TAIR 10
Match: AT1G21760.1 (F-box protein 7 )

HSP 1 Score: 43.1 bits (100), Expect = 2.6e-04
Identity = 18/50 (36.00%), Postives = 24/50 (48.00%), Query Frame = 0


Query: 41  LDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTG 91
           L D LLFEVF  +    L  A+CV ++W  T  +   W   C + W   G
Sbjct: 62  LPDELLFEVFARMMPYDLGRASCVCRKWRYTVRNPMFWRNACLKAWQTAG 111

The following BLAST results are available for this feature:

BLAST of Lsi04G015140 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9STX3	4.2e-47	55.68	F-box protein GID2 OS=Arabidopsis thaliana OX=3702 GN=GID2 PE=1 SV=1	[more]
Q7XAK4	9.6e-28	47.22	F-box protein GID2 OS=Oryza sativa subsp. japonica OX=39947 GN=GID2 PE=1 SV=1	[more]
Q9LUB6	3.7e-11	31.01	F-box protein SNE OS=Arabidopsis thaliana OX=3702 GN=SNE PE=1 SV=1	[more]

BLAST of Lsi04G015140 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L2H5	1.4e-82	84.82	F-box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G641710 PE=4 ...	[more]
A0A5A7VFE5	1.2e-81	84.29	F-box protein GID2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3BV18	1.2e-81	84.29	F-box protein GID2-like OS=Cucumis melo OX=3656 GN=LOC103493580 PE=4 SV=1	[more]
A0A6J1ILD7	7.8e-81	85.71	F-box protein GID2-like OS=Cucurbita maxima OX=3661 GN=LOC111477283 PE=4 SV=1	[more]
A0A6J1FA22	1.3e-80	86.59	F-box protein GID2-like OS=Cucurbita moschata OX=3662 GN=LOC111443649 PE=4 SV=1	[more]

BLAST of Lsi04G015140 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038900230.1	4.4e-86	89.01	F-box protein GID2 [Benincasa hispida]	[more]
XP_011654137.1	2.9e-82	84.82	F-box protein GID2 [Cucumis sativus] >KGN55239.1 hypothetical protein Csa_012230...	[more]
XP_008452610.1	2.5e-81	84.29	PREDICTED: F-box protein GID2-like [Cucumis melo] >KAA0064421.1 F-box protein GI...	[more]
XP_022977120.1	1.6e-80	85.71	F-box protein GID2-like [Cucurbita maxima]	[more]
XP_022937325.1	2.7e-80	86.59	F-box protein GID2-like [Cucurbita moschata] >XP_022937326.1 F-box protein GID2-...	[more]

BLAST of Lsi04G015140 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G24210.1	3.0e-48	55.68	F-box family protein	[more]
AT5G48170.1	2.6e-12	31.01	F-box family protein	[more]
AT1G21760.1	2.6e-04	36.00	F-box protein 7	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001810	F-box domain	SMART	SM00256	fbox_2	coord: 41..81 e-value: 0.0054 score: 26.0
IPR001810	F-box domain	PFAM	PF00646	F-box	coord: 40..82 e-value: 1.8E-7 score: 30.8
IPR001810	F-box domain	PROSITE	PS50181	FBOX	coord: 35..81 score: 9.232525
None	No IPR available	GENE3D	1.20.1280.50		coord: 31..133 e-value: 4.2E-12 score: 47.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..24
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..32
None	No IPR available	PANTHER	PTHR12874:SF22	F-BOX PROTEIN GID2-LIKE	coord: 16..169
IPR045118	F-box only protein FBXO9/FBXO48	PANTHER	PTHR12874	F-BOX ONLY PROTEIN 48-RELATED	coord: 16..169
IPR036047	F-box-like domain superfamily	SUPERFAMILY	81383	F-box domain	coord: 34..87

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi04G015140.1	Lsi04G015140.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009740	gibberellic acid mediated signaling pathway
biological_process	GO:0031146	SCF-dependent proteasomal ubiquitin-dependent protein catabolic process
biological_process	GO:0010162	seed dormancy process
biological_process	GO:0009845	seed germination
cellular_component	GO:0005634	nucleus
cellular_component	GO:0019005	SCF ubiquitin ligase complex
molecular_function	GO:0005515	protein binding