Lsi04G015130 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi04G015130
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Transmembrane protein
Location	chr04: 22756587 .. 22756877 (-)
RNA-Seq Expression	Lsi04G015130
Synteny	Lsi04G015130

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAATAGAATTGAGCGCCAAAGCATCAGCCAAACGTCTCTGTTTTGTTGTGGGTGTTCTGTTAATGGTGGCTTCGACCCATTTTCTAATTGTTGAAGGCAGAGTTTTAAAATCAAATTCAGAGAAGTTAGCTGATGGTGAGGAGAAAATGGAAGATGTGAAGGCAATAATTGGAATGGCGGCTTATATGGACAAAGTTAATTCATTAAGTAGCAGTAGTCGCAGTGCCTTTCGAAGCTTGAGTTTCGTGTTGGCGTCTGGGCCTAGTAAAAAGGGTCCTGGCCATTAA

mRNA sequence

ATGGCAATAGAATTGAGCGCCAAAGCATCAGCCAAACGTCTCTGTTTTGTTGTGGGTGTTCTGTTAATGGTGGCTTCGACCCATTTTCTAATTGTTGAAGGCAGAGTTTTAAAATCAAATTCAGAGAAGTTAGCTGATGGTGAGGAGAAAATGGAAGATGTGAAGGCAATAATTGGAATGGCGGCTTATATGGACAAAGTTAATTCATTAAGTAGCAGTAGTCGCAGTGCCTTTCGAAGCTTGAGTTTCGTGTTGGCGTCTGGGCCTAGTAAAAAGGGTCCTGGCCATTAA

Coding sequence (CDS)

ATGGCAATAGAATTGAGCGCCAAAGCATCAGCCAAACGTCTCTGTTTTGTTGTGGGTGTTCTGTTAATGGTGGCTTCGACCCATTTTCTAATTGTTGAAGGCAGAGTTTTAAAATCAAATTCAGAGAAGTTAGCTGATGGTGAGGAGAAAATGGAAGATGTGAAGGCAATAATTGGAATGGCGGCTTATATGGACAAAGTTAATTCATTAAGTAGCAGTAGTCGCAGTGCCTTTCGAAGCTTGAGTTTCGTGTTGGCGTCTGGGCCTAGTAAAAAGGGTCCTGGCCATTAA

Protein sequence

MAIELSAKASAKRLCFVVGVLLMVASTHFLIVEGRVLKSNSEKLADGEEKMEDVKAIIGMAAYMDKVNSLSSSSRSAFRSLSFVLASGPSKKGPGH

Homology

[Close]

BLAST of Lsi04G015130 vs. ExPASy TrEMBL
Match: A0A0A0KZV6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G641720 PE=4 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 4.8e-24
Identity = 66/92 (71.74%), Postives = 77/92 (83.70%), Query Frame = 0


Query: 5  LSAKASAKRLCFVVGVLLMVASTHFLIVEGRVLKSNSEKLADGEEKMEDVKAIIGMAAYM 64
          ++ K S K +CFVVGVLLM+ASTHFLIVEGRVL+S  EKLAD +E+ME VK I+     +
Sbjct: 1  MAMKLSTKSICFVVGVLLMMASTHFLIVEGRVLRSEEEKLADMKERMEGVKPIV----LV 60

Query: 65 DKVNSLSSSSRSAFRSLSFVLASGPSKKGPGH 97
          D+ NSLSSSSRS+FRSLSFVLASGPSKKGPGH
Sbjct: 61 DEANSLSSSSRSSFRSLSFVLASGPSKKGPGH 88

[Close]

BLAST of Lsi04G015130 vs. ExPASy TrEMBL
Match: A0A5D3D9C4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold134G002970 PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 6.8e-18
Identity = 55/74 (74.32%), Postives = 62/74 (83.78%), Query Frame = 0


Query: 23 MVASTHFLIVEGRVLKSNSEKLADGEEKMEDVKAIIGMAAYMDKVNSLSSSSRSAFRSLS 82
          M+ASTHFLIVEGRVL+S  EKLA  +EKME VK ++     MD+ NSLSSSSRS+FRSLS
Sbjct: 1  MMASTHFLIVEGRVLRSEEEKLAAMKEKMEGVKPVV-----MDEANSLSSSSRSSFRSLS 60

Query: 83 FVLASGPSKKGPGH 97
          FVLASGPSKKGPGH
Sbjct: 61 FVLASGPSKKGPGH 69

[Close]

BLAST of Lsi04G015130 vs. ExPASy TrEMBL
Match: U7DV09 (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_002G122200 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 3.7e-08
Identity = 42/97 (43.30%), Postives = 65/97 (67.01%), Query Frame = 0


Query: 1  MAIELSAKASAKRLCFVVGVLLMVASTHFLIVEGRVLKS-NSEKLADGEEKMEDVKAIIG 60
          M I    ++S K L FV+G++++V ST    V  R L+S NS  +A G ++++  +  +G
Sbjct: 1  MEISTKTRSSEKSLWFVLGLIILVVSTEMRAVHCRPLRSTNSTIIAAGCQQVDGTRGSMG 60

Query: 61 MAAYMDKVNSLSSSSRSAFRSLSFVLASGPSKKGPGH 97
          MA+++  V+S +SSSR + RSL F +ASGPSK+GPGH
Sbjct: 61 MASFV--VSSNNSSSRPSVRSLMFKMASGPSKRGPGH 95

[Close]

BLAST of Lsi04G015130 vs. ExPASy TrEMBL
Match: A0A5B7BBR4 (Uncharacterized protein (Fragment) OS=Davidia involucrata OX=16924 GN=Din_035355 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 6.3e-08
Identity = 43/87 (49.43%), Postives = 53/87 (60.92%), Query Frame = 0


Query: 10  SAKRLCFVVGVLLMVASTHFLIVEGRVLKSNSEKLADGEEKMEDVKAIIGMAAYMDKVNS 69
           S K LCFV+GV+++V  T F +V  R L+S  E    G E+    +    M  +    N+
Sbjct: 31  SMKSLCFVLGVMILVMGTQFSVVHCRALRSTEETTIAGCERANGAE----MVPFAVSSNN 90

Query: 70  LSSSSRSAFRSLSFVLASGPSKKGPGH 97
            SSSSRSA RSL F LASGPSKKGPGH
Sbjct: 91  -SSSSRSAVRSLVFKLASGPSKKGPGH 112

[Close]

BLAST of Lsi04G015130 vs. ExPASy TrEMBL
Match: A0A2P5EGP5 (Transmembrane protein OS=Trema orientale OX=63057 GN=TorRG33x02_195400 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 2.4e-07
Identity = 44/101 (43.56%), Postives = 58/101 (57.43%), Query Frame = 0


Query: 7   AKASAKRLCFVVGVLLMVASTHFLIVEGRVLKSNSEKL---ADGEEKMEDVKAIIGMAAY 66
           +K S K LCFV+G++L++ +  F   + R L+S        A G E+ E  +  +GMA++
Sbjct: 5   SKTSMKSLCFVLGLILIIVTAQFNEADCRALRSTENTASTGAGGCEQNEGREMAVGMASF 64

Query: 67  MDKVN--------SLSSSSRSAFRSLSFVLASGPSKKGPGH 97
               N        S SSSSR   RSLSF LASGPSKKGPGH
Sbjct: 65  AVSSNSSSSNSNTSTSSSSRPLARSLSFRLASGPSKKGPGH 105

[Close]

BLAST of Lsi04G015130 vs. NCBI nr
Match: KAG6591405.1 (hypothetical protein SDJN03_13751, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 135.2 bits (339), Expect = 3.0e-28
Identity = 76/96 (79.17%), Postives = 84/96 (87.50%), Query Frame = 0


Query: 1  MAIELSAKASAKRLCFVVGVLLMVASTHFLIVEGRVLKSNSEKLADGEEKMEDVKAIIGM 60
          MA+E+SA AS KRLCFVVGVLLMVAS HFL VEGR L+S SEKLADG+EKM  V+A IG+
Sbjct: 1  MAMEMSATASGKRLCFVVGVLLMVASAHFLTVEGRTLRSVSEKLADGKEKMGGVEA-IGV 60

Query: 61 AAYMDKVNSLSSSSRSAFRSLSFVLASGPSKKGPGH 97
          AA+ D+VNSLSSSS S FRSLSFVLASGPSKKGPGH
Sbjct: 61 AAFRDQVNSLSSSSHSEFRSLSFVLASGPSKKGPGH 95

[Close]

BLAST of Lsi04G015130 vs. NCBI nr
Match: KGN55240.1 (hypothetical protein Csa_012906 [Cucumis sativus])

HSP 1 Score: 120.2 bits (300), Expect = 1.0e-23
Identity = 66/92 (71.74%), Postives = 77/92 (83.70%), Query Frame = 0


Query: 5  LSAKASAKRLCFVVGVLLMVASTHFLIVEGRVLKSNSEKLADGEEKMEDVKAIIGMAAYM 64
          ++ K S K +CFVVGVLLM+ASTHFLIVEGRVL+S  EKLAD +E+ME VK I+     +
Sbjct: 1  MAMKLSTKSICFVVGVLLMMASTHFLIVEGRVLRSEEEKLADMKERMEGVKPIV----LV 60

Query: 65 DKVNSLSSSSRSAFRSLSFVLASGPSKKGPGH 97
          D+ NSLSSSSRS+FRSLSFVLASGPSKKGPGH
Sbjct: 61 DEANSLSSSSRSSFRSLSFVLASGPSKKGPGH 88

[Close]

BLAST of Lsi04G015130 vs. NCBI nr
Match: KAA0064422.1 (hypothetical protein E6C27_scaffold255G001300 [Cucumis melo var. makuwa] >TYK20165.1 hypothetical protein E5676_scaffold134G002970 [Cucumis melo var. makuwa])

HSP 1 Score: 99.8 bits (247), Expect = 1.4e-17
Identity = 55/74 (74.32%), Postives = 62/74 (83.78%), Query Frame = 0


Query: 23 MVASTHFLIVEGRVLKSNSEKLADGEEKMEDVKAIIGMAAYMDKVNSLSSSSRSAFRSLS 82
          M+ASTHFLIVEGRVL+S  EKLA  +EKME VK ++     MD+ NSLSSSSRS+FRSLS
Sbjct: 1  MMASTHFLIVEGRVLRSEEEKLAAMKEKMEGVKPVV-----MDEANSLSSSSRSSFRSLS 60

Query: 83 FVLASGPSKKGPGH 97
          FVLASGPSKKGPGH
Sbjct: 61 FVLASGPSKKGPGH 69

[Close]

BLAST of Lsi04G015130 vs. NCBI nr
Match: KAG6608443.1 (hypothetical protein SDJN03_01785, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 98.2 bits (243), Expect = 4.1e-17
Identity = 62/96 (64.58%), Postives = 69/96 (71.88%), Query Frame = 0


Query: 1  MAIELSAKASAKRLCFVVGVLLMVASTHFLIVEGRVLKSNSEKLADGEEKMEDVKAIIGM 60
          MA+EL   AS +RLCFVVGVLLMV  T F+ VEGRVLK     +AD     E V   IGM
Sbjct: 1  MAMELRGTASGRRLCFVVGVLLMVVWTQFVSVEGRVLKG----VAD-----EAVVEPIGM 60

Query: 61 AAYMDKVNSLSSSSRSAFRSLSFVLASGPSKKGPGH 97
           AYM  ++SLS SSRSAF SLSFVL+SGPSKKGPGH
Sbjct: 61 VAYMATLDSLSGSSRSAFSSLSFVLSSGPSKKGPGH 87

[Close]

BLAST of Lsi04G015130 vs. NCBI nr
Match: PNT49302.1 (hypothetical protein POPTR_002G122200 [Populus trichocarpa])

HSP 1 Score: 67.4 bits (163), Expect = 7.7e-08
Identity = 42/97 (43.30%), Postives = 65/97 (67.01%), Query Frame = 0


Query: 1  MAIELSAKASAKRLCFVVGVLLMVASTHFLIVEGRVLKS-NSEKLADGEEKMEDVKAIIG 60
          M I    ++S K L FV+G++++V ST    V  R L+S NS  +A G ++++  +  +G
Sbjct: 1  MEISTKTRSSEKSLWFVLGLIILVVSTEMRAVHCRPLRSTNSTIIAAGCQQVDGTRGSMG 60

Query: 61 MAAYMDKVNSLSSSSRSAFRSLSFVLASGPSKKGPGH 97
          MA+++  V+S +SSSR + RSL F +ASGPSK+GPGH
Sbjct: 61 MASFV--VSSNNSSSRPSVRSLMFKMASGPSKRGPGH 95

The following BLAST results are available for this feature:

BLAST of Lsi04G015130 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi04G015130 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KZV6	4.8e-24	71.74	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G641720 PE=4 SV=1	[more]
A0A5D3D9C4	6.8e-18	74.32	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
U7DV09	3.7e-08	43.30	Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_002G122200 PE=4 ...	[more]
A0A5B7BBR4	6.3e-08	49.43	Uncharacterized protein (Fragment) OS=Davidia involucrata OX=16924 GN=Din_035355...	[more]
A0A2P5EGP5	2.4e-07	43.56	Transmembrane protein OS=Trema orientale OX=63057 GN=TorRG33x02_195400 PE=4 SV=1	[more]

BLAST of Lsi04G015130 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6591405.1	3.0e-28	79.17	hypothetical protein SDJN03_13751, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KGN55240.1	1.0e-23	71.74	hypothetical protein Csa_012906 [Cucumis sativus]	[more]
KAA0064422.1	1.4e-17	74.32	hypothetical protein E6C27_scaffold255G001300 [Cucumis melo var. makuwa] >TYK201...	[more]
KAG6608443.1	4.1e-17	64.58	hypothetical protein SDJN03_01785, partial [Cucurbita argyrosperma subsp. sorori...	[more]
PNT49302.1	7.7e-08	43.30	hypothetical protein POPTR_002G122200 [Populus trichocarpa]	[more]

BLAST of Lsi04G015130 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi04G015130.1	Lsi04G015130.1	mRNA