Lsi04G015090 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi04G015090
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
DescriptionUnknown protein
Locationchr04: 22720693 .. 22720947 (+)
RNA-Seq ExpressionLsi04G015090
SyntenyLsi04G015090
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCATTTCCACTCTCCATGGAAGCTCGGGTGCTTCTGTTAATGGCGGTTATCACTCTTCTGGTCTCCGGTGATAACAAAGCGACAATGGGGGTTGCCCTCGTCGATGAACATCCACTGTCAAACATGCAGGAGAAGCACCGGAAGCATCTGCCGTCCCTGTCGTCGCCCCCGCCGTGGAGTCACTCGTTCAATGCTCTCTTTGCAAGCAAGAGGAAGGTTCCAAACACTTGGGATCCGCTCCACAATCGTTGA

mRNA sequence

ATGCCATTTCCACTCTCCATGGAAGCTCGGGTGCTTCTGTTAATGGCGGTTATCACTCTTCTGGTCTCCGGTGATAACAAAGCGACAATGGGGGTTGCCCTCGTCGATGAACATCCACTGTCAAACATGCAGGAGAAGCACCGGAAGCATCTGCCGTCCCTGTCGTCGCCCCCGCCGTGGAGTCACTCGTTCAATGCTCTCTTTGCAAGCAAGAGGAAGGTTCCAAACACTTGGGATCCGCTCCACAATCGTTGA

Coding sequence (CDS)

ATGCCATTTCCACTCTCCATGGAAGCTCGGGTGCTTCTGTTAATGGCGGTTATCACTCTTCTGGTCTCCGGTGATAACAAAGCGACAATGGGGGTTGCCCTCGTCGATGAACATCCACTGTCAAACATGCAGGAGAAGCACCGGAAGCATCTGCCGTCCCTGTCGTCGCCCCCGCCGTGGAGTCACTCGTTCAATGCTCTCTTTGCAAGCAAGAGGAAGGTTCCAAACACTTGGGATCCGCTCCACAATCGTTGA

Protein sequence

MPFPLSMEARVLLLMAVITLLVSGDNKATMGVALVDEHPLSNMQEKHRKHLPSLSSPPPWSHSFNALFASKRKVPNTWDPLHNR
Homology
BLAST of Lsi04G015090 vs. ExPASy TrEMBL
Match: A0A0A0KZW1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G641770 PE=4 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 5.7e-29
Identity = 69/81 (85.19%), Postives = 73/81 (90.12%), Query Frame = 0

Query: 7  MEARVLLLMAVITLLVSGDNKATMG---VALVDEHPLSNMQEKHRKHLPSLSSPPPWSHS 66
          MEAR+LLLMAVITLLVSGDNKATMG   VA +D+HPLSNMQEKHRKHL  LSSPPP SH 
Sbjct: 1  MEARLLLLMAVITLLVSGDNKATMGAAAVAFIDQHPLSNMQEKHRKHLQLLSSPPPRSHL 60

Query: 67 FNALFASKRKVPNTWDPLHNR 85
          FNALFASKRKVPNTWDP+HNR
Sbjct: 61 FNALFASKRKVPNTWDPIHNR 81

BLAST of Lsi04G015090 vs. ExPASy TrEMBL
Match: A0A5D3D9C5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold134G002930 PE=4 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 2.8e-20
Identity = 60/72 (83.33%), Postives = 63/72 (87.50%), Query Frame = 0

Query: 7  MEARVLLLMAVITLLVSGDNKATMG--VALVDEHPLSNMQEKHRKHLPSLSSPPPWSHSF 66
          MEAR+LLLMAVITLLVSG+NKATMG  VALVD+HPLSNMQEKHRKHL  LSSPP  SH F
Sbjct: 1  MEARLLLLMAVITLLVSGNNKATMGVAVALVDQHPLSNMQEKHRKHLQLLSSPPLRSHLF 60

Query: 67 NALFASKRKVPN 77
          NALFASKRK  N
Sbjct: 61 NALFASKRKSMN 72

BLAST of Lsi04G015090 vs. ExPASy TrEMBL
Match: A0A067L375 (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_16070 PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 3.7e-04
Identity = 33/84 (39.29%), Postives = 48/84 (57.14%), Query Frame = 0

Query: 1  MPFPLSMEARVLLLMAVITLLVSGDNKATMGVALVDEHPLSNMQEKHRKHLPSLSSPPPW 60
          M F    + ++++L+ + +LLVSG+ + TM V   D+      QEKH++           
Sbjct: 1  MHFHQFKQKKIIVLILLYSLLVSGEKEETMAVTHADDKQ-PRRQEKHQR----------L 60

Query: 61 SHSFNALFASKRKVPNTWDPLHNR 85
            SF+ LF+SKRKVPN  DPLHNR
Sbjct: 61 RSSFDVLFSSKRKVPNASDPLHNR 73

BLAST of Lsi04G015090 vs. ExPASy TrEMBL
Match: A0A5N5GV11 (Uncharacterized protein OS=Pyrus ussuriensis x Pyrus communis OX=2448454 GN=D8674_015318 PE=4 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 8.3e-04
Identity = 32/82 (39.02%), Postives = 47/82 (57.32%), Query Frame = 0

Query: 11  VLLLMAVITLLVSGDNKATMGVALVDEHPLS--------NMQEKHRKHLPSLSSPPPWSH 70
           VL+++  + +LVSGD + TM + L ++H  S          QE +++    L+S     H
Sbjct: 165 VLIVLVFLPMLVSGDRENTMQLGLREQHYFSLSPNKQAEKEQENNKQQQRRLNS----KH 224

Query: 71  SFNALFASKRKVPNTWDPLHNR 85
           S  A F+SKR+VPN  DPLHNR
Sbjct: 225 SLEAFFSSKRRVPNASDPLHNR 242

BLAST of Lsi04G015090 vs. NCBI nr
Match: KAE8649873.1 (hypothetical protein Csa_012848, partial [Cucumis sativus])

HSP 1 Score: 120.9 bits (302), Expect = 5.1e-24
Identity = 59/70 (84.29%), Postives = 62/70 (88.57%), Query Frame = 0

Query: 18 ITLLVSGDNKATMG---VALVDEHPLSNMQEKHRKHLPSLSSPPPWSHSFNALFASKRKV 77
          ITLLVSGDNKATMG   VA +D+HPLSNMQEKHRKHL  LSSPPP SH FNALFASKRKV
Sbjct: 1  ITLLVSGDNKATMGAAAVAFIDQHPLSNMQEKHRKHLQLLSSPPPRSHLFNALFASKRKV 60

Query: 78 PNTWDPLHNR 85
          PNTWDP+HNR
Sbjct: 61 PNTWDPIHNR 70

BLAST of Lsi04G015090 vs. NCBI nr
Match: KAA0064426.1 (hypothetical protein E6C27_scaffold255G001340 [Cucumis melo var. makuwa] >TYK20161.1 hypothetical protein E5676_scaffold134G002930 [Cucumis melo var. makuwa])

HSP 1 Score: 107.5 bits (267), Expect = 5.9e-20
Identity = 60/72 (83.33%), Postives = 63/72 (87.50%), Query Frame = 0

Query: 7  MEARVLLLMAVITLLVSGDNKATMG--VALVDEHPLSNMQEKHRKHLPSLSSPPPWSHSF 66
          MEAR+LLLMAVITLLVSG+NKATMG  VALVD+HPLSNMQEKHRKHL  LSSPP  SH F
Sbjct: 1  MEARLLLLMAVITLLVSGNNKATMGVAVALVDQHPLSNMQEKHRKHLQLLSSPPLRSHLF 60

Query: 67 NALFASKRKVPN 77
          NALFASKRK  N
Sbjct: 61 NALFASKRKSMN 72

BLAST of Lsi04G015090 vs. NCBI nr
Match: KDP41663.1 (hypothetical protein JCGZ_16070 [Jatropha curcas])

HSP 1 Score: 53.9 bits (128), Expect = 7.7e-04
Identity = 33/84 (39.29%), Postives = 48/84 (57.14%), Query Frame = 0

Query: 1  MPFPLSMEARVLLLMAVITLLVSGDNKATMGVALVDEHPLSNMQEKHRKHLPSLSSPPPW 60
          M F    + ++++L+ + +LLVSG+ + TM V   D+      QEKH++           
Sbjct: 1  MHFHQFKQKKIIVLILLYSLLVSGEKEETMAVTHADDKQ-PRRQEKHQR----------L 60

Query: 61 SHSFNALFASKRKVPNTWDPLHNR 85
            SF+ LF+SKRKVPN  DPLHNR
Sbjct: 61 RSSFDVLFSSKRKVPNASDPLHNR 73

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KZW15.7e-2985.19Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G641770 PE=4 SV=1[more]
A0A5D3D9C52.8e-2083.33Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A067L3753.7e-0439.29Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_16070 PE=4 SV=1[more]
A0A5N5GV118.3e-0439.02Uncharacterized protein OS=Pyrus ussuriensis x Pyrus communis OX=2448454 GN=D867... [more]
Match NameE-valueIdentityDescription
KAE8649873.15.1e-2484.29hypothetical protein Csa_012848, partial [Cucumis sativus][more]
KAA0064426.15.9e-2083.33hypothetical protein E6C27_scaffold255G001340 [Cucumis melo var. makuwa] >TYK201... [more]
KDP41663.17.7e-0439.29hypothetical protein JCGZ_16070 [Jatropha curcas][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR34277:SF1CLAVATA3/ESR (CLE) GENE FAMILY MEMBER MTCLE20coord: 9..84
IPR039316CLAVATA3/ESR (CLE)-related protein 25/26PANTHERPTHR34277CLAVATA3/ESR (CLE)-RELATED PROTEIN 26coord: 9..84

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi04G015090.1Lsi04G015090.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0045168 cell-cell signaling involved in cell fate commitment