Homology
BLAST of Lsi04G014570 vs. ExPASy Swiss-Prot
Match:
Q9C652 (RNA-binding protein 1 OS=Arabidopsis thaliana OX=3702 GN=RBP1 PE=2 SV=1)
HSP 1 Score: 139.8 bits (351), Expect = 4.0e-32
Identity = 75/145 (51.72%), Postives = 101/145 (69.66%), Query Frame = 0
Query: 1 MNMSNIRMENNNDQCRGRKIFVGGLSAELTEDEFKNYFEKFGKITDVVVMHDSVTNRPRG 60
MN M +N R +KIFVGGLS+ TE+EFK+YFE+FG+ TDVVVMHD VTNRPRG
Sbjct: 103 MNGGLREMSSNGVTSRTKKIFVGGLSSNTTEEEFKSYFERFGRTTDVVVMHDGVTNRPRG 162
Query: 61 FGFITFDSVESVDSVLQNNFHELNGRRVEVKRAIPKKG----NYNVGHIPNARTQGGKSP 120
FGF+T+DS +SV+ V+Q+NFHEL+ +RVEVKRAIPK+G N N +IP + + +P
Sbjct: 163 FGFVTYDSEDSVEVVMQSNFHELSDKRVEVKRAIPKEGIQSNNGNAVNIPPSYSSFQATP 222
Query: 121 -LPNRN-----VPFPYPYYGSGYTI 136
+P +N + FP P +G + +
Sbjct: 223 YVPEQNGYGMVLQFPPPVFGYHHNV 247
BLAST of Lsi04G014570 vs. ExPASy Swiss-Prot
Match:
Q8W034 (Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana OX=3702 GN=RNP1 PE=1 SV=1)
HSP 1 Score: 119.0 bits (297), Expect = 7.4e-26
Identity = 90/259 (34.75%), Postives = 124/259 (47.88%), Query Frame = 0
Query: 2 NMSNIRMENNNDQCRGRKIFVGGLSAELTEDEFKNYFEKFGKITDVVVMHDSVTNRPRGF 61
N++ R + + +KIFVGGL LT++EF+ YFE +G +TDV +M+D TNRPRGF
Sbjct: 94 NLNTSRSSGGDAYNKTKKIFVGGLPPTLTDEEFRQYFEVYGPVTDVAIMYDQATNRPRGF 153
Query: 62 GFITFDSVESVDSVLQNNFHELNGRRVEVKRAIPKKGNYNVGHIPNARTQGGKSP----- 121
GF++FDS ++VDSVL FH+L+G++VEVKRA+PK N G R+ GG
Sbjct: 154 GFVSFDSEDAVDSVLHKTFHDLSGKQVEVKRALPKDANPGGG----GRSMGGGGSGGYQG 213
Query: 122 -----------------LPNRNVPFPYPYYGS--------------GYTIYPGFT-PFPH 181
L +++V P YGS GY Y G+T
Sbjct: 214 YGGNESSYDGRMDSNRFLQHQSVGNGLPSYGSSGYGAGYGNGSNGAGYGAYGGYTGSAGG 273
Query: 182 YGGPGVDLYG-SNFYGNWFPPSFGNMASDGAWYAPNTFGVGMFPPPYRN----------S 213
YG YG +N G + S G +A +W P + G G P Y +
Sbjct: 274 YGAGATAGYGATNIPGAGYGSSTG-VAPRNSWDTPASSGYG--NPGYGSGAAHSGYGVPG 333
BLAST of Lsi04G014570 vs. ExPASy Swiss-Prot
Match:
Q96EP5 (DAZ-associated protein 1 OS=Homo sapiens OX=9606 GN=DAZAP1 PE=1 SV=1)
HSP 1 Score: 98.2 bits (243), Expect = 1.3e-19
Identity = 66/185 (35.68%), Postives = 93/185 (50.27%), Query Frame = 0
Query: 12 NDQCRGRKIFVGGLSAELTEDEFKNYFEKFGKITDVVVMHDSVTNRPRGFGFITFDSVES 71
+D + KIFVGG+ E E + YF+KFG +T+VV+++D+ RPRGFGFITF+ +S
Sbjct: 107 SDNSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQS 166
Query: 72 VDSVLQNNFHELNGRRVEVKRAIPKKGNYNVGHIPNARTQGGKSPLPNRNVPFPYPYYGS 131
VD + +FH++ G++VEVKRA P+ P A +Q G +PN +
Sbjct: 167 VDQAVNMHFHDIMGKKVEVKRAEPRDSKSQAPGQPGA-SQWGSRVVPNA---------AN 226
Query: 132 GYTIYPGFTPFPHYGGPGVDLYGSNFYGNWFPPSFGNMASDGAWYAPNTF-------GVG 190
G+ P T YG G+ + G + PP G GA P F G
Sbjct: 227 GWAGQPPPTWQQGYGPQGMWVPAGQAIGGYGPPPAGR----GAPPPPPPFTSYIVSTPPG 277
BLAST of Lsi04G014570 vs. ExPASy Swiss-Prot
Match:
Q98SJ2 (DAZ-associated protein 1 OS=Xenopus laevis OX=8355 GN=dazap1 PE=1 SV=1)
HSP 1 Score: 97.8 bits (242), Expect = 1.8e-19
Identity = 66/205 (32.20%), Postives = 93/205 (45.37%), Query Frame = 0
Query: 9 ENNNDQCRGRKIFVGGLSAELTEDEFKNYFEKFGKITDVVVMHDSVTNRPRGFGFITFDS 68
E + R KIFVGG+ E E K YF +FG +T+VV+++D+ RPRGFGFITF+
Sbjct: 105 EPRTENSRSNKIFVGGIPHNCGETELKEYFNRFGVVTEVVMIYDAEKQRPRGFGFITFED 164
Query: 69 VESVDSVLQNNFHELNGRRVEVKRAIPKKGNYNVGHIPNARTQGGKSPLPNRNVPFPYPY 128
+SVD + +FH++ G++VEVKRA P+ P + G ++ N
Sbjct: 165 EQSVDQAVNMHFHDIMGKKVEVKRAEPRDSKSQTPGPPGSNQWGSRAMQSTAN------- 224
Query: 129 YGSGYTIYPGFTPFPHYGGPGVDLYGSNFYGNWFPP-----SFGNMASDGAWYAPNTFG- 188
G+T G P G + G W P +G A G P +F
Sbjct: 225 ---GWT-----------GQPPQTWQGYSPQGMWMPTGQTIGGYGQPAGRGGPPPPPSFAP 284
Query: 189 ------VGMFPPPYRNSLIPPSYSS 202
G FPPP PP Y++
Sbjct: 285 FLVSTTPGPFPPPQG---FPPGYAT 285
BLAST of Lsi04G014570 vs. ExPASy Swiss-Prot
Match:
Q920Q6 (RNA-binding protein Musashi homolog 2 OS=Mus musculus OX=10090 GN=Msi2 PE=1 SV=1)
HSP 1 Score: 97.8 bits (242), Expect = 1.8e-19
Identity = 59/142 (41.55%), Postives = 81/142 (57.04%), Query Frame = 0
Query: 16 RGRKIFVGGLSAELTEDEFKNYFEKFGKITDVVVMHDSVTNRPRGFGFITFDSVESVDSV 75
R +KIFVGGLSA ++ K YFE+FGK+ D ++M D TNR RGFGF+TF++ + V+ V
Sbjct: 108 RTKKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKV 167
Query: 76 LQNNFHELNGRRVEVKRAIPKKGNYNVGHIPNARTQGGKSPLPNRNVPF-------PYPY 135
+ +FHE+N + VE K+A PK+ + G T+G LP F YP
Sbjct: 168 CEIHFHEINNKMVECKKAQPKEVMFPPG------TRGRARGLPYTMDAFMLGMGMLGYPN 227
Query: 136 YGSGY-TIYPGFTPFPHYGGPG 150
+ + Y YPGF P Y PG
Sbjct: 228 FVATYGRGYPGFAPSYGYQFPG 243
BLAST of Lsi04G014570 vs. ExPASy TrEMBL
Match:
A0A0A0L563 (RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G644730 PE=4 SV=1)
HSP 1 Score: 363.2 bits (931), Expect = 8.3e-97
Identity = 190/244 (77.87%), Postives = 203/244 (83.20%), Query Frame = 0
Query: 3 MSNIRMENNNDQCRGRKIFVGGLSAELTEDEFKNYFEKFGKITDVVVMHDSVTNRPRGFG 62
MS RM+NNNDQCRGRKIFVGGLSAELTE+EF++YFE FG+ITDVVVMHDSVTNRPRGFG
Sbjct: 1 MSTTRMDNNNDQCRGRKIFVGGLSAELTEEEFRSYFENFGQITDVVVMHDSVTNRPRGFG 60
Query: 63 FITFDSVESVDSVLQNNFHELNGRRVEVKRAIPKKGNYNVGHIPNARTQGGKSPL--PNR 122
F+TF+S+ESVDSVLQ NFHELNGRRVEVKRAIPKKGNYN HIPNAR KSPL NR
Sbjct: 61 FVTFESLESVDSVLQRNFHELNGRRVEVKRAIPKKGNYNGVHIPNAR--AAKSPLLNGNR 120
Query: 123 NVPFPYPYYGSGYTIYPGFTPFPHYGGPGVDLYGSNFYGNWFPPSFGNMASDGAWYAPNT 182
NVPFPYPYYGSGY IYPGFT FPHYG VD YGSNFYGNWFPP N+ASDG W+ PN
Sbjct: 121 NVPFPYPYYGSGYPIYPGFTHFPHYGA-AVDSYGSNFYGNWFPPGSANIASDGWWHGPNF 180
Query: 183 FGVGMFPPPYRNSLIPPSYSSKGISDTGTGNGMA-IRNGEIKQNTSGKRSMSADALPFQI 242
F VGM PP RNSL+ P SKGI G+ NGMA RNGEIKQNT+GKR MSADA PFQI
Sbjct: 181 FSVGMLPPLCRNSLMHP---SKGIY-IGSRNGMANTRNGEIKQNTAGKRIMSADAAPFQI 237
Query: 243 KDRT 244
KDRT
Sbjct: 241 KDRT 237
BLAST of Lsi04G014570 vs. ExPASy TrEMBL
Match:
A0A6J1J2K5 (RNA-binding protein 1-like OS=Cucurbita maxima OX=3661 GN=LOC111481242 PE=4 SV=1)
HSP 1 Score: 313.2 bits (801), Expect = 9.9e-82
Identity = 166/241 (68.88%), Postives = 184/241 (76.35%), Query Frame = 0
Query: 3 MSN-IRMENNNDQCRGRKIFVGGLSAELTEDEFKNYFEKFGKITDVVVMHDSVTNRPRGF 62
MSN RME DQ RGRKIFVGGLSAELTED+FKNYFEKFG++TDVVVM DSVT RPRGF
Sbjct: 1 MSNGTRME---DQFRGRKIFVGGLSAELTEDDFKNYFEKFGRVTDVVVMRDSVTKRPRGF 60
Query: 63 GFITFDSVESVDSVLQNNFHELNGRRVEVKRAIPKKGNYNVGHIPNARTQGGKSPLPNRN 122
GFITFDSV+SVDSVLQNNFHELNGRRVEVKRAIPKKGNYN GHI KSPL N
Sbjct: 61 GFITFDSVQSVDSVLQNNFHELNGRRVEVKRAIPKKGNYNGGHI-------SKSPLSESN 120
Query: 123 VPFPYPYYGSGYTIYPGFTPFPHYGGPGVDLYGSNFYGNWFPPSFGNMASDGAWYAPNTF 182
V YPYY GYT+YPGFTPFP Y GPG LYGS+ YGNWF PSFG MAS AWY PN F
Sbjct: 121 VLPSYPYYSCGYTVYPGFTPFPPY-GPGFGLYGSDPYGNWFSPSFGPMASPAAWYGPNFF 180
Query: 183 GVGMFPPPYRNSLIPPSYSSKGISDTGTGNGMAIRNGEIKQNTSGKRSMSADALPFQIKD 242
GMFPPP++NSL+ P+YSS G+S G A +++ T +++MSADA+PF KD
Sbjct: 181 --GMFPPPHKNSLVYPTYSSNGLSTPVAGYETADARRKVEPPTRAQKNMSADAVPFHAKD 228
BLAST of Lsi04G014570 vs. ExPASy TrEMBL
Match:
A0A6J1FS87 (RNA-binding protein 1-like OS=Cucurbita moschata OX=3662 GN=LOC111446397 PE=4 SV=1)
HSP 1 Score: 312.0 bits (798), Expect = 2.2e-81
Identity = 160/230 (69.57%), Postives = 178/230 (77.39%), Query Frame = 0
Query: 13 DQCRGRKIFVGGLSAELTEDEFKNYFEKFGKITDVVVMHDSVTNRPRGFGFITFDSVESV 72
DQ RGRKIFVGGLSAELTED+FKNYFEKFG++TDVVVM DSVT RPRGFGFITFDSV+SV
Sbjct: 9 DQFRGRKIFVGGLSAELTEDDFKNYFEKFGRVTDVVVMRDSVTKRPRGFGFITFDSVQSV 68
Query: 73 DSVLQNNFHELNGRRVEVKRAIPKKGNYNVGHIPNARTQGGKSPLPNRNVPFPYPYYGSG 132
DSVLQNNFHELNGRRVEVKRAIPKKGNYN GHI KSPL NV YPYY G
Sbjct: 69 DSVLQNNFHELNGRRVEVKRAIPKKGNYNGGHI-------SKSPLSESNVLPSYPYYSCG 128
Query: 133 YTIYPGFTPFPHYGGPGVDLYGSNFYGNWFPPSFGNMASDGAWYAPNTFGVGMFPPPYRN 192
YT+YPGFTPFP Y GPG LYGS+ YGNWF PSFG MAS AWYAPN F GMFPPP++N
Sbjct: 129 YTVYPGFTPFPPY-GPGFGLYGSDPYGNWFSPSFGPMASPAAWYAPNFF--GMFPPPHKN 188
Query: 193 SLIPPSYSSKGISDTGTGNGMAIRNGEIKQNTSGKRSMSADALPFQIKDR 243
SL+ P+YSS G+S G A ++ T +++MSADA+PF KD+
Sbjct: 189 SLVYPTYSSNGLSTPVAGYETADARRKVDPPTRAQKNMSADAVPFHAKDK 228
BLAST of Lsi04G014570 vs. ExPASy TrEMBL
Match:
A0A6J1C724 (RNA-binding protein 1-like OS=Momordica charantia OX=3673 GN=LOC111008498 PE=4 SV=1)
HSP 1 Score: 262.3 bits (669), Expect = 2.0e-66
Identity = 148/251 (58.96%), Postives = 177/251 (70.52%), Query Frame = 0
Query: 1 MNMSNIRMENNNDQCRGRKIFVGGLSAELTEDEFKNYFEKFGKITDVVVMHDSVTNRPRG 60
MN S+ RME+NNDQ RG+KIFVGGL ++LTE+EFK+YFEKFG+ITDVVVM DSVTNRPRG
Sbjct: 1 MNKSSNRMESNNDQSRGKKIFVGGLPSDLTENEFKSYFEKFGQITDVVVMQDSVTNRPRG 60
Query: 61 FGFITFDSVESVDSVLQNNFHELNGRRVEVKRAIPKKGNYNVGHIPNARTQGGKSPLPNR 120
FGFITFDSVESV+ VLQNNFHELNGRRVEVKRA+PK N N ++ Q GKSPL +
Sbjct: 61 FGFITFDSVESVNYVLQNNFHELNGRRVEVKRAVPKNRNCN-----SSNPQRGKSPL-SP 120
Query: 121 NVPFPYPYYGSGYTIYPGFTPFPHYGGPGVDLYGSNFYGNW-FPPSFGN------MASDG 180
+VP YP++ SG +YPG+ PFPHY YGS+ YG+W + +G +
Sbjct: 121 HVPLYYPHFSSGPVVYPGYAPFPHY-------YGSSLYGSWHYNGLYGTGHEAPPLPLGS 180
Query: 181 AWYAPNTFGVGMFPPPYRNSLIPPSYSSKG--ISDTGTGNGMAIRNGEIKQNTSGKRSMS 240
AWYAPN FG GMFP PY NS+I P YSSKG + D GNG RNG +MS
Sbjct: 181 AWYAPNVFGDGMFPSPYINSVIHPVYSSKGGRLLDPMAGNGR--RNG----------NMS 226
Query: 241 ADALPFQIKDR 243
ADA+PFQ+ +R
Sbjct: 241 ADAVPFQLNNR 226
BLAST of Lsi04G014570 vs. ExPASy TrEMBL
Match:
A0A5N6R9D7 (Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_013735 PE=4 SV=1)
HSP 1 Score: 201.1 bits (510), Expect = 5.5e-48
Identity = 105/212 (49.53%), Postives = 134/212 (63.21%), Query Frame = 0
Query: 9 ENNNDQCRGRKIFVGGLSAELTEDEFKNYFEKFGKITDVVVMHDSVTNRPRGFGFITFDS 68
+N ++Q R +KIFVGGLSA LTE+EFKNYF++FG++TDVVVMHDS T+RPRGFGFITFDS
Sbjct: 108 DNGDNQFRTKKIFVGGLSASLTEEEFKNYFKRFGRVTDVVVMHDSTTHRPRGFGFITFDS 167
Query: 69 VESVDSVLQNNFHELNGRRVEVKRAIPKKGNYNVGHIPNARTQGGKSPLPNRNVPFPYPY 128
ESV++V+QN+FHELNGR VEVKRA+PK+ N N R +GG R P +P
Sbjct: 168 EESVENVMQNSFHELNGRLVEVKRAVPKEVNNGSDSGFNTRIEGG------RGSPGSFPP 227
Query: 129 YGSGYTIYPGFTPFPHYGGPGVDLYGSNFYGNWFPPS--------FGNMASDGAWYAPNT 188
Y Y I PG+ PFP + G G LYG++ Y W+P +A WY P
Sbjct: 228 YSLRYWILPGYVPFPGFSGGGGSLYGASMYSGWYPSGGSGGVGSVVAPLAPRNPWYGPRV 287
Query: 189 FGVGMFPPPYRNSLIPPSYSSKGISDTGTGNG 213
G G FP P ++ I P+Y + G+ G G
Sbjct: 288 IGAGAFPLPPGSASIYPAYFTGGVGGIGMSAG 313
BLAST of Lsi04G014570 vs. NCBI nr
Match:
XP_038898856.1 (RNA-binding protein 1-like [Benincasa hispida])
HSP 1 Score: 453.8 bits (1166), Expect = 9.7e-124
Identity = 220/247 (89.07%), Postives = 229/247 (92.71%), Query Frame = 0
Query: 1 MNMSNIRMENNNDQCRGRKIFVGGLSAELTEDEFKNYFEKFGKITDVVVMHDSVTNRPRG 60
M MS RMENNNDQCRGRKIFVGGLSAELTEDEFKNYFEKFGKITDVVVMHDSVTNRPRG
Sbjct: 1 MIMSTTRMENNNDQCRGRKIFVGGLSAELTEDEFKNYFEKFGKITDVVVMHDSVTNRPRG 60
Query: 61 FGFITFDSVESVDSVLQNNFHELNGRRVEVKRAIPKKGNYNVGHIPNARTQGGKSPLP-- 120
FGFITF+SVESVDSVLQ+NFHELNGRRVEVKRAIPKKGNYN GHIPNARTQGGKSPLP
Sbjct: 61 FGFITFESVESVDSVLQSNFHELNGRRVEVKRAIPKKGNYNGGHIPNARTQGGKSPLPNS 120
Query: 121 NRNVPFPYPYYGSGYTIYPGFTPFPHYGGPGVDLYGSNFYGNWFPPSFGNMASDGAWYAP 180
NRNVPFPYPYYGS Y +YPGFTPFPHYGGPGVDLYGS+ YGNWFPPSFGNMAS+G WY P
Sbjct: 121 NRNVPFPYPYYGSSYPVYPGFTPFPHYGGPGVDLYGSHLYGNWFPPSFGNMASEGTWYGP 180
Query: 181 NTFGVGMFPPPYRNSLIPPSYSSKGISDTGTGNGM--AIRNGEIKQNTSGKRSMSADALP 240
N FGVG+FPPPYRNSLIPP YSSKG+SDTGTGNGM RNGEIKQNT+GKR MSADA+P
Sbjct: 181 NFFGVGIFPPPYRNSLIPPIYSSKGLSDTGTGNGMVDTRRNGEIKQNTTGKRIMSADAVP 240
Query: 241 FQIKDRT 244
FQIKDRT
Sbjct: 241 FQIKDRT 247
BLAST of Lsi04G014570 vs. NCBI nr
Match:
KAE8649895.1 (hypothetical protein Csa_012205 [Cucumis sativus])
HSP 1 Score: 365.9 bits (938), Expect = 2.6e-97
Identity = 191/246 (77.64%), Postives = 205/246 (83.33%), Query Frame = 0
Query: 1 MNMSNIRMENNNDQCRGRKIFVGGLSAELTEDEFKNYFEKFGKITDVVVMHDSVTNRPRG 60
+NMS RM+NNNDQCRGRKIFVGGLSAELTE+EF++YFE FG+ITDVVVMHDSVTNRPRG
Sbjct: 51 LNMSTTRMDNNNDQCRGRKIFVGGLSAELTEEEFRSYFENFGQITDVVVMHDSVTNRPRG 110
Query: 61 FGFITFDSVESVDSVLQNNFHELNGRRVEVKRAIPKKGNYNVGHIPNARTQGGKSPL--P 120
FGF+TF+S+ESVDSVLQ NFHELNGRRVEVKRAIPKKGNYN HIPNAR KSPL
Sbjct: 111 FGFVTFESLESVDSVLQRNFHELNGRRVEVKRAIPKKGNYNGVHIPNAR--AAKSPLLNG 170
Query: 121 NRNVPFPYPYYGSGYTIYPGFTPFPHYGGPGVDLYGSNFYGNWFPPSFGNMASDGAWYAP 180
NRNVPFPYPYYGSGY IYPGFT FPHYG VD YGSNFYGNWFPP N+ASDG W+ P
Sbjct: 171 NRNVPFPYPYYGSGYPIYPGFTHFPHYGA-AVDSYGSNFYGNWFPPGSANIASDGWWHGP 230
Query: 181 NTFGVGMFPPPYRNSLIPPSYSSKGISDTGTGNGMA-IRNGEIKQNTSGKRSMSADALPF 240
N F VGM PP RNSL+ P SKGI G+ NGMA RNGEIKQNT+GKR MSADA PF
Sbjct: 231 NFFSVGMLPPLCRNSLMHP---SKGIY-IGSRNGMANTRNGEIKQNTAGKRIMSADAAPF 289
Query: 241 QIKDRT 244
QIKDRT
Sbjct: 291 QIKDRT 289
BLAST of Lsi04G014570 vs. NCBI nr
Match:
XP_004141412.1 (RNA-binding protein 1 [Cucumis sativus])
HSP 1 Score: 363.2 bits (931), Expect = 1.7e-96
Identity = 190/244 (77.87%), Postives = 203/244 (83.20%), Query Frame = 0
Query: 3 MSNIRMENNNDQCRGRKIFVGGLSAELTEDEFKNYFEKFGKITDVVVMHDSVTNRPRGFG 62
MS RM+NNNDQCRGRKIFVGGLSAELTE+EF++YFE FG+ITDVVVMHDSVTNRPRGFG
Sbjct: 1 MSTTRMDNNNDQCRGRKIFVGGLSAELTEEEFRSYFENFGQITDVVVMHDSVTNRPRGFG 60
Query: 63 FITFDSVESVDSVLQNNFHELNGRRVEVKRAIPKKGNYNVGHIPNARTQGGKSPL--PNR 122
F+TF+S+ESVDSVLQ NFHELNGRRVEVKRAIPKKGNYN HIPNAR KSPL NR
Sbjct: 61 FVTFESLESVDSVLQRNFHELNGRRVEVKRAIPKKGNYNGVHIPNAR--AAKSPLLNGNR 120
Query: 123 NVPFPYPYYGSGYTIYPGFTPFPHYGGPGVDLYGSNFYGNWFPPSFGNMASDGAWYAPNT 182
NVPFPYPYYGSGY IYPGFT FPHYG VD YGSNFYGNWFPP N+ASDG W+ PN
Sbjct: 121 NVPFPYPYYGSGYPIYPGFTHFPHYGA-AVDSYGSNFYGNWFPPGSANIASDGWWHGPNF 180
Query: 183 FGVGMFPPPYRNSLIPPSYSSKGISDTGTGNGMA-IRNGEIKQNTSGKRSMSADALPFQI 242
F VGM PP RNSL+ P SKGI G+ NGMA RNGEIKQNT+GKR MSADA PFQI
Sbjct: 181 FSVGMLPPLCRNSLMHP---SKGIY-IGSRNGMANTRNGEIKQNTAGKRIMSADAAPFQI 237
Query: 243 KDRT 244
KDRT
Sbjct: 241 KDRT 237
BLAST of Lsi04G014570 vs. NCBI nr
Match:
XP_022982410.1 (RNA-binding protein 1-like [Cucurbita maxima])
HSP 1 Score: 313.2 bits (801), Expect = 2.0e-81
Identity = 166/241 (68.88%), Postives = 184/241 (76.35%), Query Frame = 0
Query: 3 MSN-IRMENNNDQCRGRKIFVGGLSAELTEDEFKNYFEKFGKITDVVVMHDSVTNRPRGF 62
MSN RME DQ RGRKIFVGGLSAELTED+FKNYFEKFG++TDVVVM DSVT RPRGF
Sbjct: 1 MSNGTRME---DQFRGRKIFVGGLSAELTEDDFKNYFEKFGRVTDVVVMRDSVTKRPRGF 60
Query: 63 GFITFDSVESVDSVLQNNFHELNGRRVEVKRAIPKKGNYNVGHIPNARTQGGKSPLPNRN 122
GFITFDSV+SVDSVLQNNFHELNGRRVEVKRAIPKKGNYN GHI KSPL N
Sbjct: 61 GFITFDSVQSVDSVLQNNFHELNGRRVEVKRAIPKKGNYNGGHI-------SKSPLSESN 120
Query: 123 VPFPYPYYGSGYTIYPGFTPFPHYGGPGVDLYGSNFYGNWFPPSFGNMASDGAWYAPNTF 182
V YPYY GYT+YPGFTPFP Y GPG LYGS+ YGNWF PSFG MAS AWY PN F
Sbjct: 121 VLPSYPYYSCGYTVYPGFTPFPPY-GPGFGLYGSDPYGNWFSPSFGPMASPAAWYGPNFF 180
Query: 183 GVGMFPPPYRNSLIPPSYSSKGISDTGTGNGMAIRNGEIKQNTSGKRSMSADALPFQIKD 242
GMFPPP++NSL+ P+YSS G+S G A +++ T +++MSADA+PF KD
Sbjct: 181 --GMFPPPHKNSLVYPTYSSNGLSTPVAGYETADARRKVEPPTRAQKNMSADAVPFHAKD 228
BLAST of Lsi04G014570 vs. NCBI nr
Match:
XP_022940975.1 (RNA-binding protein 1-like [Cucurbita moschata])
HSP 1 Score: 312.0 bits (798), Expect = 4.5e-81
Identity = 160/230 (69.57%), Postives = 178/230 (77.39%), Query Frame = 0
Query: 13 DQCRGRKIFVGGLSAELTEDEFKNYFEKFGKITDVVVMHDSVTNRPRGFGFITFDSVESV 72
DQ RGRKIFVGGLSAELTED+FKNYFEKFG++TDVVVM DSVT RPRGFGFITFDSV+SV
Sbjct: 9 DQFRGRKIFVGGLSAELTEDDFKNYFEKFGRVTDVVVMRDSVTKRPRGFGFITFDSVQSV 68
Query: 73 DSVLQNNFHELNGRRVEVKRAIPKKGNYNVGHIPNARTQGGKSPLPNRNVPFPYPYYGSG 132
DSVLQNNFHELNGRRVEVKRAIPKKGNYN GHI KSPL NV YPYY G
Sbjct: 69 DSVLQNNFHELNGRRVEVKRAIPKKGNYNGGHI-------SKSPLSESNVLPSYPYYSCG 128
Query: 133 YTIYPGFTPFPHYGGPGVDLYGSNFYGNWFPPSFGNMASDGAWYAPNTFGVGMFPPPYRN 192
YT+YPGFTPFP Y GPG LYGS+ YGNWF PSFG MAS AWYAPN F GMFPPP++N
Sbjct: 129 YTVYPGFTPFPPY-GPGFGLYGSDPYGNWFSPSFGPMASPAAWYAPNFF--GMFPPPHKN 188
Query: 193 SLIPPSYSSKGISDTGTGNGMAIRNGEIKQNTSGKRSMSADALPFQIKDR 243
SL+ P+YSS G+S G A ++ T +++MSADA+PF KD+
Sbjct: 189 SLVYPTYSSNGLSTPVAGYETADARRKVDPPTRAQKNMSADAVPFHAKDK 228
BLAST of Lsi04G014570 vs. TAIR 10
Match:
AT1G58470.1 (RNA-binding protein 1 )
HSP 1 Score: 139.8 bits (351), Expect = 2.9e-33
Identity = 75/145 (51.72%), Postives = 101/145 (69.66%), Query Frame = 0
Query: 1 MNMSNIRMENNNDQCRGRKIFVGGLSAELTEDEFKNYFEKFGKITDVVVMHDSVTNRPRG 60
MN M +N R +KIFVGGLS+ TE+EFK+YFE+FG+ TDVVVMHD VTNRPRG
Sbjct: 103 MNGGLREMSSNGVTSRTKKIFVGGLSSNTTEEEFKSYFERFGRTTDVVVMHDGVTNRPRG 162
Query: 61 FGFITFDSVESVDSVLQNNFHELNGRRVEVKRAIPKKG----NYNVGHIPNARTQGGKSP 120
FGF+T+DS +SV+ V+Q+NFHEL+ +RVEVKRAIPK+G N N +IP + + +P
Sbjct: 163 FGFVTYDSEDSVEVVMQSNFHELSDKRVEVKRAIPKEGIQSNNGNAVNIPPSYSSFQATP 222
Query: 121 -LPNRN-----VPFPYPYYGSGYTI 136
+P +N + FP P +G + +
Sbjct: 223 YVPEQNGYGMVLQFPPPVFGYHHNV 247
BLAST of Lsi04G014570 vs. TAIR 10
Match:
AT4G26650.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )
HSP 1 Score: 127.5 bits (319), Expect = 1.5e-29
Identity = 75/158 (47.47%), Postives = 91/158 (57.59%), Query Frame = 0
Query: 11 NNDQCRGRKIFVGGLSAELTEDEFKNYFEKFGKITDVVVMHDSVTNRPRGFGFITFDSVE 70
N R +KIFVGGL + +TE EFKNYF++FG I DVVVM+D T RPRGFGFITFDS E
Sbjct: 115 NGGGARTKKIFVGGLPSSITEAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSEE 174
Query: 71 SVDSVLQNNFHELNGRRVEVKRAIPKKGNYNVGHIPNARTQGGKSPLPNRNVPFPYPYYG 130
SVD VL FHELNG+ VEVKRA+PK+ + S PNR+ P YG
Sbjct: 175 SVDMVLHKTFHELNGKMVEVKRAVPKELS---------------STTPNRS---PLIGYG 234
Query: 131 SGYTIYPGFTPFPHYGGPGVDLYGSNFYGNWFPPSFGN 169
+ Y + P + +N Y N FPP + N
Sbjct: 235 NNYGVVPNRS-------------SANSYFNSFPPGYNN 241
BLAST of Lsi04G014570 vs. TAIR 10
Match:
AT4G26650.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )
HSP 1 Score: 127.5 bits (319), Expect = 1.5e-29
Identity = 75/158 (47.47%), Postives = 91/158 (57.59%), Query Frame = 0
Query: 11 NNDQCRGRKIFVGGLSAELTEDEFKNYFEKFGKITDVVVMHDSVTNRPRGFGFITFDSVE 70
N R +KIFVGGL + +TE EFKNYF++FG I DVVVM+D T RPRGFGFITFDS E
Sbjct: 112 NGGGARTKKIFVGGLPSSITEAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSEE 171
Query: 71 SVDSVLQNNFHELNGRRVEVKRAIPKKGNYNVGHIPNARTQGGKSPLPNRNVPFPYPYYG 130
SVD VL FHELNG+ VEVKRA+PK+ + S PNR+ P YG
Sbjct: 172 SVDMVLHKTFHELNGKMVEVKRAVPKELS---------------STTPNRS---PLIGYG 231
Query: 131 SGYTIYPGFTPFPHYGGPGVDLYGSNFYGNWFPPSFGN 169
+ Y + P + +N Y N FPP + N
Sbjct: 232 NNYGVVPNRS-------------SANSYFNSFPPGYNN 238
BLAST of Lsi04G014570 vs. TAIR 10
Match:
AT5G47620.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )
HSP 1 Score: 124.4 bits (311), Expect = 1.2e-28
Identity = 86/207 (41.55%), Postives = 108/207 (52.17%), Query Frame = 0
Query: 2 NMSNIRMENNNDQCRGRKIFVGGLSAELTEDEFKNYFEKFGKITDVVVMHDSVTNRPRGF 61
N SN ++ + +KIFVGGL++ +TE EFK YF +FG ITDVVVM+D T RPRGF
Sbjct: 90 NKSNSSLQGSPGPSNSKKIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGF 149
Query: 62 GFITFDSVESVDSVLQNNFHELNGRRVEVKRAIPKK---------------GNYNVGHIP 121
GFI++DS E+VD VLQ FHELNG+ VEVK A+PK G + +
Sbjct: 150 GFISYDSEEAVDKVLQKTFHELNGKMVEVKLAVPKDMALNTMRNQMNVNSFGTSRISSLL 209
Query: 122 NARTQG-GKSPLPNRNVPFPYPYYGSGYTIYPGFTPFPHYGGPGVDLYGSNF-------Y 181
N TQG SP+ V P Y GF+PF H G G++L NF Y
Sbjct: 210 NEYTQGFSPSPISGYGVK-PEVRYSPAVGNRGGFSPFGH--GYGIEL---NFEPNQTQNY 269
Query: 182 GNWFPPSFGNMASDGAWYAPNTFGVGM 186
G+ FG S G + FG M
Sbjct: 270 GSGSSGGFGRPFSPGYAASLGRFGSQM 290
BLAST of Lsi04G014570 vs. TAIR 10
Match:
AT5G47620.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )
HSP 1 Score: 124.4 bits (311), Expect = 1.2e-28
Identity = 86/207 (41.55%), Postives = 108/207 (52.17%), Query Frame = 0
Query: 2 NMSNIRMENNNDQCRGRKIFVGGLSAELTEDEFKNYFEKFGKITDVVVMHDSVTNRPRGF 61
N SN ++ + +KIFVGGL++ +TE EFK YF +FG ITDVVVM+D T RPRGF
Sbjct: 90 NKSNSSLQGSPGPSNSKKIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGF 149
Query: 62 GFITFDSVESVDSVLQNNFHELNGRRVEVKRAIPKK---------------GNYNVGHIP 121
GFI++DS E+VD VLQ FHELNG+ VEVK A+PK G + +
Sbjct: 150 GFISYDSEEAVDKVLQKTFHELNGKMVEVKLAVPKDMALNTMRNQMNVNSFGTSRISSLL 209
Query: 122 NARTQG-GKSPLPNRNVPFPYPYYGSGYTIYPGFTPFPHYGGPGVDLYGSNF-------Y 181
N TQG SP+ V P Y GF+PF H G G++L NF Y
Sbjct: 210 NEYTQGFSPSPISGYGVK-PEVRYSPAVGNRGGFSPFGH--GYGIEL---NFEPNQTQNY 269
Query: 182 GNWFPPSFGNMASDGAWYAPNTFGVGM 186
G+ FG S G + FG M
Sbjct: 270 GSGSSGGFGRPFSPGYAASLGRFGSQM 290
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Q9C652 | 4.0e-32 | 51.72 | RNA-binding protein 1 OS=Arabidopsis thaliana OX=3702 GN=RBP1 PE=2 SV=1 | [more] |
Q8W034 | 7.4e-26 | 34.75 | Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana OX=3702 GN=RNP... | [more] |
Q96EP5 | 1.3e-19 | 35.68 | DAZ-associated protein 1 OS=Homo sapiens OX=9606 GN=DAZAP1 PE=1 SV=1 | [more] |
Q98SJ2 | 1.8e-19 | 32.20 | DAZ-associated protein 1 OS=Xenopus laevis OX=8355 GN=dazap1 PE=1 SV=1 | [more] |
Q920Q6 | 1.8e-19 | 41.55 | RNA-binding protein Musashi homolog 2 OS=Mus musculus OX=10090 GN=Msi2 PE=1 SV=1 | [more] |
Match Name | E-value | Identity | Description | |
A0A0A0L563 | 8.3e-97 | 77.87 | RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G644730 PE=4 SV... | [more] |
A0A6J1J2K5 | 9.9e-82 | 68.88 | RNA-binding protein 1-like OS=Cucurbita maxima OX=3661 GN=LOC111481242 PE=4 SV=1 | [more] |
A0A6J1FS87 | 2.2e-81 | 69.57 | RNA-binding protein 1-like OS=Cucurbita moschata OX=3662 GN=LOC111446397 PE=4 SV... | [more] |
A0A6J1C724 | 2.0e-66 | 58.96 | RNA-binding protein 1-like OS=Momordica charantia OX=3673 GN=LOC111008498 PE=4 S... | [more] |
A0A5N6R9D7 | 5.5e-48 | 49.53 | Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_013735 PE=4 SV=1 | [more] |