Lsi04G013900 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi04G013900
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	NAD(P)H-quinone oxidoreductase subunit U, chloroplastic
Location	chr04: 21720928 .. 21722463 (-)
RNA-Seq Expression	Lsi04G013900
Synteny	Lsi04G013900

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GAAAAGTTTTATTGCCCCCATAACGGTATAAGCTCGTAACAATGCAAATATTTTGCGATAGCATTCGTTTGGTGGAAAAACATCTTCTTATCTCTACCAACATCAAACACCGAACTTGAAGAAACAAAAAGCCGCCAACACCAACAATAGAAACCGTCACCGGAGCAGCAACGAAAACCACCATGGCGGCGGCTGCAGTACCGTCTACCACCACCACTACCGTCCACATTCGTCGGAGTAACTTCCTCTCTCCGACTGCAAAAACCCCCGCCATATCTTTCAATCCCATCACTTCCCTCCCAAAGCCGCTCAAGTTCATCACCAGAAACTCCAACGAATCATCGTCGGAGACCGCCACAACTGAGACGGCAACTGAGCTGGAGGCAGAAAGCTCACTCGAAGCCTCCGATGGATCGCCGTCTCTGATTTCGGCTCTCAACGTCGAACGAGCCCTCCGTGGAATTCGTAATGTTATCAACCCTAATCTAATTTCTCAAGTTCGCTTAAATTCCTCTAAAACTTTGTTCTGGTAATGCAGCAATTACAGATGTGAATCACTACGGAAGACTCGGACTCCGAAGAGGATGTCCATATGATCAGGTAATATAATCGAAAAAAAAACCCTAATTCCGCGACAATCATCCTTAATCTTGATCGGCCCTAATTCGTTACAGGTTCCGATTGCATACAACATCAAGGTTGAGGAACTAAAGAGCCAGGGATTAGAGGAAGAAGAACTCAACCAAAAACTTGAACTCCTAAAAGTCAGTAGAAACCAAAAATAAAGCCCTAAACTATATTATGAGATTGGATTGTAAGTAATTTTGAAGAATGGTTACAGGAATCGTACACGATATTATCATCCGTTGAGGAGAGAAGAATGTACGATTGGAGCCTGGCCAGAATCGGAGAACCAGACAAATATTCATGGCCTTTCGAGGCCGATATAACTCAGATTCAAACTCAATTGCCGCCGCCGAAGGTACTCTTCATTTGCCCTCTTTTCCTCCGCAATCTCACGGCAAGGAATTTGTAAAAACATCTCTGATTTTGGACGAAACGATTGCAGGAACCAGAAGACGAAGGACCGACGAGATTGGTGGGTTACTTCTTCTTGGGATGGTTCGTTCTGTCCACGGTGTTATCTATTGCTCTGAATCTCTAGAAACCGCCATTAATGGTGTCTGTAAATTAAGATGAAAGGTTTCCCCTGAAGAAGGACACGAGAACGAAGAGCCCAGCCCGCCAGTTATTTGAAGGAACTCGAAATTTGGGCTCTTTAAAATGGGCCTTTATAAGATTGGGCCTTGTTTAATGTAAGTTTCATTTGTTCTGAGCCCAAGTTTCAAGCCCATAATGTTGTGTCTTATCTATAGCTACCTTTGGAAATTTGTTATATAAATAGTTGTTTCTACTTTCTTGATGAATCCTTGTGTGGGAGATAACTTAATTGTATTTTTAGATAAAAGTATGGAAATTTCGGATTTGTAGCTTCATTTTTACTATACTTGTGAATATAACAATTTTTTTTTCTAT

mRNA sequence

GAAAAGTTTTATTGCCCCCATAACGGTATAAGCTCGTAACAATGCAAATATTTTGCGATAGCATTCGTTTGGTGGAAAAACATCTTCTTATCTCTACCAACATCAAACACCGAACTTGAAGAAACAAAAAGCCGCCAACACCAACAATAGAAACCGTCACCGGAGCAGCAACGAAAACCACCATGGCGGCGGCTGCAGTACCGTCTACCACCACCACTACCGTCCACATTCGTCGGAGTAACTTCCTCTCTCCGACTGCAAAAACCCCCGCCATATCTTTCAATCCCATCACTTCCCTCCCAAAGCCGCTCAAGTTCATCACCAGAAACTCCAACGAATCATCGTCGGAGACCGCCACAACTGAGACGGCAACTGAGCTGGAGGCAGAAAGCTCACTCGAAGCCTCCGATGGATCGCCGTCTCTGATTTCGGCTCTCAACGTCGAACGAGCCCTCCGTGGAATTCCAATTACAGATGTGAATCACTACGGAAGACTCGGACTCCGAAGAGGATGTCCATATGATCAGGTTCCGATTGCATACAACATCAAGGTTGAGGAACTAAAGAGCCAGGGATTAGAGGAAGAAGAACTCAACCAAAAACTTGAACTCCTAAAAGAATCGTACACGATATTATCATCCGTTGAGGAGAGAAGAATGTACGATTGGAGCCTGGCCAGAATCGGAGAACCAGACAAATATTCATGGCCTTTCGAGGCCGATATAACTCAGATTCAAACTCAATTGCCGCCGCCGAAGGAACCAGAAGACGAAGGACCGACGAGATTGGTGGGTTACTTCTTCTTGGGATGGTTCGTTCTGTCCACGGTGTTATCTATTGCTCTGAATCTCTAGAAACCGCCATTAATGGTGTCTGTAAATTAAGATGAAAGGTTTCCCCTGAAGAAGGACACGAGAACGAAGAGCCCAGCCCGCCAGTTATTTGAAGGAACTCGAAATTTGGGCTCTTTAAAATGGGCCTTTATAAGATTGGGCCTTGTTTAATGTAAGTTTCATTTGTTCTGAGCCCAAGTTTCAAGCCCATAATGTTGTGTCTTATCTATAGCTACCTTTGGAAATTTGTTATATAAATAGTTGTTTCTACTTTCTTGATGAATCCTTGTGTGGGAGATAACTTAATTGTATTTTTAGATAAAAGTATGGAAATTTCGGATTTGTAGCTTCATTTTTACTATACTTGTGAATATAACAATTTTTTTTTCTAT

Coding sequence (CDS)

ATGGCGGCGGCTGCAGTACCGTCTACCACCACCACTACCGTCCACATTCGTCGGAGTAACTTCCTCTCTCCGACTGCAAAAACCCCCGCCATATCTTTCAATCCCATCACTTCCCTCCCAAAGCCGCTCAAGTTCATCACCAGAAACTCCAACGAATCATCGTCGGAGACCGCCACAACTGAGACGGCAACTGAGCTGGAGGCAGAAAGCTCACTCGAAGCCTCCGATGGATCGCCGTCTCTGATTTCGGCTCTCAACGTCGAACGAGCCCTCCGTGGAATTCCAATTACAGATGTGAATCACTACGGAAGACTCGGACTCCGAAGAGGATGTCCATATGATCAGGTTCCGATTGCATACAACATCAAGGTTGAGGAACTAAAGAGCCAGGGATTAGAGGAAGAAGAACTCAACCAAAAACTTGAACTCCTAAAAGAATCGTACACGATATTATCATCCGTTGAGGAGAGAAGAATGTACGATTGGAGCCTGGCCAGAATCGGAGAACCAGACAAATATTCATGGCCTTTCGAGGCCGATATAACTCAGATTCAAACTCAATTGCCGCCGCCGAAGGAACCAGAAGACGAAGGACCGACGAGATTGGTGGGTTACTTCTTCTTGGGATGGTTCGTTCTGTCCACGGTGTTATCTATTGCTCTGAATCTCTAG

Protein sequence

MAAAAVPSTTTTTVHIRRSNFLSPTAKTPAISFNPITSLPKPLKFITRNSNESSSETATTETATELEAESSLEASDGSPSLISALNVERALRGIPITDVNHYGRLGLRRGCPYDQVPIAYNIKVEELKSQGLEEEELNQKLELLKESYTILSSVEERRMYDWSLARIGEPDKYSWPFEADITQIQTQLPPPKEPEDEGPTRLVGYFFLGWFVLSTVLSIALNL

Homology

[Close]

BLAST of Lsi04G013900 vs. ExPASy Swiss-Prot
Match: Q84VQ4 (NAD(P)H-quinone oxidoreductase subunit U, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=ndhU PE=1 SV=1)

HSP 1 Score: 208.8 bits (530), Expect = 6.5e-53
Identity = 114/214 (53.27%), Postives = 145/214 (67.76%), Query Frame = 0


Query: 9   TTTTTVHIRRSNFLSPTAKTPAISFNPITSLPKPLKFITRNSNESSSETATTETATELEA 68
           T  + VHI   + L     T +  + P  +  + +    RNS+E S+E A TE  +    
Sbjct: 8   TQPSLVHIPGESVLHHVPSTCSFPWKPTINTKRIICSPARNSSEVSAE-AETEGGSSTAV 67

Query: 69  ESSLEASDGSPSLISALNVERALRGIPITDVNHYGRLGLRRGCPYDQVPIAYNIKVEELK 128
           +   EA   SPSLISALNVERALRG+PITDV+HYGRLG+ R C YDQV I Y  +V+ELK
Sbjct: 68  D---EAPKESPSLISALNVERALRGLPITDVDHYGRLGIFRNCSYDQVTIGYKERVKELK 127

Query: 129 SQGLEEEELNQKLELLKESYTILSSVEERRMYDWSLARIGEPDKYSWPFEADITQIQTQL 188
            QGL+EE+L  K++L+KESYTILS+VEERRMYDWSLAR  + ++Y WPFE DI +   + 
Sbjct: 128 EQGLDEEQLKTKMDLIKESYTILSTVEERRMYDWSLARSEKAERYVWPFEVDIMEPSREE 187

Query: 189 PPPKEPEDEGPTRLVGYFFLGWFVLSTVLSIALN 223
           PPP+EPED GPTR++GYF   W VL   LS+A N
Sbjct: 188 PPPQEPEDVGPTRILGYFIGAWLVLGVALSVAFN 217

[Close]

BLAST of Lsi04G013900 vs. ExPASy TrEMBL
Match: A0A5A7VF89 (NAD(P)H-quinone oxidoreductase subunit U OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold134G001750 PE=4 SV=1)

HSP 1 Score: 392.1 bits (1006), Expect = 1.5e-105
Identity = 206/223 (92.38%), Postives = 211/223 (94.62%), Query Frame = 0


Query: 1   MAAAAVPSTTTTTVHIRRSNFLSPTAKTPAISFNPITSLPKPLKFITRNSNESSSETATT 60
           MAAAAVPS  TTTVHIRRSNF SPT+K  AISFNPITS  KPLKFI RNSNESS+ETATT
Sbjct: 1   MAAAAVPS--TTTVHIRRSNFFSPTSKPTAISFNPITSRSKPLKFIIRNSNESSAETATT 60

Query: 61  ETATELEAESSLEASDGSPSLISALNVERALRGIPITDVNHYGRLGLRRGCPYDQVPIAY 120
           ETATE+E ESSL+ASD SPSLISALNVERALRGIPITDVNHYGRLGLRRGCPYDQVPIAY
Sbjct: 61  ETATEMEEESSLQASDESPSLISALNVERALRGIPITDVNHYGRLGLRRGCPYDQVPIAY 120

Query: 121 NIKVEELKSQGLEEEELNQKLELLKESYTILSSVEERRMYDWSLARIGEPDKYSWPFEAD 180
           NIKV+ELKSQGLEEEELNQKLELLKESY ILSSVEERRMYDWSLARIGEPDKYSWPFEAD
Sbjct: 121 NIKVQELKSQGLEEEELNQKLELLKESYMILSSVEERRMYDWSLARIGEPDKYSWPFEAD 180

Query: 181 ITQIQTQLPPPKEPEDEGPTRLVGYFFLGWFVLSTVLSIALNL 224
           ITQIQTQLPPPKEPEDEGPTRLVGYFFLGWFVLS VLSIALNL
Sbjct: 181 ITQIQTQLPPPKEPEDEGPTRLVGYFFLGWFVLSIVLSIALNL 221

[Close]

BLAST of Lsi04G013900 vs. ExPASy TrEMBL
Match: A0A1S3BUP1 (NAD(P)H-quinone oxidoreductase subunit U, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103493698 PE=4 SV=1)

HSP 1 Score: 392.1 bits (1006), Expect = 1.5e-105
Identity = 206/223 (92.38%), Postives = 211/223 (94.62%), Query Frame = 0


Query: 1   MAAAAVPSTTTTTVHIRRSNFLSPTAKTPAISFNPITSLPKPLKFITRNSNESSSETATT 60
           MAAAAVPS  TTTVHIRRSNF SPT+K  AISFNPITS  KPLKFI RNSNESS+ETATT
Sbjct: 1   MAAAAVPS--TTTVHIRRSNFFSPTSKPTAISFNPITSRSKPLKFIIRNSNESSAETATT 60

Query: 61  ETATELEAESSLEASDGSPSLISALNVERALRGIPITDVNHYGRLGLRRGCPYDQVPIAY 120
           ETATE+E ESSL+ASD SPSLISALNVERALRGIPITDVNHYGRLGLRRGCPYDQVPIAY
Sbjct: 61  ETATEMEEESSLQASDESPSLISALNVERALRGIPITDVNHYGRLGLRRGCPYDQVPIAY 120

Query: 121 NIKVEELKSQGLEEEELNQKLELLKESYTILSSVEERRMYDWSLARIGEPDKYSWPFEAD 180
           NIKV+ELKSQGLEEEELNQKLELLKESY ILSSVEERRMYDWSLARIGEPDKYSWPFEAD
Sbjct: 121 NIKVQELKSQGLEEEELNQKLELLKESYMILSSVEERRMYDWSLARIGEPDKYSWPFEAD 180

Query: 181 ITQIQTQLPPPKEPEDEGPTRLVGYFFLGWFVLSTVLSIALNL 224
           ITQIQTQLPPPKEPEDEGPTRLVGYFFLGWFVLS VLSIALNL
Sbjct: 181 ITQIQTQLPPPKEPEDEGPTRLVGYFFLGWFVLSIVLSIALNL 221

[Close]

BLAST of Lsi04G013900 vs. ExPASy TrEMBL
Match: A0A0A0L072 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G647480 PE=4 SV=1)

HSP 1 Score: 389.4 bits (999), Expect = 9.9e-105
Identity = 207/223 (92.83%), Postives = 209/223 (93.72%), Query Frame = 0


Query: 1   MAAAAVPSTTTTTVHIRRSNFLSPTAKTPAISFNPITSLPKPLKFITRNSNESSSETATT 60
           MAAAAVPS  TTTVHIRRSNFLSPT K   ISFNPITS  KPLKFI RNSNESS+ETATT
Sbjct: 1   MAAAAVPS--TTTVHIRRSNFLSPTTKHTLISFNPITSRSKPLKFIIRNSNESSAETATT 60

Query: 61  ETATELEAESSLEASDGSPSLISALNVERALRGIPITDVNHYGRLGLRRGCPYDQVPIAY 120
           ETATE EAESSL+AS  SPSLISALNVERALRGIPITDVNHYGRLGLRRGCPYDQVPIAY
Sbjct: 61  ETATEPEAESSLQASGESPSLISALNVERALRGIPITDVNHYGRLGLRRGCPYDQVPIAY 120

Query: 121 NIKVEELKSQGLEEEELNQKLELLKESYTILSSVEERRMYDWSLARIGEPDKYSWPFEAD 180
           NIKVEELKSQGLEEEELNQKLELLKESY ILSSVEERRMYDWSLARIGEPDKYSWPFEAD
Sbjct: 121 NIKVEELKSQGLEEEELNQKLELLKESYMILSSVEERRMYDWSLARIGEPDKYSWPFEAD 180

Query: 181 ITQIQTQLPPPKEPEDEGPTRLVGYFFLGWFVLSTVLSIALNL 224
           ITQIQTQLPPPKEPEDEGPTRLVGYFFLGWFVLS VLSIALNL
Sbjct: 181 ITQIQTQLPPPKEPEDEGPTRLVGYFFLGWFVLSIVLSIALNL 221

[Close]

BLAST of Lsi04G013900 vs. ExPASy TrEMBL
Match: A0A6J1DBN8 (NAD(P)H-quinone oxidoreductase subunit U, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111018934 PE=4 SV=1)

HSP 1 Score: 387.5 bits (994), Expect = 3.8e-104
Identity = 200/221 (90.50%), Postives = 206/221 (93.21%), Query Frame = 0


Query: 3   AAAVPSTTTTTVHIRRSNFLSPTAKTPAISFNPITSLPKPLKFITRNSNESSSETATTET 62
           AAAV STT T VHI RSNFLSPT KT AISFNPITSLPKPLKF  RNSN+SS+ETA TET
Sbjct: 2   AAAVSSTTATAVHISRSNFLSPTPKTAAISFNPITSLPKPLKFCIRNSNDSSAETAATET 61

Query: 63  ATELEAESSLEASDGSPSLISALNVERALRGIPITDVNHYGRLGLRRGCPYDQVPIAYNI 122
           ATE E ESS+EA DG+PSLISALNVERALRGIPITDVNHYGRLGLRRGCPYDQVPIAYNI
Sbjct: 62  ATEPEQESSIEAPDGAPSLISALNVERALRGIPITDVNHYGRLGLRRGCPYDQVPIAYNI 121

Query: 123 KVEELKSQGLEEEELNQKLELLKESYTILSSVEERRMYDWSLARIGEPDKYSWPFEADIT 182
           KVEELKSQGLE+EELNQKLELLKESYTILSSVEERRMYDWSLARIGEPDKYSWPFEADIT
Sbjct: 122 KVEELKSQGLEDEELNQKLELLKESYTILSSVEERRMYDWSLARIGEPDKYSWPFEADIT 181

Query: 183 QIQTQLPPPKEPEDEGPTRLVGYFFLGWFVLSTVLSIALNL 224
           QIQTQ+PPPKEPEDEGPTRLVGYF LGWF LS VLSIALNL
Sbjct: 182 QIQTQMPPPKEPEDEGPTRLVGYFILGWFALSVVLSIALNL 222

[Close]

BLAST of Lsi04G013900 vs. ExPASy TrEMBL
Match: A0A6J1FIT6 (NAD(P)H-quinone oxidoreductase subunit U, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111445859 PE=4 SV=1)

HSP 1 Score: 383.3 bits (983), Expect = 7.1e-103
Identity = 201/223 (90.13%), Postives = 212/223 (95.07%), Query Frame = 0


Query: 2   AAAAVPSTTTTT-VHIRRSNFLSPTAKTPAISFNPITSLPKPLKFITRNSNESSSETATT 61
           AAAAVPSTT+TT VHIRRSNFLSPT+KT AI FN ITSLPKPLKF  RNSN+SS+ET TT
Sbjct: 3   AAAAVPSTTSTTAVHIRRSNFLSPTSKTTAIFFNYITSLPKPLKFSVRNSNDSSAETVTT 62

Query: 62  ETATELEAESSLEASDGSPSLISALNVERALRGIPITDVNHYGRLGLRRGCPYDQVPIAY 121
           +TA+E E ESSL+ASDGS SLISALNVERALRGIPITDVNHYGRLGLRRGCPYDQVPIAY
Sbjct: 63  DTASEPEPESSLKASDGSSSLISALNVERALRGIPITDVNHYGRLGLRRGCPYDQVPIAY 122

Query: 122 NIKVEELKSQGLEEEELNQKLELLKESYTILSSVEERRMYDWSLARIGEPDKYSWPFEAD 181
           NIKVEELKSQGLEEEEL+QKLELLKESYTILSSVEERRMYDWSL+RIGEP+KY+WPFEAD
Sbjct: 123 NIKVEELKSQGLEEEELSQKLELLKESYTILSSVEERRMYDWSLSRIGEPEKYTWPFEAD 182

Query: 182 ITQIQTQLPPPKEPEDEGPTRLVGYFFLGWFVLSTVLSIALNL 224
           ITQIQTQLPPPKEPEDEGPTRLVGYFFLGWFVLS VLSIALNL
Sbjct: 183 ITQIQTQLPPPKEPEDEGPTRLVGYFFLGWFVLSVVLSIALNL 225

[Close]

BLAST of Lsi04G013900 vs. NCBI nr
Match: XP_038898705.1 (NAD(P)H-quinone oxidoreductase subunit U, chloroplastic [Benincasa hispida])

HSP 1 Score: 399.8 bits (1026), Expect = 1.5e-107
Identity = 211/224 (94.20%), Postives = 214/224 (95.54%), Query Frame = 0


Query: 1   MAAAAVPS-TTTTTVHIRRSNFLSPTAKTPAISFNPITSLPKPLKFITRNSNESSSETAT 60
           MAAAAVPS TTTTT+HIRRSNFLSPTAKT AISFNPITS PKPLKFI RN NESS+ETAT
Sbjct: 1   MAAAAVPSTTTTTTIHIRRSNFLSPTAKTTAISFNPITSHPKPLKFIIRNYNESSAETAT 60

Query: 61  TETATELEAESSLEASDGSPSLISALNVERALRGIPITDVNHYGRLGLRRGCPYDQVPIA 120
           TET TE EAESSL+ASD SPSLISALNVERALRGIPITDVNHYGRLGLRRGCPYDQVPIA
Sbjct: 61  TETTTEPEAESSLKASDESPSLISALNVERALRGIPITDVNHYGRLGLRRGCPYDQVPIA 120

Query: 121 YNIKVEELKSQGLEEEELNQKLELLKESYTILSSVEERRMYDWSLARIGEPDKYSWPFEA 180
           YNIKVEELKSQGLEEEELNQKLELLKESY ILSSVEERRMYDWSLARIGEPDKYSWPFEA
Sbjct: 121 YNIKVEELKSQGLEEEELNQKLELLKESYMILSSVEERRMYDWSLARIGEPDKYSWPFEA 180

Query: 181 DITQIQTQLPPPKEPEDEGPTRLVGYFFLGWFVLSTVLSIALNL 224
           DITQIQTQLPPPKEPEDEGPTRLVGYFFLGWFVLS VLSIALNL
Sbjct: 181 DITQIQTQLPPPKEPEDEGPTRLVGYFFLGWFVLSAVLSIALNL 224

[Close]

BLAST of Lsi04G013900 vs. NCBI nr
Match: XP_008452780.1 (PREDICTED: NAD(P)H-quinone oxidoreductase subunit U, chloroplastic [Cucumis melo] >KAA0064535.1 NAD(P)H-quinone oxidoreductase subunit U [Cucumis melo var. makuwa] >TYK20055.1 NAD(P)H-quinone oxidoreductase subunit U [Cucumis melo var. makuwa])

HSP 1 Score: 392.1 bits (1006), Expect = 3.2e-105
Identity = 206/223 (92.38%), Postives = 211/223 (94.62%), Query Frame = 0


Query: 1   MAAAAVPSTTTTTVHIRRSNFLSPTAKTPAISFNPITSLPKPLKFITRNSNESSSETATT 60
           MAAAAVPS  TTTVHIRRSNF SPT+K  AISFNPITS  KPLKFI RNSNESS+ETATT
Sbjct: 1   MAAAAVPS--TTTVHIRRSNFFSPTSKPTAISFNPITSRSKPLKFIIRNSNESSAETATT 60

Query: 61  ETATELEAESSLEASDGSPSLISALNVERALRGIPITDVNHYGRLGLRRGCPYDQVPIAY 120
           ETATE+E ESSL+ASD SPSLISALNVERALRGIPITDVNHYGRLGLRRGCPYDQVPIAY
Sbjct: 61  ETATEMEEESSLQASDESPSLISALNVERALRGIPITDVNHYGRLGLRRGCPYDQVPIAY 120

Query: 121 NIKVEELKSQGLEEEELNQKLELLKESYTILSSVEERRMYDWSLARIGEPDKYSWPFEAD 180
           NIKV+ELKSQGLEEEELNQKLELLKESY ILSSVEERRMYDWSLARIGEPDKYSWPFEAD
Sbjct: 121 NIKVQELKSQGLEEEELNQKLELLKESYMILSSVEERRMYDWSLARIGEPDKYSWPFEAD 180

Query: 181 ITQIQTQLPPPKEPEDEGPTRLVGYFFLGWFVLSTVLSIALNL 224
           ITQIQTQLPPPKEPEDEGPTRLVGYFFLGWFVLS VLSIALNL
Sbjct: 181 ITQIQTQLPPPKEPEDEGPTRLVGYFFLGWFVLSIVLSIALNL 221

[Close]

BLAST of Lsi04G013900 vs. NCBI nr
Match: XP_011654197.1 (NAD(P)H-quinone oxidoreductase subunit U, chloroplastic [Cucumis sativus] >KGN55375.1 hypothetical protein Csa_012263 [Cucumis sativus])

HSP 1 Score: 389.4 bits (999), Expect = 2.1e-104
Identity = 207/223 (92.83%), Postives = 209/223 (93.72%), Query Frame = 0


Query: 1   MAAAAVPSTTTTTVHIRRSNFLSPTAKTPAISFNPITSLPKPLKFITRNSNESSSETATT 60
           MAAAAVPS  TTTVHIRRSNFLSPT K   ISFNPITS  KPLKFI RNSNESS+ETATT
Sbjct: 1   MAAAAVPS--TTTVHIRRSNFLSPTTKHTLISFNPITSRSKPLKFIIRNSNESSAETATT 60

Query: 61  ETATELEAESSLEASDGSPSLISALNVERALRGIPITDVNHYGRLGLRRGCPYDQVPIAY 120
           ETATE EAESSL+AS  SPSLISALNVERALRGIPITDVNHYGRLGLRRGCPYDQVPIAY
Sbjct: 61  ETATEPEAESSLQASGESPSLISALNVERALRGIPITDVNHYGRLGLRRGCPYDQVPIAY 120

Query: 121 NIKVEELKSQGLEEEELNQKLELLKESYTILSSVEERRMYDWSLARIGEPDKYSWPFEAD 180
           NIKVEELKSQGLEEEELNQKLELLKESY ILSSVEERRMYDWSLARIGEPDKYSWPFEAD
Sbjct: 121 NIKVEELKSQGLEEEELNQKLELLKESYMILSSVEERRMYDWSLARIGEPDKYSWPFEAD 180

Query: 181 ITQIQTQLPPPKEPEDEGPTRLVGYFFLGWFVLSTVLSIALNL 224
           ITQIQTQLPPPKEPEDEGPTRLVGYFFLGWFVLS VLSIALNL
Sbjct: 181 ITQIQTQLPPPKEPEDEGPTRLVGYFFLGWFVLSIVLSIALNL 221

[Close]

BLAST of Lsi04G013900 vs. NCBI nr
Match: XP_022151248.1 (NAD(P)H-quinone oxidoreductase subunit U, chloroplastic [Momordica charantia])

HSP 1 Score: 387.5 bits (994), Expect = 7.8e-104
Identity = 200/221 (90.50%), Postives = 206/221 (93.21%), Query Frame = 0


Query: 3   AAAVPSTTTTTVHIRRSNFLSPTAKTPAISFNPITSLPKPLKFITRNSNESSSETATTET 62
           AAAV STT T VHI RSNFLSPT KT AISFNPITSLPKPLKF  RNSN+SS+ETA TET
Sbjct: 2   AAAVSSTTATAVHISRSNFLSPTPKTAAISFNPITSLPKPLKFCIRNSNDSSAETAATET 61

Query: 63  ATELEAESSLEASDGSPSLISALNVERALRGIPITDVNHYGRLGLRRGCPYDQVPIAYNI 122
           ATE E ESS+EA DG+PSLISALNVERALRGIPITDVNHYGRLGLRRGCPYDQVPIAYNI
Sbjct: 62  ATEPEQESSIEAPDGAPSLISALNVERALRGIPITDVNHYGRLGLRRGCPYDQVPIAYNI 121

Query: 123 KVEELKSQGLEEEELNQKLELLKESYTILSSVEERRMYDWSLARIGEPDKYSWPFEADIT 182
           KVEELKSQGLE+EELNQKLELLKESYTILSSVEERRMYDWSLARIGEPDKYSWPFEADIT
Sbjct: 122 KVEELKSQGLEDEELNQKLELLKESYTILSSVEERRMYDWSLARIGEPDKYSWPFEADIT 181

Query: 183 QIQTQLPPPKEPEDEGPTRLVGYFFLGWFVLSTVLSIALNL 224
           QIQTQ+PPPKEPEDEGPTRLVGYF LGWF LS VLSIALNL
Sbjct: 182 QIQTQMPPPKEPEDEGPTRLVGYFILGWFALSVVLSIALNL 222

[Close]

BLAST of Lsi04G013900 vs. NCBI nr
Match: XP_023524366.1 (NAD(P)H-quinone oxidoreductase subunit U, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 384.8 bits (987), Expect = 5.1e-103
Identity = 202/223 (90.58%), Postives = 212/223 (95.07%), Query Frame = 0


Query: 2   AAAAVPSTTTTT-VHIRRSNFLSPTAKTPAISFNPITSLPKPLKFITRNSNESSSETATT 61
           AAAAVPSTT+TT VHIRRSNFLSPT+KT AI FN ITSLPKPLKF  RNSN+SS+ET TT
Sbjct: 3   AAAAVPSTTSTTAVHIRRSNFLSPTSKTTAIFFNYITSLPKPLKFSIRNSNDSSAETVTT 62

Query: 62  ETATELEAESSLEASDGSPSLISALNVERALRGIPITDVNHYGRLGLRRGCPYDQVPIAY 121
           +TA+E E ESSL+ASDGS SLISALNVERALRGIPITDVNHYGRLGLRRGCPYDQVPIAY
Sbjct: 63  DTASEPEPESSLKASDGSSSLISALNVERALRGIPITDVNHYGRLGLRRGCPYDQVPIAY 122

Query: 122 NIKVEELKSQGLEEEELNQKLELLKESYTILSSVEERRMYDWSLARIGEPDKYSWPFEAD 181
           NIKVEELKSQGLEEEELNQKLELLKESYTILSSVEERRMYDWSL+RIGEP+KY+WPFEAD
Sbjct: 123 NIKVEELKSQGLEEEELNQKLELLKESYTILSSVEERRMYDWSLSRIGEPEKYTWPFEAD 182

Query: 182 ITQIQTQLPPPKEPEDEGPTRLVGYFFLGWFVLSTVLSIALNL 224
           ITQIQTQLPPPKEPEDEGPTRLVGYFFLGWFVLS VLSIALNL
Sbjct: 183 ITQIQTQLPPPKEPEDEGPTRLVGYFFLGWFVLSVVLSIALNL 225

[Close]

BLAST of Lsi04G013900 vs. TAIR 10
Match: AT5G21430.1 (Chaperone DnaJ-domain superfamily protein )

HSP 1 Score: 208.8 bits (530), Expect = 4.6e-54
Identity = 114/214 (53.27%), Postives = 145/214 (67.76%), Query Frame = 0


Query: 9   TTTTTVHIRRSNFLSPTAKTPAISFNPITSLPKPLKFITRNSNESSSETATTETATELEA 68
           T  + VHI   + L     T +  + P  +  + +    RNS+E S+E A TE  +    
Sbjct: 8   TQPSLVHIPGESVLHHVPSTCSFPWKPTINTKRIICSPARNSSEVSAE-AETEGGSSTAV 67

Query: 69  ESSLEASDGSPSLISALNVERALRGIPITDVNHYGRLGLRRGCPYDQVPIAYNIKVEELK 128
           +   EA   SPSLISALNVERALRG+PITDV+HYGRLG+ R C YDQV I Y  +V+ELK
Sbjct: 68  D---EAPKESPSLISALNVERALRGLPITDVDHYGRLGIFRNCSYDQVTIGYKERVKELK 127

Query: 129 SQGLEEEELNQKLELLKESYTILSSVEERRMYDWSLARIGEPDKYSWPFEADITQIQTQL 188
            QGL+EE+L  K++L+KESYTILS+VEERRMYDWSLAR  + ++Y WPFE DI +   + 
Sbjct: 128 EQGLDEEQLKTKMDLIKESYTILSTVEERRMYDWSLARSEKAERYVWPFEVDIMEPSREE 187

Query: 189 PPPKEPEDEGPTRLVGYFFLGWFVLSTVLSIALN 223
           PPP+EPED GPTR++GYF   W VL   LS+A N
Sbjct: 188 PPPQEPEDVGPTRILGYFIGAWLVLGVALSVAFN 217

[Close]

BLAST of Lsi04G013900 vs. TAIR 10
Match: AT5G21430.2 (Chaperone DnaJ-domain superfamily protein )

HSP 1 Score: 202.6 bits (514), Expect = 3.3e-52
Identity = 113/214 (52.80%), Postives = 144/214 (67.29%), Query Frame = 0


Query: 9   TTTTTVHIRRSNFLSPTAKTPAISFNPITSLPKPLKFITRNSNESSSETATTETATELEA 68
           T  + VHI   + L     T +  + P  +  + +    RNS+E S+E A TE  +    
Sbjct: 8   TQPSLVHIPGESVLHHVPSTCSFPWKPTINTKRIICSPARNSSEVSAE-AETEGGSSTAV 67

Query: 69  ESSLEASDGSPSLISALNVERALRGIPITDVNHYGRLGLRRGCPYDQVPIAYNIKVEELK 128
           +   EA   SPSLISALNVERALRG+PITDV+HYGRLG+ R C YDQV I Y  +V+ELK
Sbjct: 68  D---EAPKESPSLISALNVERALRGLPITDVDHYGRLGIFRNCSYDQVTIGYKERVKELK 127

Query: 129 SQGLEEEELNQKLELLKESYTILSSVEERRMYDWSLARIGEPDKYSWPFEADITQIQTQL 188
            QGL+EE+L  K++L+K SYTILS+VEERRMYDWSLAR  + ++Y WPFE DI +   + 
Sbjct: 128 EQGLDEEQLKTKMDLIK-SYTILSTVEERRMYDWSLARSEKAERYVWPFEVDIMEPSREE 187

Query: 189 PPPKEPEDEGPTRLVGYFFLGWFVLSTVLSIALN 223
           PPP+EPED GPTR++GYF   W VL   LS+A N
Sbjct: 188 PPPQEPEDVGPTRILGYFIGAWLVLGVALSVAFN 216

The following BLAST results are available for this feature:

BLAST of Lsi04G013900 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q84VQ4	6.5e-53	53.27	NAD(P)H-quinone oxidoreductase subunit U, chloroplastic OS=Arabidopsis thaliana ...	[more]

BLAST of Lsi04G013900 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VF89	1.5e-105	92.38	NAD(P)H-quinone oxidoreductase subunit U OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A1S3BUP1	1.5e-105	92.38	NAD(P)H-quinone oxidoreductase subunit U, chloroplastic OS=Cucumis melo OX=3656 ...	[more]
A0A0A0L072	9.9e-105	92.83	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G647480 PE=4 SV=1	[more]
A0A6J1DBN8	3.8e-104	90.50	NAD(P)H-quinone oxidoreductase subunit U, chloroplastic OS=Momordica charantia O...	[more]
A0A6J1FIT6	7.1e-103	90.13	NAD(P)H-quinone oxidoreductase subunit U, chloroplastic OS=Cucurbita moschata OX...	[more]

BLAST of Lsi04G013900 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038898705.1	1.5e-107	94.20	NAD(P)H-quinone oxidoreductase subunit U, chloroplastic [Benincasa hispida]	[more]
XP_008452780.1	3.2e-105	92.38	PREDICTED: NAD(P)H-quinone oxidoreductase subunit U, chloroplastic [Cucumis melo...	[more]
XP_011654197.1	2.1e-104	92.83	NAD(P)H-quinone oxidoreductase subunit U, chloroplastic [Cucumis sativus] >KGN55...	[more]
XP_022151248.1	7.8e-104	90.50	NAD(P)H-quinone oxidoreductase subunit U, chloroplastic [Momordica charantia]	[more]
XP_023524366.1	5.1e-103	90.58	NAD(P)H-quinone oxidoreductase subunit U, chloroplastic [Cucurbita pepo subsp. p...	[more]

BLAST of Lsi04G013900 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G21430.1	4.6e-54	53.27	Chaperone DnaJ-domain superfamily protein	[more]
AT5G21430.2	3.3e-52	52.80	Chaperone DnaJ-domain superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 124..147
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 48..77
IPR036869	Chaperone J-domain superfamily	GENE3D	1.10.287.110	DnaJ domain	coord: 96..172 e-value: 2.4E-5 score: 26.4
IPR036869	Chaperone J-domain superfamily	SUPERFAMILY	46565	Chaperone J-domain	coord: 99..165
IPR044199	NAD(P)H-quinone oxidoreductase subunit U, chloroplastic	PANTHER	PTHR47726	NAD(P)H-QUINONE OXIDOREDUCTASE SUBUNIT U, CHLOROPLASTIC	coord: 1..223

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi04G013900.1	Lsi04G013900.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0010598	NAD(P)H dehydrogenase complex (plastoquinone)