Lsi04G013820 (gene) Bottle gourd (USVL1VR-Ls) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.CCAAAATCCCTCAATTCTTCCATTTATAAAAACCCGTTTCCTCTTCTTTCTTCTGCTTCTTCTTCTCGTCTGTGTTTTTACTTTCCTTCTCTCTCTCTCTCTCTCTCCTTGTTGTCACTGTTCAAATTCAAAGTCGTTATGTCGATTACTTTGGATAGGGTTCGGCAGGTTGAAGATAAACGCTCTGGATTCTCGCCGGAGGATTTGGGTTATGGATCGGTGTTTCAGAGGTTGGTCACTCACGATGTGGATCGCGCTGTTGAAGGGTTTGAAAAGGAGGAGGCTGACGAATCTAATACTTGCAGCTCCGCTTCTACTTCTTCGTCTTCTTCGATCGGGAGGAATAGTGATCAGTCCGCTAGATCGTCGGACGGTGAGGATAGCGGCGAGAATGATGAGGTTCAGAGCTCCTATAAAGGGCCGCTGGATATGATGGACTCCTTGGAGGAGGTTTTGCCTGTCAGGTTGGTGTTCTTTCTATTTGTTTTGTGGATGCTTTGAACTCGTATTTTCTTGCGCGATCTTAGTTTGGTAATTTCGAATTGCAAATCGAAATCATTCCTTGGTTCTAGTTCTTAAAATTCATGGATGATCTGAAACGAGTTTAGGGAAGGCTTGATTAAGCTGGAAAATTTAACACTCTTGTAGTACATTTGATCTAGGGATTGAGGATCGTTAATCTGTCCTGTAGAATGGTGGAGTCATTTGATCTGTGCTTGATTATTGATCAATTACTTTTGCCTCATTTTGGATTTATTACTGGGGGGATTACGTTTACATCCTGGCGGTGACTAGTATTTATTGCTGACAAACAGAGAAAATATTTAGATTCGAGTCTTGGAAGAGTCATTAGTCTGGGCATGAACAAGTCCTGGCCTGTGGAAACATGTTTGCTGATTTCTTGTGGATAAATGCAATGATAAACTCGAGATAACTATATGATTTCGGTGGGTTAATTATGAGAAAGAGAGCATTCCGAAGCTGAAGATTAGTAAATTACATCATTTCTTTAGTGAACTTTAATCGTGAGTTTACCATCGATTTCTATTGTCATCTTTCTTGCCAATCTGTGTAGTGAAGATTGTGTTTCTGAGATCTTTCTAAGCTCAGTCAGAAAGAAATCATTGCTTTGTAGTGCACTAACATTATAAAAATTGTTCTGCAACCACTGCAAGACAATGACTACTTTTGATTTTAGCTTTATGGTTTCAGTAACACTATCTCTACTTTTGAGATTGGAATAAGGGAGAGTACCCATTAAGAGTACCCATTAATACAGTGGAGTTTTTATGCAATTTTACAGCAGAACACACACAAACATACATGATACACGTATTCTATTTGTTTCTTTATCTAATAAATAATTATTACAACATGCAGAAAAGGTATCTCAAAGTTCTATAGTGGAAAATCAAAGTCTTTCACGAGTCTGGCCGATGCTTCCTCTGTTAACTCCATGAAGGAGATTGCAAAGCCAGAGAATGCTTATTCCAAGAAACGTAGGAATCTTATGGCGTACAATCTTGTGTGGGAGAAGAACCGCAGTTTTCCTCTCAAGAATAATGGTGGTGGGATATCAAAGAGACCCATCAGCTCAAGCAGAAGCTCCTTAGCTTTGGCTGTCGCTATGAGCAGCTCCGAAAGTAACAGCAGTGAGGATTCAAATTCTAGCTCATATTCAAGCTCTCCACCGCCTCGCCCACCTCTACACCCACAATCCAGACCATGTAACAGCAATTTCACTTCCATGGTGCCACCTCAAAGAACTTTCTCCACTTGGCGTTCATATTCCTTGGCCGATTTACAAGAATGCGCCACCTTTACTAATAAGGCCAACCTAACCAATCTAAACTAA CCAAAATCCCTCAATTCTTCCATTTATAAAAACCCGTTTCCTCTTCTTTCTTCTGCTTCTTCTTCTCGTCTGTGTTTTTACTTTCCTTCTCTCTCTCTCTCTCTCTCCTTGTTGTCACTGTTCAAATTCAAAGTCGTTATGTCGATTACTTTGGATAGGGTTCGGCAGGTTGAAGATAAACGCTCTGGATTCTCGCCGGAGGATTTGGGTTATGGATCGGTGTTTCAGAGGTTGGTCACTCACGATGTGGATCGCGCTGTTGAAGGGTTTGAAAAGGAGGAGGCTGACGAATCTAATACTTGCAGCTCCGCTTCTACTTCTTCGTCTTCTTCGATCGGGAGGAATAGTGATCAGTCCGCTAGATCGTCGGACGGTGAGGATAGCGGCGAGAATGATGAGGTTCAGAGCTCCTATAAAGGGCCGCTGGATATGATGGACTCCTTGGAGGAGGTTTTGCCTGTCAGAAAAGGTATCTCAAAGTTCTATAGTGGAAAATCAAAGTCTTTCACGAGTCTGGCCGATGCTTCCTCTGTTAACTCCATGAAGGAGATTGCAAAGCCAGAGAATGCTTATTCCAAGAAACGTAGGAATCTTATGGCGTACAATCTTGTGTGGGAGAAGAACCGCAGTTTTCCTCTCAAGAATAATGGTGGTGGGATATCAAAGAGACCCATCAGCTCAAGCAGAAGCTCCTTAGCTTTGGCTGTCGCTATGAGCAGCTCCGAAAGTAACAGCAGTGAGGATTCAAATTCTAGCTCATATTCAAGCTCTCCACCGCCTCGCCCACCTCTACACCCACAATCCAGACCATGTAACAGCAATTTCACTTCCATGGTGCCACCTCAAAGAACTTTCTCCACTTGGCGTTCATATTCCTTGGCCGATTTACAAGAATGCGCCACCTTTACTAATAAGGCCAACCTAACCAATCTAAACTAA ATGTCGATTACTTTGGATAGGGTTCGGCAGGTTGAAGATAAACGCTCTGGATTCTCGCCGGAGGATTTGGGTTATGGATCGGTGTTTCAGAGGTTGGTCACTCACGATGTGGATCGCGCTGTTGAAGGGTTTGAAAAGGAGGAGGCTGACGAATCTAATACTTGCAGCTCCGCTTCTACTTCTTCGTCTTCTTCGATCGGGAGGAATAGTGATCAGTCCGCTAGATCGTCGGACGGTGAGGATAGCGGCGAGAATGATGAGGTTCAGAGCTCCTATAAAGGGCCGCTGGATATGATGGACTCCTTGGAGGAGGTTTTGCCTGTCAGAAAAGGTATCTCAAAGTTCTATAGTGGAAAATCAAAGTCTTTCACGAGTCTGGCCGATGCTTCCTCTGTTAACTCCATGAAGGAGATTGCAAAGCCAGAGAATGCTTATTCCAAGAAACGTAGGAATCTTATGGCGTACAATCTTGTGTGGGAGAAGAACCGCAGTTTTCCTCTCAAGAATAATGGTGGTGGGATATCAAAGAGACCCATCAGCTCAAGCAGAAGCTCCTTAGCTTTGGCTGTCGCTATGAGCAGCTCCGAAAGTAACAGCAGTGAGGATTCAAATTCTAGCTCATATTCAAGCTCTCCACCGCCTCGCCCACCTCTACACCCACAATCCAGACCATGTAACAGCAATTTCACTTCCATGGTGCCACCTCAAAGAACTTTCTCCACTTGGCGTTCATATTCCTTGGCCGATTTACAAGAATGCGCCACCTTTACTAATAAGGCCAACCTAACCAATCTAAACTAA MSITLDRVRQVEDKRSGFSPEDLGYGSVFQRLVTHDVDRAVEGFEKEEADESNTCSSASTSSSSSIGRNSDQSARSSDGEDSGENDEVQSSYKGPLDMMDSLEEVLPVRKGISKFYSGKSKSFTSLADASSVNSMKEIAKPENAYSKKRRNLMAYNLVWEKNRSFPLKNNGGGISKRPISSSRSSLALAVAMSSSESNSSEDSNSSSYSSSPPPRPPLHPQSRPCNSNFTSMVPPQRTFSTWRSYSLADLQECATFTNKANLTNLN Homology
BLAST of Lsi04G013820 vs. ExPASy TrEMBL
Match: A0A0A0L451 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G648530 PE=4 SV=1) HSP 1 Score: 461.8 bits (1187), Expect = 1.9e-126 Identity = 250/266 (93.98%), Postives = 256/266 (96.24%), Query Frame = 0
BLAST of Lsi04G013820 vs. ExPASy TrEMBL
Match: A0A5A7VFR8 (Vitellogenin-2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold134G001690 PE=4 SV=1) HSP 1 Score: 454.9 bits (1169), Expect = 2.3e-124 Identity = 250/267 (93.63%), Postives = 256/267 (95.88%), Query Frame = 0
BLAST of Lsi04G013820 vs. ExPASy TrEMBL
Match: A0A1S3BU42 (vitellogenin-2 OS=Cucumis melo OX=3656 GN=LOC103493705 PE=4 SV=1) HSP 1 Score: 454.9 bits (1169), Expect = 2.3e-124 Identity = 250/267 (93.63%), Postives = 256/267 (95.88%), Query Frame = 0
BLAST of Lsi04G013820 vs. ExPASy TrEMBL
Match: A0A6J1FCW4 (uncharacterized protein LOC111442964 OS=Cucurbita moschata OX=3662 GN=LOC111442964 PE=4 SV=1) HSP 1 Score: 425.6 bits (1093), Expect = 1.5e-115 Identity = 236/266 (88.72%), Postives = 249/266 (93.61%), Query Frame = 0
BLAST of Lsi04G013820 vs. ExPASy TrEMBL
Match: A0A6J1FT55 (uncharacterized protein LOC111446629 OS=Cucurbita moschata OX=3662 GN=LOC111446629 PE=4 SV=1) HSP 1 Score: 421.0 bits (1081), Expect = 3.7e-114 Identity = 237/266 (89.10%), Postives = 246/266 (92.48%), Query Frame = 0
BLAST of Lsi04G013820 vs. NCBI nr
Match: XP_038896868.1 (uncharacterized protein LOC120085087 [Benincasa hispida]) HSP 1 Score: 472.6 bits (1215), Expect = 2.2e-129 Identity = 256/266 (96.24%), Postives = 258/266 (96.99%), Query Frame = 0
BLAST of Lsi04G013820 vs. NCBI nr
Match: XP_004141345.1 (vitellogenin-2 [Cucumis sativus] >KGN55382.1 hypothetical protein Csa_012692 [Cucumis sativus]) HSP 1 Score: 461.8 bits (1187), Expect = 3.9e-126 Identity = 250/266 (93.98%), Postives = 256/266 (96.24%), Query Frame = 0
BLAST of Lsi04G013820 vs. NCBI nr
Match: XP_008452790.1 (PREDICTED: vitellogenin-2 [Cucumis melo] >KAA0064541.1 vitellogenin-2 [Cucumis melo var. makuwa] >TYK20049.1 vitellogenin-2 [Cucumis melo var. makuwa]) HSP 1 Score: 454.9 bits (1169), Expect = 4.7e-124 Identity = 250/267 (93.63%), Postives = 256/267 (95.88%), Query Frame = 0
BLAST of Lsi04G013820 vs. NCBI nr
Match: XP_022936302.1 (uncharacterized protein LOC111442964 [Cucurbita moschata] >XP_022936303.1 uncharacterized protein LOC111442964 [Cucurbita moschata]) HSP 1 Score: 425.6 bits (1093), Expect = 3.1e-115 Identity = 236/266 (88.72%), Postives = 249/266 (93.61%), Query Frame = 0
BLAST of Lsi04G013820 vs. NCBI nr
Match: XP_022941285.1 (uncharacterized protein LOC111446629 [Cucurbita moschata]) HSP 1 Score: 421.0 bits (1081), Expect = 7.6e-114 Identity = 237/266 (89.10%), Postives = 246/266 (92.48%), Query Frame = 0
BLAST of Lsi04G013820 vs. TAIR 10
Match: AT5G21940.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G43850.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). ) HSP 1 Score: 151.0 bits (380), Expect = 1.4e-36 Identity = 116/229 (50.66%), Postives = 155/229 (67.69%), Query Frame = 0
BLAST of Lsi04G013820 vs. TAIR 10
Match: AT3G43850.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: vacuole; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G21940.1); Has 215 Blast hits to 215 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 213; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). ) HSP 1 Score: 102.4 bits (254), Expect = 5.6e-22 Identity = 71/157 (45.22%), Postives = 98/157 (62.42%), Query Frame = 0
BLAST of Lsi04G013820 vs. TAIR 10
Match: AT5G24890.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G24550.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). ) HSP 1 Score: 59.3 bits (142), Expect = 5.4e-09 Identity = 46/116 (39.66%), Postives = 64/116 (55.17%), Query Frame = 0
BLAST of Lsi04G013820 vs. TAIR 10
Match: AT2G24550.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G31510.1); Has 219 Blast hits to 219 proteins in 33 species: Archae - 0; Bacteria - 0; Metazoa - 16; Fungi - 2; Plants - 184; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink). ) HSP 1 Score: 57.8 bits (138), Expect = 1.6e-08 Identity = 46/122 (37.70%), Postives = 71/122 (58.20%), Query Frame = 0
BLAST of Lsi04G013820 vs. TAIR 10
Match: AT5G56550.1 (oxidative stress 3 ) HSP 1 Score: 46.2 bits (108), Expect = 4.7e-05 Identity = 47/145 (32.41%), Postives = 75/145 (51.72%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
Relationships
The following mRNA feature(s) are a part of this gene:
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