Lsi04G012670 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi04G012670
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
DescriptionB box-type domain-containing protein
Locationchr04: 20001468 .. 20002891 (+)
RNA-Seq ExpressionLsi04G012670
SyntenyLsi04G012670
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATTAAGGGTAGTTCCCCTAATATAAGGAAATTGTACTTTCCCCTTCCGCTCCTTTTATTCTTCGGCATTTCTTTCGGAATGAACAGATAAAAGGGGAAAGGAAGAAGAAGAAGGAGAAGAAAAAATCAGCGGCTGAAAAATCAAGAGGGTTACAAGAAGAAGAAGAAGAACAACAAGACTGAATTTGAGATTTCGAAGAAGAAATGAAGAAGTGCGAGCTGTGTGGACAGCAAGCGAGGATGTTCTGCGAGTCGGATCAGGCGAACCTGTGTTGGGACTGCGATGAGAAGGTTCACTGTGCAAATTTTCTTGTTGCTAAACATTCTCGGAGCCTTCTTTGTCACGTATGTCAGTCGCTGACTCCATGGGCGGCCTCTGGTCGGAAGCTTACGCCGACGGTTTCTGTGTGCGAGGGATGTGTCGAAGTCCATGGTGGTAAATGTGAGCAAGGTGGATTTCAAGAGCGGTGTAGAGATAACGAGGAGGAAGTTGATGGTGGTGGTGATTTTGACGATGGTGAAGGTTTCGATAGTTATGAGGGAGGTGATAGTGAGGAAGACGATGATGGGGATGAAGATGAGGACGAGGAAGACGAGGAGGAAGAAGAGGAAGAGGACGGAGAAAACCAGGTGGTGCCCTGGTCTTATGCATCTTCTTCGTCGCCACCACCGCCTCCGACAGTGACTTCTAGCAGCGAGGGCGAGATTTCAGCCGGCGCTGGTGTCGCATCGAAGCGGATGAGAGAATACGGCGTCGATCTCGATTCCGATGTATGTATTTTTTAGGTCTTGTTTTCTTTCTATTTCCTTTTCTTCTGTGTTTTCATTTTCCTTAGTCTGTGCTGAAGAAAATCGCTTGCGATTTCGAAATCTTTTGTTCATTCATTAGCTTTTCTGGAATCGGTGTTTTGATAAAATCATATCGTTTTTTCTCATACAACATAAATCAATGGTTTTCAGTTTTACAAGTTAATCCGACTCAAGATTTGAACCGAATCGTTCTGTTTTATATCCCTTTTAGCCTTTGATTTTGGTAAGAATCGCATTAATTTGCCGATCTGAAACATAATCATCATTTTCCTAGTTATTAATTTTCCAGTTATCCAAACAGGGCTTTAGTAATCGTTTTCCACTTGAATGCAGGATGAAATCGAGTGTTCTTCTGCACCACCGAGTACAAGGCCGTTTTTCAATGACGAAGCGACATCCTCGAGTTCCCTTAGGCCACGGAAGCAAGCAAGAGTTACAGGACCAACCCAATCAGCCACATCCACTCCGGATGATGAAGGTTGTAAAACCGAGTTAAAATCCACGGCTGTCGTTAGATCTATCCAGAGACTCCAGAATCAGCTTCCCACCGACAGTAACGATGCTTCCAAAATGATCTTTGGGATATGCAAAATGAGCAGAGATCAGAATCGTTGA

mRNA sequence

ATTAAGGGTAGTTCCCCTAATATAAGGAAATTGTACTTTCCCCTTCCGCTCCTTTTATTCTTCGGCATTTCTTTCGGAATGAACAGATAAAAGGGGAAAGGAAGAAGAAGAAGGAGAAGAAAAAATCAGCGGCTGAAAAATCAAGAGGGTTACAAGAAGAAGAAGAAGAACAACAAGACTGAATTTGAGATTTCGAAGAAGAAATGAAGAAGTGCGAGCTGTGTGGACAGCAAGCGAGGATGTTCTGCGAGTCGGATCAGGCGAACCTGTGTTGGGACTGCGATGAGAAGGTTCACTGTGCAAATTTTCTTGTTGCTAAACATTCTCGGAGCCTTCTTTGTCACGTATGTCAGTCGCTGACTCCATGGGCGGCCTCTGGTCGGAAGCTTACGCCGACGGTTTCTGTGTGCGAGGGATGTGTCGAAGTCCATGGTGGTAAATGTGAGCAAGGTGGATTTCAAGAGCGGTGTAGAGATAACGAGGAGGAAGTTGATGGTGGTGGTGATTTTGACGATGGTGAAGGTTTCGATAGTTATGAGGGAGGTGATAGTGAGGAAGACGATGATGGGGATGAAGATGAGGACGAGGAAGACGAGGAGGAAGAAGAGGAAGAGGACGGAGAAAACCAGGTGGTGCCCTGGTCTTATGCATCTTCTTCGTCGCCACCACCGCCTCCGACAGTGACTTCTAGCAGCGAGGGCGAGATTTCAGCCGGCGCTGGTGTCGCATCGAAGCGGATGAGAGAATACGGCGTCGATCTCGATTCCGATGATGAAATCGAGTGTTCTTCTGCACCACCGAGTACAAGGCCGTTTTTCAATGACGAAGCGACATCCTCGAGTTCCCTTAGGCCACGGAAGCAAGCAAGAGTTACAGGACCAACCCAATCAGCCACATCCACTCCGGATGATGAAGGTTGTAAAACCGAGTTAAAATCCACGGCTGTCGTTAGATCTATCCAGAGACTCCAGAATCAGCTTCCCACCGACAGTAACGATGCTTCCAAAATGATCTTTGGGATATGCAAAATGAGCAGAGATCAGAATCGTTGA

Coding sequence (CDS)

ATGAAGAAGTGCGAGCTGTGTGGACAGCAAGCGAGGATGTTCTGCGAGTCGGATCAGGCGAACCTGTGTTGGGACTGCGATGAGAAGGTTCACTGTGCAAATTTTCTTGTTGCTAAACATTCTCGGAGCCTTCTTTGTCACGTATGTCAGTCGCTGACTCCATGGGCGGCCTCTGGTCGGAAGCTTACGCCGACGGTTTCTGTGTGCGAGGGATGTGTCGAAGTCCATGGTGGTAAATGTGAGCAAGGTGGATTTCAAGAGCGGTGTAGAGATAACGAGGAGGAAGTTGATGGTGGTGGTGATTTTGACGATGGTGAAGGTTTCGATAGTTATGAGGGAGGTGATAGTGAGGAAGACGATGATGGGGATGAAGATGAGGACGAGGAAGACGAGGAGGAAGAAGAGGAAGAGGACGGAGAAAACCAGGTGGTGCCCTGGTCTTATGCATCTTCTTCGTCGCCACCACCGCCTCCGACAGTGACTTCTAGCAGCGAGGGCGAGATTTCAGCCGGCGCTGGTGTCGCATCGAAGCGGATGAGAGAATACGGCGTCGATCTCGATTCCGATGATGAAATCGAGTGTTCTTCTGCACCACCGAGTACAAGGCCGTTTTTCAATGACGAAGCGACATCCTCGAGTTCCCTTAGGCCACGGAAGCAAGCAAGAGTTACAGGACCAACCCAATCAGCCACATCCACTCCGGATGATGAAGGTTGTAAAACCGAGTTAAAATCCACGGCTGTCGTTAGATCTATCCAGAGACTCCAGAATCAGCTTCCCACCGACAGTAACGATGCTTCCAAAATGATCTTTGGGATATGCAAAATGAGCAGAGATCAGAATCGTTGA

Protein sequence

MKKCELCGQQARMFCESDQANLCWDCDEKVHCANFLVAKHSRSLLCHVCQSLTPWAASGRKLTPTVSVCEGCVEVHGGKCEQGGFQERCRDNEEEVDGGGDFDDGEGFDSYEGGDSEEDDDGDEDEDEEDEEEEEEEDGENQVVPWSYASSSSPPPPPTVTSSSEGEISAGAGVASKRMREYGVDLDSDDEIECSSAPPSTRPFFNDEATSSSSLRPRKQARVTGPTQSATSTPDDEGCKTELKSTAVVRSIQRLQNQLPTDSNDASKMIFGICKMSRDQNR
Homology
BLAST of Lsi04G012670 vs. ExPASy Swiss-Prot
Match: Q9LJB7 (B-box zinc finger protein 32 OS=Arabidopsis thaliana OX=3702 GN=BBX32 PE=1 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 1.1e-09
Identity = 34/78 (43.59%), Postives = 43/78 (55.13%), Query Frame = 0

Query: 4  CELCGQQARMFCESDQANLCWDCDEKVHCANFLVAKHSRSLLCHVCQSLTPWAASGRKLT 63
          CELCG +A + C +D A LC  CD K H +NFL A+H R ++C  C+SLT    SG  L 
Sbjct: 5  CELCGAEADLHCAADSAFLCRSCDAKFHASNFLFARHFRRVICPNCKSLTQNFVSGPLLP 64

Query: 64 -PTVSVCEGCVEVHGGKC 81
           P  + C  C E     C
Sbjct: 65 WPPRTTC--CSESSSSSC 80

BLAST of Lsi04G012670 vs. ExPASy Swiss-Prot
Match: O23379 (Putative zinc finger protein CONSTANS-LIKE 11 OS=Arabidopsis thaliana OX=3702 GN=COL11 PE=1 SV=2)

HSP 1 Score: 65.5 bits (158), Expect = 1.1e-09
Identity = 33/71 (46.48%), Postives = 46/71 (64.79%), Query Frame = 0

Query: 3  KCELCG-QQARMFCESDQANLCWDCDEKVHCANFLVAKHSRSLLCHVCQSLTPWAASGRK 62
          +C+ CG ++A ++C+SD A LC +CD  VH AN L  +H+RSLLC  C SL P A     
Sbjct: 4  RCDFCGTEKALIYCKSDSAKLCLNCDVNVHSANPLSQRHTRSLLCEKC-SLQPTAV--HC 63

Query: 63 LTPTVSVCEGC 73
          +   VS+C+GC
Sbjct: 64 MNENVSLCQGC 71

BLAST of Lsi04G012670 vs. ExPASy Swiss-Prot
Match: Q1G3I2 (B-box domain protein 30 OS=Arabidopsis thaliana OX=3702 GN=MIP1A PE=1 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 4.3e-09
Identity = 26/50 (52.00%), Postives = 34/50 (68.00%), Query Frame = 0

Query: 4  CELCGQQARMFCESDQANLCWDCDEKVHCANFLVAKHSRSLLCHVCQSLT 54
          CELCG+ A ++CE+D A LC  CD  VH ANFL  +H R ++C  C+ LT
Sbjct: 32 CELCGENATVYCEADAAFLCRKCDRWVHSANFLARRHLRRVICTTCRKLT 81

BLAST of Lsi04G012670 vs. ExPASy Swiss-Prot
Match: Q9LRM4 (B-box domain protein 31 OS=Arabidopsis thaliana OX=3702 GN=MIP1B PE=2 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 1.6e-08
Identity = 28/51 (54.90%), Postives = 33/51 (64.71%), Query Frame = 0

Query: 3  KCELCGQQARMFCESDQANLCWDCDEKVHCANFLVAKHSRSLLCHVCQSLT 54
          +CELC   A +FCE+D A LC  CD  VH ANFL  +H R +LC  CQ LT
Sbjct: 30 RCELCDGDASVFCEADSAFLCRKCDRWVHGANFLAWRHVRRVLCTSCQKLT 80

BLAST of Lsi04G012670 vs. ExPASy Swiss-Prot
Match: Q9LUA9 (Zinc finger protein CONSTANS-LIKE 10 OS=Arabidopsis thaliana OX=3702 GN=COL10 PE=1 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 2.8e-08
Identity = 31/70 (44.29%), Postives = 40/70 (57.14%), Query Frame = 0

Query: 4  CELCGQQARM-FCESDQANLCWDCDEKVHCANFLVAKHSRSLLCHVCQSLTPWAASGRKL 63
          C+ CG+Q  M +C SD A LC  CD  VH AN L  +HSR+L+C  C +     AS R  
Sbjct: 5  CDFCGEQRSMVYCRSDAACLCLSCDRNVHSANALSKRHSRTLVCERCNA---QPASVRCS 64

Query: 64 TPTVSVCEGC 73
             VS+C+ C
Sbjct: 65 DERVSLCQNC 71

BLAST of Lsi04G012670 vs. ExPASy TrEMBL
Match: A0A5D3B734 (Zinc finger protein CONSTANS-LIKE 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold110G00930 PE=4 SV=1)

HSP 1 Score: 464.5 bits (1194), Expect = 3.1e-127
Identity = 248/282 (87.94%), Postives = 256/282 (90.78%), Query Frame = 0

Query: 1   MKKCELCGQQARMFCESDQANLCWDCDEKVHCANFLVAKHSRSLLCHVCQSLTPWAASGR 60
           MKKCELCG QARMFCESDQANLCWDCDEKVHCANFLVAKHSRSLLCHVCQS TPWAASGR
Sbjct: 1   MKKCELCGHQARMFCESDQANLCWDCDEKVHCANFLVAKHSRSLLCHVCQSPTPWAASGR 60

Query: 61  KLTPTVSVCEGCVEVHGGKCEQGGFQERCRDNEEEVDGGGDFDDGEGFDSYEGGDSEEDD 120
           KLTPTVSVCEGCVEVH GKCE    Q+R RDNE EVD G DF DGEGFDSYEGGDS+EDD
Sbjct: 61  KLTPTVSVCEGCVEVHDGKCE----QDRRRDNEVEVDDGDDFVDGEGFDSYEGGDSQEDD 120

Query: 121 DGDEDEDEEDEEEEEEEDGENQVVPWSYASSSSPPPPPTVTSSSEGEISAGAGVASKRMR 180
           DG++D    D+EEE++EDGENQVVPWSYASSSSPPPPPTVTSSSEGEISAGAGVASKRMR
Sbjct: 121 DGEDD----DDEEEDDEDGENQVVPWSYASSSSPPPPPTVTSSSEGEISAGAGVASKRMR 180

Query: 181 EYGVDLDSDDEIECSSAPPSTRPFFNDEATSSSSLRPRKQARVTGPTQSATSTPDDEGCK 240
           EYGVDLDSDDEIE  SAP STRPFFNDEATSSSSLRP KQARV GP QS TSTPDDE CK
Sbjct: 181 EYGVDLDSDDEIESCSAPQSTRPFFNDEATSSSSLRPLKQARVAGPIQSTTSTPDDEACK 240

Query: 241 TELKSTAVVRSIQRLQNQLPTDSNDASKMIFGICKMSRDQNR 283
            ELKSTAVVRSIQRLQN+LPTD NDASKMIFGICKMSRDQNR
Sbjct: 241 AELKSTAVVRSIQRLQNRLPTDINDASKMIFGICKMSRDQNR 274

BLAST of Lsi04G012670 vs. ExPASy TrEMBL
Match: A0A1S3BZT7 (zinc finger protein CONSTANS-LIKE 4 OS=Cucumis melo OX=3656 GN=LOC103494983 PE=4 SV=1)

HSP 1 Score: 464.5 bits (1194), Expect = 3.1e-127
Identity = 248/282 (87.94%), Postives = 256/282 (90.78%), Query Frame = 0

Query: 1   MKKCELCGQQARMFCESDQANLCWDCDEKVHCANFLVAKHSRSLLCHVCQSLTPWAASGR 60
           MKKCELCG QARMFCESDQANLCWDCDEKVHCANFLVAKHSRSLLCHVCQS TPWAASGR
Sbjct: 1   MKKCELCGHQARMFCESDQANLCWDCDEKVHCANFLVAKHSRSLLCHVCQSPTPWAASGR 60

Query: 61  KLTPTVSVCEGCVEVHGGKCEQGGFQERCRDNEEEVDGGGDFDDGEGFDSYEGGDSEEDD 120
           KLTPTVSVCEGCVEVH GKCE    Q+R RDNE EVD G DF DGEGFDSYEGGDS+EDD
Sbjct: 61  KLTPTVSVCEGCVEVHDGKCE----QDRRRDNEVEVDDGDDFVDGEGFDSYEGGDSQEDD 120

Query: 121 DGDEDEDEEDEEEEEEEDGENQVVPWSYASSSSPPPPPTVTSSSEGEISAGAGVASKRMR 180
           DG++D    D+EEE++EDGENQVVPWSYASSSSPPPPPTVTSSSEGEISAGAGVASKRMR
Sbjct: 121 DGEDD----DDEEEDDEDGENQVVPWSYASSSSPPPPPTVTSSSEGEISAGAGVASKRMR 180

Query: 181 EYGVDLDSDDEIECSSAPPSTRPFFNDEATSSSSLRPRKQARVTGPTQSATSTPDDEGCK 240
           EYGVDLDSDDEIE  SAP STRPFFNDEATSSSSLRP KQARV GP QS TSTPDDE CK
Sbjct: 181 EYGVDLDSDDEIESCSAPQSTRPFFNDEATSSSSLRPLKQARVAGPIQSTTSTPDDEACK 240

Query: 241 TELKSTAVVRSIQRLQNQLPTDSNDASKMIFGICKMSRDQNR 283
            ELKSTAVVRSIQRLQN+LPTD NDASKMIFGICKMSRDQNR
Sbjct: 241 AELKSTAVVRSIQRLQNRLPTDINDASKMIFGICKMSRDQNR 274

BLAST of Lsi04G012670 vs. ExPASy TrEMBL
Match: A0A0A0LCX6 (B box-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G850640 PE=4 SV=1)

HSP 1 Score: 461.1 bits (1185), Expect = 3.4e-126
Identity = 247/282 (87.59%), Postives = 256/282 (90.78%), Query Frame = 0

Query: 1   MKKCELCGQQARMFCESDQANLCWDCDEKVHCANFLVAKHSRSLLCHVCQSLTPWAASGR 60
           M KCELCG QARMFCESDQANLCWDCDEKVHCANFLVAKHSR+LLCHVCQS TPWAASGR
Sbjct: 1   MIKCELCGHQARMFCESDQANLCWDCDEKVHCANFLVAKHSRTLLCHVCQSPTPWAASGR 60

Query: 61  KLTPTVSVCEGCVEVHGGKCEQGGFQERCRDNEEEVDGGGDFDDGEGFDSYEGGDSEEDD 120
           KLTPTVSVCEGCV+VH GKC+    QER R+NE EVD G DF D EGFDSYEGGDSEEDD
Sbjct: 61  KLTPTVSVCEGCVQVHDGKCD----QERRRENEVEVDDGDDFVDDEGFDSYEGGDSEEDD 120

Query: 121 DGDEDEDEEDEEEEEEEDGENQVVPWSYASSSSPPPPPTVTSSSEGEISAGAGVASKRMR 180
           DG+ED    D+EEE++EDGENQVVPWSYASSSSPPPPPTVTSSSEGEISAGAGVASKRMR
Sbjct: 121 DGEED----DDEEEDDEDGENQVVPWSYASSSSPPPPPTVTSSSEGEISAGAGVASKRMR 180

Query: 181 EYGVDLDSDDEIECSSAPPSTRPFFNDEATSSSSLRPRKQARVTGPTQSATSTPDDEGCK 240
           EYGVDLDSDDEIE  SAP STRPFFNDEATSSSSLRP KQARVTGPTQS TSTPDDE CK
Sbjct: 181 EYGVDLDSDDEIESCSAPQSTRPFFNDEATSSSSLRPLKQARVTGPTQSITSTPDDEACK 240

Query: 241 TELKSTAVVRSIQRLQNQLPTDSNDASKMIFGICKMSRDQNR 283
            ELKSTAVVRSIQRLQN+LPTD NDASKMIFGICKMSRDQNR
Sbjct: 241 AELKSTAVVRSIQRLQNRLPTDINDASKMIFGICKMSRDQNR 274

BLAST of Lsi04G012670 vs. ExPASy TrEMBL
Match: A0A6J1CD44 (protein BFR2 OS=Momordica charantia OX=3673 GN=LOC111010576 PE=4 SV=1)

HSP 1 Score: 457.2 bits (1175), Expect = 4.9e-125
Identity = 239/282 (84.75%), Postives = 259/282 (91.84%), Query Frame = 0

Query: 1   MKKCELCGQQARMFCESDQANLCWDCDEKVHCANFLVAKHSRSLLCHVCQSLTPWAASGR 60
           MKKCELCGQQARMFCESDQANLCWDCDEKVHCANFLVAKHSRSLLCHVCQS TPW ASGR
Sbjct: 1   MKKCELCGQQARMFCESDQANLCWDCDEKVHCANFLVAKHSRSLLCHVCQSPTPWTASGR 60

Query: 61  KLTPTVSVCEGCVEVHGGKCEQGGFQERCRDNEEEVDGGGDFDDGEGFDSYEGGDSEEDD 120
           KLTPTVSVCEGCVEVHGGKCEQG +QER RDNE+ VD G D +DGEGF+SYEGGDSEEDD
Sbjct: 61  KLTPTVSVCEGCVEVHGGKCEQGAYQERRRDNEDVVDDGDDLEDGEGFESYEGGDSEEDD 120

Query: 121 DGDEDEDEEDEEEEEEEDGENQVVPWSYASSSSPPPPPTVTSSSEGEISAGAGVASKRMR 180
           + +E+E+EE+ EEEE+EDGENQVVPWSYAS SSPPPPPTVTSSSEGE+SAGAGV SKRMR
Sbjct: 121 EEEEEEEEEEGEEEEDEDGENQVVPWSYASYSSPPPPPTVTSSSEGEVSAGAGVTSKRMR 180

Query: 181 EYGVDLDSDDEIECSSAPPSTRPFFNDEATSSSSLRPRKQARVTGPTQSATSTPDDEGCK 240
           +YGVDLDSDDEIE SSA   TRPFFNDEATSSSSLRP KQARVTG +QSA++ PDD  CK
Sbjct: 181 DYGVDLDSDDEIESSSARQGTRPFFNDEATSSSSLRPLKQARVTGRSQSASTIPDDAACK 240

Query: 241 TELKSTAVVRSIQRLQNQLPTDSNDASKMIFGICKMSRDQNR 283
            EL+STAVVRSIQRLQ++LP+D NDASK+IFGICKMSRDQNR
Sbjct: 241 PELESTAVVRSIQRLQSRLPSDINDASKVIFGICKMSRDQNR 282

BLAST of Lsi04G012670 vs. ExPASy TrEMBL
Match: A0A6J1F7H6 (protein BFR2 OS=Cucurbita moschata OX=3662 GN=LOC111443061 PE=4 SV=1)

HSP 1 Score: 448.4 bits (1152), Expect = 2.3e-122
Identity = 238/283 (84.10%), Postives = 256/283 (90.46%), Query Frame = 0

Query: 1   MKKCELCGQQARMFCESDQANLCWDCDEKVHCANFLVAKHSRSLLCHVCQSLTPWAASGR 60
           MKKCELCGQQARMFCESDQANLCWDCDE VHCANFLVAKHSRSLLCH CQS TPWAASGR
Sbjct: 1   MKKCELCGQQARMFCESDQANLCWDCDENVHCANFLVAKHSRSLLCHACQSPTPWAASGR 60

Query: 61  KLTPTVSVCEGCVEVHGGKCEQGGFQERCRDNEEEVDGGGDFDDGEGFDSYEGGDSEEDD 120
           KLTPTVSVCEGCVEVHGGKCE+G + ER RDNEEEVD G DFDDGEGF+SYEGGDSEED+
Sbjct: 61  KLTPTVSVCEGCVEVHGGKCEEGRYLERRRDNEEEVDDGDDFDDGEGFESYEGGDSEEDE 120

Query: 121 DGDEDEDEEDEEEEEEEDGENQVVPWSYASSSSPPPPPTVTSSSEGEISAGAGVASKRMR 180
           D D+DE+EE+EEEE++EDGENQVVPWS ASSSSPPPPPTVTSSSEGEIS GAGV SKRMR
Sbjct: 121 DDDDDEEEEEEEEEDDEDGENQVVPWSCASSSSPPPPPTVTSSSEGEISTGAGVTSKRMR 180

Query: 181 EYGVDLDSDDEIECSSAPPSTRPFFNDEATSSSSLRPRKQARVTGPTQS-ATSTPDDEGC 240
           E  VDL+SDD+IECSSA   TRPFFN+EATSSSS RP KQARVTGPTQS +T+T DDE  
Sbjct: 181 ECDVDLESDDDIECSSARQGTRPFFNEEATSSSSHRPLKQARVTGPTQSPSTTTADDEAY 240

Query: 241 KTELKSTAVVRSIQRLQNQLPTDSNDASKMIFGICKMSRDQNR 283
           K +LKS +VVRSIQ+LQN+ PTD NDASKMIFGICKMSRDQNR
Sbjct: 241 KADLKSISVVRSIQKLQNRPPTDINDASKMIFGICKMSRDQNR 283

BLAST of Lsi04G012670 vs. NCBI nr
Match: XP_038899463.1 (nucleolin [Benincasa hispida])

HSP 1 Score: 481.9 bits (1239), Expect = 3.8e-132
Identity = 256/284 (90.14%), Postives = 264/284 (92.96%), Query Frame = 0

Query: 1   MKKCELCGQQARMFCESDQANLCWDCDEKVHCANFLVAKHSRSLLCHVCQSLTPWAASGR 60
           MKKCELCGQQARMFCESDQANLCWDCDEKVHCANFLVAKHSRSLLCHVCQS TPWAASGR
Sbjct: 1   MKKCELCGQQARMFCESDQANLCWDCDEKVHCANFLVAKHSRSLLCHVCQSPTPWAASGR 60

Query: 61  KLTPTVSVCEGCVEVHGGKCEQGGFQERCRDNEEEVDGGGDFDDGEGFDSYEGGDSEEDD 120
           KLTPTVSVCEGCVEVHGGKCE+G +QER RDNEEEVD G  F DGEGFDSYEGGDSEEDD
Sbjct: 61  KLTPTVSVCEGCVEVHGGKCERGVYQERRRDNEEEVDEGDGFVDGEGFDSYEGGDSEEDD 120

Query: 121 DG--DEDEDEEDEEEEEEEDGENQVVPWSYASSSSPPPPPTVTSSSEGEISAGAGVASKR 180
           DG  DEDEDEEDEEEEE+EDGENQVVPWSYASSSS PPPP  TSSSEGEISA AGVASKR
Sbjct: 121 DGDDDEDEDEEDEEEEEDEDGENQVVPWSYASSSSLPPPPAATSSSEGEISAAAGVASKR 180

Query: 181 MREYGVDLDSDDEIECSSAPPSTRPFFNDEATSSSSLRPRKQARVTGPTQSATSTPDDEG 240
           MREYGVDLDS+DEIECSSAP  TRPFFNDEATSSSSLRP KQARVTGPTQSATS PDDE 
Sbjct: 181 MREYGVDLDSEDEIECSSAPQGTRPFFNDEATSSSSLRPLKQARVTGPTQSATSNPDDEA 240

Query: 241 CKTELKSTAVVRSIQRLQNQLPTDSNDASKMIFGICKMSRDQNR 283
           CK ++KSTAVVRSIQRLQN+LPT+ NDASKMIFGICKMSRDQNR
Sbjct: 241 CKAKIKSTAVVRSIQRLQNRLPTNINDASKMIFGICKMSRDQNR 284

BLAST of Lsi04G012670 vs. NCBI nr
Match: XP_008454616.1 (PREDICTED: zinc finger protein CONSTANS-LIKE 4 [Cucumis melo] >KAA0036743.1 zinc finger protein CONSTANS-LIKE 4 [Cucumis melo var. makuwa] >TYJ95810.1 zinc finger protein CONSTANS-LIKE 4 [Cucumis melo var. makuwa])

HSP 1 Score: 464.5 bits (1194), Expect = 6.3e-127
Identity = 248/282 (87.94%), Postives = 256/282 (90.78%), Query Frame = 0

Query: 1   MKKCELCGQQARMFCESDQANLCWDCDEKVHCANFLVAKHSRSLLCHVCQSLTPWAASGR 60
           MKKCELCG QARMFCESDQANLCWDCDEKVHCANFLVAKHSRSLLCHVCQS TPWAASGR
Sbjct: 1   MKKCELCGHQARMFCESDQANLCWDCDEKVHCANFLVAKHSRSLLCHVCQSPTPWAASGR 60

Query: 61  KLTPTVSVCEGCVEVHGGKCEQGGFQERCRDNEEEVDGGGDFDDGEGFDSYEGGDSEEDD 120
           KLTPTVSVCEGCVEVH GKCE    Q+R RDNE EVD G DF DGEGFDSYEGGDS+EDD
Sbjct: 61  KLTPTVSVCEGCVEVHDGKCE----QDRRRDNEVEVDDGDDFVDGEGFDSYEGGDSQEDD 120

Query: 121 DGDEDEDEEDEEEEEEEDGENQVVPWSYASSSSPPPPPTVTSSSEGEISAGAGVASKRMR 180
           DG++D    D+EEE++EDGENQVVPWSYASSSSPPPPPTVTSSSEGEISAGAGVASKRMR
Sbjct: 121 DGEDD----DDEEEDDEDGENQVVPWSYASSSSPPPPPTVTSSSEGEISAGAGVASKRMR 180

Query: 181 EYGVDLDSDDEIECSSAPPSTRPFFNDEATSSSSLRPRKQARVTGPTQSATSTPDDEGCK 240
           EYGVDLDSDDEIE  SAP STRPFFNDEATSSSSLRP KQARV GP QS TSTPDDE CK
Sbjct: 181 EYGVDLDSDDEIESCSAPQSTRPFFNDEATSSSSLRPLKQARVAGPIQSTTSTPDDEACK 240

Query: 241 TELKSTAVVRSIQRLQNQLPTDSNDASKMIFGICKMSRDQNR 283
            ELKSTAVVRSIQRLQN+LPTD NDASKMIFGICKMSRDQNR
Sbjct: 241 AELKSTAVVRSIQRLQNRLPTDINDASKMIFGICKMSRDQNR 274

BLAST of Lsi04G012670 vs. NCBI nr
Match: XP_004146838.1 (zinc finger protein CONSTANS-LIKE 4 [Cucumis sativus] >KGN59860.1 hypothetical protein Csa_002023 [Cucumis sativus])

HSP 1 Score: 461.1 bits (1185), Expect = 7.0e-126
Identity = 247/282 (87.59%), Postives = 256/282 (90.78%), Query Frame = 0

Query: 1   MKKCELCGQQARMFCESDQANLCWDCDEKVHCANFLVAKHSRSLLCHVCQSLTPWAASGR 60
           M KCELCG QARMFCESDQANLCWDCDEKVHCANFLVAKHSR+LLCHVCQS TPWAASGR
Sbjct: 1   MIKCELCGHQARMFCESDQANLCWDCDEKVHCANFLVAKHSRTLLCHVCQSPTPWAASGR 60

Query: 61  KLTPTVSVCEGCVEVHGGKCEQGGFQERCRDNEEEVDGGGDFDDGEGFDSYEGGDSEEDD 120
           KLTPTVSVCEGCV+VH GKC+    QER R+NE EVD G DF D EGFDSYEGGDSEEDD
Sbjct: 61  KLTPTVSVCEGCVQVHDGKCD----QERRRENEVEVDDGDDFVDDEGFDSYEGGDSEEDD 120

Query: 121 DGDEDEDEEDEEEEEEEDGENQVVPWSYASSSSPPPPPTVTSSSEGEISAGAGVASKRMR 180
           DG+ED    D+EEE++EDGENQVVPWSYASSSSPPPPPTVTSSSEGEISAGAGVASKRMR
Sbjct: 121 DGEED----DDEEEDDEDGENQVVPWSYASSSSPPPPPTVTSSSEGEISAGAGVASKRMR 180

Query: 181 EYGVDLDSDDEIECSSAPPSTRPFFNDEATSSSSLRPRKQARVTGPTQSATSTPDDEGCK 240
           EYGVDLDSDDEIE  SAP STRPFFNDEATSSSSLRP KQARVTGPTQS TSTPDDE CK
Sbjct: 181 EYGVDLDSDDEIESCSAPQSTRPFFNDEATSSSSLRPLKQARVTGPTQSITSTPDDEACK 240

Query: 241 TELKSTAVVRSIQRLQNQLPTDSNDASKMIFGICKMSRDQNR 283
            ELKSTAVVRSIQRLQN+LPTD NDASKMIFGICKMSRDQNR
Sbjct: 241 AELKSTAVVRSIQRLQNRLPTDINDASKMIFGICKMSRDQNR 274

BLAST of Lsi04G012670 vs. NCBI nr
Match: XP_022139730.1 (protein BFR2 [Momordica charantia])

HSP 1 Score: 457.2 bits (1175), Expect = 1.0e-124
Identity = 239/282 (84.75%), Postives = 259/282 (91.84%), Query Frame = 0

Query: 1   MKKCELCGQQARMFCESDQANLCWDCDEKVHCANFLVAKHSRSLLCHVCQSLTPWAASGR 60
           MKKCELCGQQARMFCESDQANLCWDCDEKVHCANFLVAKHSRSLLCHVCQS TPW ASGR
Sbjct: 1   MKKCELCGQQARMFCESDQANLCWDCDEKVHCANFLVAKHSRSLLCHVCQSPTPWTASGR 60

Query: 61  KLTPTVSVCEGCVEVHGGKCEQGGFQERCRDNEEEVDGGGDFDDGEGFDSYEGGDSEEDD 120
           KLTPTVSVCEGCVEVHGGKCEQG +QER RDNE+ VD G D +DGEGF+SYEGGDSEEDD
Sbjct: 61  KLTPTVSVCEGCVEVHGGKCEQGAYQERRRDNEDVVDDGDDLEDGEGFESYEGGDSEEDD 120

Query: 121 DGDEDEDEEDEEEEEEEDGENQVVPWSYASSSSPPPPPTVTSSSEGEISAGAGVASKRMR 180
           + +E+E+EE+ EEEE+EDGENQVVPWSYAS SSPPPPPTVTSSSEGE+SAGAGV SKRMR
Sbjct: 121 EEEEEEEEEEGEEEEDEDGENQVVPWSYASYSSPPPPPTVTSSSEGEVSAGAGVTSKRMR 180

Query: 181 EYGVDLDSDDEIECSSAPPSTRPFFNDEATSSSSLRPRKQARVTGPTQSATSTPDDEGCK 240
           +YGVDLDSDDEIE SSA   TRPFFNDEATSSSSLRP KQARVTG +QSA++ PDD  CK
Sbjct: 181 DYGVDLDSDDEIESSSARQGTRPFFNDEATSSSSLRPLKQARVTGRSQSASTIPDDAACK 240

Query: 241 TELKSTAVVRSIQRLQNQLPTDSNDASKMIFGICKMSRDQNR 283
            EL+STAVVRSIQRLQ++LP+D NDASK+IFGICKMSRDQNR
Sbjct: 241 PELESTAVVRSIQRLQSRLPSDINDASKVIFGICKMSRDQNR 282

BLAST of Lsi04G012670 vs. NCBI nr
Match: XP_022936446.1 (protein BFR2 [Cucurbita moschata])

HSP 1 Score: 448.4 bits (1152), Expect = 4.7e-122
Identity = 238/283 (84.10%), Postives = 256/283 (90.46%), Query Frame = 0

Query: 1   MKKCELCGQQARMFCESDQANLCWDCDEKVHCANFLVAKHSRSLLCHVCQSLTPWAASGR 60
           MKKCELCGQQARMFCESDQANLCWDCDE VHCANFLVAKHSRSLLCH CQS TPWAASGR
Sbjct: 1   MKKCELCGQQARMFCESDQANLCWDCDENVHCANFLVAKHSRSLLCHACQSPTPWAASGR 60

Query: 61  KLTPTVSVCEGCVEVHGGKCEQGGFQERCRDNEEEVDGGGDFDDGEGFDSYEGGDSEEDD 120
           KLTPTVSVCEGCVEVHGGKCE+G + ER RDNEEEVD G DFDDGEGF+SYEGGDSEED+
Sbjct: 61  KLTPTVSVCEGCVEVHGGKCEEGRYLERRRDNEEEVDDGDDFDDGEGFESYEGGDSEEDE 120

Query: 121 DGDEDEDEEDEEEEEEEDGENQVVPWSYASSSSPPPPPTVTSSSEGEISAGAGVASKRMR 180
           D D+DE+EE+EEEE++EDGENQVVPWS ASSSSPPPPPTVTSSSEGEIS GAGV SKRMR
Sbjct: 121 DDDDDEEEEEEEEEDDEDGENQVVPWSCASSSSPPPPPTVTSSSEGEISTGAGVTSKRMR 180

Query: 181 EYGVDLDSDDEIECSSAPPSTRPFFNDEATSSSSLRPRKQARVTGPTQS-ATSTPDDEGC 240
           E  VDL+SDD+IECSSA   TRPFFN+EATSSSS RP KQARVTGPTQS +T+T DDE  
Sbjct: 181 ECDVDLESDDDIECSSARQGTRPFFNEEATSSSSHRPLKQARVTGPTQSPSTTTADDEAY 240

Query: 241 KTELKSTAVVRSIQRLQNQLPTDSNDASKMIFGICKMSRDQNR 283
           K +LKS +VVRSIQ+LQN+ PTD NDASKMIFGICKMSRDQNR
Sbjct: 241 KADLKSISVVRSIQKLQNRPPTDINDASKMIFGICKMSRDQNR 283

BLAST of Lsi04G012670 vs. TAIR 10
Match: AT4G27310.1 (B-box type zinc finger family protein )

HSP 1 Score: 149.8 bits (377), Expect = 3.2e-36
Identity = 105/210 (50.00%), Postives = 130/210 (61.90%), Query Frame = 0

Query: 2   KKCELCGQQARMFCESDQANLCWDCDEKVHCANFLVAKHSRSLLCHVCQSLTPWAASGRK 61
           KKC+LC   ARM+CESDQA+LCWDCD KVH ANFLVAKH+R LLC  CQSLTPW A+G +
Sbjct: 3   KKCDLCNGVARMYCESDQASLCWDCDGKVHGANFLVAKHTRCLLCSACQSLTPWKATGLR 62

Query: 62  LTPTVSVCEGCVEVH---GGK----CEQGGFQERCRDNEEEVD----GGGDFDDGEGFDS 121
           L PT SVCE CV +    GG+      +   QE     E E D      GD DD E +D 
Sbjct: 63  LGPTFSVCESCVALKNAGGGRGNRVLSENRGQEEVNSFESEEDRIREDHGDGDDAESYDD 122

Query: 122 YEGGDSEEDDDGDEDEDEEDEEEEEEEDGENQVVPWSYASSSSPPPPPTVTSSSEGEISA 181
            E  + +ED++  +DEDE+D+E+ ++E+ ENQVVPWS A+      PP ++SSS    S 
Sbjct: 123 DE--EEDEDEEYSDDEDEDDDEDGDDEEAENQVVPWSAAAQ----VPPVMSSSSSDGGSG 182

Query: 182 GAGVASKRMREYGVDLDSDDEIECSSAPPS 201
           G+     R RE    L SDDEI  SSA  S
Sbjct: 183 GSVTKRTRARENSDLLCSDDEIGSSSAQGS 206

BLAST of Lsi04G012670 vs. TAIR 10
Match: AT5G54470.1 (B-box type zinc finger family protein )

HSP 1 Score: 117.5 bits (293), Expect = 1.8e-26
Identity = 100/246 (40.65%), Postives = 128/246 (52.03%), Query Frame = 0

Query: 2   KKCELCGQQARMFCESDQANLCWDCDEKVHCANFLVAKHSRSLLCHVCQSLTPWAASGRK 61
           KKCELC   ARM+CESDQA+LCWDCD KVH ANFLVAKH R LLC  CQS TPW ASG  
Sbjct: 4   KKCELCCGVARMYCESDQASLCWDCDGKVHGANFLVAKHMRCLLCSACQSHTPWKASGLN 63

Query: 62  LTPTVSVCEGCVEVHGGKCEQGGFQERCRDNEEEVDGGGDFDDGEGFDSYEGGDSEEDDD 121
           L PTVS+CE C+            +++  + EEE+ G                     +D
Sbjct: 64  LGPTVSICESCLARKKNNNSSLAGRDQNLNQEEEIIG--------------------CND 123

Query: 122 GDEDEDEEDEEEEEEEDGENQVVPWSYASSSSPPPPPTVTSSSEGEISAGAGVASKRMRE 181
           G E  DEE +E+EEEE+ ENQVVP     ++     P V+SSS   +S+G G    +   
Sbjct: 124 GAESYDEESDEDEEEEEVENQVVP-----AAVEQELPVVSSSS--SVSSGEGDQVVKRTR 183

Query: 182 YGVDLDSDDEIECSSAPPSTRPFFNDEATSSSSLRPRKQ-ARVTGPTQSATSTPDDEGCK 241
             +DL+  DE E  S P   +    DE  S S++       ++ G  + A      EGC 
Sbjct: 184 LDLDLNLSDE-ENQSRP--LKRLSRDEGLSRSTVVMNSSIVKLHGGRRKA------EGCD 213

Query: 242 TELKST 247
           T   S+
Sbjct: 244 TSSSSS 213

BLAST of Lsi04G012670 vs. TAIR 10
Match: AT3G21150.1 (B-box 32 )

HSP 1 Score: 65.5 bits (158), Expect = 8.0e-11
Identity = 34/78 (43.59%), Postives = 43/78 (55.13%), Query Frame = 0

Query: 4  CELCGQQARMFCESDQANLCWDCDEKVHCANFLVAKHSRSLLCHVCQSLTPWAASGRKLT 63
          CELCG +A + C +D A LC  CD K H +NFL A+H R ++C  C+SLT    SG  L 
Sbjct: 5  CELCGAEADLHCAADSAFLCRSCDAKFHASNFLFARHFRRVICPNCKSLTQNFVSGPLLP 64

Query: 64 -PTVSVCEGCVEVHGGKC 81
           P  + C  C E     C
Sbjct: 65 WPPRTTC--CSESSSSSC 80

BLAST of Lsi04G012670 vs. TAIR 10
Match: AT4G15250.1 (B-box type zinc finger protein with CCT domain )

HSP 1 Score: 65.5 bits (158), Expect = 8.0e-11
Identity = 33/71 (46.48%), Postives = 46/71 (64.79%), Query Frame = 0

Query: 3  KCELCG-QQARMFCESDQANLCWDCDEKVHCANFLVAKHSRSLLCHVCQSLTPWAASGRK 62
          +C+ CG ++A ++C+SD A LC +CD  VH AN L  +H+RSLLC  C SL P A     
Sbjct: 4  RCDFCGTEKALIYCKSDSAKLCLNCDVNVHSANPLSQRHTRSLLCEKC-SLQPTAV--HC 63

Query: 63 LTPTVSVCEGC 73
          +   VS+C+GC
Sbjct: 64 MNENVSLCQGC 71

BLAST of Lsi04G012670 vs. TAIR 10
Match: AT4G15248.1 (B-box type zinc finger family protein )

HSP 1 Score: 63.5 bits (153), Expect = 3.0e-10
Identity = 26/50 (52.00%), Postives = 34/50 (68.00%), Query Frame = 0

Query: 4  CELCGQQARMFCESDQANLCWDCDEKVHCANFLVAKHSRSLLCHVCQSLT 54
          CELCG+ A ++CE+D A LC  CD  VH ANFL  +H R ++C  C+ LT
Sbjct: 32 CELCGENATVYCEADAAFLCRKCDRWVHSANFLARRHLRRVICTTCRKLT 81

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Q9LJB71.1e-0943.59B-box zinc finger protein 32 OS=Arabidopsis thaliana OX=3702 GN=BBX32 PE=1 SV=1[more]
O233791.1e-0946.48Putative zinc finger protein CONSTANS-LIKE 11 OS=Arabidopsis thaliana OX=3702 GN... [more]
Q1G3I24.3e-0952.00B-box domain protein 30 OS=Arabidopsis thaliana OX=3702 GN=MIP1A PE=1 SV=1[more]
Q9LRM41.6e-0854.90B-box domain protein 31 OS=Arabidopsis thaliana OX=3702 GN=MIP1B PE=2 SV=1[more]
Q9LUA92.8e-0844.29Zinc finger protein CONSTANS-LIKE 10 OS=Arabidopsis thaliana OX=3702 GN=COL10 PE... [more]
Match NameE-valueIdentityDescription
A0A5D3B7343.1e-12787.94Zinc finger protein CONSTANS-LIKE 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E5... [more]
A0A1S3BZT73.1e-12787.94zinc finger protein CONSTANS-LIKE 4 OS=Cucumis melo OX=3656 GN=LOC103494983 PE=4... [more]
A0A0A0LCX63.4e-12687.59B box-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G850640 ... [more]
A0A6J1CD444.9e-12584.75protein BFR2 OS=Momordica charantia OX=3673 GN=LOC111010576 PE=4 SV=1[more]
A0A6J1F7H62.3e-12284.10protein BFR2 OS=Cucurbita moschata OX=3662 GN=LOC111443061 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
XP_038899463.13.8e-13290.14nucleolin [Benincasa hispida][more]
XP_008454616.16.3e-12787.94PREDICTED: zinc finger protein CONSTANS-LIKE 4 [Cucumis melo] >KAA0036743.1 zinc... [more]
XP_004146838.17.0e-12687.59zinc finger protein CONSTANS-LIKE 4 [Cucumis sativus] >KGN59860.1 hypothetical p... [more]
XP_022139730.11.0e-12484.75protein BFR2 [Momordica charantia][more]
XP_022936446.14.7e-12284.10protein BFR2 [Cucurbita moschata][more]
Match NameE-valueIdentityDescription
AT4G27310.13.2e-3650.00B-box type zinc finger family protein [more]
AT5G54470.11.8e-2640.65B-box type zinc finger family protein [more]
AT3G21150.18.0e-1143.59B-box 32 [more]
AT4G15250.18.0e-1146.48B-box type zinc finger protein with CCT domain [more]
AT4G15248.13.0e-1052.00B-box type zinc finger family protein [more]
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000315B-box-type zinc fingerSMARTSM00336bboxneu5coord: 1..45
e-value: 9.3E-10
score: 48.4
IPR000315B-box-type zinc fingerPFAMPF00643zf-B_boxcoord: 2..42
e-value: 4.8E-6
score: 26.6
IPR000315B-box-type zinc fingerPROSITEPS50119ZF_BBOXcoord: 1..45
score: 9.641247
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 199..236
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 96..141
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 91..241
NoneNo IPR availablePANTHERPTHR31717ZINC FINGER PROTEIN CONSTANS-LIKE 10coord: 1..242
NoneNo IPR availablePANTHERPTHR31717:SF60OS08G0178800 PROTEINcoord: 1..242
NoneNo IPR availableCDDcd19821Bbox1_BBX-likecoord: 3..45
e-value: 1.08837E-12
score: 59.2335

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi04G012670.1Lsi04G012670.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0008270 zinc ion binding