Lsi04G012670 (gene) Bottle gourd (USVL1VR-Ls) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATTAAGGGTAGTTCCCCTAATATAAGGAAATTGTACTTTCCCCTTCCGCTCCTTTTATTCTTCGGCATTTCTTTCGGAATGAACAGATAAAAGGGGAAAGGAAGAAGAAGAAGGAGAAGAAAAAATCAGCGGCTGAAAAATCAAGAGGGTTACAAGAAGAAGAAGAAGAACAACAAGACTGAATTTGAGATTTCGAAGAAGAAATGAAGAAGTGCGAGCTGTGTGGACAGCAAGCGAGGATGTTCTGCGAGTCGGATCAGGCGAACCTGTGTTGGGACTGCGATGAGAAGGTTCACTGTGCAAATTTTCTTGTTGCTAAACATTCTCGGAGCCTTCTTTGTCACGTATGTCAGTCGCTGACTCCATGGGCGGCCTCTGGTCGGAAGCTTACGCCGACGGTTTCTGTGTGCGAGGGATGTGTCGAAGTCCATGGTGGTAAATGTGAGCAAGGTGGATTTCAAGAGCGGTGTAGAGATAACGAGGAGGAAGTTGATGGTGGTGGTGATTTTGACGATGGTGAAGGTTTCGATAGTTATGAGGGAGGTGATAGTGAGGAAGACGATGATGGGGATGAAGATGAGGACGAGGAAGACGAGGAGGAAGAAGAGGAAGAGGACGGAGAAAACCAGGTGGTGCCCTGGTCTTATGCATCTTCTTCGTCGCCACCACCGCCTCCGACAGTGACTTCTAGCAGCGAGGGCGAGATTTCAGCCGGCGCTGGTGTCGCATCGAAGCGGATGAGAGAATACGGCGTCGATCTCGATTCCGATGTATGTATTTTTTAGGTCTTGTTTTCTTTCTATTTCCTTTTCTTCTGTGTTTTCATTTTCCTTAGTCTGTGCTGAAGAAAATCGCTTGCGATTTCGAAATCTTTTGTTCATTCATTAGCTTTTCTGGAATCGGTGTTTTGATAAAATCATATCGTTTTTTCTCATACAACATAAATCAATGGTTTTCAGTTTTACAAGTTAATCCGACTCAAGATTTGAACCGAATCGTTCTGTTTTATATCCCTTTTAGCCTTTGATTTTGGTAAGAATCGCATTAATTTGCCGATCTGAAACATAATCATCATTTTCCTAGTTATTAATTTTCCAGTTATCCAAACAGGGCTTTAGTAATCGTTTTCCACTTGAATGCAGGATGAAATCGAGTGTTCTTCTGCACCACCGAGTACAAGGCCGTTTTTCAATGACGAAGCGACATCCTCGAGTTCCCTTAGGCCACGGAAGCAAGCAAGAGTTACAGGACCAACCCAATCAGCCACATCCACTCCGGATGATGAAGGTTGTAAAACCGAGTTAAAATCCACGGCTGTCGTTAGATCTATCCAGAGACTCCAGAATCAGCTTCCCACCGACAGTAACGATGCTTCCAAAATGATCTTTGGGATATGCAAAATGAGCAGAGATCAGAATCGTTGA ATTAAGGGTAGTTCCCCTAATATAAGGAAATTGTACTTTCCCCTTCCGCTCCTTTTATTCTTCGGCATTTCTTTCGGAATGAACAGATAAAAGGGGAAAGGAAGAAGAAGAAGGAGAAGAAAAAATCAGCGGCTGAAAAATCAAGAGGGTTACAAGAAGAAGAAGAAGAACAACAAGACTGAATTTGAGATTTCGAAGAAGAAATGAAGAAGTGCGAGCTGTGTGGACAGCAAGCGAGGATGTTCTGCGAGTCGGATCAGGCGAACCTGTGTTGGGACTGCGATGAGAAGGTTCACTGTGCAAATTTTCTTGTTGCTAAACATTCTCGGAGCCTTCTTTGTCACGTATGTCAGTCGCTGACTCCATGGGCGGCCTCTGGTCGGAAGCTTACGCCGACGGTTTCTGTGTGCGAGGGATGTGTCGAAGTCCATGGTGGTAAATGTGAGCAAGGTGGATTTCAAGAGCGGTGTAGAGATAACGAGGAGGAAGTTGATGGTGGTGGTGATTTTGACGATGGTGAAGGTTTCGATAGTTATGAGGGAGGTGATAGTGAGGAAGACGATGATGGGGATGAAGATGAGGACGAGGAAGACGAGGAGGAAGAAGAGGAAGAGGACGGAGAAAACCAGGTGGTGCCCTGGTCTTATGCATCTTCTTCGTCGCCACCACCGCCTCCGACAGTGACTTCTAGCAGCGAGGGCGAGATTTCAGCCGGCGCTGGTGTCGCATCGAAGCGGATGAGAGAATACGGCGTCGATCTCGATTCCGATGATGAAATCGAGTGTTCTTCTGCACCACCGAGTACAAGGCCGTTTTTCAATGACGAAGCGACATCCTCGAGTTCCCTTAGGCCACGGAAGCAAGCAAGAGTTACAGGACCAACCCAATCAGCCACATCCACTCCGGATGATGAAGGTTGTAAAACCGAGTTAAAATCCACGGCTGTCGTTAGATCTATCCAGAGACTCCAGAATCAGCTTCCCACCGACAGTAACGATGCTTCCAAAATGATCTTTGGGATATGCAAAATGAGCAGAGATCAGAATCGTTGA ATGAAGAAGTGCGAGCTGTGTGGACAGCAAGCGAGGATGTTCTGCGAGTCGGATCAGGCGAACCTGTGTTGGGACTGCGATGAGAAGGTTCACTGTGCAAATTTTCTTGTTGCTAAACATTCTCGGAGCCTTCTTTGTCACGTATGTCAGTCGCTGACTCCATGGGCGGCCTCTGGTCGGAAGCTTACGCCGACGGTTTCTGTGTGCGAGGGATGTGTCGAAGTCCATGGTGGTAAATGTGAGCAAGGTGGATTTCAAGAGCGGTGTAGAGATAACGAGGAGGAAGTTGATGGTGGTGGTGATTTTGACGATGGTGAAGGTTTCGATAGTTATGAGGGAGGTGATAGTGAGGAAGACGATGATGGGGATGAAGATGAGGACGAGGAAGACGAGGAGGAAGAAGAGGAAGAGGACGGAGAAAACCAGGTGGTGCCCTGGTCTTATGCATCTTCTTCGTCGCCACCACCGCCTCCGACAGTGACTTCTAGCAGCGAGGGCGAGATTTCAGCCGGCGCTGGTGTCGCATCGAAGCGGATGAGAGAATACGGCGTCGATCTCGATTCCGATGATGAAATCGAGTGTTCTTCTGCACCACCGAGTACAAGGCCGTTTTTCAATGACGAAGCGACATCCTCGAGTTCCCTTAGGCCACGGAAGCAAGCAAGAGTTACAGGACCAACCCAATCAGCCACATCCACTCCGGATGATGAAGGTTGTAAAACCGAGTTAAAATCCACGGCTGTCGTTAGATCTATCCAGAGACTCCAGAATCAGCTTCCCACCGACAGTAACGATGCTTCCAAAATGATCTTTGGGATATGCAAAATGAGCAGAGATCAGAATCGTTGA MKKCELCGQQARMFCESDQANLCWDCDEKVHCANFLVAKHSRSLLCHVCQSLTPWAASGRKLTPTVSVCEGCVEVHGGKCEQGGFQERCRDNEEEVDGGGDFDDGEGFDSYEGGDSEEDDDGDEDEDEEDEEEEEEEDGENQVVPWSYASSSSPPPPPTVTSSSEGEISAGAGVASKRMREYGVDLDSDDEIECSSAPPSTRPFFNDEATSSSSLRPRKQARVTGPTQSATSTPDDEGCKTELKSTAVVRSIQRLQNQLPTDSNDASKMIFGICKMSRDQNR Homology
BLAST of Lsi04G012670 vs. ExPASy Swiss-Prot
Match: Q9LJB7 (B-box zinc finger protein 32 OS=Arabidopsis thaliana OX=3702 GN=BBX32 PE=1 SV=1) HSP 1 Score: 65.5 bits (158), Expect = 1.1e-09 Identity = 34/78 (43.59%), Postives = 43/78 (55.13%), Query Frame = 0
BLAST of Lsi04G012670 vs. ExPASy Swiss-Prot
Match: O23379 (Putative zinc finger protein CONSTANS-LIKE 11 OS=Arabidopsis thaliana OX=3702 GN=COL11 PE=1 SV=2) HSP 1 Score: 65.5 bits (158), Expect = 1.1e-09 Identity = 33/71 (46.48%), Postives = 46/71 (64.79%), Query Frame = 0
BLAST of Lsi04G012670 vs. ExPASy Swiss-Prot
Match: Q1G3I2 (B-box domain protein 30 OS=Arabidopsis thaliana OX=3702 GN=MIP1A PE=1 SV=1) HSP 1 Score: 63.5 bits (153), Expect = 4.3e-09 Identity = 26/50 (52.00%), Postives = 34/50 (68.00%), Query Frame = 0
BLAST of Lsi04G012670 vs. ExPASy Swiss-Prot
Match: Q9LRM4 (B-box domain protein 31 OS=Arabidopsis thaliana OX=3702 GN=MIP1B PE=2 SV=1) HSP 1 Score: 61.6 bits (148), Expect = 1.6e-08 Identity = 28/51 (54.90%), Postives = 33/51 (64.71%), Query Frame = 0
BLAST of Lsi04G012670 vs. ExPASy Swiss-Prot
Match: Q9LUA9 (Zinc finger protein CONSTANS-LIKE 10 OS=Arabidopsis thaliana OX=3702 GN=COL10 PE=1 SV=1) HSP 1 Score: 60.8 bits (146), Expect = 2.8e-08 Identity = 31/70 (44.29%), Postives = 40/70 (57.14%), Query Frame = 0
BLAST of Lsi04G012670 vs. ExPASy TrEMBL
Match: A0A5D3B734 (Zinc finger protein CONSTANS-LIKE 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold110G00930 PE=4 SV=1) HSP 1 Score: 464.5 bits (1194), Expect = 3.1e-127 Identity = 248/282 (87.94%), Postives = 256/282 (90.78%), Query Frame = 0
BLAST of Lsi04G012670 vs. ExPASy TrEMBL
Match: A0A1S3BZT7 (zinc finger protein CONSTANS-LIKE 4 OS=Cucumis melo OX=3656 GN=LOC103494983 PE=4 SV=1) HSP 1 Score: 464.5 bits (1194), Expect = 3.1e-127 Identity = 248/282 (87.94%), Postives = 256/282 (90.78%), Query Frame = 0
BLAST of Lsi04G012670 vs. ExPASy TrEMBL
Match: A0A0A0LCX6 (B box-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G850640 PE=4 SV=1) HSP 1 Score: 461.1 bits (1185), Expect = 3.4e-126 Identity = 247/282 (87.59%), Postives = 256/282 (90.78%), Query Frame = 0
BLAST of Lsi04G012670 vs. ExPASy TrEMBL
Match: A0A6J1CD44 (protein BFR2 OS=Momordica charantia OX=3673 GN=LOC111010576 PE=4 SV=1) HSP 1 Score: 457.2 bits (1175), Expect = 4.9e-125 Identity = 239/282 (84.75%), Postives = 259/282 (91.84%), Query Frame = 0
BLAST of Lsi04G012670 vs. ExPASy TrEMBL
Match: A0A6J1F7H6 (protein BFR2 OS=Cucurbita moschata OX=3662 GN=LOC111443061 PE=4 SV=1) HSP 1 Score: 448.4 bits (1152), Expect = 2.3e-122 Identity = 238/283 (84.10%), Postives = 256/283 (90.46%), Query Frame = 0
BLAST of Lsi04G012670 vs. NCBI nr
Match: XP_038899463.1 (nucleolin [Benincasa hispida]) HSP 1 Score: 481.9 bits (1239), Expect = 3.8e-132 Identity = 256/284 (90.14%), Postives = 264/284 (92.96%), Query Frame = 0
BLAST of Lsi04G012670 vs. NCBI nr
Match: XP_008454616.1 (PREDICTED: zinc finger protein CONSTANS-LIKE 4 [Cucumis melo] >KAA0036743.1 zinc finger protein CONSTANS-LIKE 4 [Cucumis melo var. makuwa] >TYJ95810.1 zinc finger protein CONSTANS-LIKE 4 [Cucumis melo var. makuwa]) HSP 1 Score: 464.5 bits (1194), Expect = 6.3e-127 Identity = 248/282 (87.94%), Postives = 256/282 (90.78%), Query Frame = 0
BLAST of Lsi04G012670 vs. NCBI nr
Match: XP_004146838.1 (zinc finger protein CONSTANS-LIKE 4 [Cucumis sativus] >KGN59860.1 hypothetical protein Csa_002023 [Cucumis sativus]) HSP 1 Score: 461.1 bits (1185), Expect = 7.0e-126 Identity = 247/282 (87.59%), Postives = 256/282 (90.78%), Query Frame = 0
BLAST of Lsi04G012670 vs. NCBI nr
Match: XP_022139730.1 (protein BFR2 [Momordica charantia]) HSP 1 Score: 457.2 bits (1175), Expect = 1.0e-124 Identity = 239/282 (84.75%), Postives = 259/282 (91.84%), Query Frame = 0
BLAST of Lsi04G012670 vs. NCBI nr
Match: XP_022936446.1 (protein BFR2 [Cucurbita moschata]) HSP 1 Score: 448.4 bits (1152), Expect = 4.7e-122 Identity = 238/283 (84.10%), Postives = 256/283 (90.46%), Query Frame = 0
BLAST of Lsi04G012670 vs. TAIR 10
Match: AT4G27310.1 (B-box type zinc finger family protein ) HSP 1 Score: 149.8 bits (377), Expect = 3.2e-36 Identity = 105/210 (50.00%), Postives = 130/210 (61.90%), Query Frame = 0
BLAST of Lsi04G012670 vs. TAIR 10
Match: AT5G54470.1 (B-box type zinc finger family protein ) HSP 1 Score: 117.5 bits (293), Expect = 1.8e-26 Identity = 100/246 (40.65%), Postives = 128/246 (52.03%), Query Frame = 0
BLAST of Lsi04G012670 vs. TAIR 10
Match: AT3G21150.1 (B-box 32 ) HSP 1 Score: 65.5 bits (158), Expect = 8.0e-11 Identity = 34/78 (43.59%), Postives = 43/78 (55.13%), Query Frame = 0
BLAST of Lsi04G012670 vs. TAIR 10
Match: AT4G15250.1 (B-box type zinc finger protein with CCT domain ) HSP 1 Score: 65.5 bits (158), Expect = 8.0e-11 Identity = 33/71 (46.48%), Postives = 46/71 (64.79%), Query Frame = 0
BLAST of Lsi04G012670 vs. TAIR 10
Match: AT4G15248.1 (B-box type zinc finger family protein ) HSP 1 Score: 63.5 bits (153), Expect = 3.0e-10 Identity = 26/50 (52.00%), Postives = 34/50 (68.00%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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