Lsi04G012380 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi04G012380
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	protein NDR1-like
Location	chr04: 19229915 .. 19230535 (+)
RNA-Seq Expression	Lsi04G012380
Synteny	Lsi04G012380

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACGGAATCCGGCGGTTGCTCCAAGTGCTGCTTGAAGTTCATCATAACTGCCGGCTTTGCAGCTCTGTTCTTATGGCTAAGCCTTCGAACCCACAAACCCAAATGCTCAATTGAATATTTCTACATTCCAGCCTTAAATCAATCCCTAAATACCTCCTCAAATTCCACCCTCTTCTTCGATCTGCGTCTCAAAAACCAGAACAAAGACAAATCCGTCTACTACGACCCTATCCATATCAACCTCACGCTCGTCGAGCCGCCGGACGGAACTCGGCGCCCGGTGGCCAACTTGACGGTGCTTGGATTCCACCAAGGCCGCGACAAGAAGGCGTTCAGAAAGGAGACCGTCGAGGCCCGTGGAGTGGATTGGAAAGCGGTTTCCCGAAATGGATCGGCGGTTTTCTGGCTGGATTTGGCGACCGAGGTCAGGTACAAGATCTTGCTGTGGAAGACCAAGAGGGATAATTTGAGACTCGGGGCAGAGGTCAAAGTCAACGGGCAGGGAGCAAAGGAAGACCCACGTGGGATCACGCTCAAGTCCGGCGCCGCCGTGCCCGGCGGCTCACCGGTGAGGGTTATTTGGAGTTTTTGGGTGTTTGTTTTGTGGAATCTTTTGTGA

mRNA sequence

ATGACGGAATCCGGCGGTTGCTCCAAGTGCTGCTTGAAGTTCATCATAACTGCCGGCTTTGCAGCTCTGTTCTTATGGCTAAGCCTTCGAACCCACAAACCCAAATGCTCAATTGAATATTTCTACATTCCAGCCTTAAATCAATCCCTAAATACCTCCTCAAATTCCACCCTCTTCTTCGATCTGCGTCTCAAAAACCAGAACAAAGACAAATCCGTCTACTACGACCCTATCCATATCAACCTCACGCTCGTCGAGCCGCCGGACGGAACTCGGCGCCCGGTGGCCAACTTGACGGTGCTTGGATTCCACCAAGGCCGCGACAAGAAGGCGTTCAGAAAGGAGACCGTCGAGGCCCGTGGAGTGGATTGGAAAGCGGTTTCCCGAAATGGATCGGCGGTTTTCTGGCTGGATTTGGCGACCGAGGTCAGGTACAAGATCTTGCTGTGGAAGACCAAGAGGGATAATTTGAGACTCGGGGCAGAGGTCAAAGTCAACGGGCAGGGAGCAAAGGAAGACCCACGTGGGATCACGCTCAAGTCCGGCGCCGCCGTGCCCGGCGGCTCACCGGTGAGGGTTATTTGGAGTTTTTGGGTGTTTGTTTTGTGGAATCTTTTGTGA

Coding sequence (CDS)

ATGACGGAATCCGGCGGTTGCTCCAAGTGCTGCTTGAAGTTCATCATAACTGCCGGCTTTGCAGCTCTGTTCTTATGGCTAAGCCTTCGAACCCACAAACCCAAATGCTCAATTGAATATTTCTACATTCCAGCCTTAAATCAATCCCTAAATACCTCCTCAAATTCCACCCTCTTCTTCGATCTGCGTCTCAAAAACCAGAACAAAGACAAATCCGTCTACTACGACCCTATCCATATCAACCTCACGCTCGTCGAGCCGCCGGACGGAACTCGGCGCCCGGTGGCCAACTTGACGGTGCTTGGATTCCACCAAGGCCGCGACAAGAAGGCGTTCAGAAAGGAGACCGTCGAGGCCCGTGGAGTGGATTGGAAAGCGGTTTCCCGAAATGGATCGGCGGTTTTCTGGCTGGATTTGGCGACCGAGGTCAGGTACAAGATCTTGCTGTGGAAGACCAAGAGGGATAATTTGAGACTCGGGGCAGAGGTCAAAGTCAACGGGCAGGGAGCAAAGGAAGACCCACGTGGGATCACGCTCAAGTCCGGCGCCGCCGTGCCCGGCGGCTCACCGGTGAGGGTTATTTGGAGTTTTTGGGTGTTTGTTTTGTGGAATCTTTTGTGA

Protein sequence

MTESGGCSKCCLKFIITAGFAALFLWLSLRTHKPKCSIEYFYIPALNQSLNTSSNSTLFFDLRLKNQNKDKSVYYDPIHINLTLVEPPDGTRRPVANLTVLGFHQGRDKKAFRKETVEARGVDWKAVSRNGSAVFWLDLATEVRYKILLWKTKRDNLRLGAEVKVNGQGAKEDPRGITLKSGAAVPGGSPVRVIWSFWVFVLWNLL

Homology

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BLAST of Lsi04G012380 vs. ExPASy Swiss-Prot
Match: O48915 (Protein NDR1 OS=Arabidopsis thaliana OX=3702 GN=NDR1 PE=1 SV=1)

HSP 1 Score: 169.9 bits (429), Expect = 3.1e-41
Identity = 99/211 (46.92%), Postives = 126/211 (59.72%), Query Frame = 0


Query: 2   TESG-GCSKCCLKFIITAGFAALFLWLSLRTHKPKCSIEYFYIPALNQSLNTSSNSTLFF 61
           TE G  C  CCL FI TAG  +LFLWLSLR  KPKCSI+ F+IPAL +  N+  N+TL F
Sbjct: 8   TEGGRNCCTCCLSFIFTAGLTSLFLWLSLRADKPKCSIQNFFIPALGKDPNSRDNTTLNF 67

Query: 62  DLRLKNQNKDKSVYYDPIHINLTLVEPP---DGTRRPVANLTVLGFHQGRDKKAFRKETV 121
            +R  N NKDK +YYD +H+N + +            V N TV  F+QG  KKA +   V
Sbjct: 68  MVRCDNPNKDKGIYYDDVHLNFSTINTTKINSSALVLVGNYTVPKFYQGHKKKAKKWGQV 127

Query: 122 EA--RGVDWKAVSRNGSAVFWLDLATEVRYKILLWKTKRDNLRLGAEVKVNGQGAKEDPR 181
           +        +AV  NGSAVF LDL T+VR+KI+ WKTKR  + +GA+V+VNG G K   +
Sbjct: 128 KPLNNQTVLRAVLPNGSAVFRLDLKTQVRFKIVFWKTKRYGVEVGADVEVNGDGVKAQKK 187

Query: 182 GITLKSGAAVPGGSPVRVIWSFWVFVLWNLL 207
           GI +K         P+R   SF + VL NLL
Sbjct: 188 GIKMKKS---DSSFPLRS--SFPISVLMNLL 213

[Close]

BLAST of Lsi04G012380 vs. ExPASy TrEMBL
Match: A0A5A7TYN2 (Protein NDR1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1251G00260 PE=4 SV=1)

HSP 1 Score: 334.0 bits (855), Expect = 4.6e-88
Identity = 166/207 (80.19%), Postives = 179/207 (86.47%), Query Frame = 0


Query: 1   MTESGGCSKCCLKFIITAGFAALFLWLSLRTHKPKCSIEYFYIPALNQSLNTSSNS-TLF 60
           MTESG C KCC KFIITAGFAALFLWLSLRT KPKCSIE FYIPALNQSLN+SSNS TL+
Sbjct: 1   MTESGWCCKCCFKFIITAGFAALFLWLSLRTRKPKCSIESFYIPALNQSLNSSSNSTTLY 60

Query: 61  FDLRLKNQNKDKSVYYDPIHINLTLVEPPDGTRRPVANLTVLGFHQGRDKKAFRKETVEA 120
           FDLRLKNQNKDKSVYYD I++N TL+   D  RRPV NLTV GFHQGRDKKA RKE+VEA
Sbjct: 61  FDLRLKNQNKDKSVYYDTIYLNFTLL---DEARRPVGNLTVPGFHQGRDKKALRKESVEA 120

Query: 121 RGVDWKAVSRNGSAVFWLDLATEVRYKILLWKTKRDNLRLGAEVKVNGQGAKEDPRGITL 180
           RGVDWKAVSRNGS +  LDLAT VRYKILLWKTKR+NLRLG E+KVNGQG K++P GITL
Sbjct: 121 RGVDWKAVSRNGSTIVRLDLATAVRYKILLWKTKRENLRLGTEIKVNGQGLKDNPHGITL 180

Query: 181 KSGAAVPGGSPVRVIWSFWVFVLWNLL 207
            SGAA+PGG+ VRVIWSFWVFV W  L
Sbjct: 181 NSGAAMPGGTLVRVIWSFWVFVWWKFL 204

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BLAST of Lsi04G012380 vs. ExPASy TrEMBL
Match: A0A1S3BZM3 (protein NDR1-like OS=Cucumis melo OX=3656 GN=LOC103494933 PE=4 SV=1)

HSP 1 Score: 334.0 bits (855), Expect = 4.6e-88
Identity = 166/207 (80.19%), Postives = 179/207 (86.47%), Query Frame = 0


Query: 1   MTESGGCSKCCLKFIITAGFAALFLWLSLRTHKPKCSIEYFYIPALNQSLNTSSNS-TLF 60
           MTESG C KCC KFIITAGFAALFLWLSLRT KPKCSIE FYIPALNQSLN+SSNS TL+
Sbjct: 1   MTESGWCCKCCFKFIITAGFAALFLWLSLRTRKPKCSIESFYIPALNQSLNSSSNSTTLY 60

Query: 61  FDLRLKNQNKDKSVYYDPIHINLTLVEPPDGTRRPVANLTVLGFHQGRDKKAFRKETVEA 120
           FDLRLKNQNKDKSVYYD I++N TL+   D  RRPV NLTV GFHQGRDKKA RKE+VEA
Sbjct: 61  FDLRLKNQNKDKSVYYDTIYLNFTLL---DEARRPVGNLTVPGFHQGRDKKALRKESVEA 120

Query: 121 RGVDWKAVSRNGSAVFWLDLATEVRYKILLWKTKRDNLRLGAEVKVNGQGAKEDPRGITL 180
           RGVDWKAVSRNGS +  LDLAT VRYKILLWKTKR+NLRLG E+KVNGQG K++P GITL
Sbjct: 121 RGVDWKAVSRNGSTIVRLDLATAVRYKILLWKTKRENLRLGTEIKVNGQGLKDNPHGITL 180

Query: 181 KSGAAVPGGSPVRVIWSFWVFVLWNLL 207
            SGAA+PGG+ VRVIWSFWVFV W  L
Sbjct: 181 NSGAAMPGGTLVRVIWSFWVFVWWKFL 204

[Close]

BLAST of Lsi04G012380 vs. ExPASy TrEMBL
Match: A0A6J1CEH8 (protein NDR1-like OS=Momordica charantia OX=3673 GN=LOC111010486 PE=4 SV=1)

HSP 1 Score: 322.8 bits (826), Expect = 1.1e-84
Identity = 159/203 (78.33%), Postives = 172/203 (84.73%), Query Frame = 0


Query: 1   MTESGGCSKCCLKFIITAGFAALFLWLSLRTHKPKCSIEYFYIPALNQSLNTSSNSTLFF 60
           MTE+GGC +CC  FI+T+GF ALFLWLSLRTHKPKCSIE FYIPALNQSLN+SS+ST+FF
Sbjct: 1   MTEAGGCGRCCFSFILTSGFTALFLWLSLRTHKPKCSIESFYIPALNQSLNSSSDSTVFF 60

Query: 61  DLRLKNQNKDKSVYYDPIHINLTLVEPPDGTRRPVANLTVLGFHQGRDKKAFRKETVEAR 120
           DLRLKNQNKDKSV+YD I++NLTLV   DG RRPV NLTV GFHQGRDKKAFRK  VEAR
Sbjct: 61  DLRLKNQNKDKSVFYDAINLNLTLV---DGGRRPVGNLTVAGFHQGRDKKAFRKGQVEAR 120

Query: 121 GVDWKAVSRNGSAVFWLDLATEVRYKILLWKTKRDNLRLGAEVKVNGQGAKEDPRGITLK 180
           GVDWKAV RNGSAVF LDLAT VRYKIL WKTKRDNLR+GAEVKVN QGAKE P GITL 
Sbjct: 121 GVDWKAVRRNGSAVFRLDLATAVRYKILFWKTKRDNLRVGAEVKVNAQGAKEYPHGITLS 180

Query: 181 SGAAVPGGSPVRVIWSFWVFVLW 204
           SGAAV G SP   +WS    +LW
Sbjct: 181 SGAAVAGRSPAGALWSVGALILW 200

[Close]

BLAST of Lsi04G012380 vs. ExPASy TrEMBL
Match: A0A6J1F5U5 (protein NDR1-like OS=Cucurbita moschata OX=3662 GN=LOC111442624 PE=4 SV=1)

HSP 1 Score: 317.4 bits (812), Expect = 4.4e-83
Identity = 156/206 (75.73%), Postives = 174/206 (84.47%), Query Frame = 0


Query: 1   MTESGGCSKCCLKFIITAGFAALFLWLSLRTHKPKCSIEYFYIPALNQSLNTSSNSTLFF 60
           MTE GGC +CC  FI+T+GFAALFLWLSLRT KPKCSIE+FYIPALNQSLN+  NST+ F
Sbjct: 1   MTEPGGCCRCCFSFILTSGFAALFLWLSLRTRKPKCSIEHFYIPALNQSLNSPLNSTVSF 60

Query: 61  DLRLKNQNKDKSVYYDPIHINLTLV-EPPDGTRRPVANLTVLGFHQGRDKKAFRKETVEA 120
           DLRLKNQNKDKSV+YD +++NLTLV     G+RRP+ N+TV GFHQGR KKAFR ET+E 
Sbjct: 61  DLRLKNQNKDKSVFYDSLNLNLTLVGAAAGGSRRPLGNVTVPGFHQGRGKKAFRNETIET 120

Query: 121 RGVDWKAVSRNGSAVFWLDLATEVRYKILLWKTKRDNLRLGAEVKVNGQGAKEDPRGITL 180
           RGVDWKAVSRNG+AVF LDLAT VR+KIL W TKR+NLR+GAE KVN QGA E P GITL
Sbjct: 121 RGVDWKAVSRNGAAVFRLDLATAVRFKILFWNTKRENLRVGAEFKVNEQGATEYP-GITL 180

Query: 181 KSGAAVPGGSPVRVIWSFWVFVLWNL 206
            SG AVP GSPVRVIWSFWVFVLW L
Sbjct: 181 SSGVAVPDGSPVRVIWSFWVFVLWKL 205

[Close]

BLAST of Lsi04G012380 vs. ExPASy TrEMBL
Match: A0A6J1IH99 (protein NDR1-like OS=Cucurbita maxima OX=3661 GN=LOC111476935 PE=4 SV=1)

HSP 1 Score: 310.1 bits (793), Expect = 7.1e-81
Identity = 155/205 (75.61%), Postives = 171/205 (83.41%), Query Frame = 0


Query: 1   MTESGGCSKCCLKFIITAGFAALFLWLSLRTHKPKCSIEYFYIPALNQSLNTSSNSTLFF 60
           MTESGGC +CC  FI+T+GFAALFLWLSLRT KPKCSIE FYIPALNQSLN+  NST+ F
Sbjct: 1   MTESGGCCRCCFSFILTSGFAALFLWLSLRTRKPKCSIESFYIPALNQSLNSPLNSTVSF 60

Query: 61  DLRLKNQNKDKSVYYDPIHINLTLVEPPDGTRRPVANLTVLGFHQGRDKKAFRKETVEAR 120
           DLRLKNQNKDKSV+YD +++NLTLV       RP+ N+TV GFHQGR KKAFR ET+EAR
Sbjct: 61  DLRLKNQNKDKSVFYDSLNLNLTLV-----GGRPLGNVTVPGFHQGRGKKAFRNETIEAR 120

Query: 121 GVDWKAVSRNGSAVFWLDLATEVRYKILLWKTKRDNLRLGAEVKVNGQGAKEDPRGITLK 180
           GVDWKAVSRNGSA+F LDLAT VR+KIL W TKR+NLR+GAE KVN QGA E P GITL 
Sbjct: 121 GVDWKAVSRNGSAIFRLDLATAVRFKILFWNTKRENLRVGAEFKVNKQGATEYP-GITLS 180

Query: 181 SGAAVPGGSPVRVIWSFWVFVLWNL 206
           SGAAVP GSPV VIWS WVFVLW L
Sbjct: 181 SGAAVPDGSPVTVIWSSWVFVLWKL 199

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BLAST of Lsi04G012380 vs. NCBI nr
Match: XP_038897087.1 (protein NDR1-like [Benincasa hispida])

HSP 1 Score: 347.1 bits (889), Expect = 1.1e-91
Identity = 171/206 (83.01%), Postives = 177/206 (85.92%), Query Frame = 0


Query: 1   MTESGGCSKCCLKFIITAGFAALFLWLSLRTHKPKCSIEYFYIPALNQSLNTSSNSTLFF 60
           MTESG C  CC KFIIT GFAALFLWLSLRTHKPKCSIE+FYIPALNQSLN+ SNSTL F
Sbjct: 1   MTESGWCCHCCFKFIITTGFAALFLWLSLRTHKPKCSIEFFYIPALNQSLNSPSNSTLLF 60

Query: 61  DLRLKNQNKDKSVYYDPIHINLTLVEPPDGTRRPVANLTVLGFHQGRDKKAFRKETVEAR 120
           DLRLKNQNKDKSVYYD I +NLTLV  PDGTRRPV NLTV GFHQGRDKKAFRKETVEAR
Sbjct: 61  DLRLKNQNKDKSVYYDSISLNLTLVGAPDGTRRPVGNLTVPGFHQGRDKKAFRKETVEAR 120

Query: 121 GVDWKAVSRNGSAVFWLDLATEVRYKILLWKTKRDNLRLGAEVKVNGQGAKEDPRGITLK 180
           GVDWKAVSRNG  V  LD AT VRYKIL WKTKR+NLRLGAEVKVN QG K+ PR ITL 
Sbjct: 121 GVDWKAVSRNGPVVVRLDFATAVRYKILFWKTKRENLRLGAEVKVNRQGEKDYPRSITLN 180

Query: 181 SGAAVPGGSPVRVIWSFWVFVLWNLL 207
           SGAAVP GS +RVIWSFWVFVLW  L
Sbjct: 181 SGAAVPSGSLMRVIWSFWVFVLWKFL 206

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BLAST of Lsi04G012380 vs. NCBI nr
Match: XP_008454544.1 (PREDICTED: protein NDR1-like [Cucumis melo] >KAA0046485.1 protein NDR1-like [Cucumis melo var. makuwa] >TYJ97726.1 protein NDR1-like [Cucumis melo var. makuwa])

HSP 1 Score: 334.0 bits (855), Expect = 9.4e-88
Identity = 166/207 (80.19%), Postives = 179/207 (86.47%), Query Frame = 0


Query: 1   MTESGGCSKCCLKFIITAGFAALFLWLSLRTHKPKCSIEYFYIPALNQSLNTSSNS-TLF 60
           MTESG C KCC KFIITAGFAALFLWLSLRT KPKCSIE FYIPALNQSLN+SSNS TL+
Sbjct: 1   MTESGWCCKCCFKFIITAGFAALFLWLSLRTRKPKCSIESFYIPALNQSLNSSSNSTTLY 60

Query: 61  FDLRLKNQNKDKSVYYDPIHINLTLVEPPDGTRRPVANLTVLGFHQGRDKKAFRKETVEA 120
           FDLRLKNQNKDKSVYYD I++N TL+   D  RRPV NLTV GFHQGRDKKA RKE+VEA
Sbjct: 61  FDLRLKNQNKDKSVYYDTIYLNFTLL---DEARRPVGNLTVPGFHQGRDKKALRKESVEA 120

Query: 121 RGVDWKAVSRNGSAVFWLDLATEVRYKILLWKTKRDNLRLGAEVKVNGQGAKEDPRGITL 180
           RGVDWKAVSRNGS +  LDLAT VRYKILLWKTKR+NLRLG E+KVNGQG K++P GITL
Sbjct: 121 RGVDWKAVSRNGSTIVRLDLATAVRYKILLWKTKRENLRLGTEIKVNGQGLKDNPHGITL 180

Query: 181 KSGAAVPGGSPVRVIWSFWVFVLWNLL 207
            SGAA+PGG+ VRVIWSFWVFV W  L
Sbjct: 181 NSGAAMPGGTLVRVIWSFWVFVWWKFL 204

[Close]

BLAST of Lsi04G012380 vs. NCBI nr
Match: XP_004152027.1 (protein NDR1 [Cucumis sativus] >KAE8650698.1 hypothetical protein Csa_011410 [Cucumis sativus])

HSP 1 Score: 328.6 bits (841), Expect = 4.0e-86
Identity = 164/203 (80.79%), Postives = 176/203 (86.70%), Query Frame = 0


Query: 1   MTESGGCSKCCLKFIITAGFAALFLWLSLRTHKPKCSIEYFYIPALNQSLNTSSNSTLFF 60
           M ESG C KCC KFIITAGF+ALFLWLSLRT KPKCSIE+FYIPALNQSLN+SSNS+L F
Sbjct: 1   MAESGWCCKCCFKFIITAGFSALFLWLSLRTRKPKCSIEFFYIPALNQSLNSSSNSSLIF 60

Query: 61  DLRLKNQNKDKSVYYDPIHINLTLVEPPDGTRRPVANLTVLGFHQGRDKKAFRKETVEAR 120
           DLRLKNQNK+KSVYYD I++NLTL+   D TRR V NLTV GFHQGRDKKA RKE+ EAR
Sbjct: 61  DLRLKNQNKEKSVYYDTIYLNLTLL---DETRRLVGNLTVPGFHQGRDKKALRKESFEAR 120

Query: 121 GVDWKAVSRNGSAVFWLDLATEVRYKILLWKTKRDNLRLGAEVKVNGQGAKEDPRGITLK 180
           GVDWKAVSRNGS V  LDLAT VRYKILLWKTKR+NLRLG EVKVN QG K++P GITL 
Sbjct: 121 GVDWKAVSRNGSTVIRLDLATAVRYKILLWKTKRENLRLGTEVKVNEQGVKDNPHGITLN 180

Query: 181 SGAAVPGGSPVRVIWSFWVFVLW 204
           SGAAVP GS VRVIWSFWVFVLW
Sbjct: 181 SGAAVPVGSLVRVIWSFWVFVLW 200

[Close]

BLAST of Lsi04G012380 vs. NCBI nr
Match: XP_022139632.1 (protein NDR1-like [Momordica charantia])

HSP 1 Score: 322.8 bits (826), Expect = 2.2e-84
Identity = 159/203 (78.33%), Postives = 172/203 (84.73%), Query Frame = 0


Query: 1   MTESGGCSKCCLKFIITAGFAALFLWLSLRTHKPKCSIEYFYIPALNQSLNTSSNSTLFF 60
           MTE+GGC +CC  FI+T+GF ALFLWLSLRTHKPKCSIE FYIPALNQSLN+SS+ST+FF
Sbjct: 1   MTEAGGCGRCCFSFILTSGFTALFLWLSLRTHKPKCSIESFYIPALNQSLNSSSDSTVFF 60

Query: 61  DLRLKNQNKDKSVYYDPIHINLTLVEPPDGTRRPVANLTVLGFHQGRDKKAFRKETVEAR 120
           DLRLKNQNKDKSV+YD I++NLTLV   DG RRPV NLTV GFHQGRDKKAFRK  VEAR
Sbjct: 61  DLRLKNQNKDKSVFYDAINLNLTLV---DGGRRPVGNLTVAGFHQGRDKKAFRKGQVEAR 120

Query: 121 GVDWKAVSRNGSAVFWLDLATEVRYKILLWKTKRDNLRLGAEVKVNGQGAKEDPRGITLK 180
           GVDWKAV RNGSAVF LDLAT VRYKIL WKTKRDNLR+GAEVKVN QGAKE P GITL 
Sbjct: 121 GVDWKAVRRNGSAVFRLDLATAVRYKILFWKTKRDNLRVGAEVKVNAQGAKEYPHGITLS 180

Query: 181 SGAAVPGGSPVRVIWSFWVFVLW 204
           SGAAV G SP   +WS    +LW
Sbjct: 181 SGAAVAGRSPAGALWSVGALILW 200

[Close]

BLAST of Lsi04G012380 vs. NCBI nr
Match: KAG7024897.1 (Protein NDR1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 318.9 bits (816), Expect = 3.1e-83
Identity = 157/206 (76.21%), Postives = 175/206 (84.95%), Query Frame = 0


Query: 1   MTESGGCSKCCLKFIITAGFAALFLWLSLRTHKPKCSIEYFYIPALNQSLNTSSNSTLFF 60
           MTE GGC +CC  FI+T+GFAALFLWLSLRT KPKCSIE+FYIPALNQSLN+  NST+ F
Sbjct: 1   MTEPGGCCRCCFSFILTSGFAALFLWLSLRTRKPKCSIEHFYIPALNQSLNSPLNSTVSF 60

Query: 61  DLRLKNQNKDKSVYYDPIHINLTLV-EPPDGTRRPVANLTVLGFHQGRDKKAFRKETVEA 120
           DLRLKNQNKDKSV+YD +++NLTLV     G+RRP+ N+TV GFHQGR KKAFR ET+E 
Sbjct: 61  DLRLKNQNKDKSVFYDSLNLNLTLVGAAAGGSRRPLGNVTVPGFHQGRGKKAFRNETIET 120

Query: 121 RGVDWKAVSRNGSAVFWLDLATEVRYKILLWKTKRDNLRLGAEVKVNGQGAKEDPRGITL 180
           RGVDWKAVSRNG+AVF LDLAT VR+KIL W TKR+NLR+GAE KVN QGA E P GITL
Sbjct: 121 RGVDWKAVSRNGAAVFRLDLATAVRFKILFWNTKRENLRVGAEFKVNEQGATEYP-GITL 180

Query: 181 KSGAAVPGGSPVRVIWSFWVFVLWNL 206
            SGAAVP GSPVRVIWSFWVFVLW L
Sbjct: 181 SSGAAVPDGSPVRVIWSFWVFVLWKL 205

[Close]

BLAST of Lsi04G012380 vs. TAIR 10
Match: AT3G20600.1 (Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family )

HSP 1 Score: 169.9 bits (429), Expect = 2.2e-42
Identity = 99/211 (46.92%), Postives = 126/211 (59.72%), Query Frame = 0


Query: 2   TESG-GCSKCCLKFIITAGFAALFLWLSLRTHKPKCSIEYFYIPALNQSLNTSSNSTLFF 61
           TE G  C  CCL FI TAG  +LFLWLSLR  KPKCSI+ F+IPAL +  N+  N+TL F
Sbjct: 8   TEGGRNCCTCCLSFIFTAGLTSLFLWLSLRADKPKCSIQNFFIPALGKDPNSRDNTTLNF 67

Query: 62  DLRLKNQNKDKSVYYDPIHINLTLVEPP---DGTRRPVANLTVLGFHQGRDKKAFRKETV 121
            +R  N NKDK +YYD +H+N + +            V N TV  F+QG  KKA +   V
Sbjct: 68  MVRCDNPNKDKGIYYDDVHLNFSTINTTKINSSALVLVGNYTVPKFYQGHKKKAKKWGQV 127

Query: 122 EA--RGVDWKAVSRNGSAVFWLDLATEVRYKILLWKTKRDNLRLGAEVKVNGQGAKEDPR 181
           +        +AV  NGSAVF LDL T+VR+KI+ WKTKR  + +GA+V+VNG G K   +
Sbjct: 128 KPLNNQTVLRAVLPNGSAVFRLDLKTQVRFKIVFWKTKRYGVEVGADVEVNGDGVKAQKK 187

Query: 182 GITLKSGAAVPGGSPVRVIWSFWVFVLWNLL 207
           GI +K         P+R   SF + VL NLL
Sbjct: 188 GIKMKKS---DSSFPLRS--SFPISVLMNLL 213

[Close]

BLAST of Lsi04G012380 vs. TAIR 10
Match: AT3G20590.1 (Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family )

HSP 1 Score: 146.0 bits (367), Expect = 3.4e-35
Identity = 82/180 (45.56%), Postives = 109/180 (60.56%), Query Frame = 0


Query: 7   CSKCCLKFIITAGFAALFLWLSLRTHKPKCSIEYFYIPALNQSLNTSSNSTLFFDLRLKN 66
           C  C  KFI T    AL LWLSLR  KPKCSI+ FYIPAL+++L++  N+TL F +R  N
Sbjct: 14  CCTCFFKFIFTTRLGALILWLSLRAKKPKCSIQNFYIPALSKNLSSRDNTTLNFMVRCDN 73

Query: 67  QNKDKSVYYDPIHINLTLVEPPDGTRRP---VANLTVLGFHQGRDKKAFRKETVEA--RG 126
            NKDK +YYD +H+  + +            VAN TV  F+QG  KKA +   V      
Sbjct: 74  PNKDKGIYYDDVHLTFSTINTTTTNSSDLVLVANYTVPKFYQGHKKKAKKWGQVWPLNNQ 133

Query: 127 VDWKAVSRNGSAVFWLDLATEVRYKILLWKTK-RDNLRLGAEVKVNGQGAKEDPRGITLK 181
              +AV  NGSAVF LDL T VR+KI+ WKTK    +++GA+V+VNG G K + + I ++
Sbjct: 134 TVLRAVLPNGSAVFRLDLKTHVRFKIVFWKTKWYRRIKVGADVEVNGDGVKANEKEIKME 193

[Close]

BLAST of Lsi04G012380 vs. TAIR 10
Match: AT3G20610.1 (non-race specific disease resistance protein, putative )

HSP 1 Score: 121.7 bits (304), Expect = 6.9e-28
Identity = 76/177 (42.94%), Postives = 106/177 (59.89%), Query Frame = 0


Query: 22  ALFLWLS-LRTHKPKCSIEYFYIPALNQSLNTSSNSTLFFDLRLKNQNKDKSVYYDPIHI 81
           AL LWLS L  H P+CSI YFYIPALN+SL +S N+TL F +RLKN N  + +YY+ +H+
Sbjct: 28  ALCLWLSTLVHHIPRCSIHYFYIPALNKSLISSDNTTLNFMVRLKNINAKQGIYYEDLHL 87

Query: 82  NLTLVEPPDGTRRPVANLTVLGFHQGRDKKA--------FRKETVEARGVDWKAVSRNGS 141
           + +     + +   VAN TV  F+QG +KKA        F  +TV       +AV  NGS
Sbjct: 88  SFS--TRINNSSLLVANYTVPRFYQGHEKKAKKWGQALPFNNQTV------IQAVLPNGS 147

Query: 142 AVFWLDLATEVRYKILLWKTKRDNLRLGAEVKVNGQGA---KEDPRGITLKSGAAVP 187
           A+F +DL  +V+YK++ WKTKR  L+    ++VN  GA   K+   GI +K   + P
Sbjct: 148 AIFRVDLKMQVKYKVMSWKTKRYKLKASVNLEVNEDGATKVKDKEDGIKMKISDSSP 196

[Close]

BLAST of Lsi04G012380 vs. TAIR 10
Match: AT4G05220.1 (Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family )

HSP 1 Score: 54.3 bits (129), Expect = 1.3e-07
Identity = 41/171 (23.98%), Postives = 73/171 (42.69%), Query Frame = 0


Query: 11  CLKFIIT---AGFAALFLWLSLRTHKPKCSIEYFYIPALNQSLNTSSNSTLFFDLRLKNQ 70
           C  F++     G  A  LWLSLR H+P+  I+ F +  L+Q      N+ + F++ + N 
Sbjct: 47  CAMFLLVLFFVGVIAFILWLSLRPHRPRFHIQDFVVQGLDQPTGV-ENARIAFNVTILNP 106

Query: 71  NKDKSVYYDPIHINLTLVEPPDGT--------RRPVANLTVLGFHQGRDKKAFRKETVEA 130
           N+   VY+D +  ++   +   G         ++P     V G   G         TV +
Sbjct: 107 NQHMGVYFDSMEGSIYYKDQRVGLIPLLNPFFQQPTNTTIVTGTLTGASL------TVNS 166

Query: 131 -RGVDWKAVSRNGSAVFWLDLATEVRYKILLWKTKRDNLRLGAEVKVNGQG 170
            R  ++      G+  F LD+ + +R+K+  W +K   +     + V   G
Sbjct: 167 NRWTEFSNDRAQGTVGFRLDIVSTIRFKLHRWISKHHRMHANCNIVVGRDG 210

The following BLAST results are available for this feature:

BLAST of Lsi04G012380 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O48915	3.1e-41	46.92	Protein NDR1 OS=Arabidopsis thaliana OX=3702 GN=NDR1 PE=1 SV=1	[more]

BLAST of Lsi04G012380 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TYN2	4.6e-88	80.19	Protein NDR1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1251G0...	[more]
A0A1S3BZM3	4.6e-88	80.19	protein NDR1-like OS=Cucumis melo OX=3656 GN=LOC103494933 PE=4 SV=1	[more]
A0A6J1CEH8	1.1e-84	78.33	protein NDR1-like OS=Momordica charantia OX=3673 GN=LOC111010486 PE=4 SV=1	[more]
A0A6J1F5U5	4.4e-83	75.73	protein NDR1-like OS=Cucurbita moschata OX=3662 GN=LOC111442624 PE=4 SV=1	[more]
A0A6J1IH99	7.1e-81	75.61	protein NDR1-like OS=Cucurbita maxima OX=3661 GN=LOC111476935 PE=4 SV=1	[more]

BLAST of Lsi04G012380 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038897087.1	1.1e-91	83.01	protein NDR1-like [Benincasa hispida]	[more]
XP_008454544.1	9.4e-88	80.19	PREDICTED: protein NDR1-like [Cucumis melo] >KAA0046485.1 protein NDR1-like [Cuc...	[more]
XP_004152027.1	4.0e-86	80.79	protein NDR1 [Cucumis sativus] >KAE8650698.1 hypothetical protein Csa_011410 [Cu...	[more]
XP_022139632.1	2.2e-84	78.33	protein NDR1-like [Momordica charantia]	[more]
KAG7024897.1	3.1e-83	76.21	Protein NDR1, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]

BLAST of Lsi04G012380 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G20600.1	2.2e-42	46.92	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family	[more]
AT3G20590.1	3.4e-35	45.56	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family	[more]
AT3G20610.1	6.9e-28	42.94	non-race specific disease resistance protein, putative	[more]
AT4G05220.1	1.3e-07	23.98	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR31415:SF52	LATE EMBRYOGENESIS ABUNDANT (LEA) HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY-RELATED	coord: 1..185
IPR044839	Protein NDR1-like	PANTHER	PTHR31415	OS05G0367900 PROTEIN	coord: 1..185

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi04G012380.1	Lsi04G012380.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0098542	defense response to other organism
cellular_component	GO:0016021	integral component of membrane