Lsi04G012360 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi04G012360
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
DescriptionTrafficking protein particle complex subunit
Locationchr04: 19215688 .. 19219755 (+)
RNA-Seq ExpressionLsi04G012360
SyntenyLsi04G012360
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTATTTTGAGAAGTTTGTTTCTCTACTCCAAAGCCTTTTGATCCATCATCACCTAGTTCAGTTCTCATCCACTTTCTTCACCGGAACCGCCCTTTCCGTCGGCGTCGACTACACTCTTCGCTTTCCGAATCAATTTCCGTCATCGATCGCCGGAACTGTAAGTCTCCGGACTACACTTAACTACGTTATATTCCTTCATTAGGGTCAAATTCATTTGCTGTAGAGATAGTAATGAAATCCCCAATTTTGATCTCGATCCATGAACACTTCGCAAGGCCCAAACCTTTACTCTTGAGCTACGATGCCGATTTGGGTCATTCAGCCCACAATCTATACAAGACTAACTCTGAATTTCTTCACTTATGTAGCGGCAACCACCACAGCGTCTGCGAAAACTTTCCTTTGTGCTCAGTTCAGAATTCAGATCCATCATGCCTCCCGCTGGTCCTCGATCTGGTGACGCAATCTTCGCTAGTGTTGAGCGAGTGGTAAGCTTCTCAACTACTAGTTTCTCTGTTATTTTATTGTTCCTGCTGTTTAGTTCCTGAGGAATTTTAAGGAAATGTGAGGGAAGAGAGGGGCAAATTGATCCTGCTGTTTAGTTTCTGAGGAATGTTTAGTTCCTGCTGTTTAGTTTCTGAGGAATTTTAAGGAAATGTGAGGGAAGAGAGGGGCAATTTGATCAGATGTATTCAAAGGTGTAAGTTCGTTCGTGATCAAGATGTGTGTTTAATGGAATCGATGAGAAATTACAGTTTTTAGGTCTTTGATTTCATTTCTGTTATTCGGTCATCTTCTATTGATAAGAAGCTAAAGTTGAATTGATGTTAGAATGCGGAGCTGTTTACGTTGACTTATGGGGCGACTGTCCGTCAATTGCTTACAGATCTGGAGGAGGTTGAGGAGGTTAACAAACAGCTCGATCAGATGTAATTTTACTCCACTTCTCGTGCTTTTTGATCAAGTTTCTTTTTCATAACTTAGAATTCTGCTTTGTCCTGAGTGAGACGACTTATGTCTTCTTGTCTGAATTAGCCGTTTAGTTTTGCCTTTGCTTTGTTATTTATTTGGTTATTCATTGACTCTTATCTTTGTGTGAACTCATAGGAATGCTAAGGCAATTAAAGGATGTGTATAACAAAACAGCTATGACCTCTGTAGTATACAAAGTGTTCTACATTACGCAAATTTCTTTATATTCCTTCCATAATAGTCTTGCAGAAGCTTACTTCTTCTCATTGTTATGAAATGTGCTTGAAATTTAGTTTGAGAGTTTAAAATAAGATGCACAAGAACCACTATGGATTGACCTAGTTGTGTTAGGGCATGTACAAAAAATGAAGGAACTTTAGGAGATTATGTTCAAACTTTATAGTTGCCACTAGCTAGGATAAAATCCTACAAGTTTCTTGATAACAAAATATTGTAGAGTGAAAACTGTTGTCCAGGTATGCATGAGAATTATTTTCTCCTATTTGGTTCTTTCGACTTCTGCATGAAAGTTGGTTTTTCATTTAAAAGAAATAGTGTGCATGACGGGCAAATACCAGGCATATTATGTTTTTCAATGCTTCCTATGTTCATTGATAAAATACTAAAAATTCTCTTGTGCTTAAACTTAATGCCCTTGTGATAAGAGCTCTTATGTGGAGCTTGTGGATGCAAAGGAATAGGAGGATTTTCAAAGATAAGTATTTTTCTCTTGAATTTTTTTGAGACTGTTTTCACTCAAATACTTCTTGGTTGTGTCATAGCTATAGTAAATTCTTTTGTAATATTCCTATTTCCTTGATTCTTTTGGATTGCAAGCTATTTGTAAGGAGTTGCTTGGGTGGGGGCTTTCTCATCCCCAAACCCTTAGGGTGTTGGGTTTTGCCTTTTTGAATGAATACTACTTGATGTTTCTTATCCTACAATATTGGAGTCAGACTGATTGATGAGTTTCAGCGATCTGACTGTTTCGTCAATTGTTTTTCAGGGGTTATAATATTGGAATCAGGCTGATTGATGAGTTTCTAGCAAAATCGAATATCTCTAGATGTGTGGACTTCAAAGAGACAGCTGATGTGATTGCAAAGGTAGGCTGTAGTTTAATACATATGCCAAAGTATTTTATTCTTCCTGAAAACCATCATGAGGCTGTCTAAGTAGTGTTCCCTGTCATCTCCCAATCAGAACTTGATTGTCAAACCCTATTCGGTTCAGGAAGCCTCTACTCTGGTCTTGTTAGGTTGAGTCCTATCCTCCAAGCATTTTGGTTTGCCTTGTCCATATGGACACTGCTACTTTTGGTAGTTGGCACCATCTGAAATTTTGACATGCAATTGGGAGGTAGCTTCCGAGTACGGTGTACAAATTCTGATGCAATTGGCTTTTTGCAGTTAGCTAGAGTGGATCTATCATGTCCATTAGAATTTTTTATACCATTGGATTTCATGGTCATGGCTTAATTATGAAACAGGATTTCTCTTATATGCCGGATTTTGATAATAATGTTAGACGTTCGGTGCATTTTACATATGAGTGTGGTCCTTACTTTGTAATAACAGACAAAAATTGAAGTTTTTATTGGGGGGTCTGTCAAGGGGATGGTAGATATGTTAGATAGTAGTGGTGCCCCTGAGTAGGCATTTGGGTTTATCTGGTATTTTGGCCTACAATATACTCTGGGAAATGAAAGTTCGAGGCCTTTTGAAGCGTGGGGATCTTAACTTATTTTCCATTTTTAATAGGTTGGTTTAAAAATGTTTTTGGGAGTGAATGCAACGGTGACCAACTGGGATGCTGATGGCACATGCTGCAGCATTGTTCTGGAGGACAATCCATTAGTGGACTTTGTTGAGCTTCCTGATACTTGCCAAGGTCTCCATTACTGCAACATCTTAAGTGGAGTAATTAGAGGAGCACTTGAGATGGTGAGTTCTCTGCATATATATTTTTTTAAAGCCTGCTTATTAGCGTAATGAGAAGCACAAGTACAGATACGAGACACATATGTGATATAGACATGGACACTTGCATTTATTAACATATATCATTTTTGTACAACAAGTATATACATTTGTATACTTAAAAAAAAATGAGTTTATGCATTTTGCTCTGAAAATTTATTAAGTATATTCGATACATTTTTAATAAATGTTGGACCTACATTGATTTTGTACCATTAGTGTCTAACACATACATTGTGCTAACAAAGCACCCAATACATTTCCAACTATCGGACATGTGCCAAAGACGGACATGCTAGGCAAACTAAAGTATTTGTTCTTCTTAGTCATCATTGTGGCTATTCTAGATTTTATTCCTTTCCAAAGATATATTCAATATAGGTTAAGGAATATATTCAATACATAATTGAAATTTCAGAGATCTATTGATATAAAATATAAAATTTGAAAGTTCAAGGACCATTAGATACTTTTAAAAGTTGAAGGACTCGTTGAACACAAAATTAAAACCTCATAGCTTATTTAGACACTTTTTAAAATTCAAAGGTCAAATAGACATACACCTAGAAGTTTAGGGACTGAACATACAATTTAACCACACTTTTTCCTTAATTAAATTTGGAGGTATGAATTTTGTTTATTTTTCTGATTGTGATATGGTGTTTGGATCAGGTGTCCATGAAAACAGAAGTAACATGGCTACGCGACATGCTGAGAGGAGATGACAGCTTCGAATTACAAGTAAAATTGCTGAAGCAAGTCCCTGAAGAGTACCCTTACAAAGACGATGAATAAACTCTTCCACCAGAATAACTCTTTAGTTTCATGTCATTTGCTTCTGTTTTTTATTTCTCTGCTCTGTTAATTTGGTCCAAAAAAGATAGTTACATTTCTAATTCCTTCAACTATCTAACATCTTAATCAATGTTATATTATATACACTCTTTTGCTGTTGTGATGGATTAAAGCGGATGTATATAGTAAAAAATTAAGAGGAAATAAGTCCATGGCGGAGCTACGTAGGATTTTACTATTCTATCAGTAGAGATGTGTGTGCAGGGCTCTGTCGAAACACATCACACTTATGGTAGTAAGAAAAGGAAGAGGTTTTTTT

mRNA sequence

ATGTTCTCATCCACTTTCTTCACCGGAACCGCCCTTTCCGTCGGCGTCGACTACACTCTTCGCTTTCCGAATCAATTTCCGTCATCGATCGCCGGAACTCGGCAACCACCACAGCGTCTGCGAAAACTTTCCTTTGTGCTCAGTTCAGAATTCAGATCCATCATGCCTCCCGCTGGTCCTCGATCTGGTGACGCAATCTTCGCTAGTGTTGAGCGAGTGAATGCGGAGCTGTTTACGTTGACTTATGGGGCGACTGTCCGTCAATTGCTTACAGATCTGGAGGAGGTTGAGGAGGTTAACAAACAGCTCGATCAGATGGGTTATAATATTGGAATCAGGCTGATTGATGAGTTTCTAGCAAAATCGAATATCTCTAGATGTGTGGACTTCAAAGAGACAGCTGATGTGATTGCAAAGGTTGGTTTAAAAATGTTTTTGGGAGTGAATGCAACGGTGACCAACTGGGATGCTGATGGCACATGCTGCAGCATTGTTCTGGAGGACAATCCATTAGTGGACTTTGTTGAGCTTCCTGATACTTGCCAAGGTCTCCATTACTGCAACATCTTAAGTGGAGTGTCCATGAAAACAGAAGTAACATGGCTACGCGACATGCTGAGAGGAGATGACAGCTTCGAATTACAAGTAAAATTGCTGAAGCAAGTCCCTGAAGAGTACCCTTACAAAGACGATGAATAAACTCTTCCACCAGAATAACTCTTTAGTTTCATGTCATTTGCTTCTGTTTTTTATTTCTCTGCTCTGTTAATTTGGTCCAAAAAAGATAGTTACATTTCTAATTCCTTCAACTATCTAACATCTTAATCAATGTTATATTATATACACTCTTTTGCTGTTGTGATGGATTAAAGCGGATGTATATAGTAAAAAATTAAGAGGAAATAAGTCCATGGCGGAGCTACGTAGGATTTTACTATTCTATCAGTAGAGATGTGTGTGCAGGGCTCTGTCGAAACACATCACACTTATGGTAGTAAGAAAAGGAAGAGGTTTTTTT

Coding sequence (CDS)

ATGTTCTCATCCACTTTCTTCACCGGAACCGCCCTTTCCGTCGGCGTCGACTACACTCTTCGCTTTCCGAATCAATTTCCGTCATCGATCGCCGGAACTCGGCAACCACCACAGCGTCTGCGAAAACTTTCCTTTGTGCTCAGTTCAGAATTCAGATCCATCATGCCTCCCGCTGGTCCTCGATCTGGTGACGCAATCTTCGCTAGTGTTGAGCGAGTGAATGCGGAGCTGTTTACGTTGACTTATGGGGCGACTGTCCGTCAATTGCTTACAGATCTGGAGGAGGTTGAGGAGGTTAACAAACAGCTCGATCAGATGGGTTATAATATTGGAATCAGGCTGATTGATGAGTTTCTAGCAAAATCGAATATCTCTAGATGTGTGGACTTCAAAGAGACAGCTGATGTGATTGCAAAGGTTGGTTTAAAAATGTTTTTGGGAGTGAATGCAACGGTGACCAACTGGGATGCTGATGGCACATGCTGCAGCATTGTTCTGGAGGACAATCCATTAGTGGACTTTGTTGAGCTTCCTGATACTTGCCAAGGTCTCCATTACTGCAACATCTTAAGTGGAGTGTCCATGAAAACAGAAGTAACATGGCTACGCGACATGCTGAGAGGAGATGACAGCTTCGAATTACAAGTAAAATTGCTGAAGCAAGTCCCTGAAGAGTACCCTTACAAAGACGATGAATAA

Protein sequence

MFSSTFFTGTALSVGVDYTLRFPNQFPSSIAGTRQPPQRLRKLSFVLSSEFRSIMPPAGPRSGDAIFASVERVNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRLIDEFLAKSNISRCVDFKETADVIAKVGLKMFLGVNATVTNWDADGTCCSIVLEDNPLVDFVELPDTCQGLHYCNILSGVSMKTEVTWLRDMLRGDDSFELQVKLLKQVPEEYPYKDDE
Homology
[Close]
BLAST of Lsi04G012360 vs. ExPASy Swiss-Prot
Match: Q5ZI57 (Trafficking protein particle complex subunit 3 OS=Gallus gallus OX=9031 GN=TRAPPC3 PE=2 SV=1)

HSP 1 Score: 181.0 bits (458), Expect = 1.5e-44
Identity = 85/165 (51.52%), Postives = 119/165 (72.12%), Query Frame = 0 

Query: 71  ERVNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRLIDEFLAKSNISRCVDF 130
           +++N+ELFTLTYGA V QL  D E  E+VNKQLD+MGYNIG+RLI++FLA+SN+ RC DF
Sbjct: 12  KKMNSELFTLTYGALVTQLCKDYENDEDVNKQLDKMGYNIGVRLIEDFLARSNVGRCHDF 71

Query: 131 KETADVIAKVGLKMFLGVNATVTNWDADGTCCSIVLEDNPLVDFVELPDTCQGLHYCNIL 190
           +ETADVIAK+  KM+LG+  ++TNW   G   S++LE+NPLVDFVELPD    L Y N+L
Sbjct: 72  RETADVIAKIAFKMYLGITPSITNWSPGGDEFSLILENNPLVDFVELPDNHSSLIYSNLL 131

Query: 191 SG--------VSMKTEVTWLRDMLRGDDSFELQVKLLKQVPEEYP 228
            G        V M  +V +++D L+GD   E+++K ++++ +  P
Sbjct: 132 CGVLRGALEMVQMAVDVKFVQDTLKGDSVTEIRMKFIRRIEDNLP 176

[Close]
BLAST of Lsi04G012360 vs. ExPASy Swiss-Prot
Match: Q86K94 (Trafficking protein particle complex subunit 3 OS=Dictyostelium discoideum OX=44689 GN=trappc3 PE=3 SV=2)

HSP 1 Score: 178.3 bits (451), Expect = 9.8e-44
Identity = 94/174 (54.02%), Postives = 124/174 (71.26%), Query Frame = 0 

Query: 63  GDAIFASVERVNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRLIDEFLAKS 122
           G+ +F  VE++N+ELFTLTYGA V QL+ D E++E+VN +L+QMGYNIGIRLI+EFLAKS
Sbjct: 9   GNDVFNKVEKINSELFTLTYGALVTQLIKDYEDIEQVNIKLEQMGYNIGIRLIEEFLAKS 68

Query: 123 NISRCVDFKETADVIAKVGLKMFLGVNATVTNWDADGTCCSIVLEDNPLVDFVELPDTCQ 182
            I RC DF ETA+VIAKVG KMFLGVNA V +WDA+     + +EDNPL+DFVELPD  +
Sbjct: 69  GIGRCSDFIETAEVIAKVGFKMFLGVNAHVGDWDANRKEFHLTIEDNPLIDFVELPDQYK 128

Query: 183 -GLHYCNILSG--------VSMKTEVTWLRDMLRGDDSFELQVKLLKQVPEEYP 228
             L+Y NIL G        V MK + T+++  L  D + E++V L + + +  P
Sbjct: 129 HKLYYSNILCGVMRGALEMVQMKVKCTFVKCTLSDDSTSEIKVVLEEVLSDMIP 182

[Close]
BLAST of Lsi04G012360 vs. ExPASy Swiss-Prot
Match: O55013 (Trafficking protein particle complex subunit 3 OS=Mus musculus OX=10090 GN=Trappc3 PE=1 SV=1)

HSP 1 Score: 177.2 bits (448), Expect = 2.2e-43
Identity = 84/165 (50.91%), Postives = 118/165 (71.52%), Query Frame = 0 

Query: 71  ERVNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRLIDEFLAKSNISRCVDF 130
           +++++ELFTLTYGA V QL  D E  E+VNKQLD+MGYNIG+RLI++FLA+SN+ RC DF
Sbjct: 12  KKMSSELFTLTYGALVTQLCKDYENDEDVNKQLDRMGYNIGVRLIEDFLARSNVGRCHDF 71

Query: 131 KETADVIAKVGLKMFLGVNATVTNWDADGTCCSIVLEDNPLVDFVELPDTCQGLHYCNIL 190
           +ETADVIAKV  KM+LG+  ++TNW   G   S++LE+NPLVDFVELPD    L Y N+L
Sbjct: 72  RETADVIAKVAFKMYLGITPSITNWSPAGDEFSLILENNPLVDFVELPDNHSALIYSNLL 131

Query: 191 SG--------VSMKTEVTWLRDMLRGDDSFELQVKLLKQVPEEYP 228
            G        V M  E  +++D L+GD   E++++ ++++ +  P
Sbjct: 132 CGVLRGALEMVQMAVEAKFVQDTLKGDGVTEIRMRFIRRIEDNLP 176

[Close]
BLAST of Lsi04G012360 vs. ExPASy Swiss-Prot
Match: Q5U1Z2 (Trafficking protein particle complex subunit 3 OS=Rattus norvegicus OX=10116 GN=Trappc3 PE=2 SV=1)

HSP 1 Score: 177.2 bits (448), Expect = 2.2e-43
Identity = 84/165 (50.91%), Postives = 118/165 (71.52%), Query Frame = 0 

Query: 71  ERVNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRLIDEFLAKSNISRCVDF 130
           +++++ELFTLTYGA V QL  D E  E+VNKQLD+MGYNIG+RLI++FLA+SN+ RC DF
Sbjct: 12  KKMSSELFTLTYGALVTQLCKDYENDEDVNKQLDRMGYNIGVRLIEDFLARSNVGRCHDF 71

Query: 131 KETADVIAKVGLKMFLGVNATVTNWDADGTCCSIVLEDNPLVDFVELPDTCQGLHYCNIL 190
           +ETADVIAKV  KM+LG+  ++TNW   G   S++LE+NPLVDFVELPD    L Y N+L
Sbjct: 72  RETADVIAKVAFKMYLGITPSITNWSPAGDEFSLILENNPLVDFVELPDNHSALIYSNLL 131

Query: 191 SG--------VSMKTEVTWLRDMLRGDDSFELQVKLLKQVPEEYP 228
            G        V M  E  +++D L+GD   E++++ ++++ +  P
Sbjct: 132 CGVLRGALEMVQMAVEAKFVQDTLKGDGVTEIRMRFIRRIEDNLP 176

[Close]
BLAST of Lsi04G012360 vs. ExPASy Swiss-Prot
Match: O43617 (Trafficking protein particle complex subunit 3 OS=Homo sapiens OX=9606 GN=TRAPPC3 PE=1 SV=1)

HSP 1 Score: 175.6 bits (444), Expect = 6.4e-43
Identity = 83/165 (50.30%), Postives = 118/165 (71.52%), Query Frame = 0 

Query: 71  ERVNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRLIDEFLAKSNISRCVDF 130
           +++++ELFTLTYGA V QL  D E  E+VNKQLD+MG+NIG+RLI++FLA+SN+ RC DF
Sbjct: 12  KKMSSELFTLTYGALVTQLCKDYENDEDVNKQLDKMGFNIGVRLIEDFLARSNVGRCHDF 71

Query: 131 KETADVIAKVGLKMFLGVNATVTNWDADGTCCSIVLEDNPLVDFVELPDTCQGLHYCNIL 190
           +ETADVIAKV  KM+LG+  ++TNW   G   S++LE+NPLVDFVELPD    L Y N+L
Sbjct: 72  RETADVIAKVAFKMYLGITPSITNWSPAGDEFSLILENNPLVDFVELPDNHSSLIYSNLL 131

Query: 191 SG--------VSMKTEVTWLRDMLRGDDSFELQVKLLKQVPEEYP 228
            G        V M  E  +++D L+GD   E++++ ++++ +  P
Sbjct: 132 CGVLRGALEMVQMAVEAKFVQDTLKGDGVTEIRMRFIRRIEDNLP 176

[Close]
BLAST of Lsi04G012360 vs. ExPASy TrEMBL
Match: A0A6J1FT71 (Trafficking protein particle complex subunit OS=Cucurbita moschata OX=3662 GN=LOC111446643 PE=3 SV=1)

HSP 1 Score: 352.4 bits (903), Expect = 1.4e-93
Identity = 175/186 (94.09%), Postives = 177/186 (95.16%), Query Frame = 0 

Query: 55  MPPAGPRSGDAIFASVERVNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRL 114
           MPPAGPRSGDAIFASVERVNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRL
Sbjct: 1   MPPAGPRSGDAIFASVERVNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRL 60

Query: 115 IDEFLAKSNISRCVDFKETADVIAKVGLKMFLGVNATVTNWDADGTCCSIVLEDNPLVDF 174
           IDEFLAKSNISRCVDFKETADVIAKVGLKMFLGVNATVTNWDA+GTCCSIVLEDNPLVDF
Sbjct: 61  IDEFLAKSNISRCVDFKETADVIAKVGLKMFLGVNATVTNWDAEGTCCSIVLEDNPLVDF 120

Query: 175 VELPDTCQGLHYCNILSG--------VSMKTEVTWLRDMLRGDDSFELQVKLLKQVPEEY 233
           VELPDTCQGLHYCNILSG        VSMKTEVTWLRDMLRGDD FELQVKLLKQ+PEEY
Sbjct: 121 VELPDTCQGLHYCNILSGVIRGALEMVSMKTEVTWLRDMLRGDDMFELQVKLLKQIPEEY 180

[Close]
BLAST of Lsi04G012360 vs. ExPASy TrEMBL
Match: A0A6J1J2K9 (Trafficking protein particle complex subunit OS=Cucurbita maxima OX=3661 GN=LOC111480683 PE=3 SV=1)

HSP 1 Score: 352.1 bits (902), Expect = 1.8e-93
Identity = 174/186 (93.55%), Postives = 177/186 (95.16%), Query Frame = 0 

Query: 55  MPPAGPRSGDAIFASVERVNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRL 114
           MPPAGPRSGDAIFASVERVNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRL
Sbjct: 1   MPPAGPRSGDAIFASVERVNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRL 60

Query: 115 IDEFLAKSNISRCVDFKETADVIAKVGLKMFLGVNATVTNWDADGTCCSIVLEDNPLVDF 174
           IDEFLAKSNISRCVDFKETADVIAKVGLKMFLGVNATVTNWDA+GTCCSI+LEDNPLVDF
Sbjct: 61  IDEFLAKSNISRCVDFKETADVIAKVGLKMFLGVNATVTNWDAEGTCCSIILEDNPLVDF 120

Query: 175 VELPDTCQGLHYCNILSG--------VSMKTEVTWLRDMLRGDDSFELQVKLLKQVPEEY 233
           VELPDTCQGLHYCNILSG        VSMKTEVTWLRDMLRGDD FELQVKLLKQ+PEEY
Sbjct: 121 VELPDTCQGLHYCNILSGVIRGALEMVSMKTEVTWLRDMLRGDDMFELQVKLLKQIPEEY 180

[Close]
BLAST of Lsi04G012360 vs. ExPASy TrEMBL
Match: A0A6J1CFG3 (Trafficking protein particle complex subunit OS=Momordica charantia OX=3673 GN=LOC111010320 PE=3 SV=1)

HSP 1 Score: 352.1 bits (902), Expect = 1.8e-93
Identity = 175/186 (94.09%), Postives = 178/186 (95.70%), Query Frame = 0 

Query: 55  MPPAGPRSGDAIFASVERVNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRL 114
           MPPAGPRSGDAIFASVERVNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRL
Sbjct: 1   MPPAGPRSGDAIFASVERVNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRL 60

Query: 115 IDEFLAKSNISRCVDFKETADVIAKVGLKMFLGVNATVTNWDADGTCCSIVLEDNPLVDF 174
           IDEFLAKSNISRCVDFKETA+VIAKVGLKMFLGVNATVTNWDA+GTCCSIVLEDNPLVDF
Sbjct: 61  IDEFLAKSNISRCVDFKETAEVIAKVGLKMFLGVNATVTNWDAEGTCCSIVLEDNPLVDF 120

Query: 175 VELPDTCQGLHYCNILSG--------VSMKTEVTWLRDMLRGDDSFELQVKLLKQVPEEY 233
           VELPDTCQGLHYCNILSG        VSMKTEVTWLRDMLRGDD+FELQVKLLKQVPEEY
Sbjct: 121 VELPDTCQGLHYCNILSGVIRGALEMVSMKTEVTWLRDMLRGDDTFELQVKLLKQVPEEY 180

[Close]
BLAST of Lsi04G012360 vs. ExPASy TrEMBL
Match: A0A5A7TX50 (Trafficking protein particle complex subunit OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1251G00240 PE=3 SV=1)

HSP 1 Score: 351.7 bits (901), Expect = 2.4e-93
Identity = 176/186 (94.62%), Postives = 177/186 (95.16%), Query Frame = 0 

Query: 55  MPPAGPRSGDAIFASVERVNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRL 114
           MP AGPRSGDAIFASVERVNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRL
Sbjct: 1   MPTAGPRSGDAIFASVERVNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRL 60

Query: 115 IDEFLAKSNISRCVDFKETADVIAKVGLKMFLGVNATVTNWDADGTCCSIVLEDNPLVDF 174
           IDEFLAKSNISRCVDFKETADVIAKVGLKMFLGVNATVTNWDA+GTCCSIVLEDNPLVDF
Sbjct: 61  IDEFLAKSNISRCVDFKETADVIAKVGLKMFLGVNATVTNWDAEGTCCSIVLEDNPLVDF 120

Query: 175 VELPDTCQGLHYCNILSG--------VSMKTEVTWLRDMLRGDDSFELQVKLLKQVPEEY 233
           VELPDTCQGLHYCNILSG        VSMKTEVTWLRDMLRGDDSFELQVKLLKQVPEEY
Sbjct: 121 VELPDTCQGLHYCNILSGVIRGALEMVSMKTEVTWLRDMLRGDDSFELQVKLLKQVPEEY 180

[Close]
BLAST of Lsi04G012360 vs. ExPASy TrEMBL
Match: A0A0A0LAM3 (Trafficking protein particle complex subunit OS=Cucumis sativus OX=3659 GN=Csa_3G419290 PE=3 SV=1)

HSP 1 Score: 351.7 bits (901), Expect = 2.4e-93
Identity = 176/186 (94.62%), Postives = 177/186 (95.16%), Query Frame = 0 

Query: 55  MPPAGPRSGDAIFASVERVNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRL 114
           MP AGPRSGDAIFASVERVNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRL
Sbjct: 1   MPTAGPRSGDAIFASVERVNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRL 60

Query: 115 IDEFLAKSNISRCVDFKETADVIAKVGLKMFLGVNATVTNWDADGTCCSIVLEDNPLVDF 174
           IDEFLAKSNISRCVDFKETADVIAKVGLKMFLGVNATVTNWDA+GTCCSIVLEDNPLVDF
Sbjct: 61  IDEFLAKSNISRCVDFKETADVIAKVGLKMFLGVNATVTNWDAEGTCCSIVLEDNPLVDF 120

Query: 175 VELPDTCQGLHYCNILSG--------VSMKTEVTWLRDMLRGDDSFELQVKLLKQVPEEY 233
           VELPDTCQGLHYCNILSG        VSMKTEVTWLRDMLRGDDSFELQVKLLKQVPEEY
Sbjct: 121 VELPDTCQGLHYCNILSGVIRGALEMVSMKTEVTWLRDMLRGDDSFELQVKLLKQVPEEY 180

[Close]
BLAST of Lsi04G012360 vs. NCBI nr
Match: KAG6592023.1 (Trafficking protein particle complex subunit 3, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 401.0 bits (1029), Expect = 7.1e-108
Identity = 207/239 (86.61%), Postives = 214/239 (89.54%), Query Frame = 0 

Query: 2   FSSTFFTGTALSVGVDYTLRFPNQFPSSIAGTRQPPQRLRKLSFVLSSEFRSIMPPAGPR 61
           FSST   GTA++VGV +TLR   Q PSSIAGTRQP +RL K SF    EF SIMP AGPR
Sbjct: 28  FSSTSHIGTAITVGVGHTLRSRYQLPSSIAGTRQPAKRLPKRSF----EFISIMPTAGPR 87

Query: 62  SGDAIFASVERVNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRLIDEFLAK 121
           SGDAIFASVERVNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRLIDEFLAK
Sbjct: 88  SGDAIFASVERVNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRLIDEFLAK 147

Query: 122 SNISRCVDFKETADVIAKVGLKMFLGVNATVTNWDADGTCCSIVLEDNPLVDFVELPDTC 181
           SNISRCVDFKETADVIAK+GLKMFLGVNATVTNWDA+GTCCSIVLEDNPLVDFVELPDTC
Sbjct: 148 SNISRCVDFKETADVIAKIGLKMFLGVNATVTNWDAEGTCCSIVLEDNPLVDFVELPDTC 207

Query: 182 QGLHYCNILSG--------VSMKTEVTWLRDMLRGDDSFELQVKLLKQVPEEYPYKDDE 233
           QGLHYCNILSG        VSMKTEVTWLRDMLRGDDSFELQVKLLKQ+PEEYPYKDDE
Sbjct: 208 QGLHYCNILSGVIRGALEMVSMKTEVTWLRDMLRGDDSFELQVKLLKQIPEEYPYKDDE 262

[Close]
BLAST of Lsi04G012360 vs. NCBI nr
Match: KAG6607818.1 (Trafficking protein particle complex subunit 3, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 377.5 bits (968), Expect = 8.4e-101
Identity = 190/207 (91.79%), Postives = 193/207 (93.24%), Query Frame = 0 

Query: 34  RQPPQRLRKLSFVLSSEFRSIMPPAGPRSGDAIFASVERVNAELFTLTYGATVRQLLTDL 93
           RQP QRL KLSF LSSEF SIMPPAGPRSGDAIFASVERVNAELFTLTYGATVRQLLTDL
Sbjct: 27  RQPAQRLVKLSFELSSEFGSIMPPAGPRSGDAIFASVERVNAELFTLTYGATVRQLLTDL 86

Query: 94  EEVEEVNKQLDQMGYNIGIRLIDEFLAKSNISRCVDFKETADVIAKVGLKMFLGVNATVT 153
           EEVEEVNKQLDQMGYNIGIRLIDEFLAKSNISRCVDFKETADVIAKVGLKMFLGVNA+VT
Sbjct: 87  EEVEEVNKQLDQMGYNIGIRLIDEFLAKSNISRCVDFKETADVIAKVGLKMFLGVNASVT 146

Query: 154 NWDADGTCCSIVLEDNPLVDFVELPDTCQGLHYCNILSG--------VSMKTEVTWLRDM 213
           NWD +GTCCSIVLEDNPLVDFVELPDTCQGLHYCNILSG        VSMKTEVTWLRDM
Sbjct: 147 NWDTEGTCCSIVLEDNPLVDFVELPDTCQGLHYCNILSGVIRGALEMVSMKTEVTWLRDM 206

Query: 214 LRGDDSFELQVKLLKQVPEEYPYKDDE 233
           LRGDD FELQVKLLKQ+PEEYPYKDDE
Sbjct: 207 LRGDDMFELQVKLLKQIPEEYPYKDDE 233

[Close]
BLAST of Lsi04G012360 vs. NCBI nr
Match: XP_038896395.1 (trafficking protein particle complex subunit 3 [Benincasa hispida])

HSP 1 Score: 354.8 bits (909), Expect = 5.8e-94
Identity = 177/186 (95.16%), Postives = 178/186 (95.70%), Query Frame = 0 

Query: 55  MPPAGPRSGDAIFASVERVNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRL 114
           MPPAGPRSGDAIFASVERVNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRL
Sbjct: 1   MPPAGPRSGDAIFASVERVNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRL 60

Query: 115 IDEFLAKSNISRCVDFKETADVIAKVGLKMFLGVNATVTNWDADGTCCSIVLEDNPLVDF 174
           IDEFLAKSNISRCVDFKETADVIAKVGLKMFLGVNATVTNWDA+GTCCSIVLEDNPLVDF
Sbjct: 61  IDEFLAKSNISRCVDFKETADVIAKVGLKMFLGVNATVTNWDAEGTCCSIVLEDNPLVDF 120

Query: 175 VELPDTCQGLHYCNILSG--------VSMKTEVTWLRDMLRGDDSFELQVKLLKQVPEEY 233
           VELPDTCQGLHYCNILSG        VSMKTEVTWLRDMLRGDDSFELQVKLLKQVPEEY
Sbjct: 121 VELPDTCQGLHYCNILSGVIRGALEMVSMKTEVTWLRDMLRGDDSFELQVKLLKQVPEEY 180

[Close]
BLAST of Lsi04G012360 vs. NCBI nr
Match: XP_022941300.1 (trafficking protein particle complex subunit 3-like [Cucurbita moschata])

HSP 1 Score: 352.4 bits (903), Expect = 2.9e-93
Identity = 175/186 (94.09%), Postives = 177/186 (95.16%), Query Frame = 0 

Query: 55  MPPAGPRSGDAIFASVERVNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRL 114
           MPPAGPRSGDAIFASVERVNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRL
Sbjct: 1   MPPAGPRSGDAIFASVERVNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRL 60

Query: 115 IDEFLAKSNISRCVDFKETADVIAKVGLKMFLGVNATVTNWDADGTCCSIVLEDNPLVDF 174
           IDEFLAKSNISRCVDFKETADVIAKVGLKMFLGVNATVTNWDA+GTCCSIVLEDNPLVDF
Sbjct: 61  IDEFLAKSNISRCVDFKETADVIAKVGLKMFLGVNATVTNWDAEGTCCSIVLEDNPLVDF 120

Query: 175 VELPDTCQGLHYCNILSG--------VSMKTEVTWLRDMLRGDDSFELQVKLLKQVPEEY 233
           VELPDTCQGLHYCNILSG        VSMKTEVTWLRDMLRGDD FELQVKLLKQ+PEEY
Sbjct: 121 VELPDTCQGLHYCNILSGVIRGALEMVSMKTEVTWLRDMLRGDDMFELQVKLLKQIPEEY 180

[Close]
BLAST of Lsi04G012360 vs. NCBI nr
Match: XP_022139368.1 (trafficking protein particle complex subunit 3 [Momordica charantia])

HSP 1 Score: 352.1 bits (902), Expect = 3.8e-93
Identity = 175/186 (94.09%), Postives = 178/186 (95.70%), Query Frame = 0 

Query: 55  MPPAGPRSGDAIFASVERVNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRL 114
           MPPAGPRSGDAIFASVERVNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRL
Sbjct: 1   MPPAGPRSGDAIFASVERVNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRL 60

Query: 115 IDEFLAKSNISRCVDFKETADVIAKVGLKMFLGVNATVTNWDADGTCCSIVLEDNPLVDF 174
           IDEFLAKSNISRCVDFKETA+VIAKVGLKMFLGVNATVTNWDA+GTCCSIVLEDNPLVDF
Sbjct: 61  IDEFLAKSNISRCVDFKETAEVIAKVGLKMFLGVNATVTNWDAEGTCCSIVLEDNPLVDF 120

Query: 175 VELPDTCQGLHYCNILSG--------VSMKTEVTWLRDMLRGDDSFELQVKLLKQVPEEY 233
           VELPDTCQGLHYCNILSG        VSMKTEVTWLRDMLRGDD+FELQVKLLKQVPEEY
Sbjct: 121 VELPDTCQGLHYCNILSGVIRGALEMVSMKTEVTWLRDMLRGDDTFELQVKLLKQVPEEY 180

[Close]
BLAST of Lsi04G012360 vs. TAIR 10
Match: AT5G54750.1 (Transport protein particle (TRAPP) component )

HSP 1 Score: 320.9 bits (821), Expect = 8.7e-88
Identity = 155/186 (83.33%), Postives = 170/186 (91.40%), Query Frame = 0 

Query: 55  MPPAGPRSGDAIFASVERVNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRL 114
           M P GPRSGDAIF+S++RVNAELFTLTYGA VRQLLTDLEEVEEVNKQLDQMGYNIGIRL
Sbjct: 1   MAPVGPRSGDAIFSSIDRVNAELFTLTYGAIVRQLLTDLEEVEEVNKQLDQMGYNIGIRL 60

Query: 115 IDEFLAKSNISRCVDFKETADVIAKVGLKMFLGVNATVTNWDADGTCCSIVLEDNPLVDF 174
           IDEFLAKS +SRCVDFKETA++IAKVG KMFLGV A+VT+WD+DGTCCSI+LEDNPLVDF
Sbjct: 61  IDEFLAKSGVSRCVDFKETAEMIAKVGFKMFLGVTASVTSWDSDGTCCSIILEDNPLVDF 120

Query: 175 VELPDTCQGLHYCNILSG--------VSMKTEVTWLRDMLRGDDSFELQVKLLKQVPEEY 233
           VELPDTCQGL+YCN+LSG        VSMKTEVTW RD+LRGDD++ELQVKLLKQV EEY
Sbjct: 121 VELPDTCQGLYYCNVLSGVIRGALEMVSMKTEVTWTRDVLRGDDAYELQVKLLKQVAEEY 180

[Close]
BLAST of Lsi04G012360 vs. TAIR 10
Match: AT5G54750.2 (Transport protein particle (TRAPP) component )

HSP 1 Score: 311.6 bits (797), Expect = 5.3e-85
Identity = 155/199 (77.89%), Postives = 170/199 (85.43%), Query Frame = 0 

Query: 55  MPPAGPRSGDAIFASVERVNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQM-------- 114
           M P GPRSGDAIF+S++RVNAELFTLTYGA VRQLLTDLEEVEEVNKQLDQM        
Sbjct: 1   MAPVGPRSGDAIFSSIDRVNAELFTLTYGAIVRQLLTDLEEVEEVNKQLDQMYSSSTIYV 60

Query: 115 -----GYNIGIRLIDEFLAKSNISRCVDFKETADVIAKVGLKMFLGVNATVTNWDADGTC 174
                GYNIGIRLIDEFLAKS +SRCVDFKETA++IAKVG KMFLGV A+VT+WD+DGTC
Sbjct: 61  DSLPWGYNIGIRLIDEFLAKSGVSRCVDFKETAEMIAKVGFKMFLGVTASVTSWDSDGTC 120

Query: 175 CSIVLEDNPLVDFVELPDTCQGLHYCNILSG--------VSMKTEVTWLRDMLRGDDSFE 233
           CSI+LEDNPLVDFVELPDTCQGL+YCN+LSG        VSMKTEVTW RD+LRGDD++E
Sbjct: 121 CSIILEDNPLVDFVELPDTCQGLYYCNVLSGVIRGALEMVSMKTEVTWTRDVLRGDDAYE 180

The following BLAST results are available for this feature:
BLAST of Lsi04G012360 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q5ZI571.5e-4451.52Trafficking protein particle complex subunit 3 OS=Gallus gallus OX=9031 GN=TRAPP... [more]
Q86K949.8e-4454.02Trafficking protein particle complex subunit 3 OS=Dictyostelium discoideum OX=44... [more]
O550132.2e-4350.91Trafficking protein particle complex subunit 3 OS=Mus musculus OX=10090 GN=Trapp... [more]
Q5U1Z22.2e-4350.91Trafficking protein particle complex subunit 3 OS=Rattus norvegicus OX=10116 GN=... [more]
O436176.4e-4350.30Trafficking protein particle complex subunit 3 OS=Homo sapiens OX=9606 GN=TRAPPC... [more]
BLAST of Lsi04G012360 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1FT711.4e-9394.09Trafficking protein particle complex subunit OS=Cucurbita moschata OX=3662 GN=LO... [more]
A0A6J1J2K91.8e-9393.55Trafficking protein particle complex subunit OS=Cucurbita maxima OX=3661 GN=LOC1... [more]
A0A6J1CFG31.8e-9394.09Trafficking protein particle complex subunit OS=Momordica charantia OX=3673 GN=L... [more]
A0A5A7TX502.4e-9394.62Trafficking protein particle complex subunit OS=Cucumis melo var. makuwa OX=1194... [more]
A0A0A0LAM32.4e-9394.62Trafficking protein particle complex subunit OS=Cucumis sativus OX=3659 GN=Csa_3... [more]
BLAST of Lsi04G012360 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6592023.17.1e-10886.61Trafficking protein particle complex subunit 3, partial [Cucurbita argyrosperma ... [more]
KAG6607818.18.4e-10191.79Trafficking protein particle complex subunit 3, partial [Cucurbita argyrosperma ... [more]
XP_038896395.15.8e-9495.16trafficking protein particle complex subunit 3 [Benincasa hispida][more]
XP_022941300.12.9e-9394.09trafficking protein particle complex subunit 3-like [Cucurbita moschata][more]
XP_022139368.13.8e-9394.09trafficking protein particle complex subunit 3 [Momordica charantia][more]
BLAST of Lsi04G012360 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G54750.18.7e-8883.33Transport protein particle (TRAPP) component [more]
AT5G54750.25.3e-8577.89Transport protein particle (TRAPP) component [more]
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 86..106
NoneNo IPR availableGENE3D3.30.1380.20Trafficking protein particle complex subunit 3coord: 58..231
e-value: 1.2E-78
score: 264.7
NoneNo IPR availablePANTHERPTHR13048:SF5PROTEIN PARTICLE COMPLEX SUBUNIT, PUTATIVE-RELATEDcoord: 55..232
IPR007194Transport protein particle (TRAPP) componentPFAMPF04051TRAPPcoord: 78..193
e-value: 1.0E-25
score: 90.2
IPR016721Bet3 familyPANTHERPTHR13048TRAFFICKING PROTEIN PARTICLE COMPLEX SUBUNIT 3coord: 55..232
IPR016721Bet3 familyCDDcd14942TRAPPC3_bet3coord: 74..220
e-value: 2.93456E-93
score: 268.224
IPR024096NO signalling/Golgi transport ligand-binding domain superfamilySUPERFAMILY111126Ligand-binding domain in the NO signalling and Golgi transportcoord: 72..222

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi04G012360.1Lsi04G012360.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport
biological_process GO:0006891 intra-Golgi vesicle-mediated transport
biological_process GO:0048193 Golgi vesicle transport
cellular_component GO:0033106 cis-Golgi network membrane
cellular_component GO:0005829 cytosol
cellular_component GO:0005783 endoplasmic reticulum
cellular_component GO:0030008 TRAPP complex