Lsi04G011540 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi04G011540
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	DNA helicase
Location	chr04: 16191566 .. 16193592 (+)
RNA-Seq Expression	Lsi04G011540
Synteny	Lsi04G011540

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGAAGGCTTTGAGAAGGTTTATGAGGTCTATATTCTTGTCCTTACATTTGATATAATTACATTTCTTAAAATACTTGGTCACGTATACGTGTACCGATAAAGTTTTCATACATTGTTCATTTTGTTAGAAATAGAAACAAGATTGCTAGTTGAAGAAACTCATTTCGTTTTCCCAAAAAAAAAAAAAAAAGATTGCTAGTTGAAACGTACTTGAGAGTAAATCGGTGGAAACATTATCTTTTATCTTATATTTAATTAGCGTATTGGATGCTTCTAATGTGTGTGGAAGTACTTTCAATAATAAATTTATAACTTCAAAATTTTATGTCTTGTATATTTATTTTCTTGAAAGGGTGGAGCTTTCGTTTATGTATTCTGTGGGGGAGGGAATAAAAATTTCATAAAGTCAAGATGCAGCATCTGTTCTAGAGTTAATTGTTGTTTTAAGTTCTGCCAGTTCTTGATTGAGATACTTTAGACCCGTGCATGCAGTATTACATATGTAAAGGATGCTGTTTAATATGGATGAGAGAATGATGATTGTTCGATACTTATCTTCTTGTTTGACAAAAACGATTTACATGATGATAGATGATGCTGGATGAGTTAGAAAAAGGTGGGAAGGTGTATCTCGTGTATCCAGTGATTGAGCAATCCGAACAGCTTCCTCAGCTTCATGCTGCTTCAGAAGGTCTTCAATCCATTTCTTACAGGTTTCAGGACTATAACTGTGGGTTGTTGCACGGGAAAATGAAGAGTGATGAGAAAGAGGAAGCTTTACGGAGATTTCGAAACGGAGATACACAGATACTACTTTCTACCCAAGTGATTGAGATTGGAGTGGACGTTCCTGATGCATCAATGATGGTTGTCATGAATGCTGAGAGGTTTGGAATTGCTCAGCTCCATCAACTAAGAGGACGAGTTGGACGTGGAATGAAGAAGTCTAGATGCATCTTGGTGGCATCTACTTCAAGCAGCTTAAGTCGCTTGAAGGTGTTGGAGAATTCGTCAGATGGTTTTCATTTGGCAGAAGTTGATCTTCTTTTACGTGGACCTGGTGATTTGCTTGGTAAAAAACAGTCGGGACATCTTCCAGAATTTCCAATTGCAAGATTGGAGGTAGATGGGAATATCTTGGAAGAAGCACATCTTGCCGCTTTGGTATGTTTTCATTTAGCTCCTATTTTTATTGCATGATTTATCAAGCATAGAATACAAACTTTATTTCTAGCTCCAAATTATGTACCATATTAGAAGTAAAAATTTGGTCAAACTATGAGTGTGATCGCTGCATTTTTCATGATTGTGTTTATTTAGTTAGTCCTCTTATATTATAAAAAGTTTGTGATAGGACTTTAAAGTTTTAGTGTGTATTTAGTTCTTATCTTTTTTTGACAAGTTTCCAAACTTTAAATTTTGTCTAATGAGTCTCCATTGTTAACTCCGTCAATTTAACTTACGTGACATTGATTCTTAATTTAAGAAGTTTCTAATAGGTCATTATACTTTCAATTTTGTTTGCAATGAGATTCTTGTCAACTTCATTCATGGAATATTTATGCCATTAAATGTCAAAGCTTACCCCAACTCGGCCCACATAATCTTTAAACAATATGATTAGTATACTACACAAGCATTCAATTGGTACGGTTAACGATTGAGACCTATTAGACACAAAATTGAAAGCTCAAAGACTTGTTAGAAACTTTTTGAAGTATACGGACCTATTTAACACAATTTTGAAAGTTGGAGCCCATTAATTTTTTTTTTTTTAAAATAGAGAGATTAAGCGGTCTTAATCTTACAAGTGTAGGAACCAAATTTTTAATACCAACTTAAATTTTGCATAGATAGTTTAATGTTTGATATCTTGGAATTACATTGGTTCAGAAGTATAACTTAGACAGCGGTTTACTCTCACATGCAGAAAATTTTAAGCATCTCTCATGATTTGGAGCAGTTTCCTGCCCTGAAGATGGAGCTTAGCATGAGGCAGCCACTTTGTCTACTTGGTGATTAG

mRNA sequence

ATGATGAAGGCTTTGAGAAGGTTTATGAGCGTATTGGATGCTTCTAATATGATGCTGGATGAGTTAGAAAAAGGTGGGAAGGTGTATCTCGTGTATCCAGTGATTGAGCAATCCGAACAGCTTCCTCAGCTTCATGCTGCTTCAGAAGGTCTTCAATCCATTTCTTACAGGTTTCAGGACTATAACTGTGGGTTGTTGCACGGGAAAATGAAGAGTGATGAGAAAGAGGAAGCTTTACGGAGATTTCGAAACGGAGATACACAGATACTACTTTCTACCCAAGTGATTGAGATTGGAGTGGACGTTCCTGATGCATCAATGATGGTTGTCATGAATGCTGAGAGGTTTGGAATTGCTCAGCTCCATCAACTAAGAGGACGAGTTGGACGTGGAATGAAGAAGTCTAGATGCATCTTGGTGGCATCTACTTCAAGCAGCTTAAGTCGCTTGAAGGTGTTGGAGAATTCGTCAGATGGTTTTCATTTGGCAGAAGTTGATCTTCTTTTACGTGGACCTGGTGATTTGCTTGGTAAAAAACAGTCGGGACATCTTCCAGAATTTCCAATTGCAAGATTGGAGGTAGATGGGAATATCTTGGAAGAAGCACATCTTGCCGCTTTGACAGCGGTTTACTCTCACATGCAGAAAATTTTAAGCATCTCTCATGATTTGGAGCAGTTTCCTGCCCTGAAGATGGAGCTTAGCATGAGGCAGCCACTTTGTCTACTTGGTGATTAG

Coding sequence (CDS)

ATGATGAAGGCTTTGAGAAGGTTTATGAGCGTATTGGATGCTTCTAATATGATGCTGGATGAGTTAGAAAAAGGTGGGAAGGTGTATCTCGTGTATCCAGTGATTGAGCAATCCGAACAGCTTCCTCAGCTTCATGCTGCTTCAGAAGGTCTTCAATCCATTTCTTACAGGTTTCAGGACTATAACTGTGGGTTGTTGCACGGGAAAATGAAGAGTGATGAGAAAGAGGAAGCTTTACGGAGATTTCGAAACGGAGATACACAGATACTACTTTCTACCCAAGTGATTGAGATTGGAGTGGACGTTCCTGATGCATCAATGATGGTTGTCATGAATGCTGAGAGGTTTGGAATTGCTCAGCTCCATCAACTAAGAGGACGAGTTGGACGTGGAATGAAGAAGTCTAGATGCATCTTGGTGGCATCTACTTCAAGCAGCTTAAGTCGCTTGAAGGTGTTGGAGAATTCGTCAGATGGTTTTCATTTGGCAGAAGTTGATCTTCTTTTACGTGGACCTGGTGATTTGCTTGGTAAAAAACAGTCGGGACATCTTCCAGAATTTCCAATTGCAAGATTGGAGGTAGATGGGAATATCTTGGAAGAAGCACATCTTGCCGCTTTGACAGCGGTTTACTCTCACATGCAGAAAATTTTAAGCATCTCTCATGATTTGGAGCAGTTTCCTGCCCTGAAGATGGAGCTTAGCATGAGGCAGCCACTTTGTCTACTTGGTGATTAG

Protein sequence

MMKALRRFMSVLDASNMMLDELEKGGKVYLVYPVIEQSEQLPQLHAASEGLQSISYRFQDYNCGLLHGKMKSDEKEEALRRFRNGDTQILLSTQVIEIGVDVPDASMMVVMNAERFGIAQLHQLRGRVGRGMKKSRCILVASTSSSLSRLKVLENSSDGFHLAEVDLLLRGPGDLLGKKQSGHLPEFPIARLEVDGNILEEAHLAALTAVYSHMQKILSISHDLEQFPALKMELSMRQPLCLLGD

Homology

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BLAST of Lsi04G011540 vs. ExPASy Swiss-Prot
Match: F4INA9 (ATP-dependent DNA helicase homolog RECG, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RECG PE=3 SV=1)

HSP 1 Score: 345.5 bits (885), Expect = 4.9e-94
Identity = 170/235 (72.34%), Postives = 204/235 (86.81%), Query Frame = 0


Query: 11  VLDASNMMLDELEKGGKVYLVYPVIEQSEQLPQLHAASEGLQSISYRFQDYNCGLLHGKM 70
           + +  +MML++L+ GG+VY+VYPVI+QSEQLPQL AAS  L+ ++ +F  YNCGLLHG+M
Sbjct: 747 IKEVYSMMLEDLKSGGRVYVVYPVIDQSEQLPQLRAASAELEIVTKKFPKYNCGLLHGRM 806

Query: 71  KSDEKEEALRRFRNGDTQILLSTQVIEIGVDVPDASMMVVMNAERFGIAQLHQLRGRVGR 130
           KSD+KEEAL +FR+G+TQILLSTQVIEIGVDVPDASMMVVMNAERFGIAQLHQLRGRVGR
Sbjct: 807 KSDDKEEALNKFRSGETQILLSTQVIEIGVDVPDASMMVVMNAERFGIAQLHQLRGRVGR 866

Query: 131 GMKKSRCILVASTSSSLSRLKVLENSSDGFHLAEVDLLLRGPGDLLGKKQSGHLPEFPIA 190
           G +KS+C+LV S+++SL RL +L  SSDGF+LA +DLLLRGPGDLLGKKQSGHLPEFP+A
Sbjct: 867 GTRKSKCLLVGSSTNSLKRLNMLGKSSDGFYLANIDLLLRGPGDLLGKKQSGHLPEFPVA 926

Query: 191 RLEVDGNILEEAHLAALTAVYSHMQKILSISHDLEQFPALKMELSMRQPLCLLGD 246
           RLE+DGN+L+EAH+AAL         +L  SHDLE+FPALK ELSMRQPLCLLGD
Sbjct: 927 RLEIDGNMLQEAHIAAL--------NVLGDSHDLEKFPALKAELSMRQPLCLLGD 973

[Close]

BLAST of Lsi04G011540 vs. ExPASy Swiss-Prot
Match: Q55681 (ATP-dependent DNA helicase RecG OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 GN=recG PE=3 SV=1)

HSP 1 Score: 190.3 bits (482), Expect = 2.6e-47
Identity = 109/227 (48.02%), Postives = 148/227 (65.20%), Query Frame = 0


Query: 21  ELEKGGKVYLVYPVIEQSEQLPQLHAASEGLQSISYRFQDYNCGLLHGKMKSDEKEEALR 80
           E+ +G +VY+++P IE+SE+L    A  E        F ++N GLLHG++KS EKE AL 
Sbjct: 611 EVAQGRQVYIIFPAIEESEKLDIKAAVEEHKYLTEKIFPNFNIGLLHGRLKSAEKEAALT 670

Query: 81  RFRNGDTQILLSTQVIEIGVDVPDASMMVVMNAERFGIAQLHQLRGRVGRGMKKSRCILV 140
            FR   T+I++ST VIE+GVDVP+A++MV+ NAERFG++QLHQLRGRVGRG  +S C+LV
Sbjct: 671 AFREKQTEIIVSTTVIEVGVDVPNATVMVIENAERFGLSQLHQLRGRVGRGSHQSYCLLV 730

Query: 141 ASTSS--SLSRLKVLENSSDGFHLAEVDLLLRGPGDLLGKKQSGHLPEFPIARLEVDGNI 200
            ++ S  +  RL V+E S DGF +AE+DL LRGPG+ LG KQSG LP+F +A L  D  +
Sbjct: 731 TNSKSNDARQRLGVMEQSQDGFFIAEMDLRLRGPGEFLGTKQSG-LPDFALASLVEDQEV 790

Query: 201 LEEAHLAALTAVYSHMQKILSISHDLEQFPALKMELSMRQPLCLLGD 246
           L  A  AA T +            +LE  P LK++L  R    L G+
Sbjct: 791 LLLAREAAETMMVE--------DPNLEAHPDLKIKLVQRYEKLLGGE 828

[Close]

BLAST of Lsi04G011540 vs. ExPASy Swiss-Prot
Match: Q54900 (ATP-dependent DNA helicase RecG OS=Streptococcus pneumoniae serotype 4 (strain ATCC BAA-334 / TIGR4) OX=170187 GN=recG PE=3 SV=2)

HSP 1 Score: 168.7 bits (426), Expect = 8.2e-41
Identity = 88/188 (46.81%), Postives = 134/188 (71.28%), Query Frame = 0


Query: 21  ELEKGGKVYLVYPVIEQSEQLPQLHAASEGLQSISYRFQDYNCGLLHGKMKSDEKEEALR 80
           E++KG +VY++ P+IE+SE L   +A +   +  ++        LLHG+MKSDEK++ ++
Sbjct: 456 EIQKGSQVYVISPLIEESEALDLKNAIALSEELTTHFAGKAEVALLHGRMKSDEKDQIMQ 515

Query: 81  RFRNGDTQILLSTQVIEIGVDVPDASMMVVMNAERFGIAQLHQLRGRVGRGMKKSRCILV 140
            F+   T IL+ST VIE+GV+VP+A++M++M+A+RFG++QLHQLRGRVGRG K+S  +LV
Sbjct: 516 DFKERKTDILVSTTVIEVGVNVPNATVMIIMDADRFGLSQLHQLRGRVGRGDKQSYAVLV 575

Query: 141 AS--TSSSLSRLKVLENSSDGFHLAEVDLLLRGPGDLLGKKQSGHLPEFPIARLEVDGNI 200
           A+  T S   R++++  +++GF LAE DL +RG G++ G +QSG LPEF +A +  D  I
Sbjct: 576 ANPKTDSGKDRMRIMTETTNGFVLAEEDLKMRGSGEIFGTRQSG-LPEFQVADIIEDFPI 635

Query: 201 LEEAHLAA 207
           LEEA   A
Sbjct: 636 LEEARKVA 642

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BLAST of Lsi04G011540 vs. ExPASy Swiss-Prot
Match: O34942 (ATP-dependent DNA helicase RecG OS=Bacillus subtilis (strain 168) OX=224308 GN=recG PE=3 SV=1)

HSP 1 Score: 168.3 bits (425), Expect = 1.1e-40
Identity = 91/195 (46.67%), Postives = 134/195 (68.72%), Query Frame = 0


Query: 21  ELEKGGKVYLVYPVIEQSEQLPQLHAASEGLQSISYRFQ-DYNCGLLHGKMKSDEKEEAL 80
           EL++G + Y++ P+IE+S++L  +  A +    +S  F+  +N GL+HGK+ SDEK++ +
Sbjct: 462 ELKQGRQAYIICPLIEESDKL-DVQNAIDVYNMLSDIFRGKWNVGLMHGKLHSDEKDQVM 521

Query: 81  RRFRNGDTQILLSTQVIEIGVDVPDASMMVVMNAERFGIAQLHQLRGRVGRGMKKSRCIL 140
           R F     QIL+ST V+E+GV+VP+A++MV+ +A+RFG++QLHQLRGRVGRG  +S CIL
Sbjct: 522 REFSANHCQILVSTTVVEVGVNVPNATIMVIYDADRFGLSQLHQLRGRVGRGEHQSFCIL 581

Query: 141 VASTSSSL--SRLKVLENSSDGFHLAEVDLLLRGPGDLLGKKQSGHLPEFPIARLEVDGN 200
           +A   S     R++++  ++DGF L+E DL LRGPGD  GKKQSG +PEF +A +  D  
Sbjct: 582 MADPKSETGKERMRIMSETNDGFELSEKDLELRGPGDFFGKKQSG-MPEFKVADMVHDYR 641

Query: 201 ILEEAHLAALTAVYS 213
            LE A   A   V S
Sbjct: 642 ALETARQDAANLVAS 654

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BLAST of Lsi04G011540 vs. ExPASy Swiss-Prot
Match: O50581 (ATP-dependent DNA helicase RecG OS=Staphylococcus aureus (strain NCTC 8325 / PS 47) OX=93061 GN=recG PE=3 SV=1)

HSP 1 Score: 167.5 bits (423), Expect = 1.8e-40
Identity = 85/197 (43.15%), Postives = 131/197 (66.50%), Query Frame = 0


Query: 18  MLDELEKGGKVYLVYPVIEQSEQLPQLHAASEGLQSISYRFQDYNCGLLHGKMKSDEKEE 77
           M  EL+KG + Y++ P+IE SE L  +       +S+   +     GLLHGK+ +DEK+E
Sbjct: 466 MTSELKKGRQAYVICPLIESSEHLEDVQNVVALYESLQQYYGVSRVGLLHGKLSADEKDE 525

Query: 78  ALRRFRNGDTQILLSTQVIEIGVDVPDASMMVVMNAERFGIAQLHQLRGRVGRGMKKSRC 137
            +++F N +  +L+ST V+E+GV+VP+A+ M++ +A+RFG++ LHQLRGRVGR  ++S C
Sbjct: 526 VMQKFSNHEINVLVSTTVVEVGVNVPNATFMMIYDADRFGLSTLHQLRGRVGRSDQQSYC 585

Query: 138 ILVAS--TSSSLSRLKVLENSSDGFHLAEVDLLLRGPGDLLGKKQSGHLPEFPIARLEVD 197
           +L+AS  T + + R+ ++  ++DGF L+E DL +RGPGD  G KQSG LP+F +A L  D
Sbjct: 586 VLIASPKTETGIERMTIMTQTTDGFELSERDLEMRGPGDFFGVKQSG-LPDFLVANLVED 645

Query: 198 GNILEEAHLAALTAVYS 213
             +LE A   A   + S
Sbjct: 646 YRMLEVARDEAAELIQS 661

[Close]

BLAST of Lsi04G011540 vs. ExPASy TrEMBL
Match: A0A1S3C041 (DNA helicase OS=Cucumis melo OX=3656 GN=LOC103495086 PE=3 SV=1)

HSP 1 Score: 409.5 bits (1051), Expect = 1.0e-110
Identity = 211/229 (92.14%), Postives = 217/229 (94.76%), Query Frame = 0


Query: 17  MMLDELEKGGKVYLVYPVIEQSEQLPQLHAASEGLQSISYRFQDYNCGLLHGKMKSDEKE 76
           MMLDEL+KGGKVYLVYPVIEQS+QLPQLHAASEGLQSISYRFQ YNCGLLHGKMK DEKE
Sbjct: 754 MMLDELDKGGKVYLVYPVIEQSDQLPQLHAASEGLQSISYRFQGYNCGLLHGKMKKDEKE 813

Query: 77  EALRRFRNGDTQILLSTQVIEIGVDVPDASMMVVMNAERFGIAQLHQLRGRVGRGMKKSR 136
           EALRRFRNGD QILLSTQVIE+GVDVPDASMMVVMNAERFGIAQLHQLRGRVGRGMKKSR
Sbjct: 814 EALRRFRNGDIQILLSTQVIEVGVDVPDASMMVVMNAERFGIAQLHQLRGRVGRGMKKSR 873

Query: 137 CILVASTSSSLSRLKVLENSSDGFHLAEVDLLLRGPGDLLGKKQSGHLPEFPIARLEVDG 196
           CILVAST+SSLSRLKVLENSSDGFHLAEVDLLLRGPGDLLG+KQSGHLPEFPIARLEVDG
Sbjct: 874 CILVASTTSSLSRLKVLENSSDGFHLAEVDLLLRGPGDLLGRKQSGHLPEFPIARLEVDG 933

Query: 197 NILEEAHLAALTAVYSHMQKILSISHDLEQFPALKMELSMRQPLCLLGD 246
           NILE+AHLAAL        KILSIS DLEQFPALKMELSMRQPLCLLGD
Sbjct: 934 NILEDAHLAAL--------KILSISDDLEQFPALKMELSMRQPLCLLGD 974

[Close]

BLAST of Lsi04G011540 vs. ExPASy TrEMBL
Match: A0A6J1IFJ2 (DNA helicase OS=Cucurbita maxima OX=3661 GN=LOC111472714 PE=3 SV=1)

HSP 1 Score: 407.9 bits (1047), Expect = 3.0e-110
Identity = 209/229 (91.27%), Postives = 217/229 (94.76%), Query Frame = 0


Query: 17  MMLDELEKGGKVYLVYPVIEQSEQLPQLHAASEGLQSISYRFQDYNCGLLHGKMKSDEKE 76
           MMLDEL+ GGKVYLVYPVIEQSEQLPQL AASEGLQSISYRFQDYNCGLLHG+MKSDEKE
Sbjct: 775 MMLDELQTGGKVYLVYPVIEQSEQLPQLRAASEGLQSISYRFQDYNCGLLHGRMKSDEKE 834

Query: 77  EALRRFRNGDTQILLSTQVIEIGVDVPDASMMVVMNAERFGIAQLHQLRGRVGRGMKKSR 136
           EALRRFRNGDTQILLSTQVIE+GVD+PDASMMVVMNAERFGIAQLHQLRGRVGRG KKSR
Sbjct: 835 EALRRFRNGDTQILLSTQVIEVGVDIPDASMMVVMNAERFGIAQLHQLRGRVGRGKKKSR 894

Query: 137 CILVASTSSSLSRLKVLENSSDGFHLAEVDLLLRGPGDLLGKKQSGHLPEFPIARLEVDG 196
           CILVAST+SSLSRLKVLEN SDGFHLA+VDLLLRGPGDLLGKKQSGH+PEFPIARLEVDG
Sbjct: 895 CILVASTASSLSRLKVLENMSDGFHLAKVDLLLRGPGDLLGKKQSGHIPEFPIARLEVDG 954

Query: 197 NILEEAHLAALTAVYSHMQKILSISHDLEQFPALKMELSMRQPLCLLGD 246
           NILEEAHLAAL        KILSISHDLE+FPALKMELSMRQPLCLLGD
Sbjct: 955 NILEEAHLAAL--------KILSISHDLEKFPALKMELSMRQPLCLLGD 995

[Close]

BLAST of Lsi04G011540 vs. ExPASy TrEMBL
Match: A0A6J1IDF6 (DNA helicase OS=Cucurbita maxima OX=3661 GN=LOC111472714 PE=3 SV=1)

HSP 1 Score: 407.9 bits (1047), Expect = 3.0e-110
Identity = 209/229 (91.27%), Postives = 217/229 (94.76%), Query Frame = 0


Query: 17  MMLDELEKGGKVYLVYPVIEQSEQLPQLHAASEGLQSISYRFQDYNCGLLHGKMKSDEKE 76
           MMLDEL+ GGKVYLVYPVIEQSEQLPQL AASEGLQSISYRFQDYNCGLLHG+MKSDEKE
Sbjct: 756 MMLDELQTGGKVYLVYPVIEQSEQLPQLRAASEGLQSISYRFQDYNCGLLHGRMKSDEKE 815

Query: 77  EALRRFRNGDTQILLSTQVIEIGVDVPDASMMVVMNAERFGIAQLHQLRGRVGRGMKKSR 136
           EALRRFRNGDTQILLSTQVIE+GVD+PDASMMVVMNAERFGIAQLHQLRGRVGRG KKSR
Sbjct: 816 EALRRFRNGDTQILLSTQVIEVGVDIPDASMMVVMNAERFGIAQLHQLRGRVGRGKKKSR 875

Query: 137 CILVASTSSSLSRLKVLENSSDGFHLAEVDLLLRGPGDLLGKKQSGHLPEFPIARLEVDG 196
           CILVAST+SSLSRLKVLEN SDGFHLA+VDLLLRGPGDLLGKKQSGH+PEFPIARLEVDG
Sbjct: 876 CILVASTASSLSRLKVLENMSDGFHLAKVDLLLRGPGDLLGKKQSGHIPEFPIARLEVDG 935

Query: 197 NILEEAHLAALTAVYSHMQKILSISHDLEQFPALKMELSMRQPLCLLGD 246
           NILEEAHLAAL        KILSISHDLE+FPALKMELSMRQPLCLLGD
Sbjct: 936 NILEEAHLAAL--------KILSISHDLEKFPALKMELSMRQPLCLLGD 976

[Close]

BLAST of Lsi04G011540 vs. ExPASy TrEMBL
Match: A0A6J1FSV3 (DNA helicase OS=Cucurbita moschata OX=3662 GN=LOC111446985 PE=3 SV=1)

HSP 1 Score: 407.1 bits (1045), Expect = 5.1e-110
Identity = 208/229 (90.83%), Postives = 216/229 (94.32%), Query Frame = 0


Query: 17  MMLDELEKGGKVYLVYPVIEQSEQLPQLHAASEGLQSISYRFQDYNCGLLHGKMKSDEKE 76
           MMLDEL+ GGKVYLVYPVIEQSEQLPQL AASEGLQSISYRFQDYNCGLLHG+MK DEKE
Sbjct: 775 MMLDELQTGGKVYLVYPVIEQSEQLPQLRAASEGLQSISYRFQDYNCGLLHGRMKGDEKE 834

Query: 77  EALRRFRNGDTQILLSTQVIEIGVDVPDASMMVVMNAERFGIAQLHQLRGRVGRGMKKSR 136
           EALRRFRNGDTQILLSTQVIE+GVD+PDASMMVVMNAERFGIAQLHQLRGRVGRGMKKSR
Sbjct: 835 EALRRFRNGDTQILLSTQVIEVGVDIPDASMMVVMNAERFGIAQLHQLRGRVGRGMKKSR 894

Query: 137 CILVASTSSSLSRLKVLENSSDGFHLAEVDLLLRGPGDLLGKKQSGHLPEFPIARLEVDG 196
           CILVAST+SSL RLKVLEN SDGFHLA+VDLLLRGPGDLLGKKQSGH+PEFPIARLEVDG
Sbjct: 895 CILVASTASSLGRLKVLENMSDGFHLAKVDLLLRGPGDLLGKKQSGHIPEFPIARLEVDG 954

Query: 197 NILEEAHLAALTAVYSHMQKILSISHDLEQFPALKMELSMRQPLCLLGD 246
           NILEEAHLAAL        KILSISHDLE+FPALKMELSMRQPLCLLGD
Sbjct: 955 NILEEAHLAAL--------KILSISHDLEKFPALKMELSMRQPLCLLGD 995

[Close]

BLAST of Lsi04G011540 vs. ExPASy TrEMBL
Match: A0A6J1FUH2 (DNA helicase OS=Cucurbita moschata OX=3662 GN=LOC111446985 PE=3 SV=1)

HSP 1 Score: 407.1 bits (1045), Expect = 5.1e-110
Identity = 208/229 (90.83%), Postives = 216/229 (94.32%), Query Frame = 0


Query: 17  MMLDELEKGGKVYLVYPVIEQSEQLPQLHAASEGLQSISYRFQDYNCGLLHGKMKSDEKE 76
           MMLDEL+ GGKVYLVYPVIEQSEQLPQL AASEGLQSISYRFQDYNCGLLHG+MK DEKE
Sbjct: 479 MMLDELQTGGKVYLVYPVIEQSEQLPQLRAASEGLQSISYRFQDYNCGLLHGRMKGDEKE 538

Query: 77  EALRRFRNGDTQILLSTQVIEIGVDVPDASMMVVMNAERFGIAQLHQLRGRVGRGMKKSR 136
           EALRRFRNGDTQILLSTQVIE+GVD+PDASMMVVMNAERFGIAQLHQLRGRVGRGMKKSR
Sbjct: 539 EALRRFRNGDTQILLSTQVIEVGVDIPDASMMVVMNAERFGIAQLHQLRGRVGRGMKKSR 598

Query: 137 CILVASTSSSLSRLKVLENSSDGFHLAEVDLLLRGPGDLLGKKQSGHLPEFPIARLEVDG 196
           CILVAST+SSL RLKVLEN SDGFHLA+VDLLLRGPGDLLGKKQSGH+PEFPIARLEVDG
Sbjct: 599 CILVASTASSLGRLKVLENMSDGFHLAKVDLLLRGPGDLLGKKQSGHIPEFPIARLEVDG 658

Query: 197 NILEEAHLAALTAVYSHMQKILSISHDLEQFPALKMELSMRQPLCLLGD 246
           NILEEAHLAAL        KILSISHDLE+FPALKMELSMRQPLCLLGD
Sbjct: 659 NILEEAHLAAL--------KILSISHDLEKFPALKMELSMRQPLCLLGD 699

[Close]

BLAST of Lsi04G011540 vs. NCBI nr
Match: XP_031742292.1 (ATP-dependent DNA helicase homolog RECG, chloroplastic isoform X2 [Cucumis sativus])

HSP 1 Score: 410.6 bits (1054), Expect = 9.4e-111
Identity = 212/229 (92.58%), Postives = 217/229 (94.76%), Query Frame = 0


Query: 17  MMLDELEKGGKVYLVYPVIEQSEQLPQLHAASEGLQSISYRFQDYNCGLLHGKMKSDEKE 76
           MMLDEL+KGGKVYLVYPVIEQS+QLPQL AASE LQSISYRFQ YNCGLLHGKMK DEKE
Sbjct: 572 MMLDELDKGGKVYLVYPVIEQSDQLPQLRAASEDLQSISYRFQGYNCGLLHGKMKKDEKE 631

Query: 77  EALRRFRNGDTQILLSTQVIEIGVDVPDASMMVVMNAERFGIAQLHQLRGRVGRGMKKSR 136
           EALRRFRNGDTQILLSTQVIE+GVDVPDASMMVVMNAERFGIAQLHQLRGRVGRGMKKSR
Sbjct: 632 EALRRFRNGDTQILLSTQVIEVGVDVPDASMMVVMNAERFGIAQLHQLRGRVGRGMKKSR 691

Query: 137 CILVASTSSSLSRLKVLENSSDGFHLAEVDLLLRGPGDLLGKKQSGHLPEFPIARLEVDG 196
           CILVAST+SSLSRLKVLENSSDGFHLAEVDLLLRGPGDLLGKKQSGHLPEFPIARLEVDG
Sbjct: 692 CILVASTTSSLSRLKVLENSSDGFHLAEVDLLLRGPGDLLGKKQSGHLPEFPIARLEVDG 751

Query: 197 NILEEAHLAALTAVYSHMQKILSISHDLEQFPALKMELSMRQPLCLLGD 246
           NILE+AHLAAL        KILSISHDLEQFPALKMELSMRQPLCLLGD
Sbjct: 752 NILEDAHLAAL--------KILSISHDLEQFPALKMELSMRQPLCLLGD 792

[Close]

BLAST of Lsi04G011540 vs. NCBI nr
Match: XP_011659838.1 (ATP-dependent DNA helicase homolog RECG, chloroplastic isoform X1 [Cucumis sativus] >KAE8648137.1 hypothetical protein Csa_021528 [Cucumis sativus])

HSP 1 Score: 410.6 bits (1054), Expect = 9.4e-111
Identity = 212/229 (92.58%), Postives = 217/229 (94.76%), Query Frame = 0


Query: 17  MMLDELEKGGKVYLVYPVIEQSEQLPQLHAASEGLQSISYRFQDYNCGLLHGKMKSDEKE 76
           MMLDEL+KGGKVYLVYPVIEQS+QLPQL AASE LQSISYRFQ YNCGLLHGKMK DEKE
Sbjct: 755 MMLDELDKGGKVYLVYPVIEQSDQLPQLRAASEDLQSISYRFQGYNCGLLHGKMKKDEKE 814

Query: 77  EALRRFRNGDTQILLSTQVIEIGVDVPDASMMVVMNAERFGIAQLHQLRGRVGRGMKKSR 136
           EALRRFRNGDTQILLSTQVIE+GVDVPDASMMVVMNAERFGIAQLHQLRGRVGRGMKKSR
Sbjct: 815 EALRRFRNGDTQILLSTQVIEVGVDVPDASMMVVMNAERFGIAQLHQLRGRVGRGMKKSR 874

Query: 137 CILVASTSSSLSRLKVLENSSDGFHLAEVDLLLRGPGDLLGKKQSGHLPEFPIARLEVDG 196
           CILVAST+SSLSRLKVLENSSDGFHLAEVDLLLRGPGDLLGKKQSGHLPEFPIARLEVDG
Sbjct: 875 CILVASTTSSLSRLKVLENSSDGFHLAEVDLLLRGPGDLLGKKQSGHLPEFPIARLEVDG 934

Query: 197 NILEEAHLAALTAVYSHMQKILSISHDLEQFPALKMELSMRQPLCLLGD 246
           NILE+AHLAAL        KILSISHDLEQFPALKMELSMRQPLCLLGD
Sbjct: 935 NILEDAHLAAL--------KILSISHDLEQFPALKMELSMRQPLCLLGD 975

[Close]

BLAST of Lsi04G011540 vs. NCBI nr
Match: XP_008454766.1 (PREDICTED: ATP-dependent DNA helicase homolog RECG, chloroplastic [Cucumis melo])

HSP 1 Score: 409.5 bits (1051), Expect = 2.1e-110
Identity = 211/229 (92.14%), Postives = 217/229 (94.76%), Query Frame = 0


Query: 17  MMLDELEKGGKVYLVYPVIEQSEQLPQLHAASEGLQSISYRFQDYNCGLLHGKMKSDEKE 76
           MMLDEL+KGGKVYLVYPVIEQS+QLPQLHAASEGLQSISYRFQ YNCGLLHGKMK DEKE
Sbjct: 754 MMLDELDKGGKVYLVYPVIEQSDQLPQLHAASEGLQSISYRFQGYNCGLLHGKMKKDEKE 813

Query: 77  EALRRFRNGDTQILLSTQVIEIGVDVPDASMMVVMNAERFGIAQLHQLRGRVGRGMKKSR 136
           EALRRFRNGD QILLSTQVIE+GVDVPDASMMVVMNAERFGIAQLHQLRGRVGRGMKKSR
Sbjct: 814 EALRRFRNGDIQILLSTQVIEVGVDVPDASMMVVMNAERFGIAQLHQLRGRVGRGMKKSR 873

Query: 137 CILVASTSSSLSRLKVLENSSDGFHLAEVDLLLRGPGDLLGKKQSGHLPEFPIARLEVDG 196
           CILVAST+SSLSRLKVLENSSDGFHLAEVDLLLRGPGDLLG+KQSGHLPEFPIARLEVDG
Sbjct: 874 CILVASTTSSLSRLKVLENSSDGFHLAEVDLLLRGPGDLLGRKQSGHLPEFPIARLEVDG 933

Query: 197 NILEEAHLAALTAVYSHMQKILSISHDLEQFPALKMELSMRQPLCLLGD 246
           NILE+AHLAAL        KILSIS DLEQFPALKMELSMRQPLCLLGD
Sbjct: 934 NILEDAHLAAL--------KILSISDDLEQFPALKMELSMRQPLCLLGD 974

[Close]

BLAST of Lsi04G011540 vs. NCBI nr
Match: XP_022974240.1 (ATP-dependent DNA helicase homolog RECG, chloroplastic isoform X2 [Cucurbita maxima])

HSP 1 Score: 407.9 bits (1047), Expect = 6.1e-110
Identity = 209/229 (91.27%), Postives = 217/229 (94.76%), Query Frame = 0


Query: 17  MMLDELEKGGKVYLVYPVIEQSEQLPQLHAASEGLQSISYRFQDYNCGLLHGKMKSDEKE 76
           MMLDEL+ GGKVYLVYPVIEQSEQLPQL AASEGLQSISYRFQDYNCGLLHG+MKSDEKE
Sbjct: 756 MMLDELQTGGKVYLVYPVIEQSEQLPQLRAASEGLQSISYRFQDYNCGLLHGRMKSDEKE 815

Query: 77  EALRRFRNGDTQILLSTQVIEIGVDVPDASMMVVMNAERFGIAQLHQLRGRVGRGMKKSR 136
           EALRRFRNGDTQILLSTQVIE+GVD+PDASMMVVMNAERFGIAQLHQLRGRVGRG KKSR
Sbjct: 816 EALRRFRNGDTQILLSTQVIEVGVDIPDASMMVVMNAERFGIAQLHQLRGRVGRGKKKSR 875

Query: 137 CILVASTSSSLSRLKVLENSSDGFHLAEVDLLLRGPGDLLGKKQSGHLPEFPIARLEVDG 196
           CILVAST+SSLSRLKVLEN SDGFHLA+VDLLLRGPGDLLGKKQSGH+PEFPIARLEVDG
Sbjct: 876 CILVASTASSLSRLKVLENMSDGFHLAKVDLLLRGPGDLLGKKQSGHIPEFPIARLEVDG 935

Query: 197 NILEEAHLAALTAVYSHMQKILSISHDLEQFPALKMELSMRQPLCLLGD 246
           NILEEAHLAAL        KILSISHDLE+FPALKMELSMRQPLCLLGD
Sbjct: 936 NILEEAHLAAL--------KILSISHDLEKFPALKMELSMRQPLCLLGD 976

[Close]

BLAST of Lsi04G011540 vs. NCBI nr
Match: XP_022974144.1 (ATP-dependent DNA helicase homolog RECG, chloroplastic isoform X1 [Cucurbita maxima] >XP_022974203.1 ATP-dependent DNA helicase homolog RECG, chloroplastic isoform X1 [Cucurbita maxima])

HSP 1 Score: 407.9 bits (1047), Expect = 6.1e-110
Identity = 209/229 (91.27%), Postives = 217/229 (94.76%), Query Frame = 0


Query: 17  MMLDELEKGGKVYLVYPVIEQSEQLPQLHAASEGLQSISYRFQDYNCGLLHGKMKSDEKE 76
           MMLDEL+ GGKVYLVYPVIEQSEQLPQL AASEGLQSISYRFQDYNCGLLHG+MKSDEKE
Sbjct: 775 MMLDELQTGGKVYLVYPVIEQSEQLPQLRAASEGLQSISYRFQDYNCGLLHGRMKSDEKE 834

Query: 77  EALRRFRNGDTQILLSTQVIEIGVDVPDASMMVVMNAERFGIAQLHQLRGRVGRGMKKSR 136
           EALRRFRNGDTQILLSTQVIE+GVD+PDASMMVVMNAERFGIAQLHQLRGRVGRG KKSR
Sbjct: 835 EALRRFRNGDTQILLSTQVIEVGVDIPDASMMVVMNAERFGIAQLHQLRGRVGRGKKKSR 894

Query: 137 CILVASTSSSLSRLKVLENSSDGFHLAEVDLLLRGPGDLLGKKQSGHLPEFPIARLEVDG 196
           CILVAST+SSLSRLKVLEN SDGFHLA+VDLLLRGPGDLLGKKQSGH+PEFPIARLEVDG
Sbjct: 895 CILVASTASSLSRLKVLENMSDGFHLAKVDLLLRGPGDLLGKKQSGHIPEFPIARLEVDG 954

Query: 197 NILEEAHLAALTAVYSHMQKILSISHDLEQFPALKMELSMRQPLCLLGD 246
           NILEEAHLAAL        KILSISHDLE+FPALKMELSMRQPLCLLGD
Sbjct: 955 NILEEAHLAAL--------KILSISHDLEKFPALKMELSMRQPLCLLGD 995

[Close]

BLAST of Lsi04G011540 vs. TAIR 10
Match: AT2G01440.1 (DEAD/DEAH box RNA helicase family protein )

HSP 1 Score: 345.5 bits (885), Expect = 3.5e-95
Identity = 170/235 (72.34%), Postives = 204/235 (86.81%), Query Frame = 0


Query: 11  VLDASNMMLDELEKGGKVYLVYPVIEQSEQLPQLHAASEGLQSISYRFQDYNCGLLHGKM 70
           + +  +MML++L+ GG+VY+VYPVI+QSEQLPQL AAS  L+ ++ +F  YNCGLLHG+M
Sbjct: 747 IKEVYSMMLEDLKSGGRVYVVYPVIDQSEQLPQLRAASAELEIVTKKFPKYNCGLLHGRM 806

Query: 71  KSDEKEEALRRFRNGDTQILLSTQVIEIGVDVPDASMMVVMNAERFGIAQLHQLRGRVGR 130
           KSD+KEEAL +FR+G+TQILLSTQVIEIGVDVPDASMMVVMNAERFGIAQLHQLRGRVGR
Sbjct: 807 KSDDKEEALNKFRSGETQILLSTQVIEIGVDVPDASMMVVMNAERFGIAQLHQLRGRVGR 866

Query: 131 GMKKSRCILVASTSSSLSRLKVLENSSDGFHLAEVDLLLRGPGDLLGKKQSGHLPEFPIA 190
           G +KS+C+LV S+++SL RL +L  SSDGF+LA +DLLLRGPGDLLGKKQSGHLPEFP+A
Sbjct: 867 GTRKSKCLLVGSSTNSLKRLNMLGKSSDGFYLANIDLLLRGPGDLLGKKQSGHLPEFPVA 926

Query: 191 RLEVDGNILEEAHLAALTAVYSHMQKILSISHDLEQFPALKMELSMRQPLCLLGD 246
           RLE+DGN+L+EAH+AAL         +L  SHDLE+FPALK ELSMRQPLCLLGD
Sbjct: 927 RLEIDGNMLQEAHIAAL--------NVLGDSHDLEKFPALKAELSMRQPLCLLGD 973

[Close]

BLAST of Lsi04G011540 vs. TAIR 10
Match: AT3G02060.1 (DEAD/DEAH box helicase, putative )

HSP 1 Score: 110.5 bits (275), Expect = 1.9e-24
Identity = 61/171 (35.67%), Postives = 99/171 (57.89%), Query Frame = 0


Query: 20  DELEKGGKVYLVYPVIEQSEQLPQLHAASEGLQSISYRFQDYNCGLLHGKMKSDEKEEAL 79
           +EL++GG+V+ V         LP++    E +  +   F D +  + HGK  S + EE +
Sbjct: 475 NELDRGGQVFYV---------LPRIKGLEEVMDFLEEAFPDIDIAMAHGKQYSKQLEETM 534

Query: 80  RRFRNGDTQILLSTQVIEIGVDVPDASMMVVMNAERFGIAQLHQLRGRVGRGMKKSRCIL 139
            RF  G  +IL+ T ++E G+D+ +A+ +++ + ++FG+AQL+QLRGRVGR  K++   L
Sbjct: 535 ERFAQGKIKILICTNIVESGLDIQNANTIIIQDVQQFGLAQLYQLRGRVGRADKEAHAYL 594

Query: 140 VASTSSSLS-----RLKVLENSSD---GFHLAEVDLLLRGPGDLLGKKQSG 183
                S LS     RL  LE   +   GF LAE D+ +RG G + G++Q+G
Sbjct: 595 FYPDKSLLSDQALERLSALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTG 636

[Close]

BLAST of Lsi04G011540 vs. TAIR 10
Match: AT3G02060.2 (DEAD/DEAH box helicase, putative )

HSP 1 Score: 110.5 bits (275), Expect = 1.9e-24
Identity = 61/171 (35.67%), Postives = 99/171 (57.89%), Query Frame = 0


Query: 20  DELEKGGKVYLVYPVIEQSEQLPQLHAASEGLQSISYRFQDYNCGLLHGKMKSDEKEEAL 79
           +EL++GG+V+ V         LP++    E +  +   F D +  + HGK  S + EE +
Sbjct: 474 NELDRGGQVFYV---------LPRIKGLEEVMDFLEEAFPDIDIAMAHGKQYSKQLEETM 533

Query: 80  RRFRNGDTQILLSTQVIEIGVDVPDASMMVVMNAERFGIAQLHQLRGRVGRGMKKSRCIL 139
            RF  G  +IL+ T ++E G+D+ +A+ +++ + ++FG+AQL+QLRGRVGR  K++   L
Sbjct: 534 ERFAQGKIKILICTNIVESGLDIQNANTIIIQDVQQFGLAQLYQLRGRVGRADKEAHAYL 593

Query: 140 VASTSSSLS-----RLKVLENSSD---GFHLAEVDLLLRGPGDLLGKKQSG 183
                S LS     RL  LE   +   GF LAE D+ +RG G + G++Q+G
Sbjct: 594 FYPDKSLLSDQALERLSALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTG 635

[Close]

BLAST of Lsi04G011540 vs. TAIR 10
Match: AT3G22330.1 (putative mitochondrial RNA helicase 2 )

HSP 1 Score: 52.0 bits (123), Expect = 7.9e-07
Identity = 38/137 (27.74%), Postives = 63/137 (45.99%), Query Frame = 0


Query: 18  MLDELEKGGKVYLVYPVIEQSEQLPQLHAASEGLQSISYRFQDYNCGLLHGKMKSDEKEE 77
           ++ E  KGGK  +       +++L    A S            + C  LHG +   ++E 
Sbjct: 342 LVTEHAKGGKCIVFTQTKRDADRLSYALARS------------FKCEALHGDISQSQRER 401

Query: 78  ALRRFRNGDTQILLSTQVIEIGVDVPDASMMVVMNAERFGIAQLHQLRGRVGRGMKKSRC 137
            L  FR+G   IL++T V   G+DVP+  +++           +H+  GR GR  KK   
Sbjct: 402 TLAGFRDGHFNILVATDVAARGLDVPNVDLIIHYELPNNTETFVHR-TGRTGRAGKKGSA 461

Query: 138 ILVASTSSSLSRLKVLE 155
           IL+ S   S + +K++E
Sbjct: 462 ILIYSQDQSRA-VKIIE 464

[Close]

BLAST of Lsi04G011540 vs. TAIR 10
Match: AT3G22310.1 (putative mitochondrial RNA helicase 1 )

HSP 1 Score: 50.4 bits (119), Expect = 2.3e-06
Identity = 27/82 (32.93%), Postives = 43/82 (52.44%), Query Frame = 0


Query: 59  QDYNCGLLHGKMKSDEKEEALRRFRNGDTQILLSTQVIEIGVDVPDASMMVVMNAERFGI 118
           + Y C  LHG +   ++E  L  FR+G+  IL++T V   G+DVP+  +++         
Sbjct: 383 KSYKCEALHGDISQAQRERTLAGFRDGNFSILVATDVAARGLDVPNVDLVIHYELPNNTE 442

Query: 119 AQLHQLRGRVGRGMKKSRCILV 141
             +H+  GR GR  KK   IL+
Sbjct: 443 TFVHR-TGRTGRAGKKGSAILI 463

The following BLAST results are available for this feature:

BLAST of Lsi04G011540 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
F4INA9	4.9e-94	72.34	ATP-dependent DNA helicase homolog RECG, chloroplastic OS=Arabidopsis thaliana O...	[more]
Q55681	2.6e-47	48.02	ATP-dependent DNA helicase RecG OS=Synechocystis sp. (strain PCC 6803 / Kazusa) ...	[more]
Q54900	8.2e-41	46.81	ATP-dependent DNA helicase RecG OS=Streptococcus pneumoniae serotype 4 (strain A...	[more]
O34942	1.1e-40	46.67	ATP-dependent DNA helicase RecG OS=Bacillus subtilis (strain 168) OX=224308 GN=r...	[more]
O50581	1.8e-40	43.15	ATP-dependent DNA helicase RecG OS=Staphylococcus aureus (strain NCTC 8325 / PS ...	[more]

BLAST of Lsi04G011540 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3C041	1.0e-110	92.14	DNA helicase OS=Cucumis melo OX=3656 GN=LOC103495086 PE=3 SV=1	[more]
A0A6J1IFJ2	3.0e-110	91.27	DNA helicase OS=Cucurbita maxima OX=3661 GN=LOC111472714 PE=3 SV=1	[more]
A0A6J1IDF6	3.0e-110	91.27	DNA helicase OS=Cucurbita maxima OX=3661 GN=LOC111472714 PE=3 SV=1	[more]
A0A6J1FSV3	5.1e-110	90.83	DNA helicase OS=Cucurbita moschata OX=3662 GN=LOC111446985 PE=3 SV=1	[more]
A0A6J1FUH2	5.1e-110	90.83	DNA helicase OS=Cucurbita moschata OX=3662 GN=LOC111446985 PE=3 SV=1	[more]

BLAST of Lsi04G011540 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_031742292.1	9.4e-111	92.58	ATP-dependent DNA helicase homolog RECG, chloroplastic isoform X2 [Cucumis sativ...	[more]
XP_011659838.1	9.4e-111	92.58	ATP-dependent DNA helicase homolog RECG, chloroplastic isoform X1 [Cucumis sativ...	[more]
XP_008454766.1	2.1e-110	92.14	PREDICTED: ATP-dependent DNA helicase homolog RECG, chloroplastic [Cucumis melo]	[more]
XP_022974240.1	6.1e-110	91.27	ATP-dependent DNA helicase homolog RECG, chloroplastic isoform X2 [Cucurbita max...	[more]
XP_022974144.1	6.1e-110	91.27	ATP-dependent DNA helicase homolog RECG, chloroplastic isoform X1 [Cucurbita max...	[more]

BLAST of Lsi04G011540 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G01440.1	3.5e-95	72.34	DEAD/DEAH box RNA helicase family protein	[more]
AT3G02060.1	1.9e-24	35.67	DEAD/DEAH box helicase, putative	[more]
AT3G02060.2	1.9e-24	35.67	DEAD/DEAH box helicase, putative	[more]
AT3G22330.1	7.9e-07	27.74	putative mitochondrial RNA helicase 2	[more]
AT3G22310.1	2.3e-06	32.93	putative mitochondrial RNA helicase 1	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001650	Helicase, C-terminal	SMART	SM00490	helicmild6	coord: 35..132 e-value: 4.7E-19 score: 79.3
IPR001650	Helicase, C-terminal	PFAM	PF00271	Helicase_C	coord: 19..131 e-value: 3.9E-19 score: 69.0
IPR001650	Helicase, C-terminal	PROSITE	PS51194	HELICASE_CTER	coord: 4..168 score: 15.31903
IPR027417	P-loop containing nucleoside triphosphate hydrolase	GENE3D	3.40.50.300		coord: 5..217 e-value: 7.2E-58 score: 197.6
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	52540	P-loop containing nucleoside triphosphate hydrolases	coord: 11..186
None	No IPR available	PANTHER	PTHR14025:SF30	ATP-DEPENDENT DNA HELICASE HOMOLOG RECG, CHLOROPLASTIC	coord: 16..245
None	No IPR available	PANTHER	PTHR14025	FANCONI ANEMIA GROUP M FANCM FAMILY MEMBER	coord: 16..245

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi04G011540.1	Lsi04G011540.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0032508	DNA duplex unwinding
biological_process	GO:0006310	DNA recombination
biological_process	GO:0006281	DNA repair
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0016887	ATP hydrolysis activity
molecular_function	GO:0003678	DNA helicase activity
molecular_function	GO:0003676	nucleic acid binding