Lsi04G011420 (gene) Bottle gourd (USVL1VR-Ls) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.CTTAAACGCCCGCCCACCACCATCTTCCTCTCTCTCTTTTTTTCAAAACTCTTTCCCTTTTGGCCGCCATGGGAAACACCTTTGGAGTCAAGAAGACGGTGAAGGTCATGAACATCTCCGGCGAGACGATGAAACTAAACACCCCGATTCAAGCTGGAGATGTCGTCAAGGATTATCCCGGCTTTGTTCTACTCGAATCCGAGGCCGTGAAGCACTACGGAGTTCGAGCAAAGCCATTAGAGCTCCATCAGAAGCTCAGTACGAAGAGACTTTATTTCCTCGTAGAACTGCCTAAAGTTCCAAAAGAACAGGTTTGAAACTAAAGAGTTTAAGTTGATAGGTTAGAGTAACCTAATGTTTTATTCGTATTCATAACATTTCCTCCCTTTTTAGAACTCGAGCATTACCATTGAGACCCGACAAATAGTTGTTTCCATGTAAATTTAATGTTATATTAGTACTATTTTTTTTTAACATAGGCTCCACGACGAGTACGGTCGGCGATCAACATGAGCGCGAAGGATAGGCTAGAGAGCTTGATGTTGGCACGACGGTCAGCATCGGACCTAACTATCATGAAACCAAAGAGTGTATTAGCGGAGGAGGGTGGTGGAGAGAATGAGGGATCGGGATCGGGATCAGGATCAGGAGCGACACGGGTGAAGGTACGGTTGCCGAAGGCCGAGGTGGAAAGGTTGTTGAAGGAGAGCAAAGATGAGGCAGAGGCAGCAGAAAGGATTATGGGATTGTACAAAACAAGAGAAAATGTTTGTGGAAATGATCACAAGGAGAAGGAGAAGAAGGATATCATCAAGCCACGTGAGGTGCGTGTGCCTTTTATTTTACTTCTTTTAAATATTGCAATTTACAATATTCATAAAATTTCTAAGTCCATTTTGATGTGTAATGAATTTTATAAGTTAAAAATATATATACAAAAAAAATGGTTAGATTATTTTCAAATTTTATTTGCATATCAATTAATGTTGTGCTAATTTTTTTGGGGACAAAATTTATATTTTTAAAAATAAAGAATTAAAAATATAGAACCCTTATCCATTATGCCCTACATAGTAGATAAAGCCAGAAGGTCATCTAATAGTATATTCAAAAGTGAATTTAAAGCTTTTATCAAATAATTAATGAAAAATTAACGGATTTGAGAAAAAAAAATTGAAAGTTTATATGGAATTTAAAAGAACTAAAATAAATTAAAACCATCAATATAAAAAATATTAAAAATACACTATTACTTCTTGAATTACCAAGCTTTATTACAAAATTGGCAAATAATGGATTTTTTTTTTAAATTCATGTGTGTAACCATTACAACAAAATATTTCAGCTTTCTCATTTACTTTTGAAGTAGAATGTTTAAAAATACTTGAAAAGAAGACCAAAATATTACAAAGGTAAAAATATTCATGTGGGCTAATTCTATTAAAAATTAAAAATTTAATTAATTTAACACATGAGATTAAAATGAACAAATATATGTATACAGATATAACTATACACTCATTAATATTAATTTAAAAATGTAATCAATATTTAATTGGGTTTTTGGTTCTCAAGTAGTTGCACTTTAAAAAAATGAAAGAGTTAGTGACTATAAATTAATTAAATTAAAGATGTAAATTAAAATAGAGGACACCAAGTTGACTCCCTCACCATCCAATGAGTCAATTTTTGTTTGATTTGTGCTTCCTAGAATTTTCCTTTTTCTATTTTAAAAAAATAAGTTACCGTTAAATTAAGAATATTGAAAACTATATAAAATTACTACCAATAATTAGTTTTAAAGTGTATTCGAAGTCGATTTTGAGGGAGTTAAAATGGTTTTGAAGAATCTTTAACTGTTTTAAAAAATTAGACTCTACAACTTTTAGATTGTCGTAAAATGAGATATATTATTTTTTAAATAAATTTTTAATTTACAATTTTATCCTTCAAAATTAAGATTTATTTTATATGTCTAGTATCTTTCTCACATCATCAAAAATTTTTCCTAATTTTTAATAAGTTGAATGCAACAAGTTTTTCTTACATCATACCATATTAATTTTTTAAAATTAAACCCATTTCCAACTTAATAATTAATGTAAAAGAAAATATAATATAATATTGTGAGCAATGATTTTTTTTTTTTTTTTTTGAAGTGCAACATGGGCAATGATTTAAAACACTATAAATTATAAGAAAATTATAATTTTTATTAGTCAGATATATTTAAATTTAAAAAAATTTCAGAGATAGAAAAAATGTCAAATTATTTACAAAAAAAATAGTAAAAGAATACTGATAGACATGGATACACTTCTATCAGCATTTATGAGTAATAAACTTCTATCATTTCTATCACTGATAGACTTCTATCAGCATCTATCACATCTATTTAAAAAATTTGCTATTTTATGTAAATAGTTTCTCTTATTTTTCTATTTTTAAAATTTTCTCTTTTAAGTTATTATATCTAAAACATAGTCATTTATATTTATTTACCAAACACTATAGTCCAAACTTACAAAACCCTAATTTAGTTCATATTATATTTTTAAAAATATAATTATCAACGATTATTTTAAAAGATATAGTAATTTTGAAATAAGTGACAAATTTATTCTTCATAAAAATTAAATAACTTTAAATCTACTCAGTAGAATGATAATGATTTCATTAACGATATTTAATCGAATTAGGATACACCAAGTTGACTCTCACTATCGAATTTGTCAAATTTTGTTTTAATTAGTTGCTTTGTCATCTAACCCATTAATCACAAATTTCTTAGTGTAGCCATCTAATTTGATTACATCTCTTTCATAGAATTTTCTACCCTCAAATTGTTGATATTTCAACTTTCATATGATTCCATGGTTAATTAATATTATTGTTTTTTTTTTTTTGGTCATTGATATGGTTTTTATTTGATTATTAAATTATATTTCAAAATTTTACCCTATTATTCTTGGGTTTTGAACCTAGGTTTTCTTTGGTCTTAAGTCAAAATGTTACATTTTTACTCGAGTTTGATTTGAGTTTTGATTTTATTGTAGATTTCAAAATTTTACCTTTTTAATTCAGAAGACTCTGGTTCTTTTTTGTATTTCTATTAATAAATTTAAAAGAATTAAATTAATTATAAATAAATAGCTTTCATTAATTTTTGTCAATATTAAAATTAATTAACAACTTTACTTCCTAAGTATTTTAAATTAATTAATTAAAAGTATTGAGGATCAAAAGTGAGGTACTATTGAAAAATTCAGAGGTAGATCAAATGAAAACAAAAATCAAAACTCAGGAGTAAAAATATAACCTTTGAAACTTATGGAACAAATGAAATTGAAAATTCAAAACAAAAATGTTGAAATCTAAATAAATACAATATTCAAAGTTGAAAACTTAAATGTAAAAAATGTAACATTTGAAACTTATGGACTAAATAGAAATTAAACATTCCAAAACAAAAATATAACATAATCAAAAGAAAACTATGCTCAAAATTTAATGATTTTTTGTTTGAAAAGCAAAATTTAATTAGAAATTTTTTTGGGTTCTTTCAAATATAGAAAACTAAGTTAAACTATTTACAAAAAATAGCAAGAAAAACACTTATAGACGTTGATGGACTTGTATCAGCATCTATCAGTGATAGACTTCTATCATTTATATCACTAATAGACTTTGATAGACTTCTATCCGCGTCTATCACAACTATAAAAAAAATTTGCTATTTTGTATAAATAGTTTTTTTATTTTTCTATTTTTAAAAATTCTCCATTTAATTGCTCAAACCTGAAAAGGTATTTTTCTCAAATAGTTTTCTTAAAGAAAATAATTCATTAGTTCCTAATAATTTTCTTTTTCCATGGTTTCTAATAATCATTTACTATATTAAAATTTCAAATCTACCCTTAATTCGGATTGTAACTGTCCCACTATTAATTACAATATTTTCTTATGGCGAAGCGATCATTGCTTCCATCTCTTTCATATAGAATTTTCTACTCACGAATCATTGATACAAGCTTTTGTTTTGTTTCATAAATAATTATTATTTCTTTCTATATATCTTTTACATTATTATATTAAAAGTTGGGTTTTTTTTTTTTTTTTTTTTTTTTGAGTTATCAACAAACATGTATGTTGGAGATCAACTTTAAATTACCTTTGTTTTATATATAAATTTTAAAAAATATTTAATAAATATTTAAACTTTAATCTCAAATAAGTGTCCGAATTTTTCTAATAGATTATTGACCTATTAAATTTTTTTCTTTTAACATTCATAAACTCATTAACTAGACAAAAAATGAAAATTTATAGGTCTGGCTTAAAATTTAGTTCTATATCTAATAAATTGGCTATTTTTTTTTTACTTTTCTTAATATATAAATCTATATCCAATCAAATTTTTTTAATATATCTAATCAATCGATTAATCTTGAAAGTTGAGTATTAAAGTTGTAAATTAATCAAAGGTATAGTTAAATGTCTTATTCATTGATTTATGTTGGGATTTGTTTGAGATATAGTTAAAGACCTATTTTTAAGTTGTACTAATTCAAAATTTTAAATCATAAGCCATTAATAATGATATCGTTTTGTATATTTAAATAGAGGATGCAAAATTGACAGTCACCATATAGTCAAGTCAATTTTTGCTTTATTATTGCTTTGTCTGCCAAACCCATTTATTTCAATCTTATCATAATGTGGCCATTTTAATTCTGTCTTTTCCTTACAATATTCTTCCATCATATAGTTGATACAATTAACCTTTAATTATTAGTTTTTCTTCCTTTTTCCTTTTTGTTAAAAAAAAAAAAGTATTTATGACTAGGTATAGCGTTTTAACGGTGGGGCAAATATATTTTGTGCGATTTGATTCTCTTTTTTATTTTTAATTTTATTTTTTGTTTTTTTTAAAATATGTGGGAAGAAATGAATCTCTGTCATTAAAGTTAATAGTTCATATTTAAGGTTAGTTAAGCTAATTTTTTAAGTTGGACACACTCTTGGAACATAGATTTGAGCTTATTTTATTTTATTTTATTCTTTTTATTTTAATTTTATTTAGAACTTAGTATTTCTCATTTTTGGACTATTGTTTAGATTTTGAAACATTTTTAAGTGATGGGAAAGTTAAAATGGTAAAATATTAATATTGTTTTTTTTTTCTTTGTTTTATATAAAATTTTAAAAAAAGAATGGGTTGAAAATGCAGAAGCGACGTGTGAGTTTTATGACGACAATGGAAGTTGGAACTCAGATTGCAGTAACATCTTAGCTAACACAAGAACGACAAGATTCATGAACAAATTCATTAAAGTGATACAGTGACGATCTTTCGAGGGTACTACACGTTACGTCCTTCACTTCTACTTAAAGTATTTGAATCTTGAACAAGCTTTTGTAGAATATAGCTAGATTTACTGCCCTTTATATATACCCATGTACTTATAATTAACTTCATGGTATATATATATATATATATATATATATATATATATATAT CTTAAACGCCCGCCCACCACCATCTTCCTCTCTCTCTTTTTTTCAAAACTCTTTCCCTTTTGGCCGCCATGGGAAACACCTTTGGAGTCAAGAAGACGGTGAAGGTCATGAACATCTCCGGCGAGACGATGAAACTAAACACCCCGATTCAAGCTGGAGATGTCGTCAAGGATTATCCCGGCTTTGTTCTACTCGAATCCGAGGCCGTGAAGCACTACGGAGTTCGAGCAAAGCCATTAGAGCTCCATCAGAAGCTCAGTACGAAGAGACTTTATTTCCTCGTAGAACTGCCTAAAGTTCCAAAAGAACAGGCTCCACGACGAGTACGGTCGGCGATCAACATGAGCGCGAAGGATAGGCTAGAGAGCTTGATGTTGGCACGACGGTCAGCATCGGACCTAACTATCATGAAACCAAAGAGTGTATTAGCGGAGGAGGGTGGTGGAGAGAATGAGGGATCGGGATCGGGATCAGGATCAGGAGCGACACGGGTGAAGGTACGGTTGCCGAAGGCCGAGGTGGAAAGGTTGTTGAAGGAGAGCAAAGATGAGGCAGAGGCAGCAGAAAGGATTATGGGATTGTACAAAACAAGAGAAAATGTTTGTGGAAATGATCACAAGGAGAAGGAGAAGAAGGATATCATCAAGCCACGTGAGGTGCGTGTGCCTTTTATTTTACTTCTTTTAAATATTGCAATTTACAATATTCATAAAATTTCTAAGTCCATTTTGATGTAAGCGACGTGTGAGTTTTATGACGACAATGGAAGTTGGAACTCAGATTGCAGTAACATCTTAGCTAACACAAGAACGACAAGATTCATGAACAAATTCATTAAAGTGATACAGTGACGATCTTTCGAGGGTACTACACGTTACGTCCTTCACTTCTACTTAAAGTATTTGAATCTTGAACAAGCTTTTGTAGAATATAGCTAGATTTACTGCCCTTTATATATACCCATGTACTTATAATTAACTTCATGGTATATATATATATATATATATATATATATATATATATAT ATGGGAAACACCTTTGGAGTCAAGAAGACGGTGAAGGTCATGAACATCTCCGGCGAGACGATGAAACTAAACACCCCGATTCAAGCTGGAGATGTCGTCAAGGATTATCCCGGCTTTGTTCTACTCGAATCCGAGGCCGTGAAGCACTACGGAGTTCGAGCAAAGCCATTAGAGCTCCATCAGAAGCTCAGTACGAAGAGACTTTATTTCCTCGTAGAACTGCCTAAAGTTCCAAAAGAACAGGCTCCACGACGAGTACGGTCGGCGATCAACATGAGCGCGAAGGATAGGCTAGAGAGCTTGATGTTGGCACGACGGTCAGCATCGGACCTAACTATCATGAAACCAAAGAGTGTATTAGCGGAGGAGGGTGGTGGAGAGAATGAGGGATCGGGATCGGGATCAGGATCAGGAGCGACACGGGTGAAGGTACGGTTGCCGAAGGCCGAGGTGGAAAGGTTGTTGAAGGAGAGCAAAGATGAGGCAGAGGCAGCAGAAAGGATTATGGGATTGTACAAAACAAGAGAAAATGTTTGTGGAAATGATCACAAGGAGAAGGAGAAGAAGGATATCATCAAGCCACGTGAGGTGCGTGTGCCTTTTATTTTACTTCTTTTAAATATTGCAATTTACAATATTCATAAAATTTCTAAGTCCATTTTGATGTAA MGNTFGVKKTVKVMNISGETMKLNTPIQAGDVVKDYPGFVLLESEAVKHYGVRAKPLELHQKLSTKRLYFLVELPKVPKEQAPRRVRSAINMSAKDRLESLMLARRSASDLTIMKPKSVLAEEGGGENEGSGSGSGSGATRVKVRLPKAEVERLLKESKDEAEAAERIMGLYKTRENVCGNDHKEKEKKDIIKPREVRVPFILLLLNIAIYNIHKISKSILM Homology
BLAST of Lsi04G011420 vs. ExPASy Swiss-Prot
Match: Q6NLC8 (Uncharacterized protein At1g66480 OS=Arabidopsis thaliana OX=3702 GN=At1g66480 PE=2 SV=1) HSP 1 Score: 153.7 bits (387), Expect = 2.5e-36 Identity = 96/217 (44.24%), Postives = 137/217 (63.13%), Query Frame = 0
BLAST of Lsi04G011420 vs. ExPASy TrEMBL
Match: A0A1S3C0K8 (uncharacterized protein At1g66480 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103495093 PE=4 SV=1) HSP 1 Score: 344.4 bits (882), Expect = 3.6e-91 Identity = 182/198 (91.92%), Postives = 188/198 (94.95%), Query Frame = 0
BLAST of Lsi04G011420 vs. ExPASy TrEMBL
Match: A0A1S3BZC7 (uncharacterized protein At1g66480 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103495093 PE=4 SV=1) HSP 1 Score: 343.2 bits (879), Expect = 8.1e-91 Identity = 181/196 (92.35%), Postives = 187/196 (95.41%), Query Frame = 0
BLAST of Lsi04G011420 vs. ExPASy TrEMBL
Match: A0A6J1FSC9 (uncharacterized protein At1g66480 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111447718 PE=4 SV=1) HSP 1 Score: 302.4 bits (773), Expect = 1.6e-78 Identity = 167/201 (83.08%), Postives = 178/201 (88.56%), Query Frame = 0
BLAST of Lsi04G011420 vs. ExPASy TrEMBL
Match: A0A6J1FVP5 (uncharacterized protein At1g66480 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111447718 PE=4 SV=1) HSP 1 Score: 301.6 bits (771), Expect = 2.7e-78 Identity = 166/199 (83.42%), Postives = 177/199 (88.94%), Query Frame = 0
BLAST of Lsi04G011420 vs. ExPASy TrEMBL
Match: A0A6J1JB09 (uncharacterized protein At1g66480 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111484144 PE=4 SV=1) HSP 1 Score: 300.4 bits (768), Expect = 6.0e-78 Identity = 167/201 (83.08%), Postives = 175/201 (87.06%), Query Frame = 0
BLAST of Lsi04G011420 vs. NCBI nr
Match: XP_038891934.1 (uncharacterized protein At1g66480 [Benincasa hispida]) HSP 1 Score: 352.8 bits (904), Expect = 2.1e-93 Identity = 187/198 (94.44%), Postives = 193/198 (97.47%), Query Frame = 0
BLAST of Lsi04G011420 vs. NCBI nr
Match: XP_008454773.1 (PREDICTED: uncharacterized protein At1g66480 isoform X2 [Cucumis melo]) HSP 1 Score: 344.4 bits (882), Expect = 7.5e-91 Identity = 182/198 (91.92%), Postives = 188/198 (94.95%), Query Frame = 0
BLAST of Lsi04G011420 vs. NCBI nr
Match: XP_008454771.1 (PREDICTED: uncharacterized protein At1g66480 isoform X1 [Cucumis melo]) HSP 1 Score: 343.2 bits (879), Expect = 1.7e-90 Identity = 181/196 (92.35%), Postives = 187/196 (95.41%), Query Frame = 0
BLAST of Lsi04G011420 vs. NCBI nr
Match: XP_004140437.1 (uncharacterized protein At1g66480 [Cucumis sativus] >KGN50757.2 hypothetical protein Csa_021521 [Cucumis sativus]) HSP 1 Score: 325.1 bits (832), Expect = 4.7e-85 Identity = 178/200 (89.00%), Postives = 185/200 (92.50%), Query Frame = 0
BLAST of Lsi04G011420 vs. NCBI nr
Match: XP_022942789.1 (uncharacterized protein At1g66480 isoform X2 [Cucurbita moschata]) HSP 1 Score: 302.4 bits (773), Expect = 3.3e-78 Identity = 167/201 (83.08%), Postives = 178/201 (88.56%), Query Frame = 0
BLAST of Lsi04G011420 vs. TAIR 10
Match: AT2G01340.1 (Encodes a protein whose expression is responsive to nematode infection. ) HSP 1 Score: 177.9 bits (450), Expect = 8.7e-45 Identity = 101/176 (57.39%), Postives = 126/176 (71.59%), Query Frame = 0
BLAST of Lsi04G011420 vs. TAIR 10
Match: AT1G71015.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G01340.1); Has 85 Blast hits to 85 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 85; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 173.3 bits (438), Expect = 2.1e-43 Identity = 94/171 (54.97%), Postives = 126/171 (73.68%), Query Frame = 0
BLAST of Lsi04G011420 vs. TAIR 10
Match: AT1G66480.1 (plastid movement impaired 2 ) HSP 1 Score: 153.7 bits (387), Expect = 1.8e-37 Identity = 96/217 (44.24%), Postives = 137/217 (63.13%), Query Frame = 0
BLAST of Lsi04G011420 vs. TAIR 10
Match: AT5G37840.1 (BEST Arabidopsis thaliana protein match is: plastid movement impaired 2 (TAIR:AT1G66480.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). ) HSP 1 Score: 131.3 bits (329), Expect = 9.3e-31 Identity = 81/176 (46.02%), Postives = 110/176 (62.50%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
Relationships
The following mRNA feature(s) are a part of this gene:
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