Lsi04G011330 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi04G011330
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	proline-rich family protein
Location	chr04: 15258806 .. 15259183 (-)
RNA-Seq Expression	Lsi04G011330
Synteny	Lsi04G011330

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTCATCCAACCCCAACCTTGTTATGCTCTCCTTATCCTCAGCTTGTTCTTGATTCTTTCAATCAATGTACAATCCACCCATGGCTTGATCTCCTCCAAGAAGCTTGACAAATCCGCCGGTGGGGACGATCCGAGCGTCAAGTGTACACCATGCACCCGTTATCCACTACCGCCACCACCTCCACCGAAGAAACCCCCACCGGCTTATTGCCCTCCGCCACCTCCTCCTCCGTCGTCTTTCATATACATGCTCGGCCCGCCGGGAAACTTGTATCCCATCGACCAGGACTTCGCAGGGGCTGATCGGAGGAGGATGGCCGTGGAGTTGCCGATTGTTGCTCTCTTTGGACTGATTGTGTTTATTGCTTTGTGGTGA

mRNA sequence

ATGTTCATCCAACCCCAACCTTGTTATGCTCTCCTTATCCTCAGCTTGTTCTTGATTCTTTCAATCAATGTACAATCCACCCATGGCTTGATCTCCTCCAAGAAGCTTGACAAATCCGCCGGTGGGGACGATCCGAGCGTCAAGTGTACACCATGCACCCGTTATCCACTACCGCCACCACCTCCACCGAAGAAACCCCCACCGGCTTATTGCCCTCCGCCACCTCCTCCTCCGTCGTCTTTCATATACATGCTCGGCCCGCCGGGAAACTTGTATCCCATCGACCAGGACTTCGCAGGGGCTGATCGGAGGAGGATGGCCGTGGAGTTGCCGATTGTTGCTCTCTTTGGACTGATTGTGTTTATTGCTTTGTGGTGA

Coding sequence (CDS)

ATGTTCATCCAACCCCAACCTTGTTATGCTCTCCTTATCCTCAGCTTGTTCTTGATTCTTTCAATCAATGTACAATCCACCCATGGCTTGATCTCCTCCAAGAAGCTTGACAAATCCGCCGGTGGGGACGATCCGAGCGTCAAGTGTACACCATGCACCCGTTATCCACTACCGCCACCACCTCCACCGAAGAAACCCCCACCGGCTTATTGCCCTCCGCCACCTCCTCCTCCGTCGTCTTTCATATACATGCTCGGCCCGCCGGGAAACTTGTATCCCATCGACCAGGACTTCGCAGGGGCTGATCGGAGGAGGATGGCCGTGGAGTTGCCGATTGTTGCTCTCTTTGGACTGATTGTGTTTATTGCTTTGTGGTGA

Protein sequence

MFIQPQPCYALLILSLFLILSINVQSTHGLISSKKLDKSAGGDDPSVKCTPCTRYPLPPPPPPKKPPPAYCPPPPPPPSSFIYMLGPPGNLYPIDQDFAGADRRRMAVELPIVALFGLIVFIALW

Homology

[Close]

BLAST of Lsi04G011330 vs. ExPASy TrEMBL
Match: A0A6J1FVH5 (probable glycosyltransferase 4 OS=Cucurbita moschata OX=3662 GN=LOC111447243 PE=4 SV=1)

HSP 1 Score: 176.0 bits (445), Expect = 9.7e-41
Identity = 96/125 (76.80%), Postives = 104/125 (83.20%), Query Frame = 0


Query: 1   MFIQPQPCYALLILS-LFLILSINVQSTHGLISSKKLDKSAGGDDPSVKCTPCTRYPLPP 60
           M IQ +P YAL ILS  F  LS NV  THG +SSKKLD+S GGDDPSVKCTPCT  P PP
Sbjct: 1   MCIQTRPRYALFILSFFFFFLSTNVVLTHGFLSSKKLDESTGGDDPSVKCTPCTHNPPPP 60

Query: 61  PPPPKKPPPAYCPPPPPPPSSFIYMLGPPGNLYPIDQDFAGADRRRMAVELPIVALFGLI 120
           PPPPKKP PAYCPPPPPPPSSFIY+LGPPGNLYPID+DFAGADRRR+AVEL  VALFGLI
Sbjct: 61  PPPPKKPSPAYCPPPPPPPSSFIYILGPPGNLYPIDRDFAGADRRRVAVELSAVALFGLI 120

Query: 121 VFIAL 125
            F+ +
Sbjct: 121 GFLGV 125

[Close]

BLAST of Lsi04G011330 vs. ExPASy TrEMBL
Match: A0A0A0KSV7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G283490 PE=4 SV=1)

HSP 1 Score: 167.5 bits (423), Expect = 3.4e-38
Identity = 92/124 (74.19%), Postives = 99/124 (79.84%), Query Frame = 0


Query: 1   MFIQPQPCYALLILSLFLILSINVQSTHGLISSKKLDKSAGGDDPSVKCTPCTRYPLPPP 60
           M IQP P Y+LLIL  FLILSIN+Q  HG ISSKKLD+     D SVKCTPCTRY  PPP
Sbjct: 1   MCIQPHPFYSLLILHFFLILSINLQPIHGFISSKKLDEPIPRHDSSVKCTPCTRYSPPPP 60

Query: 61  PPPKKPPPAYCPPPPPPPSSFIYMLGPPGNLYPIDQDFAGADRRRMAVELPIVALFGLIV 120
           PPPKKPPP YCPPPP PPSSFIYMLGPP NLYPI+ DFA ADRR +A+ELP+VA FGLI 
Sbjct: 61  PPPKKPPPIYCPPPPLPPSSFIYMLGPPVNLYPIEHDFASADRRSVAMELPVVAFFGLIG 120

Query: 121 FIAL 125
            IAL
Sbjct: 121 LIAL 124

[Close]

BLAST of Lsi04G011330 vs. ExPASy TrEMBL
Match: A0A6J1DRJ1 (acrosin-like OS=Momordica charantia OX=3673 GN=LOC111022525 PE=4 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 7.2e-36
Identity = 94/127 (74.02%), Postives = 103/127 (81.10%), Query Frame = 0


Query: 1   MFIQPQPCYALLILSLFLILSINVQSTHGLISSKKLDKSAGGDDPSVKCTPCTRY--PLP 60
           M+IQ Q      IL+L LILSINV + HGLISS KLD S GGD  +VKCTPCTRY  P P
Sbjct: 1   MWIQTQ------ILNLLLILSINVVTIHGLISSNKLDGSTGGDS-TVKCTPCTRYNPPPP 60

Query: 61  PPPPPKKPPPAYCPPPPPPPSSFIYMLGPPGNLYPIDQDFAGADRRRMAVELPIVALFGL 120
           PPPPPKKPP +YCPPPPPPPSSFIYMLGPPGNLYPI QDFAG  RRR+AVELP+VAL GL
Sbjct: 61  PPPPPKKPPSSYCPPPPPPPSSFIYMLGPPGNLYPIGQDFAGG-RRRVAVELPVVALLGL 119

Query: 121 IVFIALW 126
           + FIA+W
Sbjct: 121 MGFIAVW 119

[Close]

BLAST of Lsi04G011330 vs. ExPASy TrEMBL
Match: A5B8N9 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_01s0011g04830 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 1.6e-14
Identity = 62/129 (48.06%), Postives = 82/129 (63.57%), Query Frame = 0


Query: 10  ALLILSLFLILSINVQSTHGLISSKKLDKS--AGGDDPSVKC-------TPCTRYPLP-- 69
           +L +L++FL+++      +G  +S+KLD+S  +G  D  VKC        PC + P P  
Sbjct: 10  SLKLLTVFLVVAAIATPVNG-SNSRKLDESPASGSPDAGVKCGGCSSCQNPCNQSPPPPP 69

Query: 70  ---PPPPPKKPPPAYCPPPPPPPSSFIYMLGPPGNLYPIDQDFAGADRRRMAVELPIVAL 125
              PPPPPKKP   YCPPPPPPP+SF+Y+ GPPG LYPIDQD+ GA R  M V LPI+A 
Sbjct: 70  PPSPPPPPKKPRAPYCPPPPPPPASFLYVTGPPGTLYPIDQDYGGAGRNFM-VGLPILAG 129

[Close]

BLAST of Lsi04G011330 vs. ExPASy TrEMBL
Match: A0A438C166 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=CK203_011633 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 1.6e-14
Identity = 62/129 (48.06%), Postives = 82/129 (63.57%), Query Frame = 0


Query: 10  ALLILSLFLILSINVQSTHGLISSKKLDKS--AGGDDPSVKC-------TPCTRYPLP-- 69
           +L +L++FL+++      +G  +S+KLD+S  +G  D  VKC        PC + P P  
Sbjct: 10  SLKLLTVFLVVAAIATPVNG-SNSRKLDESPASGSPDAGVKCGGCSSCQNPCNQSPPPPP 69

Query: 70  ---PPPPPKKPPPAYCPPPPPPPSSFIYMLGPPGNLYPIDQDFAGADRRRMAVELPIVAL 125
              PPPPPKKP   YCPPPPPPP+SF+Y+ GPPG LYPIDQD+ GA R  M V LPI+A 
Sbjct: 70  PPSPPPPPKKPRAPYCPPPPPPPASFLYVTGPPGTLYPIDQDYGGAGRNFM-VGLPILAG 129

[Close]

BLAST of Lsi04G011330 vs. NCBI nr
Match: KAG6600825.1 (hypothetical protein SDJN03_06058, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 178.7 bits (452), Expect = 3.1e-41
Identity = 94/124 (75.81%), Postives = 103/124 (83.06%), Query Frame = 0


Query: 1   MFIQPQPCYALLILSLFLILSINVQSTHGLISSKKLDKSAGGDDPSVKCTPCTRYPLPPP 60
           M IQ +P YAL I S F +LSINV  THG +SSKKLD+S GGDDP VKCTPCT  P PPP
Sbjct: 1   MCIQTRPRYALFIFSFFFVLSINVVLTHGFLSSKKLDESTGGDDPRVKCTPCTHNPPPPP 60

Query: 61  PPPKKPPPAYCPPPPPPPSSFIYMLGPPGNLYPIDQDFAGADRRRMAVELPIVALFGLIV 120
           PPPKKP PAYCPPPPPPPSSFIY+LGPPGNLYPID+DFAGADRRR+ VEL  VALFGLI 
Sbjct: 61  PPPKKPSPAYCPPPPPPPSSFIYILGPPGNLYPIDRDFAGADRRRVVVELSAVALFGLIG 120

Query: 121 FIAL 125
           F+ +
Sbjct: 121 FLGV 124

[Close]

BLAST of Lsi04G011330 vs. NCBI nr
Match: XP_023546806.1 (formin-like protein 20 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 177.2 bits (448), Expect = 9.0e-41
Identity = 96/125 (76.80%), Postives = 105/125 (84.00%), Query Frame = 0


Query: 1   MFIQPQPCYALLILSLFL-ILSINVQSTHGLISSKKLDKSAGGDDPSVKCTPCTRYPLPP 60
           M IQ +P YAL I S F+  LSINV  THG +SSKKLD+S GGDDPSVKCTPCT  P PP
Sbjct: 1   MCIQTRPRYALFIFSFFIFFLSINVVLTHGFLSSKKLDESTGGDDPSVKCTPCTHNPPPP 60

Query: 61  PPPPKKPPPAYCPPPPPPPSSFIYMLGPPGNLYPIDQDFAGADRRRMAVELPIVALFGLI 120
           PPPPKKP PAYCPPPPPPPSSFIY+LGPPGNLYPID+DFAGADRRR+AVEL  VALFGLI
Sbjct: 61  PPPPKKPSPAYCPPPPPPPSSFIYILGPPGNLYPIDRDFAGADRRRVAVELSAVALFGLI 120

Query: 121 VFIAL 125
            F+ +
Sbjct: 121 GFLGV 125

[Close]

BLAST of Lsi04G011330 vs. NCBI nr
Match: KAG7031461.1 (hypothetical protein SDJN02_05501, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 176.4 bits (446), Expect = 1.5e-40
Identity = 93/124 (75.00%), Postives = 102/124 (82.26%), Query Frame = 0


Query: 1   MFIQPQPCYALLILSLFLILSINVQSTHGLISSKKLDKSAGGDDPSVKCTPCTRYPLPPP 60
           M IQ +P YAL I S   +LSINV  THG +SSKKLD+S GGDDP VKCTPCT  P PPP
Sbjct: 1   MCIQTRPRYALFIFSFLFVLSINVVLTHGFLSSKKLDESTGGDDPRVKCTPCTHNPPPPP 60

Query: 61  PPPKKPPPAYCPPPPPPPSSFIYMLGPPGNLYPIDQDFAGADRRRMAVELPIVALFGLIV 120
           PPPKKP PAYCPPPPPPPSSFIY+LGPPGNLYPID+DFAGADRRR+ VEL  VALFGLI 
Sbjct: 61  PPPKKPSPAYCPPPPPPPSSFIYILGPPGNLYPIDRDFAGADRRRVVVELSAVALFGLIG 120

Query: 121 FIAL 125
           F+ +
Sbjct: 121 FLGV 124

[Close]

BLAST of Lsi04G011330 vs. NCBI nr
Match: XP_022942055.1 (probable glycosyltransferase 4 [Cucurbita moschata])

HSP 1 Score: 176.0 bits (445), Expect = 2.0e-40
Identity = 96/125 (76.80%), Postives = 104/125 (83.20%), Query Frame = 0


Query: 1   MFIQPQPCYALLILS-LFLILSINVQSTHGLISSKKLDKSAGGDDPSVKCTPCTRYPLPP 60
           M IQ +P YAL ILS  F  LS NV  THG +SSKKLD+S GGDDPSVKCTPCT  P PP
Sbjct: 1   MCIQTRPRYALFILSFFFFFLSTNVVLTHGFLSSKKLDESTGGDDPSVKCTPCTHNPPPP 60

Query: 61  PPPPKKPPPAYCPPPPPPPSSFIYMLGPPGNLYPIDQDFAGADRRRMAVELPIVALFGLI 120
           PPPPKKP PAYCPPPPPPPSSFIY+LGPPGNLYPID+DFAGADRRR+AVEL  VALFGLI
Sbjct: 61  PPPPKKPSPAYCPPPPPPPSSFIYILGPPGNLYPIDRDFAGADRRRVAVELSAVALFGLI 120

Query: 121 VFIAL 125
            F+ +
Sbjct: 121 GFLGV 125

[Close]

BLAST of Lsi04G011330 vs. NCBI nr
Match: KGN50831.1 (hypothetical protein Csa_004723 [Cucumis sativus])

HSP 1 Score: 167.5 bits (423), Expect = 7.1e-38
Identity = 92/124 (74.19%), Postives = 99/124 (79.84%), Query Frame = 0


Query: 1   MFIQPQPCYALLILSLFLILSINVQSTHGLISSKKLDKSAGGDDPSVKCTPCTRYPLPPP 60
           M IQP P Y+LLIL  FLILSIN+Q  HG ISSKKLD+     D SVKCTPCTRY  PPP
Sbjct: 1   MCIQPHPFYSLLILHFFLILSINLQPIHGFISSKKLDEPIPRHDSSVKCTPCTRYSPPPP 60

Query: 61  PPPKKPPPAYCPPPPPPPSSFIYMLGPPGNLYPIDQDFAGADRRRMAVELPIVALFGLIV 120
           PPPKKPPP YCPPPP PPSSFIYMLGPP NLYPI+ DFA ADRR +A+ELP+VA FGLI 
Sbjct: 61  PPPKKPPPIYCPPPPLPPSSFIYMLGPPVNLYPIEHDFASADRRSVAMELPVVAFFGLIG 120

Query: 121 FIAL 125
            IAL
Sbjct: 121 LIAL 124

[Close]

BLAST of Lsi04G011330 vs. TAIR 10
Match: AT1G23040.1 (hydroxyproline-rich glycoprotein family protein )

HSP 1 Score: 68.9 bits (167), Expect = 3.2e-12
Identity = 48/117 (41.03%), Postives = 68/117 (58.12%), Query Frame = 0


Query: 26  STHGLISSKKLDKSAGGDDPSVKCTP-CTRYPLPPPPPPKKPPPAYCPP----------- 85
           S+   + ++KLD+     DP +KC+P C + P PP PPP  PPP  CPP           
Sbjct: 33  SSDASLEARKLDEV----DP-IKCSPSCIQNPPPPSPPPPSPPPPACPPPPALPPPPPKK 92

Query: 86  -----PPPPPSSFIYMLGPPGNLYPIDQDF-AGADRRRMAVELPIVALFGLIVFIAL 125
                PPPPP++F+Y+ GPPGNLYP+D+ F A A +  M V+L  +  FG++ F+ L
Sbjct: 93  VSSYCPPPPPANFLYITGPPGNLYPVDEQFGAAAGKSFMVVKLSGLIAFGIMAFLIL 144

[Close]

BLAST of Lsi04G011330 vs. TAIR 10
Match: AT1G70990.1 (proline-rich family protein )

HSP 1 Score: 63.5 bits (153), Expect = 1.3e-10
Identity = 45/93 (48.39%), Postives = 54/93 (58.06%), Query Frame = 0


Query: 43  DDPSVKCTPCTR-YPLPPPPPPKKPPPAY-CPPP------------PPPPSSFIYMLGPP 102
           +DP +KCTPC +  P P PPPP  PPP+  CPPP            PPPPS++IYM GPP
Sbjct: 79  EDP-IKCTPCLQNIPPPSPPPPSPPPPSQACPPPPLPPSPPKKSYCPPPPSTYIYMTGPP 138

Query: 103 GNLYPIDQDFAGADRRRMAVELPIVALFGLIVF 122
           G LYPIDQ F  A    +     +V + GLI F
Sbjct: 139 GELYPIDQQFGAA----VTKSFTVVKISGLIAF 166

[Close]

BLAST of Lsi04G011330 vs. TAIR 10
Match: AT1G02405.1 (proline-rich family protein )

HSP 1 Score: 41.6 bits (96), Expect = 5.5e-04
Identity = 35/83 (42.17%), Postives = 50/83 (60.24%), Query Frame = 0


Query: 45  PSVKCTPCTRYPLPPPPPPKK---PPPAYCPPPPPPPSSFIYMLGPPGNLYPIDQDFAGA 104
           P   CTP    P P PPPPKK   PP    PPPPPPP ++++   PPG+LYPI +++ GA
Sbjct: 56  PPPSCTPSP--PPPSPPPPKKSSCPPSPLPPPPPPPPPNYVFTY-PPGDLYPI-ENYYGA 115

Query: 105 DRRRMAVELPIVALFGLIVFIAL 125
                +  +  + +FG++VF+ L
Sbjct: 116 AVAVESFSVMKLFVFGVMVFLIL 134

The following BLAST results are available for this feature:

BLAST of Lsi04G011330 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi04G011330 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FVH5	9.7e-41	76.80	probable glycosyltransferase 4 OS=Cucurbita moschata OX=3662 GN=LOC111447243 PE=...	[more]
A0A0A0KSV7	3.4e-38	74.19	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G283490 PE=4 SV=1	[more]
A0A6J1DRJ1	7.2e-36	74.02	acrosin-like OS=Momordica charantia OX=3673 GN=LOC111022525 PE=4 SV=1	[more]
A5B8N9	1.6e-14	48.06	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_01s0011g04830 PE=4 SV=...	[more]
A0A438C166	1.6e-14	48.06	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=CK203_011633 PE=4 SV=1	[more]

BLAST of Lsi04G011330 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6600825.1	3.1e-41	75.81	hypothetical protein SDJN03_06058, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_023546806.1	9.0e-41	76.80	formin-like protein 20 [Cucurbita pepo subsp. pepo]	[more]
KAG7031461.1	1.5e-40	75.00	hypothetical protein SDJN02_05501, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_022942055.1	2.0e-40	76.80	probable glycosyltransferase 4 [Cucurbita moschata]	[more]
KGN50831.1	7.1e-38	74.19	hypothetical protein Csa_004723 [Cucumis sativus]	[more]

BLAST of Lsi04G011330 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G23040.1	3.2e-12	41.03	hydroxyproline-rich glycoprotein family protein	[more]
AT1G70990.1	1.3e-10	48.39	proline-rich family protein	[more]
AT1G02405.1	5.5e-04	42.17	proline-rich family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 52..73
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 51..73
None	No IPR available	PANTHER	PTHR35094	LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 2	coord: 12..125
None	No IPR available	PANTHER	PTHR35094:SF1	LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 2	coord: 12..125

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi04G011330.1	Lsi04G011330.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0016740	transferase activity