Lsi04G011140 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi04G011140
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	cell number regulator 2-like
Location	chr04: 14387628 .. 14391933 (-)
RNA-Seq Expression	Lsi04G011140
Synteny	Lsi04G011140

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CAGTGTTAAATTTTTTGGTTGTATTTTTTTAAAGATAAAAAAGTTATGGCCAGCGCGGGCGGTATTCCGGTGAACTCGGCAAATGGGTCCCCGTGGTCCAGCGGCCTCTGTGATTGCTTCTCCGACATGGGATCATGTAAATTCATTCTCCCTCTACTTTATTCTATCTATTACATGTATGTTTATGAGTGATTTTTTACGGATAAAATTACCGCTATTTTGTGTATATGAGTGATTTTCGATCGTTCACTTGAGAGGTATTAGATAAATATGCAAGGTTTTATCTCAAAATTAATTGGCGATATTAAGAATAAACTCATGTATCTGACTCAATACTCGTTTGAGCTTCATGAGCAATGATTACCATATTTAGTAAACAAAATTTCATTTCAAAATCAATTGACAATAAATAAAAAAAAAAAGTAACTCATCTTTCTATAGTGGGATCCTCGATAAGAGGTGATTTTTTTAAAATATTTTTGTCAAATAATTAAGATTTTTGCTCTCATCTTTGTGATTCTTTTAAATGATGGTAGTGGTCAATCACTTGGGAAGTAATTTTCGAGTAATTTTTTAGTCATTTAAATTATAAAAATACCTCTAAAATATTATTAGATTGGTTACAAATTTACCTCCAAACTTTGAAAAGTTTCCTTTTATTTAACCCTTGAAGTTTAAAGTTTTTTCATAACAACTATCGAAAACTTTTGTCGTTAAATTCATGGAAAGAATGTTTGTATTACTTAATTGAACAAACAACATATGAAAATAAATTTGGAGACAAGTTAGTAAAAAAATCTCAAATGACAGAACAAAAATTGGGAGCATGGGGTTGAAAGGAAGAAGACAAAAATACACAAAATGTACCGTATAGAGATGCGTTGTGTATTTTTCTTCATGTATGTGTTTAGATTTGTTCACATAAGCAAATACAAATTTTTCGTCTATGAATTTAACGACAAAACCTTATTATGATCAAACAAGTTTCAAACTTCAAGGATTAAAGTAAAATTCTTAAAAGTTTAGGAATATAATTGAAACCAACTTCATAATTTAAGAGTATTTTTATTTATTTATGTTTCCTTTGTAATTATTTTTTAATTTGTTAATTATGTAATATTTATGCTATAATGTCTCATTTAACTCTTTTCATTTTTTAGGTTGTTGTACGATATGGTGTCCATGTGTGCCTTTTGGGCAAGCCTCAGAGATTATAGATGAAGGATCAACTTGTAAGCTTTAATTCAACAATTGTTTAATTAAGTTCTACTAAACCTATCATCTAACAAAATATATACAAACATAATATTCTAAAGATTCTATAAGGAAAAAAAATCTTTAAAAAAATATCTATTTTTTTCATTAAAGACTTTTTGTGAGTTAAATTACAAGTTTAATTTTTTAAATTTTCAAGTTTGTGTCTATTTGGTCACTAAATTTTTAAAAATGTCAAGTATAGGTCATTGGACTATCAATATGTGACAGATAGATCCTTGAACTTTGAAATATATCTATTGGATTCTTAAATTTTCAATTTTATGTTCATTAAGTTTATAACTTTATATGTGTCTGATAGATCCCTAAGGGCCTGTTGCTAGAGAATCTGGATTCTGGTTTATGTTTTCAGATTCACCGAGTTCAGCAAATATGTGTTTGGTAGACAATCCGAATTTTGTTTCTGAAAACTGTTTTTATATTCTATAATCCAAATAGTGCAAATTCTGAAAACAATATTTTTATGTTTTCATTGTTTGCAGATTTTGAATTTTAAATTTTAAAATGTAGAATTATATTAAATAAGGGTAACAACATTTAGAAATACAGTATGTCATGCTATAAACTCATTTCATTTTTTTAAAAAATATAACATGTATTATGTAATGTTTATAAATTATATAATATTTCAAAATAATAATTATATAATTTTTTTAATATAAATCATATTCATAAATAAATTAACAATGGTCTATTATCAACTAAATATTAGTGGGTAACTACAACTAGTTTTGTGATTTATAAATATATAGTATTAAACACATTTTAAATAGGAAAATTATTATAAACAGAAAAAATATCAAACTATTTAAATATAGAAAAATTTCACTGTCTACCGTGATAGACCGCGAAAAAATTCTATCCCTTAAGCGATAGAAAGCGATAGAATTCTATCGCAGTCTATCGCTGATAGACAATAATAAAAAGTTTCTATATTTATAAATAGTTTGACTCATTTTTCTATATTAAAAAATAACCCTTTTAAATAATTATTTAAATTAGAATCCAATTTCTGAGTCAGCTACCAAACACATATCTGAAAACATGAAATACAACTATGTTTTCATTAAATCTCTTACTTTCAAATTTCTGTTTTCAAATTCTCTACTAAATAGTCCTAAATTTTTCAATTTGTATCTAATTAGTCTTTGGCCTATTAAACATATATTTTTTTAATTCACCTAGCTACTAAACATAAATTAAATTAAAATTTTAAAATGTTATTAGACATAAAATTTATTAGTTTCTATTGTGCCTCAAATTTATGTACTTAGTTAACTTAGTTTCAATTTTGTAAAAGTAATCACTATGTTTTAAAAGCTTTAATTATAACATAAATTGCTAATGATAGTTTTTTTAGTAGGAAAATTTTTACAAATAGAAAAAATGTCAAACTATTTACAGAAAATAGCAAAAAAAAAAACACTGATAGACATTGATAGACTTCTGTCAACATTTATTATTGATAGACTTCTATCATTTCTATCATTGATAGACCATGATAAACTTCTATCAGGGTCTACCACCACTATCTAAAAAATTTGTTATTTTGTGTAAATAGTTTTTTTATTTTTCTATTTTTAAAAATTCTCCTTTCTAGTACTATATATATATAGATGTTCTCTCAATTTCTATACCATGATTTTCACTTTTCTTTAAAAAAAAATTGAGTTCTTAGTCAAAATCTAAAATAAAAGACAAAGTTTTAAAAACTACCATTATTAGTTTTCAAAATTTGGCTTGGCTTTTTAAAACATTAATAGAAAGTAGACAACATAGAATAGTCATTTAAAAGTGAAGGTAGAGTTCATAGGCCTAAATTTAAAAAATCAAAAACAAAAAACAAAATGATTTATCAAATCGGGCCGTAGTTTTTAAAAACGTATTTTGCTTTTTGAAGGTGGCTAAGAATTCAAATGTTTCTTTAACAAAGATGAAACTCATTGTAAAGGAAATATTAAAAAACAAGCACAATTTTCAAAAACAAAAAATTAAATGATTATCAAACATGGCCTTATAAATTTGTGACTTCTTATTTTTAAAAATTGTGTTTGCTTTCTCACAATTAGTCTAGCTTAATTTTCAAAAACCAAAAATCGATAAAGCGAAATGAATTATCAAAGAATTGAAGATGACATATATAGTTGTTTATGTGTTGTGTTGTGGATGCAGCCTGTTTTGGTAACGCATTAATTTTTTGGCTGATTGCTTCCTTTACGCCCTGCATTTGCCTTTACACTTGTTCTTACCGATCTCGATTGAGGGCAAAATACCAACTCCAAGAAACACCATGCAATGATTGTTGTGTTCACTTTTGGTGTTGGAGTTGTGCAATGTGTCAAGAGTATCGTGAGCTCAAGAGCCGCGGTTTTGACATGCATATTGGTATTTTCTCTCTTCTCTCTTTTACATACATCTCTTTTTTATAATATATATATATATATATATATATATATATATATATATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGATATCGATCGAGTGTTATGCTCAGGTTGGCAAGAAAATGTGCAAAGACGAAACAGGGGAATAGAGATCCCGCCTATAGTCGAGGGACAAATGAACCGTTGAAGTTAAAAGGCAAGCCATCAGACTAATGATTGTTTTTTTTTTTCCTTAAGTTTTTCCTTGAATTCAATAATGTGTGGAAGTAGAAGGATTCTTAAGTTTATGCTCCTTTTTACCTTTTCATAAATCTTTTTATTGAGGAGAGAAATGACAATTGCACTTTCAAATGAGAATAAGATAAGGTTTATTGATGAATCAATTGAAGAACTGACCAGAAATAATTAGAAAATTGCATTGATGTTAGTGTAACAATGATGTTGTTGCTTCATGGATTATGAATTCAGATTTAGGGAAAATAGCTGCAAGCTTGGTTTATACTGATTCAGCAGAGGATATTTGGGAGAACTCGACCATTTTTAGCAGATTAATTGACCACTGATAGCAAATAAAATTGTAACCATATTTGAGTTATGAAGCCCCAC

mRNA sequence

CAGTGTTAAATTTTTTGGTTGTATTTTTTTAAAGATAAAAAAGTTATGGCCAGCGCGGGCGGTATTCCGGTGAACTCGGCAAATGGGTCCCCGTGGTCCAGCGGCCTCTGTGATTGCTTCTCCGACATGGGATCATGTTGTTGTACGATATGGTGTCCATGTGTGCCTTTTGGGCAAGCCTCAGAGATTATAGATGAAGGATCAACTTCCTGTTTTGGTAACGCATTAATTTTTTGGCTGATTGCTTCCTTTACGCCCTGCATTTGCCTTTACACTTGTTCTTACCGATCTCGATTGAGGGCAAAATACCAACTCCAAGAAACACCATGCAATGATTGTTGTGTTCACTTTTGGTGTTGGAGTTGTGCAATGTGTCAAGAGTATCGTGAGCTCAAGAGCCGCGGTTTTGACATGCATATTGGTTGGCAAGAAAATGTGCAAAGACGAAACAGGGGAATAGAGATCCCGCCTATAGTCGAGGGACAAATGAACCGTTGAAGTTAAAAGATTTAGGGAAAATAGCTGCAAGCTTGGTTTATACTGATTCAGCAGAGGATATTTGGGAGAACTCGACCATTTTTAGCAGATTAATTGACCACTGATAGCAAATAAAATTGTAACCATATTTGAGTTATGAAGCCCCAC

Coding sequence (CDS)

ATGGCCAGCGCGGGCGGTATTCCGGTGAACTCGGCAAATGGGTCCCCGTGGTCCAGCGGCCTCTGTGATTGCTTCTCCGACATGGGATCATGTTGTTGTACGATATGGTGTCCATGTGTGCCTTTTGGGCAAGCCTCAGAGATTATAGATGAAGGATCAACTTCCTGTTTTGGTAACGCATTAATTTTTTGGCTGATTGCTTCCTTTACGCCCTGCATTTGCCTTTACACTTGTTCTTACCGATCTCGATTGAGGGCAAAATACCAACTCCAAGAAACACCATGCAATGATTGTTGTGTTCACTTTTGGTGTTGGAGTTGTGCAATGTGTCAAGAGTATCGTGAGCTCAAGAGCCGCGGTTTTGACATGCATATTGGTTGGCAAGAAAATGTGCAAAGACGAAACAGGGGAATAGAGATCCCGCCTATAGTCGAGGGACAAATGAACCGTTGA

Protein sequence

MASAGGIPVNSANGSPWSSGLCDCFSDMGSCCCTIWCPCVPFGQASEIIDEGSTSCFGNALIFWLIASFTPCICLYTCSYRSRLRAKYQLQETPCNDCCVHFWCWSCAMCQEYRELKSRGFDMHIGWQENVQRRNRGIEIPPIVEGQMNR

Homology

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BLAST of Lsi04G011140 vs. ExPASy Swiss-Prot
Match: B6TYV8 (Cell number regulator 2 OS=Zea mays OX=4577 GN=CNR2 PE=2 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 1.5e-40
Identity = 72/135 (53.33%), Postives = 95/135 (70.37%), Query Frame = 0


Query: 17  WSSGLCDCFSDMGSCCCTIWCPCVPFGQASEIIDEGSTSCFGNALIFWLIASFTPCICLY 76
           WS+GLC+CF D  +CC T  CPC+ FGQ +EIID GSTSC  +  ++ L+   T C C+Y
Sbjct: 47  WSTGLCNCFDDCHNCCVTCVCPCITFGQTAEIIDRGSTSCGTSGALYALVMLLTGCQCVY 106

Query: 77  TCSYRSRLRAKYQLQETPCNDCCVHFWCWSCAMCQEYRELKSRGFDMHIGWQENVQRRNR 136
           +C YR+++RA+Y LQ +PC+DCCVH  C  CA+CQEYRELK RGFDM IGW  N++R+ R
Sbjct: 107 SCFYRAKMRAQYGLQVSPCSDCCVHCCCQCCALCQEYRELKKRGFDMSIGWHANMERQGR 166

Query: 137 -GIEIPPIVEGQMNR 151
               +PP +   M R
Sbjct: 167 AAAAVPPHMHPGMTR 181

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BLAST of Lsi04G011140 vs. ExPASy Swiss-Prot
Match: D9HP25 (Cell number regulator 9 OS=Zea mays OX=4577 GN=CNR9 PE=2 SV=1)

HSP 1 Score: 157.9 bits (398), Expect = 8.9e-38
Identity = 75/151 (49.67%), Postives = 96/151 (63.58%), Query Frame = 0


Query: 1   MASAGGIPVNSANGSPWSSGLCDCFSDMGSCCCTIWCPCVPFGQASEIIDEGSTSCFGNA 60
           ++S G + V    G  WSSGLC C  D G CC T WCPC+ FG+ +EI+D G+TSC    
Sbjct: 26  ISSPGAVAVGPVVGK-WSSGLCACSDDCGLCCLTCWCPCITFGRIAEIVDRGATSCGVAG 85

Query: 61  LIFWLIASFTPCICLYTCSYRSRLRAKYQLQETPCNDCCVHFWCWSCAMCQEYRELKSRG 120
            I+ L+A FT C  +Y+C+YRSR+RA+  L E  C DCCVHF C  CA+ Q+YRELK+RG
Sbjct: 86  TIYTLLACFTGCHWIYSCTYRSRMRAQLGLPEACCCDCCVHFCCEPCALSQQYRELKARG 145

Query: 121 FDMHIGWQENVQRRNRGIEI-PPIVEGQMNR 151
           FD  +GW  N Q+      + PP  EG M R
Sbjct: 146 FDPDLGWDVNAQKAAAAAAMYPPPAEGMMIR 175

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BLAST of Lsi04G011140 vs. ExPASy Swiss-Prot
Match: D9HP26 (Cell number regulator 10 OS=Zea mays OX=4577 GN=CNR10 PE=2 SV=1)

HSP 1 Score: 156.8 bits (395), Expect = 2.0e-37
Identity = 71/146 (48.63%), Postives = 94/146 (64.38%), Query Frame = 0


Query: 2   ASAGGIPVNS-ANGSPWSSGLCDCFSDMGSCCCTIWCPCVPFGQASEIIDEGSTSCFGNA 61
           A   G PV   A  S WSSGL DCF D G CC T WCPC+ FG+ +EI+D G+TSC    
Sbjct: 15  APVTGFPVGGPAASSQWSSGLLDCFDDCGLCCLTCWCPCITFGRVAEIVDRGATSCGTAG 74

Query: 62  LIFWLIASFTPCICLYTCSYRSRLRAKYQLQETPCNDCCVHFWCWSCAMCQEYRELKSRG 121
            ++ ++A FT C  +Y+C+YR+++RA+  L ETPC DC VHF C  CA+CQ+Y+ELK+RG
Sbjct: 75  ALYAVLAYFTGCQWIYSCTYRAKMRAQLGLPETPCCDCLVHFCCEPCALCQQYKELKARG 134

Query: 122 FDMHIGWQENVQRRNRGIEIPPIVEG 147
           FD  +GW  N         +PP  +G
Sbjct: 135 FDPVLGWDRNATM------LPPSAQG 154

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BLAST of Lsi04G011140 vs. ExPASy Swiss-Prot
Match: Q9LQU4 (Protein PLANT CADMIUM RESISTANCE 2 OS=Arabidopsis thaliana OX=3702 GN=PCR2 PE=1 SV=1)

HSP 1 Score: 156.8 bits (395), Expect = 2.0e-37
Identity = 67/137 (48.91%), Postives = 92/137 (67.15%), Query Frame = 0


Query: 17  WSSGLCDCFSDMGSCCCTIWCPCVPFGQASEIIDEGSTSCFGNALIFWLIASFTPCICLY 76
           WS+G CDCFSD  +CC T WCPC+ FGQ +EI+D GSTSC     ++ LIA  T C C+Y
Sbjct: 16  WSTGFCDCFSDCKNCCITFWCPCITFGQVAEIVDRGSTSCGTAGALYALIAVVTGCACIY 75

Query: 77  TCSYRSRLRAKYQLQETPCNDCCVHFWCWSCAMCQEYRELKSRGFDMHIGWQENVQRRNR 136
           +C YR ++RA+Y ++   C DC  HF C  C++ Q+YRELK RG+DM +GW  NV+R+  
Sbjct: 76  SCFYRGKMRAQYNIKGDDCTDCLKHFCCELCSLTQQYRELKHRGYDMSLGWAGNVERQQN 135

Query: 137 --GIEI-PPIVEGQMNR 151
             G+ +  P+ +G M R
Sbjct: 136 QGGVAMGAPVFQGGMTR 152

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BLAST of Lsi04G011140 vs. ExPASy Swiss-Prot
Match: D9HP23 (Cell number regulator 7 OS=Zea mays OX=4577 GN=CNR7 PE=2 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 5.7e-37
Identity = 73/153 (47.71%), Postives = 97/153 (63.40%), Query Frame = 0


Query: 6   GIPVNSAN----GSPWSSGLCDCFSDMGSCCCTIWCPCVPFGQASEIIDEGSTSCFGNAL 65
           GIP++S       S WSSGLC CF D G CC T WCPCV FG+ +E++D G+TSC     
Sbjct: 25  GIPISSPGPAVAASQWSSGLCACFDDCGLCCMTCWCPCVTFGRIAEVVDRGATSCAAAGA 84

Query: 66  IFWLIASFT--PCICLYTCSYRSRLRAKYQLQETPCNDCCVHFWCWSCAMCQEYRELKSR 125
           I+ L+A FT   C  +Y+C+YRS++RA+  L +  C DCCVHF C  CA+CQ+YREL++R
Sbjct: 85  IYTLLACFTGFQCHWIYSCTYRSKMRAQLGLPDVGCCDCCVHFCCEPCALCQQYRELRAR 144

Query: 126 GFDMHIGWQENVQR---RNRGIEI---PPIVEG 147
           G D  +GW  N Q+    N G  +   PP  +G
Sbjct: 145 GLDPALGWDVNAQKAANNNAGAGMTMYPPTAQG 177

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BLAST of Lsi04G011140 vs. ExPASy TrEMBL
Match: A0A4Y5UXT8 (Lsfw2.2 protein OS=Lagenaria siceraria OX=3668 PE=2 SV=1)

HSP 1 Score: 335.5 bits (859), Expect = 1.1e-88
Identity = 150/150 (100.00%), Postives = 150/150 (100.00%), Query Frame = 0


Query: 1   MASAGGIPVNSANGSPWSSGLCDCFSDMGSCCCTIWCPCVPFGQASEIIDEGSTSCFGNA 60
           MASAGGIPVNSANGSPWSSGLCDCFSDMGSCCCTIWCPCVPFGQASEIIDEGSTSCFGNA
Sbjct: 1   MASAGGIPVNSANGSPWSSGLCDCFSDMGSCCCTIWCPCVPFGQASEIIDEGSTSCFGNA 60

Query: 61  LIFWLIASFTPCICLYTCSYRSRLRAKYQLQETPCNDCCVHFWCWSCAMCQEYRELKSRG 120
           LIFWLIASFTPCICLYTCSYRSRLRAKYQLQETPCNDCCVHFWCWSCAMCQEYRELKSRG
Sbjct: 61  LIFWLIASFTPCICLYTCSYRSRLRAKYQLQETPCNDCCVHFWCWSCAMCQEYRELKSRG 120

Query: 121 FDMHIGWQENVQRRNRGIEIPPIVEGQMNR 151
           FDMHIGWQENVQRRNRGIEIPPIVEGQMNR
Sbjct: 121 FDMHIGWQENVQRRNRGIEIPPIVEGQMNR 150

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BLAST of Lsi04G011140 vs. ExPASy TrEMBL
Match: A0A1S3BT42 (cell number regulator 2-like OS=Cucumis melo OX=3656 GN=LOC103493439 PE=4 SV=1)

HSP 1 Score: 304.3 bits (778), Expect = 2.8e-79
Identity = 135/150 (90.00%), Postives = 141/150 (94.00%), Query Frame = 0


Query: 1   MASAGGIPVNSANGSPWSSGLCDCFSDMGSCCCTIWCPCVPFGQASEIIDEGSTSCFGNA 60
           MASAGGI  NSANGSPWSSGLCDCFSD+GSCCCTIWCPCVPFGQASEIIDEGSTSCFGNA
Sbjct: 1   MASAGGIAANSANGSPWSSGLCDCFSDIGSCCCTIWCPCVPFGQASEIIDEGSTSCFGNA 60

Query: 61  LIFWLIASFTPCICLYTCSYRSRLRAKYQLQETPCNDCCVHFWCWSCAMCQEYRELKSRG 120
           LIF LIASFTPCICLYTCSYRSRLR KY LQETPCNDCCVHFWCWSCA+CQE+RELK+RG
Sbjct: 61  LIFLLIASFTPCICLYTCSYRSRLRGKYNLQETPCNDCCVHFWCWSCALCQEHRELKNRG 120

Query: 121 FDMHIGWQENVQRRNRGIEIPPIVEGQMNR 151
           F+MHIGWQENVQRRNR  +IPP VEGQM R
Sbjct: 121 FNMHIGWQENVQRRNRETQIPPTVEGQMKR 150

[Close]

BLAST of Lsi04G011140 vs. ExPASy TrEMBL
Match: A0A1S3CM72 (cell number regulator 2-like OS=Cucumis melo OX=3656 GN=LOC103502518 PE=4 SV=1)

HSP 1 Score: 288.9 bits (738), Expect = 1.2e-74
Identity = 129/150 (86.00%), Postives = 134/150 (89.33%), Query Frame = 0


Query: 1   MASAGGIPVNSANGSPWSSGLCDCFSDMGSCCCTIWCPCVPFGQASEIIDEGSTSCFGNA 60
           M S  G   NS N SPWSSGLCDCFSDMGSCCCT WCPCVPFGQASEIIDEGSTSCFGNA
Sbjct: 1   MGSDDGFLTNSDNESPWSSGLCDCFSDMGSCCCTTWCPCVPFGQASEIIDEGSTSCFGNA 60

Query: 61  LIFWLIASFTPCICLYTCSYRSRLRAKYQLQETPCNDCCVHFWCWSCAMCQEYRELKSRG 120
           LIF LIASFTPCICLYTCSYRSRLR KY L+ETPCNDCCVH WCWSCAMCQEYRELK+RG
Sbjct: 61  LIFCLIASFTPCICLYTCSYRSRLRRKYNLKETPCNDCCVHCWCWSCAMCQEYRELKNRG 120

Query: 121 FDMHIGWQENVQRRNRGIEIPPIVEGQMNR 151
           F+MHIGWQENVQR+N+GIEIPP V GQM R
Sbjct: 121 FNMHIGWQENVQRQNKGIEIPPTVPGQMKR 150

[Close]

BLAST of Lsi04G011140 vs. ExPASy TrEMBL
Match: A0A0A0KIS6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G027940 PE=4 SV=1)

HSP 1 Score: 282.0 bits (720), Expect = 1.5e-72
Identity = 125/150 (83.33%), Postives = 132/150 (88.00%), Query Frame = 0


Query: 1   MASAGGIPVNSANGSPWSSGLCDCFSDMGSCCCTIWCPCVPFGQASEIIDEGSTSCFGNA 60
           M S  G   NS N SPWSSGLCDCFSDMGSCCCT WCPCVPFGQASEIIDEGSTSCFGN 
Sbjct: 1   MGSDDGFLNNSGNESPWSSGLCDCFSDMGSCCCTAWCPCVPFGQASEIIDEGSTSCFGNG 60

Query: 61  LIFWLIASFTPCICLYTCSYRSRLRAKYQLQETPCNDCCVHFWCWSCAMCQEYRELKSRG 120
           LIF LIA+FTPCICLYTCSYRSRLR KY L+ETPCNDCCVH WCWSCAMCQEYREL++RG
Sbjct: 61  LIFCLIATFTPCICLYTCSYRSRLRKKYNLKETPCNDCCVHCWCWSCAMCQEYRELQNRG 120

Query: 121 FDMHIGWQENVQRRNRGIEIPPIVEGQMNR 151
           F+MHIGWQEN+QR N+GIEIPP V GQM R
Sbjct: 121 FNMHIGWQENMQRGNKGIEIPPTVPGQMKR 150

[Close]

BLAST of Lsi04G011140 vs. ExPASy TrEMBL
Match: A0A6J1FWN1 (cell number regulator 2-like isoform X3 OS=Cucurbita moschata OX=3662 GN=LOC111447610 PE=4 SV=1)

HSP 1 Score: 281.2 bits (718), Expect = 2.6e-72
Identity = 119/147 (80.95%), Postives = 133/147 (90.48%), Query Frame = 0


Query: 4   AGGIPVNSANGSPWSSGLCDCFSDMGSCCCTIWCPCVPFGQASEIIDEGSTSCFGNALIF 63
           +GG P+N+ NG+PWS+GLCDCF DMGSCCCT WCPCVPFGQA+EIIDEGSTSC G A IF
Sbjct: 2   SGGTPMNAPNGTPWSTGLCDCFDDMGSCCCTFWCPCVPFGQAAEIIDEGSTSCLGQASIF 61

Query: 64  WLIASFTPCICLYTCSYRSRLRAKYQLQETPCNDCCVHFWCWSCAMCQEYRELKSRGFDM 123
            +I+ FTPCICLYTC YRSRLRAKYQLQETPCNDCCVHFWC  CAMCQEYRELK+RGFDM
Sbjct: 62  TVISCFTPCICLYTCHYRSRLRAKYQLQETPCNDCCVHFWCLGCAMCQEYRELKNRGFDM 121

Query: 124 HIGWQENVQRRNRGIEIPPIVEGQMNR 151
           HIGWQ NVQ++N+G+EIPP+VEGQM R
Sbjct: 122 HIGWQGNVQKQNKGLEIPPVVEGQMKR 148

[Close]

BLAST of Lsi04G011140 vs. NCBI nr
Match: QDD67543.1 (Lsfw2.2 protein [Lagenaria siceraria])

HSP 1 Score: 335.5 bits (859), Expect = 2.4e-88
Identity = 150/150 (100.00%), Postives = 150/150 (100.00%), Query Frame = 0


Query: 1   MASAGGIPVNSANGSPWSSGLCDCFSDMGSCCCTIWCPCVPFGQASEIIDEGSTSCFGNA 60
           MASAGGIPVNSANGSPWSSGLCDCFSDMGSCCCTIWCPCVPFGQASEIIDEGSTSCFGNA
Sbjct: 1   MASAGGIPVNSANGSPWSSGLCDCFSDMGSCCCTIWCPCVPFGQASEIIDEGSTSCFGNA 60

Query: 61  LIFWLIASFTPCICLYTCSYRSRLRAKYQLQETPCNDCCVHFWCWSCAMCQEYRELKSRG 120
           LIFWLIASFTPCICLYTCSYRSRLRAKYQLQETPCNDCCVHFWCWSCAMCQEYRELKSRG
Sbjct: 61  LIFWLIASFTPCICLYTCSYRSRLRAKYQLQETPCNDCCVHFWCWSCAMCQEYRELKSRG 120

Query: 121 FDMHIGWQENVQRRNRGIEIPPIVEGQMNR 151
           FDMHIGWQENVQRRNRGIEIPPIVEGQMNR
Sbjct: 121 FDMHIGWQENVQRRNRGIEIPPIVEGQMNR 150

[Close]

BLAST of Lsi04G011140 vs. NCBI nr
Match: XP_038892870.1 (cell number regulator 2-like [Benincasa hispida])

HSP 1 Score: 305.8 bits (782), Expect = 2.0e-79
Identity = 134/150 (89.33%), Postives = 139/150 (92.67%), Query Frame = 0


Query: 1   MASAGGIPVNSANGSPWSSGLCDCFSDMGSCCCTIWCPCVPFGQASEIIDEGSTSCFGNA 60
           MAS GGIP NS NGSPWSSGLCDCFSDM SCCCT WCPCVPFGQ SEIIDEGSTSCFGNA
Sbjct: 1   MASTGGIPANSTNGSPWSSGLCDCFSDMESCCCTTWCPCVPFGQTSEIIDEGSTSCFGNA 60

Query: 61  LIFWLIASFTPCICLYTCSYRSRLRAKYQLQETPCNDCCVHFWCWSCAMCQEYRELKSRG 120
           LIF LIASFTPCICLYTCSYRSRLR KY LQETPCNDCCVH+WCWSCA+CQEYRELK RG
Sbjct: 61  LIFCLIASFTPCICLYTCSYRSRLRRKYNLQETPCNDCCVHYWCWSCAICQEYRELKHRG 120

Query: 121 FDMHIGWQENVQRRNRGIEIPPIVEGQMNR 151
           FDMHIGWQENVQRRN+GIEIPP+VEG+M R
Sbjct: 121 FDMHIGWQENVQRRNKGIEIPPVVEGEMKR 150

[Close]

BLAST of Lsi04G011140 vs. NCBI nr
Match: XP_008452392.1 (PREDICTED: cell number regulator 2-like [Cucumis melo])

HSP 1 Score: 304.3 bits (778), Expect = 5.8e-79
Identity = 135/150 (90.00%), Postives = 141/150 (94.00%), Query Frame = 0


Query: 1   MASAGGIPVNSANGSPWSSGLCDCFSDMGSCCCTIWCPCVPFGQASEIIDEGSTSCFGNA 60
           MASAGGI  NSANGSPWSSGLCDCFSD+GSCCCTIWCPCVPFGQASEIIDEGSTSCFGNA
Sbjct: 1   MASAGGIAANSANGSPWSSGLCDCFSDIGSCCCTIWCPCVPFGQASEIIDEGSTSCFGNA 60

Query: 61  LIFWLIASFTPCICLYTCSYRSRLRAKYQLQETPCNDCCVHFWCWSCAMCQEYRELKSRG 120
           LIF LIASFTPCICLYTCSYRSRLR KY LQETPCNDCCVHFWCWSCA+CQE+RELK+RG
Sbjct: 61  LIFLLIASFTPCICLYTCSYRSRLRGKYNLQETPCNDCCVHFWCWSCALCQEHRELKNRG 120

Query: 121 FDMHIGWQENVQRRNRGIEIPPIVEGQMNR 151
           F+MHIGWQENVQRRNR  +IPP VEGQM R
Sbjct: 121 FNMHIGWQENVQRRNRETQIPPTVEGQMKR 150

[Close]

BLAST of Lsi04G011140 vs. NCBI nr
Match: XP_008464696.1 (PREDICTED: cell number regulator 2-like [Cucumis melo])

HSP 1 Score: 288.9 bits (738), Expect = 2.5e-74
Identity = 129/150 (86.00%), Postives = 134/150 (89.33%), Query Frame = 0


Query: 1   MASAGGIPVNSANGSPWSSGLCDCFSDMGSCCCTIWCPCVPFGQASEIIDEGSTSCFGNA 60
           M S  G   NS N SPWSSGLCDCFSDMGSCCCT WCPCVPFGQASEIIDEGSTSCFGNA
Sbjct: 1   MGSDDGFLTNSDNESPWSSGLCDCFSDMGSCCCTTWCPCVPFGQASEIIDEGSTSCFGNA 60

Query: 61  LIFWLIASFTPCICLYTCSYRSRLRAKYQLQETPCNDCCVHFWCWSCAMCQEYRELKSRG 120
           LIF LIASFTPCICLYTCSYRSRLR KY L+ETPCNDCCVH WCWSCAMCQEYRELK+RG
Sbjct: 61  LIFCLIASFTPCICLYTCSYRSRLRRKYNLKETPCNDCCVHCWCWSCAMCQEYRELKNRG 120

Query: 121 FDMHIGWQENVQRRNRGIEIPPIVEGQMNR 151
           F+MHIGWQENVQR+N+GIEIPP V GQM R
Sbjct: 121 FNMHIGWQENVQRQNKGIEIPPTVPGQMKR 150

[Close]

BLAST of Lsi04G011140 vs. NCBI nr
Match: XP_004142270.1 (cell number regulator 2 [Cucumis sativus] >KGN49620.1 hypothetical protein Csa_018338 [Cucumis sativus])

HSP 1 Score: 282.0 bits (720), Expect = 3.1e-72
Identity = 125/150 (83.33%), Postives = 132/150 (88.00%), Query Frame = 0


Query: 1   MASAGGIPVNSANGSPWSSGLCDCFSDMGSCCCTIWCPCVPFGQASEIIDEGSTSCFGNA 60
           M S  G   NS N SPWSSGLCDCFSDMGSCCCT WCPCVPFGQASEIIDEGSTSCFGN 
Sbjct: 1   MGSDDGFLNNSGNESPWSSGLCDCFSDMGSCCCTAWCPCVPFGQASEIIDEGSTSCFGNG 60

Query: 61  LIFWLIASFTPCICLYTCSYRSRLRAKYQLQETPCNDCCVHFWCWSCAMCQEYRELKSRG 120
           LIF LIA+FTPCICLYTCSYRSRLR KY L+ETPCNDCCVH WCWSCAMCQEYREL++RG
Sbjct: 61  LIFCLIATFTPCICLYTCSYRSRLRKKYNLKETPCNDCCVHCWCWSCAMCQEYRELQNRG 120

Query: 121 FDMHIGWQENVQRRNRGIEIPPIVEGQMNR 151
           F+MHIGWQEN+QR N+GIEIPP V GQM R
Sbjct: 121 FNMHIGWQENMQRGNKGIEIPPTVPGQMKR 150

[Close]

BLAST of Lsi04G011140 vs. TAIR 10
Match: AT1G14870.1 (PLANT CADMIUM RESISTANCE 2 )

HSP 1 Score: 156.8 bits (395), Expect = 1.4e-38
Identity = 67/137 (48.91%), Postives = 92/137 (67.15%), Query Frame = 0


Query: 17  WSSGLCDCFSDMGSCCCTIWCPCVPFGQASEIIDEGSTSCFGNALIFWLIASFTPCICLY 76
           WS+G CDCFSD  +CC T WCPC+ FGQ +EI+D GSTSC     ++ LIA  T C C+Y
Sbjct: 16  WSTGFCDCFSDCKNCCITFWCPCITFGQVAEIVDRGSTSCGTAGALYALIAVVTGCACIY 75

Query: 77  TCSYRSRLRAKYQLQETPCNDCCVHFWCWSCAMCQEYRELKSRGFDMHIGWQENVQRRNR 136
           +C YR ++RA+Y ++   C DC  HF C  C++ Q+YRELK RG+DM +GW  NV+R+  
Sbjct: 76  SCFYRGKMRAQYNIKGDDCTDCLKHFCCELCSLTQQYRELKHRGYDMSLGWAGNVERQQN 135

Query: 137 --GIEI-PPIVEGQMNR 151
             G+ +  P+ +G M R
Sbjct: 136 QGGVAMGAPVFQGGMTR 152

[Close]

BLAST of Lsi04G011140 vs. TAIR 10
Match: AT5G35525.1 (PLAC8 family protein )

HSP 1 Score: 149.4 bits (376), Expect = 2.2e-36
Identity = 66/137 (48.18%), Postives = 92/137 (67.15%), Query Frame = 0


Query: 17  WSSGLCDCFSDMGSCCCTIWCPCVPFGQASEIIDEGSTSCFGNALIFWLIASFTPCICLY 76
           WS+G CDCFSD  +CC T  CPC+ FGQ ++I+D G+TSC     ++ L+A+ T C CLY
Sbjct: 16  WSTGFCDCFSDCQNCCITWLCPCITFGQVADIVDRGNTSCGTAGALYVLLAAITGCGCLY 75

Query: 77  TCSYRSRLRAKYQLQETPCNDCCVHFWCWSCAMCQEYRELKSRGFDMHIGWQENVQRRNR 136
           +C YR ++RA+Y ++   C DC  HF C  CA+ QEYRELK RGFDM +GW  NV+++  
Sbjct: 76  SCIYRGKIRAQYNIRGDGCTDCLKHFCCELCALTQEYRELKHRGFDMSLGWAGNVEKQQN 135

Query: 137 --GIEI-PPIVEGQMNR 151
             G+ +  P  +G M+R
Sbjct: 136 QGGVAMGAPAFQGGMSR 152

[Close]

BLAST of Lsi04G011140 vs. TAIR 10
Match: AT1G68610.1 (PLANT CADMIUM RESISTANCE 11 )

HSP 1 Score: 141.4 bits (355), Expect = 6.1e-34
Identity = 62/123 (50.41%), Postives = 86/123 (69.92%), Query Frame = 0


Query: 17  WSSGLCDCFSDMGSCCCTIWCPCVPFGQASEIIDEGSTSCFGNALIFWLIASFTPC--IC 76
           WS+ LC+C+ D+ SCC T WCPCV FG+ +E++D GSTSC  +  ++ +I   T      
Sbjct: 19  WSTDLCECWMDINSCCLTCWCPCVAFGRIAEVVDRGSTSCGVSGAMYMIIFMLTGYGGSS 78

Query: 77  LYTCSYRSRLRAKYQLQETPCNDCCVHFWCWSCAMCQEYRELK-SRGFDMHIGWQENVQR 136
           LY+C YR++LRA+Y L+E PC DCCVHF C  CA+CQEYR+L+ +R  D+ IGW  N++R
Sbjct: 79  LYSCFYRTKLRAQYNLKERPCCDCCVHFCCEPCALCQEYRQLQHNRDLDLVIGWHGNMER 138

[Close]

BLAST of Lsi04G011140 vs. TAIR 10
Match: AT1G14880.1 (PLANT CADMIUM RESISTANCE 1 )

HSP 1 Score: 139.4 bits (350), Expect = 2.3e-33
Identity = 62/137 (45.26%), Postives = 85/137 (62.04%), Query Frame = 0


Query: 17  WSSGLCDCFSDMGSCCCTIWCPCVPFGQASEIIDEGSTSCFGNALIFWLIASFTPCICLY 76
           WS+G CDCFSD  +CC T+ CPC+ FGQ +EI+D GS SC     ++ LI   T C  +Y
Sbjct: 15  WSTGFCDCFSDCRNCCITLCCPCITFGQVAEIVDRGSKSCCAAGALYMLIDLITSCGRMY 74

Query: 77  TCSYRSRLRAKYQLQETPCNDCCVHFWCWSCAMCQEYRELKSRGFDMHIGWQENVQRRNR 136
            C Y  ++RA+Y ++   C DC  HF C  CA+ Q+YRELK RGFDM +GW  N +++  
Sbjct: 75  ACFYSGKMRAQYNIKGDGCTDCLKHFCCNLCALTQQYRELKHRGFDMSLGWAGNAEKQQN 134

Query: 137 --GIEI-PPIVEGQMNR 151
             G+ +  P  +G M R
Sbjct: 135 QGGVAMGAPAFQGGMTR 151

[Close]

BLAST of Lsi04G011140 vs. TAIR 10
Match: AT3G18470.1 (PLAC8 family protein )

HSP 1 Score: 129.8 bits (325), Expect = 1.8e-30
Identity = 55/117 (47.01%), Postives = 78/117 (66.67%), Query Frame = 0


Query: 17  WSSGLCDCFSDMGSCCCTIWCPCVPFGQASEIIDEGSTSCFGNALIFWLIASFTPCICLY 76
           W+SGL  C  D  + C T +CPCV FG+ ++I DEG T C    + + LI       CL+
Sbjct: 5   WTSGLFSCMEDSETACLTCFCPCVTFGRIADISDEGRTGCGRCGVFYGLICCVVGLPCLF 64

Query: 77  TCSYRSRLRAKYQLQETPCNDCCVHFWCWSCAMCQEYRELKSRGFDMHIGWQENVQR 134
           +C+YR+++R+K+ L E+P +DC  HF+C  CA+CQE+RELK+RG D  IGW  N+QR
Sbjct: 65  SCTYRTKIRSKFGLPESPTSDCVTHFFCECCALCQEHRELKTRGLDPSIGWSGNMQR 121

The following BLAST results are available for this feature:

BLAST of Lsi04G011140 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
B6TYV8	1.5e-40	53.33	Cell number regulator 2 OS=Zea mays OX=4577 GN=CNR2 PE=2 SV=1	[more]
D9HP25	8.9e-38	49.67	Cell number regulator 9 OS=Zea mays OX=4577 GN=CNR9 PE=2 SV=1	[more]
D9HP26	2.0e-37	48.63	Cell number regulator 10 OS=Zea mays OX=4577 GN=CNR10 PE=2 SV=1	[more]
Q9LQU4	2.0e-37	48.91	Protein PLANT CADMIUM RESISTANCE 2 OS=Arabidopsis thaliana OX=3702 GN=PCR2 PE=1 ...	[more]
D9HP23	5.7e-37	47.71	Cell number regulator 7 OS=Zea mays OX=4577 GN=CNR7 PE=2 SV=1	[more]

BLAST of Lsi04G011140 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A4Y5UXT8	1.1e-88	100.00	Lsfw2.2 protein OS=Lagenaria siceraria OX=3668 PE=2 SV=1	[more]
A0A1S3BT42	2.8e-79	90.00	cell number regulator 2-like OS=Cucumis melo OX=3656 GN=LOC103493439 PE=4 SV=1	[more]
A0A1S3CM72	1.2e-74	86.00	cell number regulator 2-like OS=Cucumis melo OX=3656 GN=LOC103502518 PE=4 SV=1	[more]
A0A0A0KIS6	1.5e-72	83.33	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G027940 PE=4 SV=1	[more]
A0A6J1FWN1	2.6e-72	80.95	cell number regulator 2-like isoform X3 OS=Cucurbita moschata OX=3662 GN=LOC1114...	[more]

BLAST of Lsi04G011140 vs. NCBI nr


Match Name	E-value	Identity	Description
QDD67543.1	2.4e-88	100.00	Lsfw2.2 protein [Lagenaria siceraria]	[more]
XP_038892870.1	2.0e-79	89.33	cell number regulator 2-like [Benincasa hispida]	[more]
XP_008452392.1	5.8e-79	90.00	PREDICTED: cell number regulator 2-like [Cucumis melo]	[more]
XP_008464696.1	2.5e-74	86.00	PREDICTED: cell number regulator 2-like [Cucumis melo]	[more]
XP_004142270.1	3.1e-72	83.33	cell number regulator 2 [Cucumis sativus] >KGN49620.1 hypothetical protein Csa_0...	[more]

BLAST of Lsi04G011140 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G14870.1	1.4e-38	48.91	PLANT CADMIUM RESISTANCE 2	[more]
AT5G35525.1	2.2e-36	48.18	PLAC8 family protein	[more]
AT1G68610.1	6.1e-34	50.41	PLANT CADMIUM RESISTANCE 11	[more]
AT1G14880.1	2.3e-33	45.26	PLANT CADMIUM RESISTANCE 1	[more]
AT3G18470.1	1.8e-30	47.01	PLAC8 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006461	PLAC8 motif-containing protein	PFAM	PF04749	PLAC8	coord: 17..115 e-value: 5.1E-27 score: 94.6
IPR006461	PLAC8 motif-containing protein	TIGRFAM	TIGR01571	TIGR01571	coord: 16..117 e-value: 1.4E-32 score: 110.6
IPR006461	PLAC8 motif-containing protein	PANTHER	PTHR15907	DUF614 FAMILY PROTEIN-RELATED	coord: 13..149
None	No IPR available	PANTHER	PTHR15907:SF182	PROTEIN PLANT CADMIUM RESISTANCE 1-RELATED	coord: 13..149

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi04G011140.1	Lsi04G011140.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane