Lsi04G009860 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi04G009860
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
DescriptionOmega-3 fatty acid desaturase
Locationchr04: 10682189 .. 10683016 (-)
RNA-Seq ExpressionLsi04G009860
SyntenyLsi04G009860
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATCAAACAGGAATGGAGTTACCTAAGAGGAGGATTAACCACTCTCGATCGCGATTATGGATGGATCAACAACATCCATCACGACATTGGAACTCATGTCATTCACCATCTCTTCCCTCAGATCCCACACTATCACTTAATAGAAGCAGTGAGTATCCTTCTCAGCCCTGCATCTGAAATTCAAACTTATCTTTTTTCTATATATTCGAAATTCTCATCGATTACAACTGCAATCTTCTCGTGTTAGACTGAGGCAACAAAGCCGGTGCTCGGGAAGTATTATCGGGAACCAGAAAAATCTTGGCCTCTTCCATTTCACTTATTGGGAGTTCTTGTAAAAAGCATGAGAAAGGATCACTTTGTGAGCGATTCCGGGGACATCGTATATTATCAAACCGACCCCGACCTGTCTTGATAAAAGCAACAGGAGTGAGATCTGCTCATTATCTTTCAACTATTATACATCGAAATTCTTTGCGAATAGCTTGTGAGCCATTCGAGTTTAAAATATGATCAGTTGCCAAGAAAACTTAAAGAGAGAAGAAGTTGTTGTTCATGAATCATGATGATAGTATTCATGCTTCAGGGTATTAGAGTTACATATTATTTATAGCCACATGAAAGAAAAATTTGGCATTGTTTTTGCTTCAAGTATGTTTAATAAACTATTAGTGAACCACAATGCTATCAATTCATATGGGAGGAGTCAATTTATTTTGAATTGTTCTAAAATGTGGGTTCCCCCCTTAACTTCCAGTCCAATGGAGAGTTCTGTGATGTGGTTTTAAAATACAAAGTAAATGCTACCATTTCATGAGCTAAAAAA

mRNA sequence

ATGATCAAACAGGAATGGAGTTACCTAAGAGGAGGATTAACCACTCTCGATCGCGATTATGGATGGATCAACAACATCCATCACGACATTGGAACTCATGTCATTCACCATCTCTTCCCTCAGATCCCACACTATCACTTAATAGAAGCAACTGAGGCAACAAAGCCGGTGCTCGGGAAGTATTATCGGGAACCAGAAAAATCTTGGCCTCTTCCATTTCACTTATTGGGAGTTCTTGTAAAAAGCATGAGAAAGGATCACTTTGTGAGCGATTCCGGGGACATCGTATATTATCAAACCGACCCCGACCTGTCTTGATAAAAGCAACAGGAGTGAGATCTGCTCATTATCTTTCAACTATTATACATCGAAATTCTTTGCGAATAGCTTGTGAGCCATTCGAGTTTAAAATATGATCAGTTGCCAAGAAAACTTAAAGAGAGAAGAAGTTGTTGTTCATGAATCATGATGATAGTATTCATGCTTCAGGGTATTAGAGTTACATATTATTTATAGCCACATGAAAGAAAAATTTGGCATTGTTTTTGCTTCAAGTATGTTTAATAAACTATTAGTGAACCACAATGCTATCAATTCATATGGGAGGAGTCAATTTATTTTGAATTGTTCTAAAATGTGGGTTCCCCCCTTAACTTCCAGTCCAATGGAGAGTTCTGTGATGTGGTTTTAAAATACAAAGTAAATGCTACCATTTCATGAGCTAAAAAA

Coding sequence (CDS)

ATGATCAAACAGGAATGGAGTTACCTAAGAGGAGGATTAACCACTCTCGATCGCGATTATGGATGGATCAACAACATCCATCACGACATTGGAACTCATGTCATTCACCATCTCTTCCCTCAGATCCCACACTATCACTTAATAGAAGCAACTGAGGCAACAAAGCCGGTGCTCGGGAAGTATTATCGGGAACCAGAAAAATCTTGGCCTCTTCCATTTCACTTATTGGGAGTTCTTGTAAAAAGCATGAGAAAGGATCACTTTGTGAGCGATTCCGGGGACATCGTATATTATCAAACCGACCCCGACCTGTCTTGA

Protein sequence

MIKQEWSYLRGGLTTLDRDYGWINNIHHDIGTHVIHHLFPQIPHYHLIEATEATKPVLGKYYREPEKSWPLPFHLLGVLVKSMRKDHFVSDSGDIVYYQTDPDLS
Homology
[Close]
BLAST of Lsi04G009860 vs. ExPASy Swiss-Prot
Match: P48620 (Omega-3 fatty acid desaturase, chloroplastic OS=Sesamum indicum OX=4182 GN=FAD7 PE=2 SV=1)

HSP 1 Score: 199.1 bits (505), Expect = 2.4e-50
Identity = 87/102 (85.29%), Postives = 96/102 (94.12%), Query Frame = 0 

Query: 4   QEWSYLRGGLTTLDRDYGWINNIHHDIGTHVIHHLFPQIPHYHLIEATEATKPVLGKYYR 63
           +EWSYLRGGLTTLDRDYGWINNIHHDIGTHVIHHLFPQIPHYHLIEATEA KPVLGKYYR
Sbjct: 341 KEWSYLRGGLTTLDRDYGWINNIHHDIGTHVIHHLFPQIPHYHLIEATEAAKPVLGKYYR 400

Query: 64  EPEKSWPLPFHLLGVLVKSMRKDHFVSDSGDIVYYQTDPDLS 106
           EP+KS PLPFHLLG L +S+++DH+VSD GD+VYYQTDP L+
Sbjct: 401 EPKKSAPLPFHLLGDLTRSLKRDHYVSDVGDVVYYQTDPQLT 442

[Close]
BLAST of Lsi04G009860 vs. ExPASy Swiss-Prot
Match: Q56VS4 (sn-2 acyl-lipid omega-3 desaturase (ferredoxin), chloroplastic OS=Helianthus annuus OX=4232 GN=FAD7 PE=1 SV=1)

HSP 1 Score: 198.4 bits (503), Expect = 4.1e-50
Identity = 86/102 (84.31%), Postives = 97/102 (95.10%), Query Frame = 0 

Query: 4   QEWSYLRGGLTTLDRDYGWINNIHHDIGTHVIHHLFPQIPHYHLIEATEATKPVLGKYYR 63
           +EWSYLRGGLTT+DRDYGWINNIHHDIGTHVIHHLFPQIPHYHLIEATEA KPVLGKYYR
Sbjct: 339 KEWSYLRGGLTTIDRDYGWINNIHHDIGTHVIHHLFPQIPHYHLIEATEAAKPVLGKYYR 398

Query: 64  EPEKSWPLPFHLLGVLVKSMRKDHFVSDSGDIVYYQTDPDLS 106
           EP+KS P+PFHLLG LV+S++KDH+VSD+GD++YYQTD  LS
Sbjct: 399 EPKKSSPIPFHLLGELVRSLKKDHYVSDTGDVLYYQTDDKLS 440

[Close]
BLAST of Lsi04G009860 vs. ExPASy Swiss-Prot
Match: P48622 (Temperature-sensitive sn-2 acyl-lipid omega-3 desaturase (ferredoxin), chloroplastic OS=Arabidopsis thaliana OX=3702 GN=FAD8 PE=1 SV=1)

HSP 1 Score: 197.2 bits (500), Expect = 9.2e-50
Identity = 85/102 (83.33%), Postives = 95/102 (93.14%), Query Frame = 0 

Query: 4   QEWSYLRGGLTTLDRDYGWINNIHHDIGTHVIHHLFPQIPHYHLIEATEATKPVLGKYYR 63
           +EWSYLRGGLTTLDRDYGWINNIHHDIGTHVIHHLFPQIPHYHL+EATEA KPVLGKYYR
Sbjct: 330 KEWSYLRGGLTTLDRDYGWINNIHHDIGTHVIHHLFPQIPHYHLVEATEAAKPVLGKYYR 389

Query: 64  EPEKSWPLPFHLLGVLVKSMRKDHFVSDSGDIVYYQTDPDLS 106
           EP+ S PLP HLLG L+KSM++DHFVSD+GD+VYY+ DP L+
Sbjct: 390 EPKNSGPLPLHLLGSLIKSMKQDHFVSDTGDVVYYEADPKLN 431

[Close]
BLAST of Lsi04G009860 vs. ExPASy Swiss-Prot
Match: P48619 (Omega-3 fatty acid desaturase, chloroplastic OS=Ricinus communis OX=3988 GN=FAD7A-1 PE=2 SV=1)

HSP 1 Score: 195.7 bits (496), Expect = 2.7e-49
Identity = 85/100 (85.00%), Postives = 94/100 (94.00%), Query Frame = 0 

Query: 6   WSYLRGGLTTLDRDYGWINNIHHDIGTHVIHHLFPQIPHYHLIEATEATKPVLGKYYREP 65
           WSYLRGGLTTLDRDYGWINNIHHDIGTHVIHHLFPQIPHYHL+EATEA KPV+GKYYREP
Sbjct: 353 WSYLRGGLTTLDRDYGWINNIHHDIGTHVIHHLFPQIPHYHLVEATEAAKPVMGKYYREP 412

Query: 66  EKSWPLPFHLLGVLVKSMRKDHFVSDSGDIVYYQTDPDLS 106
           +KS PLP HLLG LV+SM++DH+VSD+GD+VYYQ DP LS
Sbjct: 413 KKSGPLPLHLLGSLVRSMKEDHYVSDTGDVVYYQKDPKLS 452

[Close]
BLAST of Lsi04G009860 vs. ExPASy Swiss-Prot
Match: P48618 (Omega-3 fatty acid desaturase, chloroplastic (Fragment) OS=Brassica napus OX=3708 GN=FAD7 PE=2 SV=1)

HSP 1 Score: 193.7 bits (491), Expect = 1.0e-48
Identity = 84/101 (83.17%), Postives = 94/101 (93.07%), Query Frame = 0 

Query: 4   QEWSYLRGGLTTLDRDYGWINNIHHDIGTHVIHHLFPQIPHYHLIEATEATKPVLGKYYR 63
           +EWSYLRGGLTTLDRDYG INNIHHDIGTHVIHHLFPQIPHYHL+EATEA KPVLGKYYR
Sbjct: 295 KEWSYLRGGLTTLDRDYGLINNIHHDIGTHVIHHLFPQIPHYHLVEATEAAKPVLGKYYR 354

Query: 64  EPEKSWPLPFHLLGVLVKSMRKDHFVSDSGDIVYYQTDPDL 105
           EP+KS PLP HLLG+L KS+++DHFVSD GD+VYY+ DP+L
Sbjct: 355 EPDKSGPLPLHLLGILAKSIKEDHFVSDEGDVVYYEADPNL 395

[Close]
BLAST of Lsi04G009860 vs. ExPASy TrEMBL
Match: A0A6J1K2M7 (omega-3 fatty acid desaturase, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111491157 PE=3 SV=1)

HSP 1 Score: 222.2 bits (565), Expect = 9.9e-55
Identity = 99/102 (97.06%), Postives = 102/102 (100.00%), Query Frame = 0 

Query: 4   QEWSYLRGGLTTLDRDYGWINNIHHDIGTHVIHHLFPQIPHYHLIEATEATKPVLGKYYR 63
           +EWSYLRGGLTTLDRDYGWINNIHHDIGTHVIHHLFPQIPHYHLIEATEATKPVLGKYYR
Sbjct: 341 EEWSYLRGGLTTLDRDYGWINNIHHDIGTHVIHHLFPQIPHYHLIEATEATKPVLGKYYR 400

Query: 64  EPEKSWPLPFHLLGVLVKSMRKDHFVSDSGDIVYYQTDPDLS 106
           +PEKSWPLPFHLLGVLVKSM+KDHFVSDSGDIVYYQTDPDLS
Sbjct: 401 QPEKSWPLPFHLLGVLVKSMKKDHFVSDSGDIVYYQTDPDLS 442

[Close]
BLAST of Lsi04G009860 vs. ExPASy TrEMBL
Match: A0A5A7UH66 (Omega-3 fatty acid desaturase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold186G001460 PE=3 SV=1)

HSP 1 Score: 221.9 bits (564), Expect = 1.3e-54
Identity = 99/102 (97.06%), Postives = 101/102 (99.02%), Query Frame = 0 

Query: 4   QEWSYLRGGLTTLDRDYGWINNIHHDIGTHVIHHLFPQIPHYHLIEATEATKPVLGKYYR 63
           +EWSYLRGGLTTLDRDYGWINNIHHDIGTHVIHHLFPQIPHYHLIEATEATKPV GKYYR
Sbjct: 344 EEWSYLRGGLTTLDRDYGWINNIHHDIGTHVIHHLFPQIPHYHLIEATEATKPVFGKYYR 403

Query: 64  EPEKSWPLPFHLLGVLVKSMRKDHFVSDSGDIVYYQTDPDLS 106
           EPEKSWPLPFHLLGVLVKS+RKDHFVSDSGDIVYYQTDPDLS
Sbjct: 404 EPEKSWPLPFHLLGVLVKSLRKDHFVSDSGDIVYYQTDPDLS 445

[Close]
BLAST of Lsi04G009860 vs. ExPASy TrEMBL
Match: A0A1S3CNS0 (omega-3 fatty acid desaturase, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103502871 PE=3 SV=1)

HSP 1 Score: 221.9 bits (564), Expect = 1.3e-54
Identity = 99/102 (97.06%), Postives = 101/102 (99.02%), Query Frame = 0 

Query: 4   QEWSYLRGGLTTLDRDYGWINNIHHDIGTHVIHHLFPQIPHYHLIEATEATKPVLGKYYR 63
           +EWSYLRGGLTTLDRDYGWINNIHHDIGTHVIHHLFPQIPHYHLIEATEATKPV GKYYR
Sbjct: 344 EEWSYLRGGLTTLDRDYGWINNIHHDIGTHVIHHLFPQIPHYHLIEATEATKPVFGKYYR 403

Query: 64  EPEKSWPLPFHLLGVLVKSMRKDHFVSDSGDIVYYQTDPDLS 106
           EPEKSWPLPFHLLGVLVKS+RKDHFVSDSGDIVYYQTDPDLS
Sbjct: 404 EPEKSWPLPFHLLGVLVKSLRKDHFVSDSGDIVYYQTDPDLS 445

[Close]
BLAST of Lsi04G009860 vs. ExPASy TrEMBL
Match: A0A6J1FSG4 (omega-3 fatty acid desaturase, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111447744 PE=3 SV=1)

HSP 1 Score: 220.3 bits (560), Expect = 3.8e-54
Identity = 98/102 (96.08%), Postives = 102/102 (100.00%), Query Frame = 0 

Query: 4   QEWSYLRGGLTTLDRDYGWINNIHHDIGTHVIHHLFPQIPHYHLIEATEATKPVLGKYYR 63
           +EWSYLRGGLTTLDRDYGWINNIHHDIGTHVIHHLFPQIPHYHLIEATEATKPVLGKYYR
Sbjct: 341 EEWSYLRGGLTTLDRDYGWINNIHHDIGTHVIHHLFPQIPHYHLIEATEATKPVLGKYYR 400

Query: 64  EPEKSWPLPFHLLGVLVKSMRKDHFVSDSGDIVYYQTDPDLS 106
           +PEKSWPLPFHLLGVLVKSM+KDHFVS+SGDIVYYQTDPDLS
Sbjct: 401 QPEKSWPLPFHLLGVLVKSMKKDHFVSNSGDIVYYQTDPDLS 442

[Close]
BLAST of Lsi04G009860 vs. ExPASy TrEMBL
Match: B3VA19 (Omega-3 fatty acid desaturase OS=Cucumis sativus OX=3659 GN=fad7 PE=2 SV=1)

HSP 1 Score: 219.9 bits (559), Expect = 4.9e-54
Identity = 96/102 (94.12%), Postives = 101/102 (99.02%), Query Frame = 0 

Query: 4   QEWSYLRGGLTTLDRDYGWINNIHHDIGTHVIHHLFPQIPHYHLIEATEATKPVLGKYYR 63
           +EWSYLRGGLTTLDRDYGWINNIHHDIGTHV+HHLFPQIPHYHLIEATEATKP+ GKYYR
Sbjct: 344 EEWSYLRGGLTTLDRDYGWINNIHHDIGTHVVHHLFPQIPHYHLIEATEATKPIFGKYYR 403

Query: 64  EPEKSWPLPFHLLGVLVKSMRKDHFVSDSGDIVYYQTDPDLS 106
           EPEKSWPLPFHLLGVLV+S+RKDHFVSDSGDIVYYQTDPDLS
Sbjct: 404 EPEKSWPLPFHLLGVLVRSLRKDHFVSDSGDIVYYQTDPDLS 445

[Close]
BLAST of Lsi04G009860 vs. NCBI nr
Match: XP_038892287.1 (omega-3 fatty acid desaturase, chloroplastic [Benincasa hispida])

HSP 1 Score: 223.4 bits (568), Expect = 9.2e-55
Identity = 100/102 (98.04%), Postives = 102/102 (100.00%), Query Frame = 0 

Query: 4   QEWSYLRGGLTTLDRDYGWINNIHHDIGTHVIHHLFPQIPHYHLIEATEATKPVLGKYYR 63
           +EWSYLRGGLTTLDRDYGWINNIHHDIGTHVIHHLFPQIPHYHLIEATEATKPVLGKYYR
Sbjct: 344 EEWSYLRGGLTTLDRDYGWINNIHHDIGTHVIHHLFPQIPHYHLIEATEATKPVLGKYYR 403

Query: 64  EPEKSWPLPFHLLGVLVKSMRKDHFVSDSGDIVYYQTDPDLS 106
           EPEKSWPLPFHLLGVLVKS+RKDHFVSDSGDIVYYQTDPDLS
Sbjct: 404 EPEKSWPLPFHLLGVLVKSLRKDHFVSDSGDIVYYQTDPDLS 445

[Close]
BLAST of Lsi04G009860 vs. NCBI nr
Match: XP_023547843.1 (omega-3 fatty acid desaturase, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 222.2 bits (565), Expect = 2.0e-54
Identity = 99/102 (97.06%), Postives = 102/102 (100.00%), Query Frame = 0 

Query: 4   QEWSYLRGGLTTLDRDYGWINNIHHDIGTHVIHHLFPQIPHYHLIEATEATKPVLGKYYR 63
           +EWSYLRGGLTTLDRDYGWINNIHHDIGTHVIHHLFPQIPHYHLIEATEATKPVLGKYYR
Sbjct: 341 EEWSYLRGGLTTLDRDYGWINNIHHDIGTHVIHHLFPQIPHYHLIEATEATKPVLGKYYR 400

Query: 64  EPEKSWPLPFHLLGVLVKSMRKDHFVSDSGDIVYYQTDPDLS 106
           +PEKSWPLPFHLLGVLVKSM+KDHFVSDSGDIVYYQTDPDLS
Sbjct: 401 QPEKSWPLPFHLLGVLVKSMKKDHFVSDSGDIVYYQTDPDLS 442

[Close]
BLAST of Lsi04G009860 vs. NCBI nr
Match: KAG7030666.1 (Omega-3 fatty acid desaturase, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 222.2 bits (565), Expect = 2.0e-54
Identity = 99/102 (97.06%), Postives = 102/102 (100.00%), Query Frame = 0 

Query: 4   QEWSYLRGGLTTLDRDYGWINNIHHDIGTHVIHHLFPQIPHYHLIEATEATKPVLGKYYR 63
           +EWSYLRGGLTTLDRDYGWINNIHHDIGTHVIHHLFPQIPHYHLIEATEATKPVLGKYYR
Sbjct: 341 EEWSYLRGGLTTLDRDYGWINNIHHDIGTHVIHHLFPQIPHYHLIEATEATKPVLGKYYR 400

Query: 64  EPEKSWPLPFHLLGVLVKSMRKDHFVSDSGDIVYYQTDPDLS 106
           +PEKSWPLPFHLLGVLVKSM+KDHFVSDSGDIVYYQTDPDLS
Sbjct: 401 QPEKSWPLPFHLLGVLVKSMKKDHFVSDSGDIVYYQTDPDLS 442

[Close]
BLAST of Lsi04G009860 vs. NCBI nr
Match: XP_022995701.1 (omega-3 fatty acid desaturase, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 222.2 bits (565), Expect = 2.0e-54
Identity = 99/102 (97.06%), Postives = 102/102 (100.00%), Query Frame = 0 

Query: 4   QEWSYLRGGLTTLDRDYGWINNIHHDIGTHVIHHLFPQIPHYHLIEATEATKPVLGKYYR 63
           +EWSYLRGGLTTLDRDYGWINNIHHDIGTHVIHHLFPQIPHYHLIEATEATKPVLGKYYR
Sbjct: 341 EEWSYLRGGLTTLDRDYGWINNIHHDIGTHVIHHLFPQIPHYHLIEATEATKPVLGKYYR 400

Query: 64  EPEKSWPLPFHLLGVLVKSMRKDHFVSDSGDIVYYQTDPDLS 106
           +PEKSWPLPFHLLGVLVKSM+KDHFVSDSGDIVYYQTDPDLS
Sbjct: 401 QPEKSWPLPFHLLGVLVKSMKKDHFVSDSGDIVYYQTDPDLS 442

[Close]
BLAST of Lsi04G009860 vs. NCBI nr
Match: KAG6599992.1 (Omega-3 fatty acid desaturase, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 222.2 bits (565), Expect = 2.0e-54
Identity = 99/102 (97.06%), Postives = 102/102 (100.00%), Query Frame = 0 

Query: 4   QEWSYLRGGLTTLDRDYGWINNIHHDIGTHVIHHLFPQIPHYHLIEATEATKPVLGKYYR 63
           +EWSYLRGGLTTLDRDYGWINNIHHDIGTHVIHHLFPQIPHYHLIEATEATKPVLGKYYR
Sbjct: 341 EEWSYLRGGLTTLDRDYGWINNIHHDIGTHVIHHLFPQIPHYHLIEATEATKPVLGKYYR 400

Query: 64  EPEKSWPLPFHLLGVLVKSMRKDHFVSDSGDIVYYQTDPDLS 106
           +PEKSWPLPFHLLGVLVKSM+KDHFVSDSGDIVYYQTDPDLS
Sbjct: 401 QPEKSWPLPFHLLGVLVKSMKKDHFVSDSGDIVYYQTDPDLS 442

[Close]
BLAST of Lsi04G009860 vs. TAIR 10
Match: AT5G05580.1 (fatty acid desaturase 8 )

HSP 1 Score: 197.2 bits (500), Expect = 6.6e-51
Identity = 85/102 (83.33%), Postives = 95/102 (93.14%), Query Frame = 0 

Query: 4   QEWSYLRGGLTTLDRDYGWINNIHHDIGTHVIHHLFPQIPHYHLIEATEATKPVLGKYYR 63
           +EWSYLRGGLTTLDRDYGWINNIHHDIGTHVIHHLFPQIPHYHL+EATEA KPVLGKYYR
Sbjct: 330 KEWSYLRGGLTTLDRDYGWINNIHHDIGTHVIHHLFPQIPHYHLVEATEAAKPVLGKYYR 389

Query: 64  EPEKSWPLPFHLLGVLVKSMRKDHFVSDSGDIVYYQTDPDLS 106
           EP+ S PLP HLLG L+KSM++DHFVSD+GD+VYY+ DP L+
Sbjct: 390 EPKNSGPLPLHLLGSLIKSMKQDHFVSDTGDVVYYEADPKLN 431

[Close]
BLAST of Lsi04G009860 vs. TAIR 10
Match: AT3G11170.1 (fatty acid desaturase 7 )

HSP 1 Score: 187.6 bits (475), Expect = 5.2e-48
Identity = 81/101 (80.20%), Postives = 93/101 (92.08%), Query Frame = 0 

Query: 4   QEWSYLRGGLTTLDRDYGWINNIHHDIGTHVIHHLFPQIPHYHLIEATEATKPVLGKYYR 63
           +EWSYLRGGLTTLDRDYG INNIHHDIGTHVIHHLFPQIPHYHL+EATEA KPVLGKYYR
Sbjct: 337 KEWSYLRGGLTTLDRDYGLINNIHHDIGTHVIHHLFPQIPHYHLVEATEAAKPVLGKYYR 396

Query: 64  EPEKSWPLPFHLLGVLVKSMRKDHFVSDSGDIVYYQTDPDL 105
           EP+KS PLP HLL +L KS+++DH+VSD G++VYY+ DP+L
Sbjct: 397 EPDKSGPLPLHLLEILAKSIKEDHYVSDEGEVVYYKADPNL 437

[Close]
BLAST of Lsi04G009860 vs. TAIR 10
Match: AT2G29980.1 (fatty acid desaturase 3 )

HSP 1 Score: 173.7 bits (439), Expect = 7.8e-44
Identity = 75/101 (74.26%), Postives = 90/101 (89.11%), Query Frame = 0 

Query: 4   QEWSYLRGGLTTLDRDYGWINNIHHDIGTHVIHHLFPQIPHYHLIEATEATKPVLGKYYR 63
           +EWSYLRGGLTT+DRDYG  NNIHHDIGTHVIHHLFPQIPHYHL++AT+A K VLG+YYR
Sbjct: 275 KEWSYLRGGLTTIDRDYGIFNNIHHDIGTHVIHHLFPQIPHYHLVDATKAAKHVLGRYYR 334

Query: 64  EPEKSWPLPFHLLGVLVKSMRKDHFVSDSGDIVYYQTDPDL 105
           EP+ S  +P HL+  LV S++KDH+VSD+GDIV+Y+TDPDL
Sbjct: 335 EPKTSGAIPIHLVESLVASIKKDHYVSDTGDIVFYETDPDL 375

[Close]
BLAST of Lsi04G009860 vs. TAIR 10
Match: AT5G05580.2 (fatty acid desaturase 8 )

HSP 1 Score: 107.8 bits (268), Expect = 5.2e-24
Identity = 45/49 (91.84%), Postives = 48/49 (97.96%), Query Frame = 0 

Query: 4   QEWSYLRGGLTTLDRDYGWINNIHHDIGTHVIHHLFPQIPHYHLIEATE 53
           +EWSYLRGGLTTLDRDYGWINNIHHDIGTHVIHHLFPQIPHYHL+EA +
Sbjct: 330 KEWSYLRGGLTTLDRDYGWINNIHHDIGTHVIHHLFPQIPHYHLVEAKQ 378

[Close]
BLAST of Lsi04G009860 vs. TAIR 10
Match: AT3G12120.1 (fatty acid desaturase 2 )

HSP 1 Score: 83.2 bits (204), Expect = 1.4e-16
Identity = 36/66 (54.55%), Postives = 47/66 (71.21%), Query Frame = 0 

Query: 5   EWSYLRGGLTTLDRDYGWINNIHHDI-GTHVIHHLFPQIPHYHLIEATEATKPVLGKYYR 64
           EW +LRG L T+DRDYG +N + H+I  THV HHLF  +PHY+ +EAT+A KP+LG YY+
Sbjct: 286 EWDWLRGALATVDRDYGILNKVFHNITDTHVAHHLFSTMPHYNAMEATKAIKPILGDYYQ 345

Query: 65  EPEKSW 70
                W
Sbjct: 346 FDGTPW 351

The following BLAST results are available for this feature:
BLAST of Lsi04G009860 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
P486202.4e-5085.29Omega-3 fatty acid desaturase, chloroplastic OS=Sesamum indicum OX=4182 GN=FAD7 ... [more]
Q56VS44.1e-5084.31sn-2 acyl-lipid omega-3 desaturase (ferredoxin), chloroplastic OS=Helianthus ann... [more]
P486229.2e-5083.33Temperature-sensitive sn-2 acyl-lipid omega-3 desaturase (ferredoxin), chloropla... [more]
P486192.7e-4985.00Omega-3 fatty acid desaturase, chloroplastic OS=Ricinus communis OX=3988 GN=FAD7... [more]
P486181.0e-4883.17Omega-3 fatty acid desaturase, chloroplastic (Fragment) OS=Brassica napus OX=370... [more]
BLAST of Lsi04G009860 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1K2M79.9e-5597.06omega-3 fatty acid desaturase, chloroplastic-like OS=Cucurbita maxima OX=3661 GN... [more]
A0A5A7UH661.3e-5497.06Omega-3 fatty acid desaturase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc... [more]
A0A1S3CNS01.3e-5497.06omega-3 fatty acid desaturase, chloroplastic OS=Cucumis melo OX=3656 GN=LOC10350... [more]
A0A6J1FSG43.8e-5496.08omega-3 fatty acid desaturase, chloroplastic-like OS=Cucurbita moschata OX=3662 ... [more]
B3VA194.9e-5494.12Omega-3 fatty acid desaturase OS=Cucumis sativus OX=3659 GN=fad7 PE=2 SV=1[more]
BLAST of Lsi04G009860 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038892287.19.2e-5598.04omega-3 fatty acid desaturase, chloroplastic [Benincasa hispida][more]
XP_023547843.12.0e-5497.06omega-3 fatty acid desaturase, chloroplastic-like [Cucurbita pepo subsp. pepo][more]
KAG7030666.12.0e-5497.06Omega-3 fatty acid desaturase, chloroplastic, partial [Cucurbita argyrosperma su... [more]
XP_022995701.12.0e-5497.06omega-3 fatty acid desaturase, chloroplastic-like [Cucurbita maxima][more]
KAG6599992.12.0e-5497.06Omega-3 fatty acid desaturase, chloroplastic, partial [Cucurbita argyrosperma su... [more]
BLAST of Lsi04G009860 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G05580.16.6e-5183.33fatty acid desaturase 8 [more]
AT3G11170.15.2e-4880.20fatty acid desaturase 7 [more]
AT2G29980.17.8e-4474.26fatty acid desaturase 3 [more]
AT5G05580.25.2e-2491.84fatty acid desaturase 8 [more]
AT3G12120.11.4e-1654.55fatty acid desaturase 2 [more]
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005804Fatty acid desaturase domainPFAMPF00487FA_desaturasecoord: 17..62
e-value: 8.4E-9
score: 35.6
NoneNo IPR availablePANTHERPTHR32100:SF59OMEGA-3 FATTY ACID DESATURASE PROTEIN-RELATEDcoord: 4..104
NoneNo IPR availablePANTHERPTHR32100OMEGA-6 FATTY ACID DESATURASE, CHLOROPLASTICcoord: 4..104

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi04G009860.1Lsi04G009860.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006629 lipid metabolic process
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0016717 oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water